Citrus Sinensis ID: 019672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccEEEEEEccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccccccEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEcccccccccccccccccEEEEcccccccEEEEEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEcccccccEEEEEEEccccccccEEEEEcccccEEEEccccccccccccccccEEEEccccccEEEEEcccEEEEEEcccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHcccccccEHHHHHHHccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEcccccHEEEEccccccccEEEEccccccEEEEEcccccccEEEEEEHHHHHHHccccHHEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEccccccccEEEEEccccEEEEEEEcccccccccccccccHcccccHHccccccccHcccccEcccccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msnqsssypvffvsfnqdnsgfalstkdgfkifdsstgrlcyeRAVGAFSIVEMLYSSSLLAivgageqpslsprrlclfnttTGTALRELNFLTSILAVRLNKKRLVIVLREktyiydantlaildtidtvpnlkglcafspslnacflavpasttkgSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEatksysfrrgtypstifslsfgqsmqFQDILVAtsssgslhvfspgfainqrrggrtssilgsilpesvnevldpadhhvlrnafpagvkRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Flexible Loop (DISEMBL)
msnqsssyPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGeqpslsprrLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREktyiydantlaILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Low Complexity Region (SEG)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Disordered region (IsUnstruct)
*******YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL****
Disordered Region (DISOPRED)
******S****FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS*********************PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT***
Disordered Region (DISEMBL)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Disordered Region (DISPRO)
*******YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA********TSSI*GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q5QA94	525	Autophagy-related protein	N/A	no	0.703	0.451	0.425	5e-51
Q0CW30	414	Autophagy-related protein	N/A	no	0.718	0.584	0.407	8e-50
Q5BH53	429	Autophagy-related protein	yes	no	0.667	0.524	0.429	4e-49
Q6C044	400	Autophagy-related protein	yes	no	0.931	0.785	0.334	8e-49
A2RAG5	415	Autophagy-related protein	yes	no	0.667	0.542	0.421	8e-49
A1CBB8	417	Autophagy-related protein	N/A	no	0.667	0.539	0.421	1e-48
Q2U6D5	413	Autophagy-related protein	yes	no	0.667	0.544	0.421	1e-48
A1DE24	429	Autophagy-related protein	N/A	no	0.667	0.524	0.421	2e-48
Q54NA2	372	Autophagy-related protein	yes	no	0.934	0.846	0.337	2e-48
A7KAM8	427	Autophagy-related protein	yes	no	0.667	0.526	0.408	6e-48

>sp|Q5QA94|ATG18_PICAN Autophagy-related protein 18 OS=Pichia angusta GN=ATG18 PE=3 SV=1

 Score =  201 bits (512), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 164/270 (60%), Gaps = 33/270 (12%)

Query: 10  VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
           + F +FNQD S  ++   +G+KI++      CY ++ G+  IVEML+SSSLLAIVG GEQ
Sbjct: 34  INFANFNQDFSCVSVGYSNGYKIYNCEPFGQCYSKSDGSIGIVEMLFSSSLLAIVGMGEQ 93

Query: 70  PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
            SLSPRRL + NT   T + EL F  +ILAV+LN++RLV++L E  YIYD N + +L TI
Sbjct: 94  HSLSPRRLKIINTKRQTTICELTFPGAILAVKLNRERLVVLLEETIYIYDINNMRLLHTI 153

Query: 130 DTVPNLKGLCAFSPSLNACFLAVPA-------------------STTKGSVLVYN----- 165
           +T  N  GL A SPS    +LA P+                   +   G V++++     
Sbjct: 154 ETPSNPNGLIALSPSSENNYLAYPSPQKLAPNPQTEVTLHSNPQTVRNGDVIIFDAKTLQ 213

Query: 166 ---VMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222
              V+E H      LAAI LS +G+ +ATAS++GTIIRVF V+   K Y FRRGTYP+ I
Sbjct: 214 PTSVIEAH---RTSLAAIALSKDGLLLATASDKGTIIRVFSVATGIKLYQFRRGTYPTKI 270

Query: 223 FSLSFGQSMQFQDILVATSSSGSLHVFSPG 252
           +SL+F    +F   ++A+S++ ++H+F  G
Sbjct: 271 YSLAFSPDNRF---VIASSATETVHIFRLG 297

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.
Pichia angusta (taxid: 870730)

>sp|Q0CW30|ATG18_ASPTN Autophagy-related protein 18 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg18 PE=3 SV=1

 Score =  197 bits (502), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 116/285 (40%), Positives = 167/285 (58%), Gaps = 43/285 (15%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   +CA SPS + C+LA P                       S T G VL++     
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHAPPGSTHVSPTTGEVLIFDALKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI 266
           I+S+SF  +     +L  +SS+ ++H+F      + R G  +S++
Sbjct: 235 IYSMSFNTT---STLLCVSSSTETIHLFKLSHQTSSREGSPSSAL 276

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q5BH53|ATG18_EMENI Autophagy-related protein 18 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg18 PE=3 SV=2

 Score =  195 bits (496), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/268 (42%), Positives = 159/268 (59%), Gaps = 43/268 (16%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKDGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   LCA SPS   C+LA P                       S T G VL++     
Sbjct: 118 SPNPNALCALSPSSENCYLAYPLPQKAAPSSFNPPAHAPPGNTHVSPTSGEVLIFDTLKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVF 249
           IFS+SF  +     +L  +SS+ ++H+F
Sbjct: 235 IFSMSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6C044|ATG18_YARLI Autophagy-related protein 18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG18 PE=3 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 78/392 (19%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FVSFNQD S  ++ T  G+KI++      C+ +A G   IVEML+ +SL+A+VG G+QP 
Sbjct: 7   FVSFNQDYSCVSVGTPQGYKIYNCDPFGKCFSKADGGMGIVEMLFCTSLIAVVGMGDQPQ 66

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
            SPRRL + NT   + + EL F T++L VRLN++RLV++L+++ YIYD + + ++ TI+T
Sbjct: 67  NSPRRLKIVNTKRQSTICELTFPTAVLGVRLNRQRLVVLLQDQIYIYDISNMKLVHTIET 126

Query: 132 VPNLKGLCAFSPSL--NACFL----AVPASTT---------------KGSVLVY------ 164
            PN   +CA S S   N  +L      P+ST                KG V ++      
Sbjct: 127 SPNPGAVCALSASSSDNNNYLVYPFPAPSSTAFNPGENNINDSSPNRKGDVTIFDCNSLQ 186

Query: 165 --NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222
             NV+E H   + PLA + L+S+G  +ATAS++GTIIRVF V +A K Y FRRGTYP+ I
Sbjct: 187 PVNVVEAH---KTPLACLSLNSDGTLLATASDKGTIIRVFSVPKAQKLYEFRRGTYPAQI 243

Query: 223 FSLSFGQSMQFQDILVATSSSGSLHVF--------------------------SPGFAIN 256
           FS++F  +    +++  +S++ ++H+F                            G A  
Sbjct: 244 FSINFNLA---SNLMAVSSATETVHIFQLEAGVSSTPEVPQDTELAIPTRTPQQKGMASV 300

Query: 257 QRRGGRT-----SSILGSILPESVNEVLDPADH--HVLRNAFPAGVKRASVS-------- 301
            R+  R+     +  +GS LP++   + +P      + + + P      SV+        
Sbjct: 301 FRKSSRSLGKGLAGAVGSYLPQTFTGMWEPLRDFAFIKQTSLPGTRSVVSVTSTNPPQVL 360

Query: 302 VITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           V+T  GYF +Y   +    E    L R+++LL
Sbjct: 361 VVTLEGYFYQYTLDLEKGGE--CDLIRQYSLL 390

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|A2RAG5|ATG18_ASPNC Autophagy-related protein 18 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg18 PE=3 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 160/268 (59%), Gaps = 43/268 (16%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   LCA SPS + C+LA P                       + T G VL++     
Sbjct: 118 SPNPNALCALSPSSDNCYLAYPLPQKAPPSTFQPPAHAPPGTTHVTPTSGEVLIFDTLKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLIATASDKGTIIRVFSVPDGRKLYQFRRGSIPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVF 249
           I+S+SF  +     +L  +SS+ ++H+F
Sbjct: 235 IYSMSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|A1CBB8|ATG18_ASPCL Autophagy-related protein 18 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg18 PE=3 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 159/268 (59%), Gaps = 43/268 (16%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGHIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIQT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   +CA SPS + C+LA P                       S T G VL++     
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFTPPSHAPPGNTHVSPTSGEVLIFDSLKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  +ATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLLATASDKGTIIRVFSVPDGHKLYQFRRGSMPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVF 249
           IFS+SF  +     +L  +SS+ ++H+F
Sbjct: 235 IFSMSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q2U6D5|ATG18_ASPOR Autophagy-related protein 18 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg18 PE=3 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 160/268 (59%), Gaps = 43/268 (16%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATAKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   +CA SPS + C+LA P                       S T G VL++     
Sbjct: 118 SPNPSAICALSPSSDNCYLAYPLPHKAPPTSFTPPSHAPPGNTHISPTSGEVLIFDTLKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVF 249
           I+S+SF  +     +L  +SS+ ++H+F
Sbjct: 235 IYSMSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|A1DE24|ATG18_NEOFI Autophagy-related protein 18 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg18 PE=3 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 159/268 (59%), Gaps = 43/268 (16%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIQT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVY----- 164
            PN   +CA SPS + C+LA P                       S T G VL++     
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHTPPGSTHVSPTSGEVLIFDTLKL 177

Query: 165 ---NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST 221
              NV+E H    +PLA I L+S+G  +ATAS++GTIIRVF V +  K Y FRRG+ PS 
Sbjct: 178 EAINVIEAH---RSPLACITLNSDGTLLATASDKGTIIRVFSVPDGHKLYQFRRGSMPSR 234

Query: 222 IFSLSFGQSMQFQDILVATSSSGSLHVF 249
           IFS+SF  +     +L  +SS+ ++H+F
Sbjct: 235 IFSMSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q54NA2|ATG18_DICDI Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 206/361 (57%), Gaps = 46/361 (12%)

Query: 10  VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
           + F++FNQD S  A+ T +G+KIF+S    L Y ++ G   +VEML+S+SL++IVG+G+ 
Sbjct: 11  ILFLNFNQDFSCIAVGTPEGYKIFNSDPYTLYYSQSNGGAGLVEMLFSTSLVSIVGSGDG 70

Query: 70  PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
            + S RRL + N      + +LNF+T+IL+V++N+KR+V+++  K +IYD N + +L+T 
Sbjct: 71  -NTSQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIMETKIHIYDINNMKLLETR 129

Query: 130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL------HSHCEAPLAAIVLS 183
           +   N KGLCA SPS N  ++  PAS   G++LV +V+ L       +H ++ ++A+ LS
Sbjct: 130 EIASNPKGLCALSPS-NTNYIVYPASQNNGNILVMDVLTLETVNLIQAH-KSQISALALS 187

Query: 184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243
            +G  +ATAS++GT+IRVF +  A KS SFRRG+ P+ I S++F    ++   L  +S +
Sbjct: 188 QDGTLLATASDKGTVIRVFALPYANKSLSFRRGSIPAIIHSMTFSLDGRY---LCVSSDT 244

Query: 244 GSLHVF-------------------SPGFAINQRRGGRTSSILGSILPESVNEVLDPADH 284
           G++H+F                   SP   +     G  +S + S LPE +++V +P+  
Sbjct: 245 GTIHIFKIDFSSSNSSSFHQAQPSSSPSGGMMGLNFGGLTSKMSSYLPEVISQVWEPSRD 304

Query: 285 --HVLRNAFPAGV--------KRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT 334
             H+     P G+           +  V+T +  +++Y F  +        L +EF+LL 
Sbjct: 305 FAHI---KIPPGIPSICALMQNNKTAMVLTADSLYMQYNF--DESVGGELKLAKEFSLLM 359

Query: 335 K 335
           +
Sbjct: 360 E 360

May be involved in cytoplasm to vacuole transport and autophagy.

Dictyostelium discoideum (taxid: 44689)

>sp|A7KAM8|ATG18_PENCW Autophagy-related protein 18 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg18 PE=3 SV=1

 Score =  191 bits (486), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 158/267 (59%), Gaps = 42/267 (15%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +++EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFQIFTTEPFAKSYEAKEGNIAVIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT     + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TIDT
Sbjct: 58  LSPRRLQIQNTKRQCTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLSTIDT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP---------------------ASTTKGSVLVY------ 164
            PN   +CA +PS   C++A P                      S T G VL++      
Sbjct: 118 SPNPNAICALAPSSENCYMAYPLPQKAPAAASTPAHAPPGTTHVSPTTGDVLIFDAVKLE 177

Query: 165 --NVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222
             NV+E H    +PLA I L+S+G  +ATAS++GTIIR+F V +  K Y FRRG+ PS I
Sbjct: 178 AINVIEAH---RSPLALIALNSDGTLLATASDKGTIIRIFSVPDGHKLYQFRRGSMPSRI 234

Query: 223 FSLSFGQSMQFQDILVATSSSGSLHVF 249
           +S+SF  +     +L  +SS+ ++H+F
Sbjct: 235 YSMSFNTT---STLLCVSSSTETVHIF 258

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
255586718	349	WD-repeat protein, putative [Ricinus com	0.875	0.845	0.813	1e-137
359484818	368	PREDICTED: autophagy-related protein 18-	0.985	0.902	0.706	1e-137
297743710	394	unnamed protein product [Vitis vinifera]	0.985	0.842	0.706	1e-136
356562531	368	PREDICTED: autophagy-related protein 18-	0.991	0.907	0.675	1e-135
356500701	368	PREDICTED: autophagy-related protein 18-	0.991	0.907	0.673	1e-133
357479935	372	Autophagy-related protein [Medicago trun	0.964	0.873	0.654	1e-130
224143877	297	predicted protein [Populus trichocarpa]	0.827	0.939	0.767	1e-119
30688712	312	autophagy-related protein 18b [Arabidops	0.830	0.897	0.699	1e-115
297798918	312	hypothetical protein ARALYDRAFT_913426 [	0.830	0.897	0.695	1e-115
449453940	316	PREDICTED: autophagy-related protein 18-	0.824	0.879	0.674	1e-112

>gi|255586718|ref|XP_002533983.1| WD-repeat protein, putative [Ricinus communis] gi|223526034|gb|EEF28403.1| WD-repeat protein, putative [Ricinus communis]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/301 (81%), Positives = 269/301 (89%), Gaps = 6/301 (1%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           MS+ SS+YP+   SFNQ+N+GFA+ST+DGFKI D +TGRLCYER VGAF IVEMLYSSSL
Sbjct: 1   MSSHSSNYPILSASFNQENTGFAVSTRDGFKILDPNTGRLCYERGVGAFIIVEMLYSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNT+TGTALRELNFLTSILAVRLN+KRLV++L+EKT+IYD+
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTSTGTALRELNFLTSILAVRLNRKRLVVLLQEKTFIYDS 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A 175
           NTLAILDTIDTVPN+KGLCAFSPSL+ CFLA+PASTTKGSVLVYNVMEL SHCE     A
Sbjct: 121 NTLAILDTIDTVPNVKGLCAFSPSLDGCFLALPASTTKGSVLVYNVMELQSHCEIDAHRA 180

Query: 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
           PLAA+ LSSNGMYIATASEQGTIIRV LV EATKSYSFRRGTYPSTIFSLSFG S Q  D
Sbjct: 181 PLAAVALSSNGMYIATASEQGTIIRVHLVQEATKSYSFRRGTYPSTIFSLSFGPSKQLPD 240

Query: 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295
           ILVA+SSSGS+HVFS GF INQ R  R+SS LGSILP+SVN+ LDPA HHVL NA PAGV
Sbjct: 241 ILVASSSSGSVHVFSLGFTINQ-RSRRSSSFLGSILPDSVNDALDPAHHHVLHNAVPAGV 299

Query: 296 K 296
           K
Sbjct: 300 K 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484818|ref|XP_003633169.1| PREDICTED: autophagy-related protein 18-like [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/361 (70%), Positives = 288/361 (79%), Gaps = 29/361 (8%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSSYP+   SFNQD S FA+ T+DGFK+FDS TG L YERA+G F IVEML+SSSL
Sbjct: 1   MANHSSSYPILCASFNQDTSYFAIGTRDGFKVFDSETGTLRYERAIGGFIIVEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNTTTG ALRELNFLTS+LA+RLN+KRLV+VL+EKTYIYD 
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTTTGAALRELNFLTSVLAIRLNRKRLVVVLQEKTYIYDL 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A 175
           N+L+ILDTIDTVPN KGLCAFSPSL+ CFLA+PASTT+GSVLVYNVMELHSHCE     +
Sbjct: 121 NSLSILDTIDTVPNSKGLCAFSPSLDGCFLALPASTTRGSVLVYNVMELHSHCEIDAHRS 180

Query: 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
           PLAAIV S NGMYIATASEQGTIIRV L+SEATKSYSFRRG YPSTIFSLSFG S QF D
Sbjct: 181 PLAAIVFSPNGMYIATASEQGTIIRVHLISEATKSYSFRRGAYPSTIFSLSFGPSTQFPD 240

Query: 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295
           +LVATSSSGS+H FS G  +NQR   R+SS  GSI+P+SVN+VLDPA HHVL N  PAGV
Sbjct: 241 VLVATSSSGSVHAFSLGLGMNQRS-RRSSSFFGSIIPDSVNDVLDPA-HHVLHNVVPAGV 298

Query: 296 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           K                      RA+VS+IT++G F EY   IN   ES+W L+R F+LL
Sbjct: 299 KSYAVIRKVDRVPGTSISESVAYRATVSIITHSGSFQEYTLIINQKNESSWRLERRFDLL 358

Query: 334 T 334
           T
Sbjct: 359 T 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743710|emb|CBI36593.3| unnamed protein product [Vitis vinifera]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/361 (70%), Positives = 288/361 (79%), Gaps = 29/361 (8%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSSYP+   SFNQD S FA+ T+DGFK+FDS TG L YERA+G F IVEML+SSSL
Sbjct: 1   MANHSSSYPILCASFNQDTSYFAIGTRDGFKVFDSETGTLRYERAIGGFIIVEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNTTTG ALRELNFLTS+LA+RLN+KRLV+VL+EKTYIYD 
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTTTGAALRELNFLTSVLAIRLNRKRLVVVLQEKTYIYDL 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A 175
           N+L+ILDTIDTVPN KGLCAFSPSL+ CFLA+PASTT+GSVLVYNVMELHSHCE     +
Sbjct: 121 NSLSILDTIDTVPNSKGLCAFSPSLDGCFLALPASTTRGSVLVYNVMELHSHCEIDAHRS 180

Query: 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
           PLAAIV S NGMYIATASEQGTIIRV L+SEATKSYSFRRG YPSTIFSLSFG S QF D
Sbjct: 181 PLAAIVFSPNGMYIATASEQGTIIRVHLISEATKSYSFRRGAYPSTIFSLSFGPSTQFPD 240

Query: 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295
           +LVATSSSGS+H FS G  +NQR   R+SS  GSI+P+SVN+VLDPA HHVL N  PAGV
Sbjct: 241 VLVATSSSGSVHAFSLGLGMNQRS-RRSSSFFGSIIPDSVNDVLDPA-HHVLHNVVPAGV 298

Query: 296 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           K                      RA+VS+IT++G F EY   IN   ES+W L+R F+LL
Sbjct: 299 KSYAVIRKVDRVPGTSISESVAYRATVSIITHSGSFQEYTLIINQKNESSWRLERRFDLL 358

Query: 334 T 334
           T
Sbjct: 359 T 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562531|ref|XP_003549523.1| PREDICTED: autophagy-related protein 18-like [Glycine max]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 287/361 (79%), Gaps = 27/361 (7%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSS  +   SFNQD+S FA+ T+DG +IFD++TGRLCYERAVGAF I EML+SSSL
Sbjct: 1   MANHSSSPSLLCASFNQDHSYFAVGTRDGVRIFDTNTGRLCYERAVGAFVIAEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAG+QPSLSPRRLCLFNTTTG ALRELNFLTSILAVR+N++RL+++L++K Y+Y+ 
Sbjct: 61  LAIVGAGDQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYVYEI 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A 175
           N+L ILDTIDTVPN+KGLCAFSP L+AC+LA+PASTTKGS L+YNVM+ H HCE     +
Sbjct: 121 NSLTILDTIDTVPNIKGLCAFSPCLDACYLALPASTTKGSALLYNVMDCHLHCEIEAHRS 180

Query: 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
           PLAA+VLSSNGMYIATASEQGTIIRV LVS+ATKSYSFRRGTYPSTIFSLSFG S Q  D
Sbjct: 181 PLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSLSFGPSKQLPD 240

Query: 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295
           IL A+SSSGS+H+F+ GFA +  R  R+S  LGSI+P +VN+VLDPA HHVL NA  AGV
Sbjct: 241 ILAASSSSGSIHLFTLGFASHPSRSKRSSGFLGSIIPGAVNDVLDPAYHHVLHNAVSAGV 300

Query: 296 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           K                      RA +SVITYNGYF EY  SI+   E +W+L REFNLL
Sbjct: 301 KSHAIIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAQNELSWSLVREFNLL 360

Query: 334 T 334
           T
Sbjct: 361 T 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500701|ref|XP_003519170.1| PREDICTED: autophagy-related protein 18-like [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 288/361 (79%), Gaps = 27/361 (7%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+NQSSS  +   SFNQD+S FA+ T+DG +IFD++TGRLCYERAVGAF I EML+SS+L
Sbjct: 1   MTNQSSSPSLLCASFNQDHSYFAVGTRDGVRIFDANTGRLCYERAVGAFVIAEMLFSSNL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAG QPSLSPRRLCLFNTTTG ALRELNFLTSILAVR+N++RL+++L++K YIY+ 
Sbjct: 61  LAIVGAGHQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYIYEI 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A 175
           N+L ILDTIDTVPN+KGLCAFSPSL+AC+LA+PASTTKGS L+YNVME H HCE     +
Sbjct: 121 NSLTILDTIDTVPNIKGLCAFSPSLDACYLALPASTTKGSALLYNVMECHLHCEIEAHRS 180

Query: 176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
           PLAA+VLSSNGMYIATASEQGTIIRV LVS+ATKSYSFRRGTYPSTIFS+SFG S +  D
Sbjct: 181 PLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSVSFGPSKRLPD 240

Query: 236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 295
           IL A+SSSGS+H+F+ GFA       R+S  LGSI+P++V++VLDPA HHVL NA PAGV
Sbjct: 241 ILAASSSSGSIHLFTLGFASRPSSSKRSSGFLGSIIPDAVHDVLDPAHHHVLHNAVPAGV 300

Query: 296 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           K                      RA +SVITYNGYF EY  SI+   E +W+L R+FNLL
Sbjct: 301 KSYAVIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAHNELSWSLGRQFNLL 360

Query: 334 T 334
           T
Sbjct: 361 T 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479935|ref|XP_003610253.1| Autophagy-related protein [Medicago truncatula] gi|355511308|gb|AES92450.1| Autophagy-related protein [Medicago truncatula]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/353 (65%), Positives = 282/353 (79%), Gaps = 28/353 (7%)

Query: 9   PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE 68
           P+   SFNQDNS FA+ TKDGFKIFD++TG+LCY+R VGAFSIVEML++SSLLAIVGAG+
Sbjct: 14  PILCASFNQDNSCFAIGTKDGFKIFDTNTGKLCYQRDVGAFSIVEMLFTSSLLAIVGAGD 73

Query: 69  QPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDT 128
           QPSLSPRRLCLFNTTTG  LRELNFLTSILA+R+N+KRL+++L++K Y+Y+ N+L+ILDT
Sbjct: 74  QPSLSPRRLCLFNTTTGAPLRELNFLTSILAIRMNRKRLIVILQDKAYVYEINSLSILDT 133

Query: 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLS 183
            DTVPN+KGLCA SP L+AC++A+PASTTKGS L+YNVM+ + HCE     +PLAA+V S
Sbjct: 134 FDTVPNIKGLCALSPCLDACYMALPASTTKGSALLYNVMDCNLHCEIEAHRSPLAAMVFS 193

Query: 184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243
           SNGMYIATASEQGT++RV LVS+ATKSYSFRRG+Y STIFSLSFG S Q  DIL ATSSS
Sbjct: 194 SNGMYIATASEQGTLVRVHLVSDATKSYSFRRGSYSSTIFSLSFGPSKQLPDILAATSSS 253

Query: 244 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK------- 296
           GS+H+F+ GFA +  R  R+S  LGSI+P++VN+VLDPA HHVL NA PAGVK       
Sbjct: 254 GSIHLFTLGFA-SHPRSKRSSGFLGSIIPDAVNDVLDPAYHHVLHNAVPAGVKSSAVIRK 312

Query: 297 ---------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT 334
                          RA++ VITYNGYF EY  SI+   + +W+L+RE NLLT
Sbjct: 313 VENVTDTSSSELLACRANMCVITYNGYFQEYNLSIDAHQKLSWSLERETNLLT 365

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143877|ref|XP_002325106.1| predicted protein [Populus trichocarpa] gi|222866540|gb|EEF03671.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/288 (76%), Positives = 246/288 (85%), Gaps = 9/288 (3%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA---VRLNKKRLVIV 110
           MLYSSSLLAIVG GEQPSLSPRRLCLFNTTTGTALRELNFLTS+LA   V ++  RLV+V
Sbjct: 1   MLYSSSLLAIVGGGEQPSLSPRRLCLFNTTTGTALRELNFLTSVLANYSVVVDHCRLVVV 60

Query: 111 LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170
           L+EKTYIYD NTLAILD IDTVPN+KGLCAFSPSL+ CFLA+P+STTKGSVLVYNVMELH
Sbjct: 61  LQEKTYIYDLNTLAILDAIDTVPNVKGLCAFSPSLDGCFLALPSSTTKGSVLVYNVMELH 120

Query: 171 SHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 225
           SHCE     +PLAAIV+S NGMYIATASEQGTIIRV LVSEATKSYSFRRGTYPSTIFSL
Sbjct: 121 SHCEIDAHRSPLAAIVMSFNGMYIATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSL 180

Query: 226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH 285
           SFG S Q  +ILVA SSSGS+HVFS G AINQ RG R+SS LGS+LP+SVN+  DPA H 
Sbjct: 181 SFGPSTQLPEILVALSSSGSIHVFSLGLAINQ-RGRRSSSFLGSLLPDSVNDAFDPAHHR 239

Query: 286 VLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
           VL+ A PAGVKRA++SVIT+NG+F+EY   +N   ES W L+ EFNLL
Sbjct: 240 VLQKAVPAGVKRATLSVITFNGHFLEYTVDVNTQNESKWRLESEFNLL 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688712|ref|NP_194780.2| autophagy-related protein 18b [Arabidopsis thaliana] gi|23296501|gb|AAN13072.1| unknown protein [Arabidopsis thaliana] gi|332660374|gb|AEE85774.1| autophagy-related protein 18b [Arabidopsis thaliana]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/309 (69%), Positives = 241/309 (77%), Gaps = 29/309 (9%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPASTTKGSVLVYNVM+L SH 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query: 174 E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228
           E     +PLAAI LSSNGMYIAT SEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 288
            S Q  DIL+ATSSSGS+H FS   AINQ R  R++S LGS+LP+SV++ LDPA HHVL+
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSLAINQ-RSKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query: 289 NAFPAGVK-----------------------RASVSVITYNGYFVEYIFSINNCCESTWT 325
           NA  +G++                       RA+VSVITYNGYF EY  SINN  ES WT
Sbjct: 240 NAVSSGIRSYAVVRKIDKLEGTSSPSHFTSLRATVSVITYNGYFQEYTLSINNKNESLWT 299

Query: 326 LDREFNLLT 334
           L+REFNL +
Sbjct: 300 LEREFNLFS 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798918|ref|XP_002867343.1| hypothetical protein ARALYDRAFT_913426 [Arabidopsis lyrata subsp. lyrata] gi|297313179|gb|EFH43602.1| hypothetical protein ARALYDRAFT_913426 [Arabidopsis lyrata subsp. lyrata]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/309 (69%), Positives = 241/309 (77%), Gaps = 29/309 (9%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPAS TKGSVLVYNVM+L SH 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASATKGSVLVYNVMDLQSHS 120

Query: 174 E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228
           E     +PLAAI LSSNGMYIATASEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATASEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 288
            S Q  DIL+ATSSSGS+H FS   AINQ R  R++S LGS+LP+SV++ LDPA HHVL+
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSLAINQ-RSKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query: 289 NAFPAGVK-----------------------RASVSVITYNGYFVEYIFSINNCCESTWT 325
           NA  +G++                       RA+VSVITYNGYF EY  SINN  ES WT
Sbjct: 240 NAVSSGIRSYAVVRKIDKLEGTSSPSQFTSLRATVSVITYNGYFQEYTLSINNKNESLWT 299

Query: 326 LDREFNLLT 334
           ++REFNL +
Sbjct: 300 MEREFNLFS 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453940|ref|XP_004144714.1| PREDICTED: autophagy-related protein 18-like [Cucumis sativus] gi|449506223|ref|XP_004162686.1| PREDICTED: autophagy-related protein 18-like [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/310 (67%), Positives = 245/310 (79%), Gaps = 32/310 (10%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           ML+SS+L+AIVGAGEQPSLSPRRLCLFNT +G ALRELNFLTSILAVR+N+KRLV++L++
Sbjct: 1   MLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKRLVVLLQD 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KTYIYD N+L ILDTIDTVPN KG CAFSPSL+ CFLA+PAS TKGS+L+YNVMEL  HC
Sbjct: 61  KTYIYDINSLTILDTIDTVPNSKGTCAFSPSLDGCFLAIPASITKGSLLLYNVMELQLHC 120

Query: 174 E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228
           E     APLA +VLSSNGMYIATASEQGT+IRV LVSEATKSYSFRRG+YPSTIFSLSFG
Sbjct: 121 EIEAHRAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYPSTIFSLSFG 180

Query: 229 QSMQFQDILVATSSSGSLHVFSPGFAINQ--RRGGRTSSILGSILPESVNEVLDPADHHV 286
              Q  +ILVATSSSGS+HVF  GFAINQ  RR G     LGSI+P+S+++ LDPA HH+
Sbjct: 181 PCSQVPEILVATSSSGSVHVFPLGFAINQSSRRSG---GFLGSIMPDSISDALDPAHHHI 237

Query: 287 LRNAFPAGVK----------------------RASVSVITYNGYFVEYIFSINNCCESTW 324
           + NA PAG+K                      RA++++ITYNGYF EY  S+NN  E + 
Sbjct: 238 VHNAAPAGIKSYAVIRKVDRVSDPSTSEIVACRATLAIITYNGYFQEYTLSLNNHNEFSR 297

Query: 325 TLDREFNLLT 334
           +LDREFNL+T
Sbjct: 298 SLDREFNLMT 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2118801	312	ATG18B "AT4G30510" [Arabidopsi	0.729	0.788	0.75	6.5e-106
UNIPROTKB|Q6K9M2	374	OJ1249_F12.5 "Os02g0791800 pro	0.872	0.786	0.559	8e-85
ASPGD|ASPL0000059928	429	AN0127 [Emericella nidulans (t	0.400	0.314	0.478	1.6e-56
UNIPROTKB|Q5BH53	429	atg18 "Autophagy-related prote	0.400	0.314	0.478	1.6e-56
SGD|S000001917	500	ATG18 "Phosphoinositide bindin	0.442	0.298	0.483	8.7e-54
UNIPROTKB|Q75F47	537	ATG18 "Autophagy-related prote	0.430	0.270	0.466	4.6e-52
UNIPROTKB|A8I0Q7	455	CHLREDRAFT_187711 "Predicted p	0.872	0.646	0.362	1.8e-50
UNIPROTKB|Q524W4	469	ATG18 "Autophagy-related prote	0.400	0.287	0.429	2.4e-46
CGD|CAL0005165	558	orf19.6064 [Candida albicans (	0.454	0.274	0.419	4.8e-46
DICTYBASE|DDB_G0285375	372	atg18 "autophagy protein 18" [	0.709	0.642	0.402	4.8e-46

TAIR|locus:2118801 ATG18B "AT4G30510" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 189/252 (75%), Positives = 212/252 (84%)

Query:    54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
             MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct:     1 MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query:   114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
             KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPASTTKGSVLVYNVM+L SH 
Sbjct:    61 KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query:   174 E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 228
             E     +PLAAI LSSNGMYIAT SEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct:   121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query:   229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 288
              S Q  DIL+ATSSSGS+H FS   AINQR   R++S LGS+LP+SV++ LDPA HHVL+
Sbjct:   181 PSTQLPDILIATSSSGSIHAFSLSLAINQR-SKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query:   289 NAFPAGVKRASV 300
             NA  +G++  +V
Sbjct:   240 NAVSSGIRSYAV 251

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0016236 "macroautophagy" evidence=IBA

GO:0070772 "PAS complex" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q6K9M2 OJ1249_F12.5 "Os02g0791800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 170/304 (55%), Positives = 225/304 (74%)

Query:     1 MSNQSSSYP---VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS 57
             M++ SS  P   +   SFNQDNS F + TKDGF+IFD+ TG+L Y++ +G    +EM + 
Sbjct:     1 MASSSSPPPPPQIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR 60

Query:    58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYI 117
             +++LAIVG GEQP LSPR L L +T      ++LNF TS+LAVRL++ RLV+VL+++T+I
Sbjct:    61 TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFI 120

Query:   118 YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC---- 173
             YD N+  IL+ I+TVPN KGLCAF+P+  AC+LA+PAST+KGS LVY   E    C    
Sbjct:   121 YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA 180

Query:   174 -EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 232
              E+PLAA+  SSNG Y+ATAS +GTIIRVFLV++ATKS+SFRRGTYPSTI+SLSFG S  
Sbjct:   181 HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD 240

Query:   233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP 292
               D+LVATSSSGSLH+F    A N+R   +TS +LGS++P ++   LDPA+HH++ N  P
Sbjct:   241 LPDVLVATSSSGSLHMFFLDAARNRRN--QTSKLLGSMIPGAITRALDPANHHIIHNVIP 298

Query:   293 AGVK 296
             AG+K
Sbjct:   299 AGIK 302

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

ASPGD|ASPL0000059928 AN0127 [Emericella nidulans (taxid:162425)]

 Score = 317 (116.6 bits), Expect = 1.6e-56, Sum P(4) = 1.6e-56
 Identities = 68/142 (47%), Positives = 94/142 (66%)

Query:    12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
             FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct:     5 FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKDGNIAIIEMLFSTSLVALI------- 57

Query:    72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
             LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct:    58 LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query:   132 VPNLKGLCAFSPSLNACFLAVP 153
              PN   LCA SPS   C+LA P
Sbjct:   118 SPNPNALCALSPSSENCYLAYP 139

GO:0032258 "CVT pathway" evidence=IEA

GO:0030242 "peroxisome degradation" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006624 "vacuolar protein processing" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0070772 "PAS complex" evidence=IEA

UNIPROTKB|Q5BH53 atg18 "Autophagy-related protein 18" [Aspergillus nidulans FGSC A4 (taxid:227321)]

 Score = 317 (116.6 bits), Expect = 1.6e-56, Sum P(4) = 1.6e-56
 Identities = 68/142 (47%), Positives = 94/142 (66%)

Query:    12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
             FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct:     5 FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKDGNIAIIEMLFSTSLVALI------- 57

Query:    72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
             LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct:    58 LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query:   132 VPNLKGLCAFSPSLNACFLAVP 153
              PN   LCA SPS   C+LA P
Sbjct:   118 SPNPNALCALSPSSENCYLAYP 139

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000329 "fungal-type vacuole membrane" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

SGD|S000001917 ATG18 "Phosphoinositide binding protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 355 (130.0 bits), Expect = 8.7e-54, Sum P(3) = 8.7e-54
 Identities = 72/149 (48%), Positives = 103/149 (69%)

Query:     6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVG 65
             SS  + F++FNQ  +  +L T  GFKIF+       Y    G ++IVEML+S+SLLA+VG
Sbjct:     4 SSPTINFINFNQTGTCISLGTSKGFKIFNCEPFGKFYSEDSGGYAIVEMLFSTSLLALVG 63

Query:    66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAI 125
              G+QP+LSPRRL + NT   + + E+ F TSIL+V++NK RLV++L+E+ YIYD NT+ +
Sbjct:    64 IGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRL 123

Query:   126 LDTIDTVPNLKGLCAFSPSLNACFLAVPA 154
             L TI+T PN +GL A SPS+   +L  P+
Sbjct:   124 LHTIETNPNPRGLMAMSPSVANSYLVYPS 152

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006914 "autophagy" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0006624 "vacuolar protein processing" evidence=IMP;IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0000407 "pre-autophagosomal structure" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0070772 "PAS complex" evidence=IDA;IPI

GO:0030242 "peroxisome degradation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IDA;IMP

GO:0005768 "endosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0032258 "CVT pathway" evidence=IMP;IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q75F47 ATG18 "Autophagy-related protein 18" [Ashbya gossypii ATCC 10895 (taxid:284811)]

 Score = 328 (120.5 bits), Expect = 4.6e-52, Sum P(3) = 4.6e-52
 Identities = 69/148 (46%), Positives = 101/148 (68%)

Query:     9 PVF-FVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
             PV  F++FNQ  +  ++ T +G KIF+    GR  Y    G   IVEML+S+SLLA+VG 
Sbjct:     7 PVINFINFNQTGTCISMGTSEGLKIFNCDPFGRF-YSDEDGGCGIVEMLFSTSLLAVVGI 65

Query:    67 GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL 126
             G+ PS+SPRRL + NT   + + E+ F T+ILAV++N+ RLV++L+E+ YIYD N++ +L
Sbjct:    66 GDNPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLL 125

Query:   127 DTIDTVPNLKGLCAFSPSLNACFLAVPA 154
              TI+T  N +GL + SPSL   +LA P+
Sbjct:   126 YTIETSSNPRGLISMSPSLENNYLAYPS 153

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000329 "fungal-type vacuole membrane" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|A8I0Q7 CHLREDRAFT_187711 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 497 (180.0 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 113/312 (36%), Positives = 182/312 (58%)

Query:     4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAI 63
             Q S   V +V+FNQD +  A++++ G  +++  T +LC+  A+GA   VEML+ +SL+  
Sbjct:     7 QGSKSGVLYVTFNQDCTCVAIASQQGLHVYNVDTHKLCFRHAIGAVRAVEMLFCTSLIGF 66

Query:    64 VGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTL 123
             VGAGEQP+L+PR+L + NTT    ++EL + TS+LAVR+N++RLV+V   + ++Y    L
Sbjct:    67 VGAGEQPALTPRKLSVMNTTANRLIQELTYPTSVLAVRMNRQRLVVVTARRVHVYSMQNL 126

Query:   124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY-------NVM-ELHSHCEA 175
               L  IDT  N +G CA +       LA+P+S T G+V +Y       NV+ E  +H + 
Sbjct:   127 TCLRVIDTEENARGCCALTCCHEPNLLALPSSATTGTVRIYDLAQEGGNVLSEAQAH-QT 185

Query:   176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 235
              +  +  S +G  +ATAS +GT+IRV  +  A +++SFRRGT  + I S++F        
Sbjct:   186 SVTTMAWSGDGGLLATASAKGTVIRVHRLPSAARAHSFRRGTLSAAINSMAFSPPGAPLQ 245

Query:   236 ILVATSSSGSLHVFS------PGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN 289
             +L A SS G++HVF       PG  +  R     + +L +++  SV ++++PA  +V   
Sbjct:   246 LLAAASSHGTVHVFRLEEPDPPG--VLPRPASAAAGLLTAVMRYSVGDMVEPA-RNVATI 302

Query:   290 AFPAGVKRASVS 301
               P  V  A+V+
Sbjct:   303 RLPTSVGAATVA 314

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q524W4 ATG18 "Autophagy-related protein 18" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 293 (108.2 bits), Expect = 2.4e-46, Sum P(2) = 2.4e-46
 Identities = 61/142 (42%), Positives = 90/142 (63%)

Query:    12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
             F++FNQD+   A+ T  GF+I+ +      +    G  SI+EML+S+SL+A++       
Sbjct:     8 FITFNQDHGCLAVGTSRGFRIYHTEPFSKIFSSEDGNVSIIEMLFSTSLVALI------- 60

Query:    72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
             LSPR L + NT  G+ + EL F +++LAVRLN+KRL +VL ++ Y+YD   +++L TI T
Sbjct:    61 LSPRHLIIQNTKRGSVICELTFPSAVLAVRLNRKRLAVVLEDEIYLYDIANMSLLFTIAT 120

Query:   132 VPNLKGLCAFSPSLNACFLAVP 153
              PN   +CA SPS   CFLA P
Sbjct:   121 SPNPSAICALSPSSENCFLAYP 142

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0005165 orf19.6064 [Candida albicans (taxid:5476)]

 Score = 285 (105.4 bits), Expect = 4.8e-46, Sum P(3) = 4.8e-46
 Identities = 65/155 (41%), Positives = 95/155 (61%)

Query:     2 SNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSS 59
             +NQ  S  V ++SFNQD S   +  K+G+KIF+     GR    +   +  IVEMLY +S
Sbjct:    36 NNQQYSEIVNYISFNQDASCITIGLKNGYKIFNCQPNFGRSFQFKNDESTGIVEMLYCTS 95

Query:    60 LLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYD 119
             LLA V  GE+   SPR+L + NT T + + +L F ++IL V+L   RL++VL ++ Y+YD
Sbjct:    96 LLATVAQGEEIGSSPRKLKIINTKTKSTICDLIFPSTILQVKLTNTRLIVVLEDQIYLYD 155

Query:   120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154
               T+ +L TI+T PNL GL A S   +  +LA P+
Sbjct:   156 ITTMKLLHTIETSPNLSGLSAISYDDSNSYLAYPS 190

GO:0005768 "endosome" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0070772 "PAS complex" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0030242 "peroxisome degradation" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006624 "vacuolar protein processing" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

DICTYBASE|DDB_G0285375 atg18 "autophagy protein 18" [Dictyostelium discoideum (taxid:44689)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 101/251 (40%), Positives = 166/251 (66%)

Query:    10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
             + F++FNQD S  A+ T +G+KIF+S    L Y ++ G   +VEML+S+SL++IVG+G+ 
Sbjct:    11 ILFLNFNQDFSCIAVGTPEGYKIFNSDPYTLYYSQSNGGAGLVEMLFSTSLVSIVGSGDG 70

Query:    70 PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
              + S RRL + N      + +LNF+T+IL+V++N+KR+V+++  K +IYD N + +L+T 
Sbjct:    71 -NTSQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIMETKIHIYDINNMKLLETR 129

Query:   130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLS 183
             +   N KGLCA SPS N  ++  PAS   G++LV +V+ L +      H ++ ++A+ LS
Sbjct:   130 EIASNPKGLCALSPS-NTNYIVYPASQNNGNILVMDVLTLETVNLIQAH-KSQISALALS 187

Query:   184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 243
              +G  +ATAS++GT+IRVF +  A KS SFRRG+ P+ I S++F    ++   L  +S +
Sbjct:   188 QDGTLLATASDKGTVIRVFALPYANKSLSFRRGSIPAIIHSMTFSLDGRY---LCVSSDT 244

Query:   244 GSLHVFSPGFA 254
             G++H+F   F+
Sbjct:   245 GTIHIFKIDFS 255

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0006914 "autophagy" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA;IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NA2	ATG18_DICDI	No assigned EC number	0.3379	0.9347	0.8467	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.98
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0645	312	consensus WD40 repeat protein [General function pr	99.91
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.91
PTZ00421	493	coronin; Provisional	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.9
KOG0641	350	consensus WD40 repeat protein [General function pr	99.9
PTZ00420	568	coronin; Provisional	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
PTZ00421	493	coronin; Provisional	99.9
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG2055	514	consensus WD40 repeat protein [General function pr	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0289	506	consensus mRNA splicing factor [General function p	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.86
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.86
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.86
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.86
KOG0643	327	consensus Translation initiation factor 3, subunit	99.86
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG1539	910	consensus WD repeat protein [General function pred	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.83
KOG0646	476	consensus WD40 repeat protein [General function pr	99.82
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
KOG1274	933	consensus WD40 repeat protein [General function pr	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.8
KOG0646	476	consensus WD40 repeat protein [General function pr	99.79
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.79
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.77
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.77
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.77
KOG0639	705	consensus Transducin-like enhancer of split protei	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.76
KOG0267	825	consensus Microtubule severing protein katanin p80	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.74
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.73
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.72
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.72
KOG4328	498	consensus WD40 protein [Function unknown]	99.72
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.71
KOG2096	420	consensus WD40 repeat protein [General function pr	99.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.7
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG4328	498	consensus WD40 protein [Function unknown]	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.7
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.7
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.69
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.68
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.68
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.63
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
KOG1273	405	consensus WD40 repeat protein [General function pr	99.6
KOG4227	609	consensus WD40 repeat protein [General function pr	99.6
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.59
KOG1963	792	consensus WD40 repeat protein [General function pr	99.58
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.58
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.55
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.54
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.54
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.53
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.51
KOG0649	325	consensus WD40 repeat protein [General function pr	99.51
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.51
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.5
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.5
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.49
KOG0649	325	consensus WD40 repeat protein [General function pr	99.49
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.48
PRK01742	429	tolB translocation protein TolB; Provisional	99.47
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.45
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.44
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.43
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.43
PRK01742	429	tolB translocation protein TolB; Provisional	99.42
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.42
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.39
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.38
KOG1334	559	consensus WD40 repeat protein [General function pr	99.38
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.35
PRK03629	429	tolB translocation protein TolB; Provisional	99.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.32
KOG4547	541	consensus WD40 repeat-containing protein [General	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.32
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.31
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.29
KOG1310	758	consensus WD40 repeat protein [General function pr	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.28
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.27
KOG2139	445	consensus WD40 repeat protein [General function pr	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.25
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.25
PRK04922	433	tolB translocation protein TolB; Provisional	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.22
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.22
PRK04922	433	tolB translocation protein TolB; Provisional	99.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.2
KOG4227	609	consensus WD40 repeat protein [General function pr	99.19
PRK05137	435	tolB translocation protein TolB; Provisional	99.15
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PRK02889	427	tolB translocation protein TolB; Provisional	99.12
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.08
PRK02889	427	tolB translocation protein TolB; Provisional	99.06
KOG1310	758	consensus WD40 repeat protein [General function pr	99.06
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.04
KOG2321	703	consensus WD40 repeat protein [General function pr	99.04
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.03
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.03
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	99.02
PRK00178	430	tolB translocation protein TolB; Provisional	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.99
PRK00178	430	tolB translocation protein TolB; Provisional	98.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.9
KOG2315	566	consensus Predicted translation initiation factor	98.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.9
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.89
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.89
PRK04792	448	tolB translocation protein TolB; Provisional	98.86
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.81
KOG1334	559	consensus WD40 repeat protein [General function pr	98.78
COG4946	668	Uncharacterized protein related to the periplasmic	98.78
PRK01029	428	tolB translocation protein TolB; Provisional	98.78
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.76
PRK01029	428	tolB translocation protein TolB; Provisional	98.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
KOG4547	541	consensus WD40 repeat-containing protein [General	98.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.69
COG4946	668	Uncharacterized protein related to the periplasmic	98.62
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.62
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.62
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.6
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.58
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.51
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.5
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.48
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.48
PRK04043	419	tolB translocation protein TolB; Provisional	98.46
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.46
PRK04043	419	tolB translocation protein TolB; Provisional	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.45
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.41
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.35
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.34
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.25
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.23
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.19
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.18
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.16
KOG2695	425	consensus WD40 repeat protein [General function pr	98.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.12
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.11
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.08
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.08
KOG2314	698	consensus Translation initiation factor 3, subunit	98.04
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.01
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.0
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.93
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.93
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.93
PRK02888	635	nitrous-oxide reductase; Validated	97.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.92
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.92
PRK02888	635	nitrous-oxide reductase; Validated	97.9
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.84
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.78
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.6
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.53
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.53
KOG2395	644	consensus Protein involved in vacuole import and d	97.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.24
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.11
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.1
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.1
COG3391	381	Uncharacterized conserved protein [Function unknow	97.1
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.1
KOG3621	726	consensus WD40 repeat-containing protein [General	97.08
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.92
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.91
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.72
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.7
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.68
KOG2395	644	consensus Protein involved in vacuole import and d	96.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.61
COG3391	381	Uncharacterized conserved protein [Function unknow	96.51
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.46
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.46
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.39
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.32
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.06
PRK13616	591	lipoprotein LpqB; Provisional	95.99
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.97
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.96
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.95
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.67
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.65
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.57
KOG2444	238	consensus WD40 repeat protein [General function pr	95.51
KOG3621	726	consensus WD40 repeat-containing protein [General	95.36
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.33
PRK13616	591	lipoprotein LpqB; Provisional	95.33
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.27
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.23
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.19
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.1
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.93
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.7
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.13
KOG2444	238	consensus WD40 repeat protein [General function pr	93.76
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.71
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.61
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.56
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.48
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	93.45
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.87
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.68
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.18
PHA02713	557	hypothetical protein; Provisional	91.94
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.89
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.85
PRK10115	686	protease 2; Provisional	91.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.71
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	91.12
PHA03098	534	kelch-like protein; Provisional	91.07
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	91.03
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.59
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.54
COG5276	370	Uncharacterized conserved protein [Function unknow	89.08
PHA02713	557	hypothetical protein; Provisional	88.83
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	88.46
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.61
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	86.57
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.45
PHA03098	534	kelch-like protein; Provisional	86.38
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.07
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.0
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.99
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	85.81
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.66
COG5167	776	VID27 Protein involved in vacuole import and degra	85.61
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.68
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.32
PF09826	521	Beta_propel: Beta propeller domain; InterPro: IPR0	83.85
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.44
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	82.72
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.37
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.05
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	81.96
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	81.87
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.66
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	81.62
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	81.17
COG5167	776	VID27 Protein involved in vacuole import and degra	81.03

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=9.5e-50  Score=333.55  Aligned_cols=311  Identities=30%  Similarity=0.504  Sum_probs=275.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      +.+..+++||+|.++|++|.+.|++||++++.++...  ...++..+++|+|..|++++++||.+|+++.++|.|||-..
T Consensus         5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            4557789999999999999999999999999876443  33456889999999999999999999999999999999999


Q ss_pred             CCEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECC-CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672           85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (337)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i  163 (337)
                      .+++.++++.++|.+|.+.+++++++..++|+||.+. +.+.++.+++..||.++|++++.....+||++|. .-|+|+|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~-k~GqvQi  163 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF-KTGQVQI  163 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-ccceEEE
Confidence            9999999999999999999999999999999999998 7799999999999999999999999999999998 4799999


Q ss_pred             EEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672          164 YNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       164 ~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~  236 (337)
                      -|+...+.       .|.+.|.|++++.+|.++||+|..|++|||||..+|++++++++|..++.|++|+||||+.   +
T Consensus       164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s---~  240 (346)
T KOG2111|consen  164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS---W  240 (346)
T ss_pred             EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc---E
Confidence            99976654       3669999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             EEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceee---eeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          237 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL---RNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      ||++|+.||||||.++.....+....+..+...++|+++.+.|+.+.+.+.   +..++++.+.+.+++.+.||+++.+.
T Consensus       241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~  320 (346)
T KOG2111|consen  241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK  320 (346)
T ss_pred             EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence            999999999999999865443321112222334889999999999876553   34566788889999999999999999


Q ss_pred             EecCCCCe
Q 019672          314 FSINNCCE  321 (337)
Q Consensus       314 ~~~~~~~~  321 (337)
                      ++++++++
T Consensus       321 f~~~~~g~  328 (346)
T KOG2111|consen  321 FDPKNGGE  328 (346)
T ss_pred             eccccccc
Confidence            99998875

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=2.3e-47  Score=324.86  Aligned_cols=321  Identities=41%  Similarity=0.638  Sum_probs=278.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .....+..+.||+|...|++|+.+|.++|+.++..+.+.....++.+++++|++.++++++..     ..+.+++.+++.
T Consensus         3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK   77 (391)
T ss_pred             CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence            345678889999999999999999999999999888777777899999999999999999984     348999999999


Q ss_pred             CCEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672           85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (337)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i  163 (337)
                      +..++++.++++|.++.++.++++|+..+.|+|||++++++++++.+. +++.++++++++..++++|++++.+.|.|.+
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            999999999999999999999999999888999999999999999776 8999999999999999999999888999999


Q ss_pred             EEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEE
Q 019672          164 YNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  238 (337)
Q Consensus       164 ~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~la  238 (337)
                      ||+.+.+.+     |++++.|++|+|+|.+|||||+.|++||||.+.+|+++++|+||.....|++|+||||++   +|+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~  234 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA  234 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence            999887653     669999999999999999999999999999999999999999998888899999999999   999


Q ss_pred             EEeCCCcEEEEecCCCcccCCC--Ccc-------cccccccccccceeecccccceeee--------eccCCC--cccCE
Q 019672          239 ATSSSGSLHVFSPGFAINQRRG--GRT-------SSILGSILPESVNEVLDPADHHVLR--------NAFPAG--VKRAS  299 (337)
Q Consensus       239 s~s~dg~v~iw~l~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~w~~~~~~~~~--------~~~~~~--~~~~~  299 (337)
                      +.|+.+|||||.|++....+.-  ...       +.....++|.++.++|+..+.+.-+        +.+..+  ++.++
T Consensus       235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~  314 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR  314 (391)
T ss_pred             EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence            9999999999999876543321  000       1222347788888888876643311        122222  45789


Q ss_pred             EEEEEeCCcEEEEEEecCCCCeeceEEeeeeeeccc
Q 019672          300 VSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK  335 (337)
Q Consensus       300 l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (337)
                      +.+++.||.+++|+++++++++  |.+.+++.++..
T Consensus       315 v~vas~dG~~y~y~l~~~~gGe--c~lik~h~~~~~  348 (391)
T KOG2110|consen  315 VLVASYDGHLYSYRLPPKEGGE--CALIKRHFLDGS  348 (391)
T ss_pred             EEEEEcCCeEEEEEcCCCCCce--eEEEEeeccCCc
Confidence            9999999999999999998876  999898877653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-35  Score=252.18  Aligned_cols=282  Identities=17%  Similarity=0.165  Sum_probs=206.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCC-----------C
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAG-----------E   68 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g-----------~   68 (337)
                      ..+|.++|.|++|+|+|+.|++|+.|. +|+||+++...++....|  -+.++++.+++..++..+-.           .
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            458999999999999999999998775 699999998777765443  34455555544433221110           0


Q ss_pred             -----------------------CC-------CCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--CCeE
Q 019672           69 -----------------------QP-------SLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL--REKT  115 (337)
Q Consensus        69 -----------------------~~-------~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d~~i  115 (337)
                                             .|       .+.||+|+|||+..++++..+..+. +|+++.+-+++++..+  |++|
T Consensus       191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI  270 (480)
T KOG0271|consen  191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI  270 (480)
T ss_pred             cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence                                   00       1347777777777777777665444 7888888766665544  7889


Q ss_pred             EEEECCCCeeeeeecCCCCCceEEEEe---------eCCCc-------------------------cEEEEcCCCCccEE
Q 019672          116 YIYDANTLAILDTIDTVPNLKGLCAFS---------PSLNA-------------------------CFLAVPASTTKGSV  161 (337)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-------------------------~~la~~~~~~dg~v  161 (337)
                      ++|+...++..+++..|.+-...++++         +++.+                         ..+++++  .|.++
T Consensus       271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl  348 (480)
T KOG0271|consen  271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL  348 (480)
T ss_pred             EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence            999888888888887766543334443         11111                         2467666  59999


Q ss_pred             EEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          162 LVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       162 ~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      .+|+....+.      .|+.-|+.+.||||++++|+||-|.+ ||+||.++|+.+..|+ | |-+.|+.++||.|.+   
T Consensus       349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfR-G-Hv~~VYqvawsaDsR---  422 (480)
T KOG0271|consen  349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFR-G-HVAAVYQVAWSADSR---  422 (480)
T ss_pred             EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhh-h-ccceeEEEEeccCcc---
Confidence            9999765542      25588999999999999999999987 6999999999999996 3 367899999999999   


Q ss_pred             EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      +|++||.|.|+++|++++.+-           ..-||..-.+          +.++.+.|++.++++|..|..+++|.
T Consensus       423 LlVS~SkDsTLKvw~V~tkKl-----------~~DLpGh~DE----------Vf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWDVRTKKL-----------KQDLPGHADE----------VFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEEcCCCceEEEEEeeeeee-----------cccCCCCCce----------EEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999987653           2234432222          23445567779999999999999884

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=256.75  Aligned_cols=274  Identities=14%  Similarity=0.155  Sum_probs=217.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      -+...||..+.|++|++.|++|+-.|. +||+..+..++....+|.  +..+.+.+..+.+.++++     +.||++++|
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~-----s~Dgtvklw  246 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA-----SADGTVKLW  246 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee-----ccCCceeee
Confidence            367789999999999999999999986 999999887776665544  444444444234444444     269999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ++.+..++..++++. .|..++|+|++-++++   |.+-++||+++++.+...+.|  ..++..++++++|.+++++|  
T Consensus       247 ~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGG--  322 (459)
T KOG0272|consen  247 KLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGG--  322 (459)
T ss_pred             ccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccC--
Confidence            999999998887664 8999999998766665   899999999999877666654  45788889999999999998  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec-C
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-S  230 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~-d  230 (337)
                      .|..-+|||+++++..     |..+|.+|+|+|+|..|||||.|++ +||||++..+.++++.  .|...|..|.|+| .
T Consensus       323 lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ip--AH~nlVS~Vk~~p~~  399 (459)
T KOG0272|consen  323 LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIP--AHSNLVSQVKYSPQE  399 (459)
T ss_pred             ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecc--cccchhhheEecccC
Confidence            5899999999999865     4599999999999999999999998 6999999888888774  3567799999999 5


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEE
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  310 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~  310 (337)
                      |.   +|+++|.|++++||.-.+....+.           +......+.          .+...+++..+++++.|.+++
T Consensus       400 g~---fL~TasyD~t~kiWs~~~~~~~ks-----------LaGHe~kV~----------s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  400 GY---FLVTASYDNTVKIWSTRTWSPLKS-----------LAGHEGKVI----------SLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             Ce---EEEEcccCcceeeecCCCcccchh-----------hcCCccceE----------EEEeccCCceEEEeccCceee
Confidence            66   999999999999998776544332           111111222          223355668899999999999


Q ss_pred             EEE
Q 019672          311 EYI  313 (337)
Q Consensus       311 ~~~  313 (337)
                      .|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-30  Score=212.81  Aligned_cols=281  Identities=13%  Similarity=0.092  Sum_probs=199.9

Q ss_pred             CCCCCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeCCCC-----cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-----RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ..+|++.|+.++..+.+. .+..++.|. +.+|++..-     .......+  |-+.-+.+..++++...++       .
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-------w   83 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-------W   83 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-------c
Confidence            357899999999998864 456666555 599986543     33333333  3444556666666654333       6


Q ss_pred             CceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC--c
Q 019672           74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--A  147 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  147 (337)
                      |+++++||+.+++....+..+. .|++++++++.-.+++   |++|.+||+... ...++....+..-+.++.++|+  +
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence            9999999999999888876554 7999999886544433   899999998654 3344433332345556666555  7


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      .+++.++  .|++|++||+.+.+..     |++.++.+++||||.++|+|+.||.+ .+||++.++.++.+.   +...|
T Consensus       163 p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~-~LwdL~~~k~lysl~---a~~~v  236 (315)
T KOG0279|consen  163 PIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA-MLWDLNEGKNLYSLE---AFDIV  236 (315)
T ss_pred             cEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE-EEEEccCCceeEecc---CCCeE
Confidence            8888888  7999999999987654     44889999999999999999999984 799999999998884   24679


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCc-ccccccc-cccccceeecccccceeeeeccCCCcccCEE
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR-TSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      .+++|+|+..   +|+.+. +..|+|||++.......... ..+...+ -.|...              .+++.+++.+|
T Consensus       237 ~sl~fspnry---wL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl--------------slaws~dG~tL  298 (315)
T KOG0279|consen  237 NSLCFSPNRY---WLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL--------------SLAWSADGQTL  298 (315)
T ss_pred             eeEEecCCce---eEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEE--------------EEEEcCCCcEE
Confidence            9999999986   666555 44699999987654321100 0000000 011112              23345566899


Q ss_pred             EEEEeCCcEEEEEEe
Q 019672          301 SVITYNGYFVEYIFS  315 (337)
Q Consensus       301 ~~~~~dg~~~~~~~~  315 (337)
                      ++|..||.+++|++.
T Consensus       299 f~g~td~~irv~qv~  313 (315)
T KOG0279|consen  299 FAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeecCCcEEEEEee
Confidence            999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.9e-30  Score=215.37  Aligned_cols=275  Identities=13%  Similarity=0.140  Sum_probs=210.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEE--ccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEM--LYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +.+|.+.|+++.|++|.+++++++.||. .|||.-+..+.+.......-+..+  .++++.++..+       -|+...|
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-------LdN~Csi  123 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-------LDNKCSI  123 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-------cCceeEE
Confidence            4578899999999999999999999985 999988887776666555555544  45555554433       5999999


Q ss_pred             EECCCC--C----EEEEEE-cCCceeEEEEcCCeEE-EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC-CccE
Q 019672           80 FNTTTG--T----ALRELN-FLTSILAVRLNKKRLV-IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACF  149 (337)
Q Consensus        80 wd~~~~--~----~~~~~~-~~~~v~~i~~~~~~~~-v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (337)
                      |++.+.  +    ..+++. |...+.+..|-++..+ .++ |.+.-+||+++++.+..+..|.  ..+.+++..| +...
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~--gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHT--GDVMSLSLSPSDGNT  201 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCc--ccEEEEecCCCCCCe
Confidence            999865  2    223343 3446777877555444 444 7899999999999998887654  4677777777 7778


Q ss_pred             EEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++++.  |+..++||++.+...     |+..|++|+|.|+|.-+||||+|++ .|+||++..+.+..+........|++
T Consensus       202 FvSg~c--D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitS  278 (343)
T KOG0286|consen  202 FVSGGC--DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITS  278 (343)
T ss_pred             EEeccc--ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCcee
Confidence            888885  999999999998755     4589999999999999999999998 69999999999988875555567999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      ++||..|+   +|.+|..|.++.+||.=+++..-           .|.          +|...+..+...|++--+.+|+
T Consensus       279 v~FS~SGR---lLfagy~d~~c~vWDtlk~e~vg-----------~L~----------GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  279 VAFSKSGR---LLFAGYDDFTCNVWDTLKGERVG-----------VLA----------GHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             EEEccccc---EEEeeecCCceeEeeccccceEE-----------Eee----------ccCCeeEEEEECCCCcEEEecc
Confidence            99999999   99999999999999975443311           111          1111222333356678899999


Q ss_pred             eCCcEEEEE
Q 019672          305 YNGYFVEYI  313 (337)
Q Consensus       305 ~dg~~~~~~  313 (337)
                      =|-.+++|.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999984

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-30  Score=229.15  Aligned_cols=271  Identities=15%  Similarity=0.204  Sum_probs=211.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +....|++++||.+|+.||+|..+|+ ++|+.. |.++..  .+.+++..+.+.-.+++++..+       .|+++.+||
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~-------vD~ttilwd  304 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGG-------VDGTTILWD  304 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEecc-------CCccEEEEe
Confidence            45578999999999999999999997 999976 444433  3445555555544455554433       599999999


Q ss_pred             CCCCCEEEEEEcCCce-eEEEEc-CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           82 TTTGTALRELNFLTSI-LAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v-~~i~~~-~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ..+++....+++++.. .+|.|- .+.++.+. |+.|+|+.+....++.++..|.+  .+.++.++|.+.+|++++  .|
T Consensus       305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~S--dD  380 (524)
T KOG0273|consen  305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCS--DD  380 (524)
T ss_pred             ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEec--CC
Confidence            9999998888888755 788884 45555555 89999999988888888877554  588899999999999998  59


Q ss_pred             cEEEEEEccCCccc-----ccCceEEEEeCCC---------CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          159 GSVLVYNVMELHSH-----CEAPLAAIVLSSN---------GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~d---------g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      ++++||.+......     |...|..+.|+|+         +..|++++.|++ +++||+..|.++..|.+  |..+|++
T Consensus       381 ~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVys  457 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYS  457 (524)
T ss_pred             CeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEE
Confidence            99999998766544     3367888888875         447999999997 69999999999999964  4678999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      |+|||+|+   +||+|+.||.|+||++++.+-.+.      +.+.  ...+.-.|+.++              +.|.+.-
T Consensus       458 vafS~~g~---ylAsGs~dg~V~iws~~~~~l~~s------~~~~--~~Ifel~Wn~~G--------------~kl~~~~  512 (524)
T KOG0273|consen  458 VAFSPNGR---YLASGSLDGCVHIWSTKTGKLVKS------YQGT--GGIFELCWNAAG--------------DKLGACA  512 (524)
T ss_pred             EEecCCCc---EEEecCCCCeeEeccccchheeEe------ecCC--CeEEEEEEcCCC--------------CEEEEEe
Confidence            99999999   999999999999999987765331      0000  012344566654              7899999


Q ss_pred             eCCcEEEEEEe
Q 019672          305 YNGYFVEYIFS  315 (337)
Q Consensus       305 ~dg~~~~~~~~  315 (337)
                      +||.+.+.+|.
T Consensus       513 sd~~vcvldlr  523 (524)
T KOG0273|consen  513 SDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEec
Confidence            99998887764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.4e-30  Score=210.41  Aligned_cols=239  Identities=13%  Similarity=0.189  Sum_probs=190.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE--EEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL--CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +-+++.|+.+..+||++.||+++...+|+||+.+++.  +..+  +...+..+.+..++..+..  |+     .|++++|
T Consensus        37 qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT--gs-----eDgt~kI  109 (311)
T KOG0315|consen   37 QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYT--GS-----EDGTVKI  109 (311)
T ss_pred             ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEe--cC-----CCceEEE
Confidence            3467889999999999999999999999999988753  4444  3356777776666666543  32     6999999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ||++...+.+.+.+.++|.++.++|+.  ++++. ++.|++||+......+++- ++....+..++..+++.+++.+.  
T Consensus       110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~n--  186 (311)
T KOG0315|consen  110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAAN--  186 (311)
T ss_pred             EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEec--
Confidence            999998888899999999999999875  44444 7899999998876555543 33345677888889999999887  


Q ss_pred             CccEEEEEEccCCcc-----------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeeccCCcceeEEE
Q 019672          157 TKGSVLVYNVMELHS-----------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~-----------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~  224 (337)
                      ..|...+|++.....           .|...|..+.+|||+++|||+|.|.+ ++||++.+. +....+. + +..-+..
T Consensus       187 nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~-g-h~rWvWd  263 (311)
T KOG0315|consen  187 NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT-G-HQRWVWD  263 (311)
T ss_pred             CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee-c-CCceEEe
Confidence            489999999876432           13378999999999999999999998 599999987 3333332 2 3456999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      ++||.||+   ||++|+.|+++|+|+++.+++.+
T Consensus       264 c~FS~dg~---YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  264 CAFSADGE---YLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eeeccCcc---EEEecCCCCceeecccccCceee
Confidence            99999999   99999999999999999887654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.4e-31  Score=245.22  Aligned_cols=235  Identities=16%  Similarity=0.230  Sum_probs=193.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE---------------------------------EEEeeCCEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC---------------------------------YERAVGAFS   50 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~---------------------------------~~~~~~~~~   50 (337)
                      .....++|+.|++|++.||.|..+. +++|.+.+.++.                                 +..+.++|.
T Consensus       376 nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  376 NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            3467899999999999999999887 699998753210                                 111224555


Q ss_pred             EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeee
Q 019672           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAIL  126 (337)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~  126 (337)
                      -+.+.++.++++.++       .|.++|+|.+.+..++..+..+ .||.++.|+|.+...++   |++.++|.....+++
T Consensus       456 g~sFsPd~rfLlScS-------ED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl  528 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCS-------EDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL  528 (707)
T ss_pred             eeeecccccceeecc-------CCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence            566666666665544       5999999999999998888755 49999999998877766   889999999888888


Q ss_pred             eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRV  201 (337)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~v  201 (337)
                      +.+..|.+  .+-|+.++|+..++|+++  .|.+|++||+.++..+     |+++|.+++|||+|++||+|++||. |++
T Consensus       529 Rifaghls--DV~cv~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~i  603 (707)
T KOG0263|consen  529 RIFAGHLS--DVDCVSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKI  603 (707)
T ss_pred             hhhccccc--ccceEEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEE
Confidence            88876655  455667778888999987  5999999999998754     6699999999999999999999997 689


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ||+.+++.+..+.. | .+.|++|.||.||.   .||+|+.|++|++||+.+...
T Consensus       604 WDl~~~~~v~~l~~-H-t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  604 WDLANGSLVKQLKG-H-TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEcCCCcchhhhhc-c-cCceeEEEEecCCC---EEEecCCCCeEEEEEchhhcc
Confidence            99999999988864 3 77899999999999   999999999999999976544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=8.1e-32  Score=233.26  Aligned_cols=232  Identities=14%  Similarity=0.151  Sum_probs=196.8

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQD--NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~d--g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      -+|...|.++.|+|.  +..+|+|+.|| +++|++++...+..+.+|...+..+.|++++-.+.++     +-|.+-++|
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta-----sfD~tWRlW  288 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA-----SFDSTWRLW  288 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec-----ccccchhhc
Confidence            378899999999998  55799999887 5999999888877776666666566666655555555     369999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+++++.+...+.++ .|.+++|++++-++++   |..-+|||+++++.+-.+..|  ...+.+++++|+|.++|+++  
T Consensus       289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH--~k~I~~V~fsPNGy~lATgs--  364 (459)
T KOG0272|consen  289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH--IKEILSVAFSPNGYHLATGS--  364 (459)
T ss_pred             ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccc--ccceeeEeECCCceEEeecC--
Confidence            999998877665554 8999999999988877   778999999999998888764  55788999999999999998  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      .|++++|||++..+.+     |.+-|+.|.|+| .|.+|+|+|.|++ ++||..+++++++.+. | |..+|.++..+||
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLa-G-He~kV~s~Dis~d  441 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLA-G-HEGKVISLDISPD  441 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhc-C-CccceEEEEeccC
Confidence            5999999999987765     448899999999 7899999999998 6999999999999884 3 4678999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEe
Q 019672          231 MQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~  250 (337)
                      ++   ++++++.|.++++|.
T Consensus       442 ~~---~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  442 SQ---AIATSSFDRTIKLWR  458 (459)
T ss_pred             Cc---eEEEeccCceeeecc
Confidence            99   999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.6e-29  Score=232.70  Aligned_cols=295  Identities=13%  Similarity=0.169  Sum_probs=220.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC--ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~--g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      -++.+|..++||..|.++|.|+.+  .+-||+..+..-++..+.|-..+.++.++++...+++|+     .|++|+|||.
T Consensus       305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-----eDgKVKvWn~  379 (893)
T KOG0291|consen  305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-----EDGKVKVWNT  379 (893)
T ss_pred             cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc-----CCCcEEEEec
Confidence            356789999999999999999887  358999988887777776666666777777655555553     6999999999


Q ss_pred             CCCCEEEEEEcC-CceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           83 TTGTALRELNFL-TSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ..|-|+.+++-+ +.|+++.|+..+.++  +. ||+|+.||+...+..+++.. +.+....+++.+|-+.+++.++. ..
T Consensus       380 ~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~-d~  457 (893)
T KOG0291|consen  380 QSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQ-DS  457 (893)
T ss_pred             cCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeecc-ce
Confidence            999999998654 589999997654333  22 99999999999888888865 56677788888887877776664 45


Q ss_pred             cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCC
Q 019672          159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      -.|+||++++++.+     |++||.+++|+|+|..||+||-|.+ ||+||+-... ...++.   ....+..++|+|||+
T Consensus       458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPDGK  533 (893)
T ss_pred             EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCCCC
Confidence            67999999999875     6799999999999999999999998 6999986542 233343   244689999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccc---cceeeeeccCCCcccCEEEEEEeCCcE
Q 019672          233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPA---DHHVLRNAFPAGVKRASVSVITYNGYF  309 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~~  309 (337)
                         -||++..||.|.+||++...+.-..+......++...   .+.....   ... .-..+...+|++.|++|+....+
T Consensus       534 ---elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~---~D~~ta~~sa~~K-~Ftti~ySaDG~~IlAgG~sn~i  606 (893)
T KOG0291|consen  534 ---ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKE---TDRITAENSAKGK-TFTTICYSADGKCILAGGESNSI  606 (893)
T ss_pred             ---eEEEEEecceEEEEEhhhceeeccccchhhccccccc---cceeehhhcccCC-ceEEEEEcCCCCEEEecCCcccE
Confidence               9999999999999999876654322111111111000   0111110   000 01233446788999999999999


Q ss_pred             EEEEEecC
Q 019672          310 VEYIFSIN  317 (337)
Q Consensus       310 ~~~~~~~~  317 (337)
                      -+|.++++
T Consensus       607 CiY~v~~~  614 (893)
T KOG0291|consen  607 CIYDVPEG  614 (893)
T ss_pred             EEEECchh
Confidence            99988654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.2e-28  Score=200.58  Aligned_cols=262  Identities=13%  Similarity=0.132  Sum_probs=200.2

Q ss_pred             CEEEEEcCC-ceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--EEEEEEcC
Q 019672           20 SGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELNFL   94 (337)
Q Consensus        20 ~~la~g~~~-g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--~~~~~~~~   94 (337)
                      -+|++++-| .+|+|...+|+...+.+.  ..+.-+++.++...++..+        .-.||+||+.++.  ++.+++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence            356776665 479999999999887754  4566678888777776554        4689999998876  57888776


Q ss_pred             -CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 -TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 -~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                       .+|.++.|..++-...+   |++++|||++.....+.++.. .  .+.++.++|+...|+++.  .+|.|++||+....
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-s--pVn~vvlhpnQteLis~d--qsg~irvWDl~~~~  157 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-S--PVNTVVLHPNQTELISGD--QSGNIRVWDLGENS  157 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-C--CcceEEecCCcceEEeec--CCCcEEEEEccCCc
Confidence             58999999877655544   899999999997777666543 3  355666677777888877  58999999998765


Q ss_pred             cccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec----cCCcceeEEEEEeecCCCcccEEEEE
Q 019672          171 SHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR----RGTYPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       171 ~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~fs~dg~~~~~las~  240 (337)
                      ..++      .+|.++++.|||++|+.+...|+. .+|++.+++....+.    ...|...|..+.||||++   +||++
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c-yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---~lat~  233 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC-YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---YLATC  233 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCccE-EEEEccCCCccccceEhhheecccceEEEEEECCCCc---EEEee
Confidence            4433      789999999999999999999995 799998765332221    123455689999999999   99999


Q ss_pred             eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          241 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       241 s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      |.|.+++||+++..-.          +...+......+|+.++          ..++.+|++++.|+..++|.+...+
T Consensus       234 ssdktv~iwn~~~~~k----------le~~l~gh~rWvWdc~F----------S~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDFFK----------LELVLTGHQRWVWDCAF----------SADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             cCCceEEEEecCCcee----------eEEEeecCCceEEeeee----------ccCccEEEecCCCCceeecccccCc
Confidence            9999999999876511          11122233356888866          6778999999999999999886554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.3e-28  Score=197.49  Aligned_cols=234  Identities=15%  Similarity=0.228  Sum_probs=183.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEE-EEcCCceEEEeCCCCcEEEEEeeCCEEEE--EEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFA-LSTKDGFKIFDSSTGRLCYERAVGAFSIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la-~g~~~g~~vw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..++++|+.+.||-||++.+ +|++..+++||...+.++.+...++..+.  ...++...++.+++       |+.+.+|
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------Dk~v~vw   86 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------DKAVQVW   86 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------CceEEEE
Confidence            46788999999999999955 45555679999999999888766665554  45556666555444       9999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCC--CeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANT--LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      |+.+|+.++.+..+ ..|..++|+...-++++   |.++++||-+.  .++++.+....  .++.++..+.  ..++. |
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~~--heIva-G  161 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVAE--HEIVA-G  161 (307)
T ss_pred             EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEecc--cEEEe-e
Confidence            99999999998755 58999999988776665   88999999865  46676665433  3555555542  24444 4


Q ss_pred             CCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-EEEEEeecC
Q 019672          155 STTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLSFGQS  230 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~fs~d  230 (337)
                      + .||+++.||++.++....   .||+|++|++||+....++-|++ +|+.|-.+|+.++.++ |+...+ =..++++..
T Consensus       162 S-~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYk-Ghkn~eykldc~l~qs  238 (307)
T KOG0316|consen  162 S-VDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQS  238 (307)
T ss_pred             c-cCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhc-ccccceeeeeeeeccc
Confidence            4 699999999999987654   89999999999999999999997 6999999999998885 443322 345678877


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCc
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ..   .+++||.||.|.+|||....
T Consensus       239 dt---hV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  239 DT---HVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             ce---eEEeccCCceEEEEEeccce
Confidence            77   89999999999999997654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.4e-27  Score=207.05  Aligned_cols=272  Identities=18%  Similarity=0.210  Sum_probs=202.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|++++|++++.++ +++|++.+++.......+  .+..+.+..+.+.+++++       .++.|++|
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i~   78 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-------SDKTIRLW   78 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-------CCCeEEEE
Confidence            46889999999999999999998666 699999888765554433  333444544444555444       48999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+.+++.+..+..+. .+.++.++++  .++++. ++.+++||+++++....+..+.  ..+.++.+++++.++++++  
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--  154 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSS--  154 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEc--
Confidence            999887777776544 8999999875  333444 8899999999888877776443  3566777777777887765  


Q ss_pred             CccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          157 TKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      .+|.|.+||+.+.+...     ..+|.+++|+|+++.+++++.||. |++||+.+++.+..+..  +...|.+++|+|++
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~  231 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG  231 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence            48999999998765432     368999999999999999999997 69999999888877642  34579999999998


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  311 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~  311 (337)
                      .   ++++++.||.|++|++.+......       +......              ...+.+.++++.+++++.||.+++
T Consensus       232 ~---~~~~~~~~~~i~i~~~~~~~~~~~-------~~~~~~~--------------i~~~~~~~~~~~l~~~~~d~~i~i  287 (289)
T cd00200         232 Y---LLASGSEDGTIRVWDLRTGECVQT-------LSGHTNS--------------VTSLAWSPDGKRLASGSADGTIRI  287 (289)
T ss_pred             c---EEEEEcCCCcEEEEEcCCceeEEE-------ccccCCc--------------EEEEEECCCCCEEEEecCCCeEEe
Confidence            7   888888899999999976443221       0000000              111222444588999999999999


Q ss_pred             EE
Q 019672          312 YI  313 (337)
Q Consensus       312 ~~  313 (337)
                      |+
T Consensus       288 w~  289 (289)
T cd00200         288 WD  289 (289)
T ss_pred             cC
Confidence            84

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5e-28  Score=222.90  Aligned_cols=274  Identities=12%  Similarity=0.135  Sum_probs=220.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ...|++.+|++.-..|++|...|+ .+|.+....+++........+..+.++  ++.+++.++      .-+.+-||+++
T Consensus       265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWq  338 (893)
T KOG0291|consen  265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQ  338 (893)
T ss_pred             ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEee
Confidence            378999999999999999999996 899999999999887666666666666  788888765      36799999999


Q ss_pred             CCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           84 TGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        84 ~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      +..-+.+...+ ..+.+++++|++..+++   |++|+|||...+-++.++..|..  ++.++.+...+..+.+++  -||
T Consensus       339 sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssS--LDG  414 (893)
T KOG0291|consen  339 SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSS--LDG  414 (893)
T ss_pred             ccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEee--cCC
Confidence            98887776644 47999999999766665   89999999999999999876544  677788877788888877  599


Q ss_pred             EEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          160 SVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      +|+.||+...+...+      ....|++.+|.|..+..|+.|.=-|.||++++|+.+-.+. | |.++|.+++|+|+|. 
T Consensus       415 tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-G-HEgPVs~l~f~~~~~-  491 (893)
T KOG0291|consen  415 TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-G-HEGPVSGLSFSPDGS-  491 (893)
T ss_pred             eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-C-CCCcceeeEEccccC-
Confidence            999999987665433      4568999999999999999997668999999999998874 4 478999999999999 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        .||++|.|.||++||+=......          ..++ ...+          +..+.+.|+++.|++.+.||.+.+|+
T Consensus       492 --~LaS~SWDkTVRiW~if~s~~~v----------Etl~-i~sd----------vl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  492 --LLASGSWDKTVRIWDIFSSSGTV----------ETLE-IRSD----------VLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             --eEEeccccceEEEEEeeccCcee----------eeEe-eccc----------eeEEEEcCCCCeEEEEEecceEEEEE
Confidence              99999999999999984321100          0000 0011          12344577889999999999999998


Q ss_pred             Eec
Q 019672          314 FSI  316 (337)
Q Consensus       314 ~~~  316 (337)
                      ...
T Consensus       549 ~~~  551 (893)
T KOG0291|consen  549 IKE  551 (893)
T ss_pred             hhh
Confidence            753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=4.9e-28  Score=199.88  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=179.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|...|..+..++||+++.+++.|+ +++||+.+++....+.+|  .+..+++..+...  +++|     +.|++|++
T Consensus        59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q--ivSG-----SrDkTikl  131 (315)
T KOG0279|consen   59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ--IVSG-----SRDKTIKL  131 (315)
T ss_pred             eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce--eecC-----CCcceeee
Confidence            346788899999999999988888877 599999999765555444  4444555444444  4555     37999999


Q ss_pred             EECCCCCEEEEEE-c--CCceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           80 FNTTTGTALRELN-F--LTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        80 wd~~~~~~~~~~~-~--~~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ||...+ +..++. .  ..=|.++.|+|+  ..+++.   |+++++||+++.+..+.+..+.  ..+..+..+||+.+++
T Consensus       132 wnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~--~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  132 WNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS--GYVNTVTVSPDGSLCA  208 (315)
T ss_pred             eeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc--ccEEEEEECCCCCEEe
Confidence            998754 444443 2  234899999987  344433   9999999999988877776544  4566777788999999


Q ss_pred             EcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc-------ce
Q 019672          152 VPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-------PS  220 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~-------~~  220 (337)
                      ++|  .||.+.+||+..++....    .+|++++|+|+...|+.+...+  |+|||+.++..+.+++....       ..
T Consensus       209 sGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~d~~g~s~~~~~~  284 (315)
T KOG0279|consen  209 SGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKLDGIGPSSKAGDP  284 (315)
T ss_pred             cCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccccccccccccCCc
Confidence            988  599999999998886543    8899999999988888777654  79999999998877653211       12


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ...+++||+||+   .|.+|-.|+.|++|.+.
T Consensus       285 ~clslaws~dG~---tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  285 ICLSLAWSADGQ---TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEEEEcCCCc---EEEeeecCCcEEEEEee
Confidence            367899999999   99999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=3.2e-27  Score=209.88  Aligned_cols=277  Identities=16%  Similarity=0.177  Sum_probs=219.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-----eCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      ..|..-|.|+.|+|||++||+.+.|+ +.+||=.+++++..+.     .+++.-+.+.+++..++.+++       |.++
T Consensus       187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt~  259 (603)
T KOG0318|consen  187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-------DKTI  259 (603)
T ss_pred             cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC-------CceE
Confidence            35667899999999999999776665 7999999999887654     356777788888888888876       9999


Q ss_pred             EEEECCCCCEEEEEEcCCce----eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           78 CLFNTTTGTALRELNFLTSI----LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v----~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +|||..+++++.++.....|    ..+.|.++.++.+. +|.|.+++...+..++.+..|  ...+.+++.++++.++.+
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~S  337 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYS  337 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEe
Confidence            99999999999999876643    44556677777666 999999999999888888755  457888999999999999


Q ss_pred             cCCCCccEEEEEEccCCccc------cc----------------------------------------------------
Q 019672          153 PASTTKGSVLVYNVMELHSH------CE----------------------------------------------------  174 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~------~~----------------------------------------------------  174 (337)
                      +++  ||.|.-||..++..-      |.                                                    
T Consensus       338 gsy--DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  338 GSY--DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             ecc--CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence            885  999999998543210      00                                                    


Q ss_pred             ----------------------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          175 ----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       175 ----------------------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                                                  ....+++++|+++.+|.|++||. ++||.+..+++..+.....|+++|++++
T Consensus       416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~va  494 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVA  494 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEE
Confidence                                        12368999999999999999998 6999998776544433334678899999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  306 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d  306 (337)
                      ||||+.   |||++...+.|-+||+.......                  ..|.+  |....+.+++.|++.++++|+.|
T Consensus       495 ySpd~~---yla~~Da~rkvv~yd~~s~~~~~------------------~~w~F--HtakI~~~aWsP~n~~vATGSlD  551 (603)
T KOG0318|consen  495 YSPDGA---YLAAGDASRKVVLYDVASREVKT------------------NRWAF--HTAKINCVAWSPNNKLVATGSLD  551 (603)
T ss_pred             ECCCCc---EEEEeccCCcEEEEEcccCceec------------------ceeee--eeeeEEEEEeCCCceEEEecccc
Confidence            999999   99999999999999987654311                  12322  33445666777777999999999


Q ss_pred             CcEEEEEEe
Q 019672          307 GYFVEYIFS  315 (337)
Q Consensus       307 g~~~~~~~~  315 (337)
                      -.+.+|+++
T Consensus       552 t~Viiysv~  560 (603)
T KOG0318|consen  552 TNVIIYSVK  560 (603)
T ss_pred             ceEEEEEcc
Confidence            999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.9e-28  Score=225.05  Aligned_cols=277  Identities=16%  Similarity=0.237  Sum_probs=205.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +...|.++.|+++|+.+++++.++ +++|+.++++  ++.....+...+..+.|.++...++++     +.|++|+|||+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-----s~D~tiriwd~  232 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-----SDDKTLRIWDL  232 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-----cCCceEEEeec
Confidence            367899999999999999887777 5999997777  555544444444444444444344444     26999999999


Q ss_pred             -CCCCEEEEEEc-CCceeEEEEcCCeE-EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 -TTGTALRELNF-LTSILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 -~~~~~~~~~~~-~~~v~~i~~~~~~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                       ..+..++++.. ...|.++.|+++.. ++..  |++|+|||+++++.+..+..+.+  .+.++++++++.++++++  .
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~--~is~~~f~~d~~~l~s~s--~  308 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD--GISGLAFSPDGNLLVSAS--Y  308 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC--ceEEEEECCCCCEEEEcC--C
Confidence             55577787754 45899999998773 3333  88999999999999999987655  677788888999999987  4


Q ss_pred             ccEEEEEEccCCcc--cc-----c-C-ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEe
Q 019672          158 KGSVLVYNVMELHS--HC-----E-A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSF  227 (337)
Q Consensus       158 dg~v~i~d~~~~~~--~~-----~-~-~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~f  227 (337)
                      ||.|+|||+.++..  ..     . . +++++.|+|+|.+|++++.|++ +++||+..+..+..+...... ..+.+..+
T Consensus       309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~  387 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSPTL  387 (456)
T ss_pred             CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecccc
Confidence            99999999999882  21     1 3 6999999999999999999997 699999999988877543322 25666777


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE--e
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT--Y  305 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~  305 (337)
                      +++++   ++.+|+.|+.|++|++.+.......+...      .+......|++              ..+.+++.+  .
T Consensus       388 ~~~~~---~i~sg~~d~~v~~~~~~s~~~~~~l~~h~------~~~~~~~~~~~--------------~~~~~~s~s~~~  444 (456)
T KOG0266|consen  388 STGGK---LIYSGSEDGSVYVWDSSSGGILQRLEGHS------KAAVSDLSSHP--------------TENLIASSSFEG  444 (456)
T ss_pred             cCCCC---eEEEEeCCceEEEEeCCccchhhhhcCCC------CCceeccccCC--------------CcCeeeecCcCC
Confidence            89999   99999999999999998754433211110      11112223333              336666666  6


Q ss_pred             CCcEEEEEEe
Q 019672          306 NGYFVEYIFS  315 (337)
Q Consensus       306 dg~~~~~~~~  315 (337)
                      |+.+++|..+
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8999999654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.97  E-value=5.2e-28  Score=201.60  Aligned_cols=274  Identities=14%  Similarity=0.126  Sum_probs=203.0

Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEEEEeeCCEEEEEEcc--CCCEEEEEeCCCCCCCCCce
Q 019672            1 MSNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLY--SSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         1 ~~~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~d~~   76 (337)
                      |-.+.|+++|+.+.|+|+|++||+|+.|. +.+|++..- +......+|.-++.++.+  +++.+..++       .|++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-------tDk~  113 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-------TDKT  113 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-------CCce
Confidence            34678999999999999999999998876 589996443 333344455555555544  455555444       5999


Q ss_pred             EEEEECCCCCEEEEEEcCCce-eEEEEcCCe-EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           77 LCLFNTTTGTALRELNFLTSI-LAVRLNKKR-LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~~~v-~~i~~~~~~-~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      |+.||.++|+.+.....+..+ ..+.....+ .++++   |+++++||++....++++.   +...+.++.+...+..+.
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cceeEEEEEeccccccee
Confidence            999999999999998877654 444433322 33333   7899999999887776663   445688899988888888


Q ss_pred             EcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC----ceeEeeccCCccee-
Q 019672          152 VPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTYPST-  221 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~----~~~~~~~~~~~~~~-  221 (337)
                      ++|  -|+.|++||++.....+     ..+|+.+..+|+|.++.+-+.|.+ +|+||++..    .++..+..+.|.-+ 
T Consensus       191 sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 SGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             ecc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence            888  59999999998877553     489999999999999999999987 699999743    23555543333322 


Q ss_pred             -EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          222 -IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       222 -i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                       ...++|||++.   ++.+|+.|..+++||.....           +.-.+|.          +...++.+.|.|...-|
T Consensus       268 nlL~cswsp~~~---~i~ags~dr~vyvwd~~~r~-----------~lyklpG----------h~gsvn~~~Fhp~e~ii  323 (338)
T KOG0265|consen  268 NLLKCSWSPNGT---KITAGSADRFVYVWDTTSRR-----------ILYKLPG----------HYGSVNEVDFHPTEPII  323 (338)
T ss_pred             hcceeeccCCCC---ccccccccceEEEeeccccc-----------EEEEcCC----------cceeEEEeeecCCCcEE
Confidence             56679999999   99999999999999975321           1112332          33345666677887889


Q ss_pred             EEEEeCCcEEE
Q 019672          301 SVITYNGYFVE  311 (337)
Q Consensus       301 ~~~~~dg~~~~  311 (337)
                      .++++|.+++.
T Consensus       324 ls~~sdk~i~l  334 (338)
T KOG0265|consen  324 LSCSSDKTIYL  334 (338)
T ss_pred             EEeccCceeEe
Confidence            99999998875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=2.8e-29  Score=216.71  Aligned_cols=273  Identities=11%  Similarity=0.144  Sum_probs=208.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      -+-+|..+.|.|+|+.|++|++.| |.+||..+..  .+...+...+..+.++++...  ++++.     .++.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~w--miSgD-----~gG~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTW--MISGD-----KGGMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCE--EEEcC-----CCceEEeccc
Confidence            345799999999999999999987 7999976553  233333344555555555544  45542     5899999998


Q ss_pred             CCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           83 TTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ..+-......++ ..|++++|+++.  ++.++ |++|+|||....+....+..|  .-.+-++.++|...++|++|.  |
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH--gwdVksvdWHP~kgLiasgsk--D  243 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH--GWDVKSVDWHPTKGLIASGSK--D  243 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC--CCCcceeccCCccceeEEccC--C
Confidence            765433333444 689999998754  44455 889999999887776677554  345667788888889999884  7


Q ss_pred             cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      ..|++||.+++.++     |+..|..+.|+|++++|+|+|.|.. ++++|+++.+.+.+++ + |+..|.+++|+|-.. 
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r-~-Hkkdv~~~~WhP~~~-  319 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYR-G-HKKDVTSLTWHPLNE-  319 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhh-c-chhhheeeccccccc-
Confidence            89999999999876     4589999999999999999999986 6999999888888875 3 356799999999877 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                       ++|.+|+.||.|..|.+...++          ++...+....++|+.+-          +|-+.-|++|+.|.+++.|.
T Consensus       320 -~lftsgg~Dgsvvh~~v~~~~p----------~~~i~~AHd~~iwsl~~----------hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  320 -SLFTSGGSDGSVVHWVVGLEEP----------LGEIPPAHDGEIWSLAY----------HPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -cceeeccCCCceEEEecccccc----------ccCCCcccccceeeeec----------cccceeEeecCCCcceeeec
Confidence             5999999999999999874443          22233344566787754          33446788899999999996


Q ss_pred             E
Q 019672          314 F  314 (337)
Q Consensus       314 ~  314 (337)
                      -
T Consensus       379 r  379 (464)
T KOG0284|consen  379 R  379 (464)
T ss_pred             c
Confidence            5

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.1e-26  Score=232.88  Aligned_cols=283  Identities=15%  Similarity=0.146  Sum_probs=195.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC----cE----EEEEe-eCCEEEEEEcc-CCCEEEEEeCCCCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RL----CYERA-VGAFSIVEMLY-SSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~----~~----~~~~~-~~~~~~~~~~~-~~~~~~~~~~g~~~~~~   73 (337)
                      .+.+.|++++|+|+|++||+|+.++ ++||++...    ..    ..... ...+..+.+.. ..+.++.++       .
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~  553 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------F  553 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------C
Confidence            4678899999999999999998877 699997542    11    11111 12233334332 234444333       4


Q ss_pred             CceEEEEECCCCCEEEEEEc-CCceeEEEEcC-C--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee-CCCc
Q 019672           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP-SLNA  147 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  147 (337)
                      |++|++||+.+++.+..+.. ...|.++.|++ +  .++.++ |+.|++||+++++.+..+..+   ..++++.+ .+++
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g  630 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESG  630 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCC
Confidence            99999999999988887754 45899999985 3  344444 889999999998888777643   24556665 3467


Q ss_pred             cEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC------ceeEeecc
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRR  215 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~------~~~~~~~~  215 (337)
                      .++++++  .||.|++||+++.+.      .|...|.++.|. ++.+|++++.|++ |+|||+..+      +.+..+. 
T Consensus       631 ~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~-  705 (793)
T PLN00181        631 RSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFM-  705 (793)
T ss_pred             CEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEc-
Confidence            7888887  599999999987542      244789999997 7789999999998 699999753      4556664 


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  295 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  295 (337)
                      + |...+.+++|+|+++   +||+|+.|++|+||+........      .+..... ...... ....+...+..+.+.+
T Consensus       706 g-h~~~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~~~~~~------s~~~~~~-~~~~~~-~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        706 G-HTNVKNFVGLSVSDG---YIATGSETNEVFVYHKAFPMPVL------SYKFKTI-DPVSGL-EVDDASQFISSVCWRG  773 (793)
T ss_pred             C-CCCCeeEEEEcCCCC---EEEEEeCCCEEEEEECCCCCceE------EEecccC-Cccccc-ccCCCCcEEEEEEEcC
Confidence            2 355688999999999   99999999999999976543211      0000000 000000 0011112334444566


Q ss_pred             ccCEEEEEEeCCcEEEEEE
Q 019672          296 KRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       296 ~~~~l~~~~~dg~~~~~~~  314 (337)
                      ++..|++++.||.+++|++
T Consensus       774 ~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        774 QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCeEEEecCCCcEEEEec
Confidence            6789999999999999986

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=2.2e-27  Score=197.21  Aligned_cols=224  Identities=12%  Similarity=0.125  Sum_probs=178.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--c----EEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--R----LCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      =|..++|+|.|+++|+|+-|.. .||++.+.  +    ...+...|.  +.++.+.. .+.++..+|       |.+..+
T Consensus        99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG-------D~TCal  170 (343)
T KOG0286|consen   99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG-------DMTCAL  170 (343)
T ss_pred             eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCC-------CceEEE
Confidence            3788999999999999887665 99998755  2    222333333  33444443 333444443       999999


Q ss_pred             EECCCCCEEEEEEcC-CceeEEEEcC-Ce--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           80 FNTTTGTALRELNFL-TSILAVRLNK-KR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        80 wd~~~~~~~~~~~~~-~~v~~i~~~~-~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      ||+++++.+..+..+ ..|.++.+.| +.  ++.+. |...++||++.+...++|..+..  .+.++.+.|++.-+++++
T Consensus       171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--DINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--DINSVRFFPSGDAFATGS  248 (343)
T ss_pred             EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc--ccceEEEccCCCeeeecC
Confidence            999999999988755 4899999987 33  33333 89999999999999999976654  677788888888999887


Q ss_pred             CCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                        +|++.++||++..+.+..       .+|++++||..|++|.+|..|.+ +.+||.-.++.+..+. + |...|.||..
T Consensus       249 --DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~-c~vWDtlk~e~vg~L~-G-HeNRvScl~~  323 (343)
T KOG0286|consen  249 --DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT-CNVWDTLKGERVGVLA-G-HENRVSCLGV  323 (343)
T ss_pred             --CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc-eeEeeccccceEEEee-c-cCCeeEEEEE
Confidence              699999999998765422       78999999999999999999998 5899999999988875 3 4678999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEe
Q 019672          228 GQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +|||.   -+++||.|.+++||.
T Consensus       324 s~DG~---av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  324 SPDGM---AVATGSWDSTLRIWA  343 (343)
T ss_pred             CCCCc---EEEecchhHheeecC
Confidence            99999   999999999999994

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=203.82  Aligned_cols=285  Identities=16%  Similarity=0.124  Sum_probs=215.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ++|.+=|.|+++.|-.++|++|+.|+. +|||+.++++..+..++  .+.-+.+.....++..++       .|+.|+.|
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-------edk~VKCw  220 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-------EDKQVKCW  220 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-------CCCeeEEE
Confidence            467778999999999999999999885 99999999998887643  344455555556665544       49999999


Q ss_pred             ECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |++.++.|+.+-. -+.|.+++++|..  ++.++ |..++|||+++...++.+..|.++..  .+...|.+..+++++  
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~--~V~~~~~dpqvit~S--  296 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA--SVMCQPTDPQVITGS--  296 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce--eEEeecCCCceEEec--
Confidence            9999999988754 4689999998754  44444 88999999999999999988877544  334444455778877  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      .|++|++||+..++..     |+..|.+++.+|....+|++|.|.  |+-|++..|..+..+.  .+.+.|++|+...||
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nls--gh~~iintl~~nsD~  372 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLS--GHNAIINTLSVNSDG  372 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhccc--cccceeeeeeeccCc
Confidence            5999999999988764     348899999999999999999994  6999999999988864  246789999999998


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  311 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~  311 (337)
                          ++++|++.|.+.+||.+.+.+-.+.      -..+.|....   +.++    ..+..+..-+.+|+++-.|.+|++
T Consensus       373 ----v~~~G~dng~~~fwdwksg~nyQ~~------~t~vqpGSl~---sEag----I~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  373 ----VLVSGGDNGSIMFWDWKSGHNYQRG------QTIVQPGSLE---SEAG----IFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             ----eEEEcCCceEEEEEecCcCcccccc------cccccCCccc---cccc----eeEEeecccCceEEeccCCcceEE
Confidence                7999999999999999877653321      0011121110   1010    011112334578999999999999


Q ss_pred             EEEecCCCC
Q 019672          312 YIFSINNCC  320 (337)
Q Consensus       312 ~~~~~~~~~  320 (337)
                      |.-|.+...
T Consensus       436 ~keDe~aT~  444 (460)
T KOG0285|consen  436 YKEDEHATE  444 (460)
T ss_pred             EecccccCc
Confidence            988766443

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.2e-28  Score=206.54  Aligned_cols=232  Identities=15%  Similarity=0.180  Sum_probs=190.6

Q ss_pred             CCCCCCCeEEEEEcC-----CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            3 NQSSSYPVFFVSFNQ-----DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~-----dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      +.+|+..|++++|.|     ..++||+++.|+ ++|||+..+..++....|...+.++.+.+..+++.+.      .|++
T Consensus       196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS------~Drt  269 (480)
T KOG0271|consen  196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS------QDRT  269 (480)
T ss_pred             ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC------CCce
Confidence            568899999999965     667899999887 6999999999998888887777788888887777665      6999


Q ss_pred             EEEEECCCCCEEEEEEcCC-ceeEEEEc-------------CC-------------------------eEEEEE-CCeEE
Q 019672           77 LCLFNTTTGTALRELNFLT-SILAVRLN-------------KK-------------------------RLVIVL-REKTY  116 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~~-~v~~i~~~-------------~~-------------------------~~~v~~-d~~i~  116 (337)
                      |++|+...|++..++..+. -|..++++             .+                         +++.+. |.+++
T Consensus       270 Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlf  349 (480)
T KOG0271|consen  270 IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLF  349 (480)
T ss_pred             EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEE
Confidence            9999999999888876554 57777766             22                         244455 66999


Q ss_pred             EEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEE
Q 019672          117 IYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIA  190 (337)
Q Consensus       117 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~la  190 (337)
                      +|+-.. .+++..+..|..  -+..++++||+.++|+++.  |..|++||.++++.+     |-.+|..++|+.|.++|+
T Consensus       350 lW~p~~~kkpi~rmtgHq~--lVn~V~fSPd~r~IASaSF--DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlV  425 (480)
T KOG0271|consen  350 LWNPFKSKKPITRMTGHQA--LVNHVSFSPDGRYIASASF--DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLV  425 (480)
T ss_pred             Eecccccccchhhhhchhh--heeeEEECCCccEEEEeec--ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEE
Confidence            998743 345556555443  4667777889999999984  999999999999875     448999999999999999


Q ss_pred             EEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          191 TASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       191 t~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +||.|.+ +++||+++.+....+. | |..+|+++.|+|||+   .+++|+.|..+++|.
T Consensus       426 S~SkDsT-LKvw~V~tkKl~~DLp-G-h~DEVf~vDwspDG~---rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  426 SGSKDST-LKVWDVRTKKLKQDLP-G-HADEVFAVDWSPDGQ---RVASGGKDKVLRLWR  479 (480)
T ss_pred             EcCCCce-EEEEEeeeeeecccCC-C-CCceEEEEEecCCCc---eeecCCCceEEEeec
Confidence            9999988 6999999998887774 3 466899999999999   999999999999994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=203.02  Aligned_cols=274  Identities=14%  Similarity=0.140  Sum_probs=209.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .++..+|+.+-|+|+--..++++++. +++||..++++.....++.-.+..+.++.....+++.     +.|-.+++||.
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tc-----SsDl~~~LWd~  179 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATC-----SSDLSAKLWDF  179 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEec-----CCccchhheeH
Confidence            35678899999999999888888876 6999999999876665555455566666555545554     25777999999


Q ss_pred             CC-CCEEEEE-EcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 TT-GTALREL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 ~~-~~~~~~~-~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      .+ .+++... .+...|.++.+-|  ++++.++ |++|+.|++.++..+.++..+.+  -+-.+.++.|+.++|+++  .
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s--~  255 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCS--N  255 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecC--C
Confidence            76 3444433 3445677787754  5555555 89999999999999999976644  566778888999999988  5


Q ss_pred             ccEEEEEEccCCcc-----cccCceEEEEeCCC---------------CCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          158 KGSVLVYNVMELHS-----HCEAPLAAIVLSSN---------------GMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       158 dg~v~i~d~~~~~~-----~~~~~i~~~~~s~d---------------g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      |.+|++|-+.+...     .|+.+|.|++|-|.               |.+++++|.|++ ||+||+.+|.++.++. + 
T Consensus       256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~-g-  332 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLV-G-  332 (406)
T ss_pred             CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEe-c-
Confidence            99999999988743     25699999999653               358999999997 7999999999999884 3 


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCccc
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR  297 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  297 (337)
                      |..-|..++|+|.|+   ||+++.+|++++|||++.....+..+..         +            .+++.+.+....
T Consensus       333 hdnwVr~~af~p~Gk---yi~ScaDDktlrvwdl~~~~cmk~~~ah---------~------------hfvt~lDfh~~~  388 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGK---YILSCADDKTLRVWDLKNLQCMKTLEAH---------E------------HFVTSLDFHKTA  388 (406)
T ss_pred             ccceeeeeEEcCCCe---EEEEEecCCcEEEEEeccceeeeccCCC---------c------------ceeEEEecCCCC
Confidence            456799999999999   9999999999999999876654421111         1            122333334444


Q ss_pred             CEEEEEEeCCcEEEEE
Q 019672          298 ASVSVITYNGYFVEYI  313 (337)
Q Consensus       298 ~~l~~~~~dg~~~~~~  313 (337)
                      .++++|+-|-++++|.
T Consensus       389 p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  389 PYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceEEeccccceeeeee
Confidence            6899999999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-25  Score=189.03  Aligned_cols=238  Identities=12%  Similarity=0.161  Sum_probs=186.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      -..+|+++.|+++|.++++++++ .+++||..+++++.....  .++..+++.+.++.++..+..     .|.+||..++
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLsl   87 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLSL   87 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-----CCCceEEEEe
Confidence            35789999999999999987765 679999999988766543  577788898888888777663     5899999999


Q ss_pred             CCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           83 TTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        83 ~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      .+++.++-+..+. .|..+..+|..  ++.++ |++|++||++..+.+..+.....  .++|  ++|.|.++|.+..  .
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~A--fDp~GLifA~~~~--~  161 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAA--FDPEGLIFALANG--S  161 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--ccee--ECCCCcEEEEecC--C
Confidence            9999999987665 79999998743  33333 99999999998777666654332  3444  4567778887763  4


Q ss_pred             cEEEEEEccCCccc-------c---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-EEEEEe
Q 019672          159 GSVLVYNVMELHSH-------C---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLSF  227 (337)
Q Consensus       159 g~v~i~d~~~~~~~-------~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~l~f  227 (337)
                      +.|++||+++....       .   ....+.+.|||||++|..+...+. +++.|.-+|..+.++........ -.+.+|
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            48999999876322       1   267899999999999999888875 78999999999888854332221 246789


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      +||++   ++.+|+.||+|++|+++++....
T Consensus       241 tPds~---Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  241 TPDSK---FVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             CCCCc---EEEEecCCCcEEEEEcCCCcEee
Confidence            99999   99999999999999998876643

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-26  Score=190.84  Aligned_cols=289  Identities=13%  Similarity=0.095  Sum_probs=215.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .++|.-||+.+.+|.+|.+|.++++|.. .||-..+|+.+-+..+  +.+-++++.+++..++..+       +|++++|
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-------AD~t~kL   78 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-------ADQTAKL   78 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-------ccceeEE
Confidence            5789999999999999999999998876 9999888988765544  5566777777777765543       5999999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC------CeEEEEECCC-------CeeeeeecCCCCCceEEEEeeC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR------EKTYIYDANT-------LAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d------~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      ||+++|+++.+++.+.+|..+.|+.++  .++++|      +.|.++|++.       .++...+.++..  .+...-+.
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s--kit~a~Wg  156 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS--KITSALWG  156 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--ceeeeeec
Confidence            999999999999999999999887644  444443      4799999983       344666666553  34444455


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      |-+..|+++.  ++|.|.+||++++...      |...|+.+.++||..+++|+|.|.+. ++||+.+-+.++++..   
T Consensus       157 ~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta-kl~D~~tl~v~Kty~t---  230 (327)
T KOG0643|consen  157 PLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA-KLVDVRTLEVLKTYTT---  230 (327)
T ss_pred             ccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc-eeeeccceeeEEEeee---
Confidence            6677888877  6999999999997543      45899999999999999999999884 9999999999998853   


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccc-eeecccccceeeeeccCCCccc
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKR  297 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~  297 (337)
                      ..+|++.+++|...   +++.|+....-   |+.+-...     ..+|-..+.-..+ .++-...+|+-..|.++++|++
T Consensus       231 e~PvN~aaisP~~d---~VilgGGqeA~---dVTTT~~r-----~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  231 ERPVNTAAISPLLD---HVILGGGQEAM---DVTTTSTR-----AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             cccccceecccccc---eEEecCCceee---eeeeeccc-----ccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            45799999999877   56655543222   22221111     1111111211111 1223334455567888999999


Q ss_pred             CEEEEEEeCCcEEEEEEecC
Q 019672          298 ASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       298 ~~l~~~~~dg~~~~~~~~~~  317 (337)
                      +...+|++||.|++.-++.+
T Consensus       300 ksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccccCCCCceEEEEEeccc
Confidence            99999999999999988754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.95  E-value=2e-25  Score=198.41  Aligned_cols=285  Identities=15%  Similarity=0.191  Sum_probs=182.1

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCC---EEEEEEccCCCEEEEEeCC-----------
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGA---FSIVEMLYSSSLLAIVGAG-----------   67 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g-----------   67 (337)
                      +.+|++.|+.++|+||++.|++.+.| ..+|||+.+.+++.++..+.   -..+.+.+..+.++.++.+           
T Consensus       231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence            34899999999999999998887765 57999999998776653321   1123334444444444431           


Q ss_pred             --------------------CC----CCCCCceEEEEECCCCCEEEE--EEcCCceeEEEEcC-CeEEEEE-CCeEEEEE
Q 019672           68 --------------------EQ----PSLSPRRLCLFNTTTGTALRE--LNFLTSILAVRLNK-KRLVIVL-REKTYIYD  119 (337)
Q Consensus        68 --------------------~~----~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~i~~~~-~~~~v~~-d~~i~i~d  119 (337)
                                          ..    .++.|+.|.-||..++..-..  -.|...|.+++.+. +.++.++ |+++++.+
T Consensus       311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~  390 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVIS  390 (603)
T ss_pred             ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEe
Confidence                                00    023445555555544433222  12233455554443 3333333 55555554


Q ss_pred             CCCCeeeee--ecCCCCCce-----------------------------------EEEEeeCCCccEEEEcCCCCccEEE
Q 019672          120 ANTLAILDT--IDTVPNLKG-----------------------------------LCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus       120 ~~~~~~~~~--~~~~~~~~~-----------------------------------~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                      +.....-..  ++...+|.+                                   ..+++.+|++..+|.+|  +||.|+
T Consensus       391 ~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG--~Dgkvh  468 (603)
T KOG0318|consen  391 LKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG--QDGKVH  468 (603)
T ss_pred             cccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec--ccceEE
Confidence            421100000  000001100                                   23456678888999988  699999


Q ss_pred             EEEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          163 VYNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       163 i~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      ||.+.....       .|.++|++++|||||.+||++...+.+ -+||+.+.+. +.-+-..|.+.|.||+|||+.+   
T Consensus       469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv-v~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~---  543 (603)
T KOG0318|consen  469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV-VLYDVASREV-KTNRWAFHTAKINCVAWSPNNK---  543 (603)
T ss_pred             EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE-EEEEcccCce-ecceeeeeeeeEEEEEeCCCce---
Confidence            999876442       245999999999999999999999886 5999999876 4334456788999999999999   


Q ss_pred             EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ++|+||-|-.|.||+++++.+...      ..+..+.....-.|               .+..+|++.+.|-.+++|++.
T Consensus       544 ~vATGSlDt~Viiysv~kP~~~i~------iknAH~~gVn~v~w---------------lde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  544 LVATGSLDTNVIIYSVKKPAKHII------IKNAHLGGVNSVAW---------------LDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeccccceEEEEEccChhhheE------eccccccCceeEEE---------------ecCceEEeccCcceeEEeccc
Confidence            999999999999999988765321      11111111111122               234789999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=3.1e-27  Score=204.10  Aligned_cols=235  Identities=13%  Similarity=0.166  Sum_probs=188.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCc--EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .++|+++|+++.|+++|.++++|..+|. ++|+..-..  .....+...+..+++.+..+..+.++       .|++|+|
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S-------dDg~iki  206 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS-------DDGTIKI  206 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec-------CCCeEEE
Confidence            4689999999999999999999999885 999864332  22222224455555554444444444       5999999


Q ss_pred             EECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ||....++...+..++ .|.++.|+|..-.+++   |+.|++||.+++..+.++..+.+  .++++.+++++.+|++++ 
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt~s-  283 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLTGS-  283 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEEcc-
Confidence            9999888877776665 8999999997655554   77999999999999988876655  688888999999999998 


Q ss_pred             CCccEEEEEEccCCccc-----ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                       .|..++++|+++.+.+     |+..|++++|+| ...+|++|+.||.+ ..|.+...+.+..+..+ |...|++|+|+|
T Consensus       284 -kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP  360 (464)
T KOG0284|consen  284 -KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPLGEIPPA-HDGEIWSLAYHP  360 (464)
T ss_pred             -CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce-EEEeccccccccCCCcc-cccceeeeeccc
Confidence             5999999999977654     558899999999 55689999999985 68999866666666544 466799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      -|.   +||+|+.|.++++|.-..
T Consensus       361 lGh---il~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  361 LGH---ILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cce---eEeecCCCcceeeeccCC
Confidence            999   999999999999997543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=3.6e-27  Score=207.63  Aligned_cols=278  Identities=13%  Similarity=0.121  Sum_probs=208.5

Q ss_pred             CCCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCC-CcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .++|...|+++.|.| .+.+|++|+.|+ ++|||+-. ++++.+..+|.-.+-++.|+....-+.+++     -|+.|++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s-----fD~~lKl  284 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS-----FDRFLKL  284 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee-----cceeeee
Confidence            568899999999999 788888888887 59999766 677777766655555555665554445543     6999999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ||+++|+++..+.....+.+++++|+.  +++++  |++|+.||+++++.++++..+-  ..+..+.+-+++..+++++ 
T Consensus       285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL--g~i~~i~F~~~g~rFissS-  361 (503)
T KOG0282|consen  285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL--GAILDITFVDEGRRFISSS-  361 (503)
T ss_pred             eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh--hheeeeEEccCCceEeeec-
Confidence            999999999999988899999998754  44443  8999999999999998886543  4577888888888988887 


Q ss_pred             CCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee---EeeccCCcceeEEEEE
Q 019672          156 TTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS---YSFRRGTYPSTIFSLS  226 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~l~  226 (337)
                       +|+.++||+....-...      .....||..+|++++++.=|.|.. |.++.+...-++   +.|+.+.-.+--..|.
T Consensus       362 -Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  362 -DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             -cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCceeeEE
Confidence             69999999987654332      277889999999999999999976 678887543222   2333221112245689


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  306 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d  306 (337)
                      |||||.   +|++|+.||.+.+||.++-+...+..       ..-...+.-.|.+..             ...+++++-|
T Consensus       440 fSpDG~---~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v~wHP~e-------------~Skvat~~w~  496 (503)
T KOG0282|consen  440 FSPDGR---TLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGVDWHPVE-------------PSKVATCGWD  496 (503)
T ss_pred             EcCCCC---eEEeecCCccEEEeechhhhhhhccc-------cCCcceEEEEecCCC-------------cceeEecccC
Confidence            999999   99999999999999988765543211       110111233566643             2678888999


Q ss_pred             CcEEEEE
Q 019672          307 GYFVEYI  313 (337)
Q Consensus       307 g~~~~~~  313 (337)
                      |.|++|.
T Consensus       497 G~Ikiwd  503 (503)
T KOG0282|consen  497 GLIKIWD  503 (503)
T ss_pred             ceeEecC
Confidence            9999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=1.8e-27  Score=202.03  Aligned_cols=273  Identities=14%  Similarity=0.183  Sum_probs=198.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      ....|+|+++..  ..+++|..| .++|||..+...++...+|.-.++++.|+...  +++|     ++|.+|++||+++
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rv--iisG-----SSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERV--IVSG-----SSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceE--EEec-----CCCceEEEEeccC
Confidence            456799999754  457788765 57999998887766666655566677777663  3444     3799999999999


Q ss_pred             CCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeee---eeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           85 GTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        85 ~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      |+++.++-++ ..|..+.|+.+.++.++ |.++.+||+.....+   +.+..|-  ..+..+.++  ..++++++  .|.
T Consensus       267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr--AaVNvVdfd--~kyIVsAS--gDR  340 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR--AAVNVVDFD--DKYIVSAS--GDR  340 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhh--hheeeeccc--cceEEEec--CCc
Confidence            9999887655 58999999999988888 889999999765322   2233332  234444443  34888887  499


Q ss_pred             EEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          160 SVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       160 ~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                      +|++|++.+...+     |+..|.|+.+  .|+++++||+|.+ ||+||+..|.++..+. | |..-|.|+.|.  .+  
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLe-G-HEeLvRciRFd--~k--  411 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLE-G-HEELVRCIRFD--NK--  411 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHh-c-hHHhhhheeec--Cc--
Confidence            9999999998765     3467888776  6789999999987 7999999999988774 4 35569999996  44  


Q ss_pred             cEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          235 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                       .+++|+.||+|+|||+..+..++.+.. .-++. .+......++...+            +.-+|++.+.|.++.+|++
T Consensus       412 -rIVSGaYDGkikvWdl~aaldpra~~~-~~Cl~-~lv~hsgRVFrLQF------------D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  412 -RIVSGAYDGKIKVWDLQAALDPRAPAS-TLCLR-TLVEHSGRVFRLQF------------DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             -eeeeccccceEEEEecccccCCccccc-chHHH-hhhhccceeEEEee------------cceEEEeccCCCeEEEEEc
Confidence             799999999999999998877653110 01110 11111112222211            3368999999999999999


Q ss_pred             ecC
Q 019672          315 SIN  317 (337)
Q Consensus       315 ~~~  317 (337)
                      ...
T Consensus       477 l~~  479 (499)
T KOG0281|consen  477 LNG  479 (499)
T ss_pred             CCC
Confidence            654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=194.42  Aligned_cols=233  Identities=16%  Similarity=0.180  Sum_probs=192.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEE--EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+|.+.|..++|+..|++|++++.|- +++||.++. +.+.  ..+.+.+..+.+.+.++.++.++       .|++|+.
T Consensus       147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s-------rD~tik~  219 (406)
T KOG0295|consen  147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCS-------RDNTIKA  219 (406)
T ss_pred             hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecc-------cccceeE
Confidence            46788899999999999999999887 799998874 3222  23446777788888887776554       5999999


Q ss_pred             EECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-----------
Q 019672           80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-----------  144 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------  144 (337)
                      |++.+|-++.++..+. =|.-+..+.++.++++   |.++++|-+.+++....++.+.++....++++.           
T Consensus       220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            9999999999987766 4788899999988887   779999999999777777777777666666541           


Q ss_pred             -C-CccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          145 -L-NACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       145 -~-~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                       . .++++++++  .|++|++||+.++..+.     .+.|..++|+|.|+||+++.+|++ +|+||++++++++++.  .
T Consensus       300 ~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~--a  374 (406)
T KOG0295|consen  300 STNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLE--A  374 (406)
T ss_pred             CCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccC--C
Confidence             1 124666655  69999999999998764     488999999999999999999998 6999999999999886  3


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      ++.-++++.|..+..   ++++|+-|.++++|.-
T Consensus       375 h~hfvt~lDfh~~~p---~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CcceeEEEecCCCCc---eEEeccccceeeeeec
Confidence            466799999999988   9999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.6e-25  Score=196.72  Aligned_cols=232  Identities=15%  Similarity=0.211  Sum_probs=185.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .-|++||.+++|+.+|++|++++.++. .+||..++........+...-+++.+.++.-...++      .|+.|+++.+
T Consensus       273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~------td~~i~V~kv  346 (524)
T KOG0273|consen  273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSS------TDGCIHVCKV  346 (524)
T ss_pred             hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecC------CCceEEEEEe
Confidence            468999999999999999999998875 999998887665555444443334444433333333      5899999999


Q ss_pred             CCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC---------ccE
Q 019672           83 TTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN---------ACF  149 (337)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  149 (337)
                      ...+++.++.++ .+|.++.|++...++++   |++++||........+.++.|..  .++.+.++|.         +..
T Consensus       347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~  424 (524)
T KOG0273|consen  347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLM  424 (524)
T ss_pred             cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--ceeeEeecCCCCccCCCcCCce
Confidence            988999887654 58999999987766655   78999999988877777766543  4555555443         346


Q ss_pred             EEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++++  .|++|++||+..+.+.|     +.||.+++|+|+|+++|+|+.||. +.||++++++..+.+..   ...|..
T Consensus       425 l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~~~l~~s~~~---~~~Ife  498 (524)
T KOG0273|consen  425 LASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKTGKLVKSYQG---TGGIFE  498 (524)
T ss_pred             EEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe-eEeccccchheeEeecC---CCeEEE
Confidence            77777  49999999999988764     499999999999999999999997 68999999999888753   345999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |+|+.+|.   +|.++-.||.+.+-|+.
T Consensus       499 l~Wn~~G~---kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  499 LCWNAAGD---KLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEcCCCC---EEEEEecCCCceEEEec
Confidence            99999998   99999999999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.2e-25  Score=182.68  Aligned_cols=235  Identities=15%  Similarity=0.172  Sum_probs=177.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eC--CEEEEEEcc-CCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VG--AFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~--~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      +++..+|-+++|+.+|+.|+.|+.++ +.||+++..+++....  .+  .+..+++.+ +++.++.+++       |++|
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-------dk~i   89 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-------DKTI   89 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-------CceE
Confidence            46778999999999999999998877 5999999886554432  12  233334433 4466666665       8999


Q ss_pred             EEEECCCCCEEEEEEcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           78 CLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      ++||.++++++..+.....-..+.++|++-.++  . |+.|.+.|.++.+.....+..... .-+++. +++..++++.|
T Consensus        90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~-ne~~w~-~~nd~Fflt~G  167 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV-NEISWN-NSNDLFFLTNG  167 (313)
T ss_pred             EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee-eeeeec-CCCCEEEEecC
Confidence            999999999999988776555677877654433  3 789999999988777665433221 223444 34444555655


Q ss_pred             CCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          155 STTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                         .|.|.|......+.+     |.....||.|+|+|++||+||.|.. +-+||+...-++..+.+.  .-+|..|+||.
T Consensus       168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRl--dwpVRTlSFS~  241 (313)
T KOG1407|consen  168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRL--DWPVRTLSFSH  241 (313)
T ss_pred             ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccc--cCceEEEEecc
Confidence               699999988777655     3367788999999999999999985 689999988777777653  45799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ||+   +||+||.|-.|-|=+++++..
T Consensus       242 dg~---~lASaSEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  242 DGR---MLASASEDHFIDIAEVETGDR  265 (313)
T ss_pred             Ccc---eeeccCccceEEeEecccCCe
Confidence            999   999999999998888877654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-25  Score=202.72  Aligned_cols=270  Identities=14%  Similarity=0.161  Sum_probs=206.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCE--EEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+...|-++.|+|....++++--+| +.|||.++..++...+..++  ....+....+.++..+       .|..||++
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVf   82 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGS-------DDMQIRVF   82 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEec-------CCceEEEE
Confidence            34778899999999999988888776 79999999888776665444  3444555666665443       59999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--C-CeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCC-ccEEEEcC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKRLVIVL--R-EKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLN-ACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~  154 (337)
                      +..+++.+..++.+. -|++|+.+|....+.+  | -.|++||-..+ .+.++++.|.+  .++.++++|. ...+|+++
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H--yVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH--YVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce--EEEEEEecCCCccceeeee
Confidence            999999999987655 7999999998766554  4 48999999876 44566776655  6666666663 45667666


Q ss_pred             CCCccEEEEEEccCCccc-----ccCceEEEEeCCCC--CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg--~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                        -|++|+||.+.+....     |+..|+|+.|-+-|  .+|+||++|.+ |+|||.++.++++++..  |...|..+.|
T Consensus       161 --LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f  235 (794)
T KOG0276|consen  161 --LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF  235 (794)
T ss_pred             --ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence              5999999999876543     55899999997744  69999999986 79999999999999853  3456999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      +|.=.   ++++||.|||++||.-.+-+...           .+.-....+|..+.          +..++.+++|..+|
T Consensus       236 hp~lp---iiisgsEDGTvriWhs~Ty~lE~-----------tLn~gleRvW~I~~----------~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  236 HPELP---IIISGSEDGTVRIWNSKTYKLEK-----------TLNYGLERVWCIAA----------HKGDGKIAVGFDEG  291 (794)
T ss_pred             cCCCc---EEEEecCCccEEEecCcceehhh-----------hhhcCCceEEEEee----------cCCCCeEEEeccCC
Confidence            99998   99999999999999976654322           22223345777653          34456778888888


Q ss_pred             cEEE
Q 019672          308 YFVE  311 (337)
Q Consensus       308 ~~~~  311 (337)
                      .+.+
T Consensus       292 ~i~v  295 (794)
T KOG0276|consen  292 SVTV  295 (794)
T ss_pred             cEEE
Confidence            7654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=212.70  Aligned_cols=235  Identities=14%  Similarity=0.164  Sum_probs=180.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCc------------------------------EE------------
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR------------------------------LC------------   41 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~------------------------------~~------------   41 (337)
                      +|++.|+++.|++||+|||+|++|++ +||.+..-+                              .+            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            78999999999999999999999996 999764400                              00            


Q ss_pred             ------------------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc
Q 019672           42 ------------------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN  103 (337)
Q Consensus        42 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~  103 (337)
                                        ....+|...++++.|+.+.++|.+.      .|++||||++...++++.+.|+.-|++|+|+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                              0001122346677788777777665      7999999999999999999999999999998


Q ss_pred             C--CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----
Q 019672          104 K--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----  174 (337)
Q Consensus       104 ~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----  174 (337)
                      |  +..++.+  |++++||++...+.+.-.+.+   .-+.+++..|+|++.+.+..  +|.+++|+....+....     
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt~--~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGTF--NGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEEe--ccEEEEEEccCCeEEEeeeEee
Confidence            7  3344433  999999999988777665543   34677788888888887774  89999999876654311     


Q ss_pred             --------CceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          175 --------APLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       175 --------~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                              ..|+.+.|.|... .+...++|.. |||+|.++.+++..|+.......-....|+.||+   +|+++++|..
T Consensus       494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk---~IVs~seDs~  569 (712)
T KOG0283|consen  494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK---HIVSASEDSW  569 (712)
T ss_pred             ccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCC---EEEEeecCce
Confidence                    4699999987433 4666678877 7999999888888886333223345679999999   9999999999


Q ss_pred             EEEEecCCC
Q 019672          246 LHVFSPGFA  254 (337)
Q Consensus       246 v~iw~l~~~  254 (337)
                      |+||+++..
T Consensus       570 VYiW~~~~~  578 (712)
T KOG0283|consen  570 VYIWKNDSF  578 (712)
T ss_pred             EEEEeCCCC
Confidence            999998543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=8.8e-26  Score=209.46  Aligned_cols=236  Identities=11%  Similarity=0.109  Sum_probs=180.6

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--------------------------------EEEEEEcC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--------------------------------ALRELNFL   94 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--------------------------------~~~~~~~~   94 (337)
                      .++.++++..++..+|.  |     +.|..|++|.+...+                                ...-+.|.
T Consensus       379 ~~v~ca~fSddssmlA~--G-----f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLAC--G-----FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             CcceeEeecCCcchhhc--c-----ccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            45666677666664433  3     568999999877311                                01123456


Q ss_pred             CceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672           95 TSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (337)
Q Consensus        95 ~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~  171 (337)
                      ++|....|+|+.-++.  + |.++++|.+.+...+..+.+|..|  +..+.++|.+.++|+++  .|++.++|.......
T Consensus       452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P--VwdV~F~P~GyYFatas--~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP--VWDVQFAPRGYYFATAS--HDQTARLWSTDHNKP  527 (707)
T ss_pred             CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc--eeeEEecCCceEEEecC--CCceeeeeecccCCc
Confidence            7999999998754443  3 789999999999888888876665  44555668899999997  599999998876554


Q ss_pred             c-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          172 H-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       172 ~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      .     |.+.|.|+.|+|+..++||||.|.+ +|+||+.+|..+..|. | |.++|.+|+|||+|+   +||+|+.||.|
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~-G-H~~~V~al~~Sp~Gr---~LaSg~ed~~I  601 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFT-G-HKGPVTALAFSPCGR---YLASGDEDGLI  601 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEec-C-CCCceEEEEEcCCCc---eEeecccCCcE
Confidence            3     4489999999999999999999988 6999999999998885 4 578899999999999   99999999999


Q ss_pred             EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      +|||+..+.....          +..+           ...+..+.++.+++-|++++.|.+|+.|++....+.
T Consensus       602 ~iWDl~~~~~v~~----------l~~H-----------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  602 KIWDLANGSLVKQ----------LKGH-----------TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             EEEEcCCCcchhh----------hhcc-----------cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            9999988765332          1111           111233445677899999999999999998655443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5e-25  Score=199.47  Aligned_cols=235  Identities=12%  Similarity=0.102  Sum_probs=185.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEE--EccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      -.+.||+++.|=+..+++++|++|. ++|||..+++.+...+.|+-.+-+  ..+...+++..+       .|-+|++||
T Consensus        53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~  125 (794)
T KOG0276|consen   53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWD  125 (794)
T ss_pred             ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEee
Confidence            4567999999999999999999998 599999999998887766655444  433334444333       599999999


Q ss_pred             CCCCC-EEEEEEcCC-ceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGT-ALRELNFLT-SILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~-~~~~~~~~~-~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      .+.+- +..+++.++ -|.+++|+|+   .++.+. |++|+||.+....+..+++.|......+.+-+-+|.++|++++ 
T Consensus       126 we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-  204 (794)
T KOG0276|consen  126 WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-  204 (794)
T ss_pred             ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-
Confidence            98763 444555444 7999999874   344444 9999999999988888888766544445556677888999987 


Q ss_pred             CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                       .|.+|+|||.++..++     |+..|+++.|+|.-..++|||+||+ +|||+..+-++..++..+.  ..|+|++-.+.
T Consensus       205 -DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT-vriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~  280 (794)
T KOG0276|consen  205 -DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT-VRIWNSKTYKLEKTLNYGL--ERVWCIAAHKG  280 (794)
T ss_pred             -CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc-EEEecCcceehhhhhhcCC--ceEEEEeecCC
Confidence             6999999999998876     4488999999999999999999999 5999999988877776543  46999999988


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCc
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +.   .++.|.+.|.|.| .+..+.
T Consensus       281 ~~---~i~vG~Deg~i~v-~lgree  301 (794)
T KOG0276|consen  281 DG---KIAVGFDEGSVTV-KLGREE  301 (794)
T ss_pred             CC---eEEEeccCCcEEE-EccCCC
Confidence            88   8999999887744 454433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.8e-26  Score=199.70  Aligned_cols=233  Identities=13%  Similarity=0.163  Sum_probs=190.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .++.++|+++.|.+++.++++++.++ +++||++..+++.+..+|.-.+++..+.-.....+++     +.|++|++||+
T Consensus       216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg-----s~DRtiK~WDl  290 (459)
T KOG0288|consen  216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG-----SADRTIKLWDL  290 (459)
T ss_pred             hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeec-----cccchhhhhhh
Confidence            45678899999999999977777766 6999999999888877766666665555444445666     37999999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      ....+..++-..+.+.+|..+...++... |++|++||++.......+..+.   .+.++..+.++..+.+++  .|.++
T Consensus       291 ~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsss--RDdtl  365 (459)
T KOG0288|consen  291 QKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSS--RDDTL  365 (459)
T ss_pred             hhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeec--CCCce
Confidence            99999998888888888887733222222 8899999999998888876543   577778778888888877  48899


Q ss_pred             EEEEccCCccccc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          162 LVYNVMELHSHCE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       162 ~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .++|+++....+.         ...+.+.|||++.|+|+||.||. ++||++.++++.+.+......+.|++++|+|.|.
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS  444 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence            9999998776543         66899999999999999999998 5899999999988887655455799999999999


Q ss_pred             cccEEEEEeCCCcEEEEe
Q 019672          233 FQDILVATSSSGSLHVFS  250 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~  250 (337)
                         .|++++.++.+.+|.
T Consensus       445 ---~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  445 ---GLLSADKQKAVTLWT  459 (459)
T ss_pred             ---hhhcccCCcceEecC
Confidence               999999999999993

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.5e-25  Score=203.88  Aligned_cols=276  Identities=13%  Similarity=0.133  Sum_probs=202.7

Q ss_pred             CCCCeEEEEE-cCCCCEEEEEcCCc-eEEEeCCCCcE-EEEEeeCCEEEEEEc-cCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSF-NQDNSGFALSTKDG-FKIFDSSTGRL-CYERAVGAFSIVEML-YSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~f-s~dg~~la~g~~~g-~~vw~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      -.++|+.+.| .|+.++||++++.+ +|+|++.+... ++..  |.-.+..+. ++++. .++++     +.|+++++|-
T Consensus       322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G--H~e~vlSL~~~~~g~-llat~-----sKD~svilWr  393 (775)
T KOG0319|consen  322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG--HTEAVLSLDVWSSGD-LLATG-----SKDKSVILWR  393 (775)
T ss_pred             CchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC--chhheeeeeecccCc-EEEEe-----cCCceEEEEE
Confidence            4567888887 58889999999876 79998876533 3333  333344433 44442 23333     2699999997


Q ss_pred             CCCCC----EEEEE-EcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeee---eee----cCCCCCceEEEEeeCC
Q 019672           82 TTTGT----ALREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAIL---DTI----DTVPNLKGLCAFSPSL  145 (337)
Q Consensus        82 ~~~~~----~~~~~-~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~---~~~----~~~~~~~~~~~~~~~~  145 (337)
                      +..+.    ++... .|...|.+++++..   .++.++ |.++++|+++..+..   ..+    ....+...+.+++.+|
T Consensus       394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~  473 (775)
T KOG0319|consen  394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP  473 (775)
T ss_pred             ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence            74433    22233 34557888888643   334343 889999999762111   111    1223445667777778


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      +..++|+++  .|.+.+||++......     |+..|.|+.|+|..+.+||+|.|++ ||||.+.+..++++|. | |.+
T Consensus       474 ndkLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~e-G-H~~  548 (775)
T KOG0319|consen  474 NDKLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFE-G-HTS  548 (775)
T ss_pred             CCceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeec-C-ccc
Confidence            888999998  6999999999976654     5588999999999999999999998 6999999999999995 4 467


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      .|..+.|-.+|+   .|++++.||-|+||++++..-..           .+..+...+|....          ++..+.+
T Consensus       549 aVlra~F~~~~~---qliS~~adGliKlWnikt~eC~~-----------tlD~H~DrvWaL~~----------~~~~~~~  604 (775)
T KOG0319|consen  549 AVLRASFIRNGK---QLISAGADGLIKLWNIKTNECEM-----------TLDAHNDRVWALSV----------SPLLDMF  604 (775)
T ss_pred             eeEeeeeeeCCc---EEEeccCCCcEEEEeccchhhhh-----------hhhhccceeEEEee----------cCcccee
Confidence            899999999999   99999999999999998876533           34455567888765          5566789


Q ss_pred             EEEEeCCcEEEEEEecCC
Q 019672          301 SVITYNGYFVEYIFSINN  318 (337)
Q Consensus       301 ~~~~~dg~~~~~~~~~~~  318 (337)
                      ++|+.||.+..|.=.++.
T Consensus       605 ~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  605 VTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             EecCCCeEEEEeecCcHH
Confidence            999999999999765553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=5.3e-24  Score=185.86  Aligned_cols=229  Identities=17%  Similarity=0.250  Sum_probs=178.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+..++..+.|+|+++++++++.++ +++|++.+++.+.....+.  +..+.+..+...++ +++      .++.|++||
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~  121 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWD  121 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEE
Confidence            5667889999999999999888766 6999999876655554333  44444444433333 332      489999999


Q ss_pred             CCCCCEEEEEE-cCCceeEEEEcCC-eEE-EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRELN-FLTSILAVRLNKK-RLV-IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~-~~~-v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      +.+++.+..+. +...+.++.++++ .++ ++. ++.+++||+++++.+..+..+.  ..+.++.+++++..+++++  .
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--~  197 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSS--S  197 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc--cccceEEECCCcCEEEEec--C
Confidence            99888887776 4457999999884 333 334 8899999999888777776443  3466777778887888877  4


Q ss_pred             ccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          158 KGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +|.|.+||+.+.+...     ..++.+++|+|++.++++++.||. |++||+.+++.+..+.  .+...|.+++|+|+++
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~  274 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGK  274 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEcc--ccCCcEEEEEECCCCC
Confidence            8999999998765432     368999999999999999888998 6999999988888775  3356799999999998


Q ss_pred             cccEEEEEeCCCcEEEEe
Q 019672          233 FQDILVATSSSGSLHVFS  250 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~  250 (337)
                         +|++++.||.|++|+
T Consensus       275 ---~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 ---RLASGSADGTIRIWD  289 (289)
T ss_pred             ---EEEEecCCCeEEecC
Confidence               999999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=1.1e-24  Score=181.78  Aligned_cols=234  Identities=15%  Similarity=0.139  Sum_probs=184.6

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEc-CCceEEEeCCCCcEEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEE
Q 019672            2 SNQSSSYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         2 ~~~~~~~~v~~~~fs~dg~~la~g~-~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ....|++.|..+.|++|++.+++++ ++.++.||.++|+.++....+.-.+-.+.+.. +...+.++     +.|++++|
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg-----sdD~t~kl  159 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG-----SDDGTLKL  159 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec-----CCCceEEE
Confidence            3567899999999999999977555 55689999999999888765443333333332 33334444     47999999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ||.++...+.+++-..+++++.|..  +....++ |+.|++||++....++.+..+.+  .+..++.++++.++.+.+  
T Consensus       160 ~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsns--  235 (338)
T KOG0265|consen  160 WDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNS--  235 (338)
T ss_pred             EeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCcccccc--
Confidence            9999999999887777899999954  4555555 99999999999988988887665  466777778888988877  


Q ss_pred             CccEEEEEEccCCccccc-------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          157 TKGSVLVYNVMELHSHCE-------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~-------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      -|.++++||++-....+.             .....++|+|+++.+..|+.|.. +.+||......++.+. | |...|.
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~-vyvwd~~~r~~lyklp-G-h~gsvn  312 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF-VYVWDTTSRRILYKLP-G-HYGSVN  312 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccce-EEEeecccccEEEEcC-C-cceeEE
Confidence            599999999875432211             45678899999999999999986 5799999888888874 3 456799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ++.|+|...   +|.+++.|.+|.+=.
T Consensus       313 ~~~Fhp~e~---iils~~sdk~i~lge  336 (338)
T KOG0265|consen  313 EVDFHPTEP---IILSCSSDKTIYLGE  336 (338)
T ss_pred             EeeecCCCc---EEEEeccCceeEeec
Confidence            999999999   999999999998744

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=4.9e-25  Score=195.61  Aligned_cols=287  Identities=13%  Similarity=0.104  Sum_probs=193.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      +.+..-|+.+++.|.|-.|++|+-|. +++||+....       .+.-.+.|.+..+.+...++.++.++|       .-
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-------~a  236 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-------SA  236 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-------Cc
Confidence            34566799999999999999998765 7999987652       223334567777788777888888877       45


Q ss_pred             eEEEEECCCCCEEEEEE-------------cCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCee-eeeecCCCC---
Q 019672           76 RLCLFNTTTGTALRELN-------------FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAI-LDTIDTVPN---  134 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~-------------~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~---  134 (337)
                      ..+|+|-...+......             |-..+++..|+|.   .++.++ |++++|||+.+.+. +..|.+...   
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            78888865433332222             1225566677763   344454 99999999976543 333432211   


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------ccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------HCE--APLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                      ...+..-++++++.++|.+-  .||.|++||..+...        .|.  ..|+||+||+||++|++-+.|++ +|+||+
T Consensus       317 Rv~~tsC~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDL  393 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDL  393 (641)
T ss_pred             ccCceeeecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeec
Confidence            11223334567777877654  599999999865432        233  48999999999999999999998 599999


Q ss_pred             CCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC------CcEEEEecCCCcccCCCCccccccccccc-ccce
Q 019672          205 SEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS------GSLHVFSPGFAINQRRGGRTSSILGSILP-ESVN  276 (337)
Q Consensus       205 ~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d------g~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~~~  276 (337)
                      +..+. +.....-...-+-+.++||||.+   +|++|..-      |++.+||-.+.....+.        .+.. +.+.
T Consensus       394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki--------~i~~aSvv~  462 (641)
T KOG0772|consen  394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDTVYKI--------DISTASVVR  462 (641)
T ss_pred             cccccchhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceeeEEEe--------cCCCceEEE
Confidence            87653 33322111222456789999999   88888653      67888886554332210        0111 1223


Q ss_pred             eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEE
Q 019672          277 EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTL  326 (337)
Q Consensus       277 ~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~  326 (337)
                      +.|              +++.|+|++++.||.+++| +++++++++.+..
T Consensus       463 ~~W--------------hpkLNQi~~gsgdG~~~vy-Ydp~~S~RGak~c  497 (641)
T KOG0772|consen  463 CLW--------------HPKLNQIFAGSGDGTAHVY-YDPNESIRGAKLC  497 (641)
T ss_pred             Eee--------------cchhhheeeecCCCceEEE-ECccccccchhhe
Confidence            445              4556999999999999999 8999888876554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=199.04  Aligned_cols=281  Identities=13%  Similarity=0.164  Sum_probs=197.9

Q ss_pred             eEEEEE-cCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCC---CEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSF-NQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSS---SLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~f-s~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      +..+.- ...++.|++..+..+.+||.++.++....-+.+-.+.+|.|-+   +.+++++.       ...+|+++..+.
T Consensus       284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~  356 (775)
T KOG0319|consen  284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTS  356 (775)
T ss_pred             hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCCC
Confidence            444443 4455667777777889999988877655544444455555544   77887775       578999999887


Q ss_pred             CEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCe----eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           86 TALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA----ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      .+..-..|...|.++....++  ++.++ |+++++|.+++..    .+.....|.+..+.++++.. ...++++++  .|
T Consensus       357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS--~D  433 (775)
T KOG0319|consen  357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVS--QD  433 (775)
T ss_pred             ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEec--CC
Confidence            776444455578888843443  33444 8999999884432    23334555555555555432 234667766  59


Q ss_pred             cEEEEEEccCCc--------------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          159 GSVLVYNVMELH--------------SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       159 g~v~i~d~~~~~--------------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++++|++...+              ..|...|+|++++|+.++|||||.|.+ .+||+++.++.+.++. || ...|.|
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKiW~le~~~l~~vLs-GH-~RGvw~  510 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKIWDLEQLRLLGVLS-GH-TRGVWC  510 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eeeecccCceEEEEee-CC-ccceEE
Confidence            999999997622              124588999999999999999999998 5999999999988885 43 456999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      |.|+|..+   .||++|.|.||+||.+++..-.++          +.           ++...+.-+.|--.+++|++++
T Consensus       511 V~Fs~~dq---~laT~SgD~TvKIW~is~fSClkT----------~e-----------GH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  511 VSFSKNDQ---LLATCSGDKTVKIWSISTFSCLKT----------FE-----------GHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             EEeccccc---eeEeccCCceEEEEEeccceeeee----------ec-----------CccceeEeeeeeeCCcEEEecc
Confidence            99999999   999999999999999987654321          11           1111111111122348999999


Q ss_pred             eCCcEEEEEEecCCCC-------eeceEEe
Q 019672          305 YNGYFVEYIFSINNCC-------ESTWTLD  327 (337)
Q Consensus       305 ~dg~~~~~~~~~~~~~-------~~~~~~~  327 (337)
                      +||.+++|++++.+|.       ++.|.+.
T Consensus       567 adGliKlWnikt~eC~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNECEMTLDAHNDRVWALS  596 (775)
T ss_pred             CCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence            9999999999999886       4566653

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.3e-23  Score=170.10  Aligned_cols=276  Identities=11%  Similarity=0.127  Sum_probs=190.6

Q ss_pred             CCCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCCC---cEEEE---EeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTG---RLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      .+++++.|..++|+|- |..||+|+.+. +++|++..+   .....   .+...+..+++.+.+++++..+       -|
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------FD   82 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------FD   82 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------cc
Confidence            4678889999999999 89899887765 799998743   22222   2345667777777777766554       59


Q ss_pred             ceEEEEECCCC--CEEEEEEcCC-ceeEEEEcCCeEEEE--E-CCeEEEEECCCC---eeeeeecCCCCCceEEEEeeCC
Q 019672           75 RRLCLFNTTTG--TALRELNFLT-SILAVRLNKKRLVIV--L-REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        75 ~~v~iwd~~~~--~~~~~~~~~~-~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      .++.||.-..+  +++..++.+. +|.+++|++++.+++  + |.+|-||.+..+   +....++.|.+....+  .++|
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V--~WHP  160 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHV--IWHP  160 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEE--EEcC
Confidence            99999986644  4566676554 899999987655554  4 889999998744   3444555555444444  4556


Q ss_pred             CccEEEEcCCCCccEEEEEEccC-Cc--c-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          146 NACFLAVPASTTKGSVLVYNVME-LH--S-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~-~~--~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      ...+|+++++  |.+|++|+-.. ..  .     .|...|.+++|+|.|.+|+++++|++ ++||-..+.     + .+.
T Consensus       161 t~dlL~S~SY--DnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~-----~-~~~  231 (312)
T KOG0645|consen  161 TEDLLFSCSY--DNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTD-----L-SGM  231 (312)
T ss_pred             CcceeEEecc--CCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccC-----c-chh
Confidence            5669999996  89999997652 21  1     13479999999999999999999998 699986632     2 223


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc-c
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV-K  296 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~  296 (337)
                      +..+++.++|. +|    .||+++.|+.|+||.-......+    ....+......          |-.-+|.+...| .
T Consensus       232 ~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d~p----~~~l~~~~~~a----------He~dVNsV~w~p~~  292 (312)
T KOG0645|consen  232 HSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPDEP----SWNLLAKKEGA----------HEVDVNSVQWNPKV  292 (312)
T ss_pred             cccceEeeeec-cc----ceEeccCCCEEEEEEecCCCCCc----hHHHHHhhhcc----------cccccceEEEcCCC
Confidence            45679999998 66    69999999999999866322111    11111100000          001122233333 2


Q ss_pred             cCEEEEEEeCCcEEEEEEe
Q 019672          297 RASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       297 ~~~l~~~~~dg~~~~~~~~  315 (337)
                      .++|++++.||.+++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            4899999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.9e-24  Score=199.67  Aligned_cols=239  Identities=14%  Similarity=0.173  Sum_probs=183.9

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +..|++||+.+.|+|++.+|++|++|. ++||+..+.+++++.-+|--.+-.+.|+..+=.+++.     +.|.+|+|||
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA-----SDDQTIrIWN  121 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA-----SDDQTIRIWN  121 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc-----cCCCeEEEEe
Confidence            347899999999999999999999986 6999999999998876655444445555544333444     2599999999


Q ss_pred             CCCCCEEEEEEcC-CceeEEEEcC-CeEEEE-E-CCeEEEEECCCCeeee---------------------------eec
Q 019672           82 TTTGTALRELNFL-TSILAVRLNK-KRLVIV-L-REKTYIYDANTLAILD---------------------------TID  130 (337)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~-~~~~v~-~-d~~i~i~d~~~~~~~~---------------------------~~~  130 (337)
                      +.+++++..++.+ +.|.+..|+| ..+++. + |.+|+|||+...+.-+                           ..-
T Consensus       122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            9999999998765 4799999998 344443 3 9999999996321110                           001


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      ...+..++...+++|...++++++  .|..|++|.+...+.       .|.++|.++-|+|...+|++.|+|++ |||||
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irVwD  278 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRVWD  278 (1202)
T ss_pred             ecccccccceEEecCCcceEEecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEEEe
Confidence            113445677778888888888877  699999999875542       35699999999999999999999998 79999


Q ss_pred             cCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          204 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +...+.+++|++.+  ..-+.++-+|..+   ++|+ +.|+-+-||.++.+.
T Consensus       279 m~kRt~v~tfrren--dRFW~laahP~lN---LfAA-gHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  279 MTKRTSVQTFRREN--DRFWILAAHPELN---LFAA-GHDSGMIVFKLERER  324 (1202)
T ss_pred             cccccceeeeeccC--CeEEEEEecCCcc---eeee-ecCCceEEEEEcccC
Confidence            99999999998754  4588899999998   5555 555557789887543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=4.6e-24  Score=182.27  Aligned_cols=281  Identities=12%  Similarity=0.089  Sum_probs=209.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +..|+.+|.+++.+|+.+++++|+.|.. .||++.+++..+....|.-.++++.|+.+...+++|+     .++.|+||+
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-----msG~v~v~~  134 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-----MSGKVLVFK  134 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-----CCccEEEEE
Confidence            5678999999999999999999998877 9999999998888766655555555555444445554     589999999


Q ss_pred             CCCCCEEEEEEcC-CceeEEEEcCCeEEE-EE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRELNFL-TSILAVRLNKKRLVI-VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~v-~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      ..++.....+... ..+.=+.|+|...++ ++  |+.+-+|.+.+....+.+..+..  ...+=.+.|++..++++.  .
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~--~ct~G~f~pdGKr~~tgy--~  210 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS--PCTCGEFIPDGKRILTGY--D  210 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC--CcccccccCCCceEEEEe--c
Confidence            9999988887633 356678888865444 33  89999999998777777766443  334445567788888876  5


Q ss_pred             ccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-C-----Cccee---E
Q 019672          158 KGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-G-----TYPST---I  222 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-~-----~~~~~---i  222 (337)
                      ||+|++||+.+++..|+      .+..++.++.++..+.+|+.++. +++-+..+|+.+..+.. .     .+...   |
T Consensus       211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~-~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esv  289 (399)
T KOG0296|consen  211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV-ACGVNNGSGKVVNCNNGTVPELKPSQEELDESV  289 (399)
T ss_pred             CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc-EEEEccccceEEEecCCCCccccccchhhhhhh
Confidence            99999999999988776      46899999999999999999997 57888889988776641 0     11222   4


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  302 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~  302 (337)
                      -++.||..=+   +.|+|+-||+|-|||+.+.+.+...+...        ......|-. .              .+|++
T Consensus       290 e~~~~ss~lp---L~A~G~vdG~i~iyD~a~~~~R~~c~he~--------~V~~l~w~~-t--------------~~l~t  343 (399)
T KOG0296|consen  290 ESIPSSSKLP---LAACGSVDGTIAIYDLAASTLRHICEHED--------GVTKLKWLN-T--------------DYLLT  343 (399)
T ss_pred             hhcccccccc---hhhcccccceEEEEecccchhheeccCCC--------ceEEEEEcC-c--------------chhee
Confidence            4455555555   89999999999999998765433211111        122345544 2              68999


Q ss_pred             EEeCCcEEEEEEecCCC
Q 019672          303 ITYNGYFVEYIFSINNC  319 (337)
Q Consensus       303 ~~~dg~~~~~~~~~~~~  319 (337)
                      +|.||.++.|+..+-..
T Consensus       344 ~c~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  344 ACANGKVRQWDARTGQL  360 (399)
T ss_pred             eccCceEEeeeccccce
Confidence            99999999998765443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4e-25  Score=191.42  Aligned_cols=235  Identities=14%  Similarity=0.226  Sum_probs=173.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+|..+|..+.||||.++|++++.+. +++||+.+|.+.+.... .+.....+.+.++...++.|+     .|+++..||
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs-----~dr~i~~wd  340 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS-----PDRTIIMWD  340 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC-----CCCcEEEec
Confidence            47889999999999999987776655 69999999987665432 234444444555555566663     799999999


Q ss_pred             CCCCCEEEEEEcC--CceeEEEEcCCeEE--EE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           82 TTTGTALRELNFL--TSILAVRLNKKRLV--IV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        82 ~~~~~~~~~~~~~--~~v~~i~~~~~~~~--v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      +..+ .+...+.-  ..|.++++++++-.  +. .|..|++|+..+......+..+   ..+..++.+.++.+..+.-  
T Consensus       341 lDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL--  414 (519)
T KOG0293|consen  341 LDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNL--  414 (519)
T ss_pred             CCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEc--
Confidence            8754 34433322  36888888766533  33 3899999998765444444332   3577778888888877765  


Q ss_pred             CccEEEEEEccCCccccc-------CceEEEEeC-CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          157 TKGSVLVYNVMELHSHCE-------APLAAIVLS-SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~-------~~i~~~~~s-~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .+.++++||++..+.+.+       ..|-.-+|. .+..++|+||+|+. |+||+..+|+++.++. | |...|+||+|+
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~Ls-G-Hs~~vNcVswN  491 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLS-G-HSKTVNCVSWN  491 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeec-C-CcceeeEEecC
Confidence            589999999997665432       334444554 46689999999998 6999999999999985 3 34579999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      |...  .++|++|+||||+||.....
T Consensus       492 P~~p--~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  492 PADP--EMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCH--HHhhccCCCCeEEEecCCcc
Confidence            9987  59999999999999987654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.9e-25  Score=190.62  Aligned_cols=275  Identities=12%  Similarity=0.121  Sum_probs=204.5

Q ss_pred             CCCCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +.+|.++|.|++-+|.. ..+|+|+-|| +++||+...+++.....+  -+.-+++.+  +..+.+|       .|++|+
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg-------dDKtvK  132 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG-------DDKTVK  132 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec-------CCccee
Confidence            46899999999999988 7789999888 599999988776655443  344444433  5555555       489999


Q ss_pred             EEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc-cEEEEcCCC
Q 019672           79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAVPAST  156 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~  156 (337)
                      .|-..- .++.++-..+.+.+|..+...-..++ ...|.|||..-..++.++.....  .+.++.++|-. ..|++++  
T Consensus       133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfNpvETsILas~~--  207 (433)
T KOG0268|consen  133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFNPVETSILASCA--  207 (433)
T ss_pred             eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecCCCcchheeeec--
Confidence            998765 57888888888888887766666666 55899999988778888765443  46677777754 4566666  


Q ss_pred             CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          157 TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .|+.|.+||++....+++    ..-+.|+|+|.+--+++|++|.. ++.+|++..+.......+ |.+.|.++.|||.|+
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d-hvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD-HVSAVMDVDFSPTGQ  285 (433)
T ss_pred             cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc-cceeEEEeccCCCcc
Confidence            499999999999887765    66789999998888999999987 589999876544333333 356799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672          233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  312 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~  312 (337)
                         -+++||-|.+|+||.......+-      .|...-....+.-.|+              .|.++|++|+.||.++.|
T Consensus       286 ---EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S--------------~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  286 ---EFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYS--------------MDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             ---hhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEe--------------ccccEEEecCCCcceeee
Confidence               99999999999999987654311      1111111111222343              455899999999999999


Q ss_pred             EEec
Q 019672          313 IFSI  316 (337)
Q Consensus       313 ~~~~  316 (337)
                      .-..
T Consensus       343 ka~A  346 (433)
T KOG0268|consen  343 KAKA  346 (433)
T ss_pred             ecch
Confidence            7643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=5.3e-24  Score=199.91  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=183.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeC-CCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .++...|+.++|+|||+++++|++|. ++|||+ +.+..+.....|...+.++.|++..-.+++++     .|++|+|||
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs-----~D~tvriWd  274 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS-----DDGTVRIWD  274 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec-----CCCcEEEEe
Confidence            46788999999999999999999887 599999 55577777666554444444444332233332     599999999


Q ss_pred             CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCe--eeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +++++++..+..+. .|.+++|+++...++.   |+.|+|||+.++.  .+..+....++..+..+.++|++.+++++. 
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-  353 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-  353 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-
Confidence            99999999987665 8999999877644443   8999999999998  456665544433456677788888999887 


Q ss_pred             CCccEEEEEEccCCccccc-----C---ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          156 TTKGSVLVYNVMELHSHCE-----A---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~~~-----~---~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                       .|+.+++||+........     .   .+.+...++.|+++.+|+.|+. |++||+.++..+..+..+ ....+..+++
T Consensus       354 -~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~-v~~~~~~s~~~~~~l~~h-~~~~~~~~~~  430 (456)
T KOG0266|consen  354 -LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS-VYVWDSSSGGILQRLEGH-SKAAVSDLSS  430 (456)
T ss_pred             -CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce-EEEEeCCccchhhhhcCC-CCCceecccc
Confidence             589999999998765422     2   4455566889999999999997 699999998888777532 2567899999


Q ss_pred             ecCCCcccEEEEEe--CCCcEEEEecC
Q 019672          228 GQSMQFQDILVATS--SSGSLHVFSPG  252 (337)
Q Consensus       228 s~dg~~~~~las~s--~dg~v~iw~l~  252 (337)
                      +|..+   ++++++  .|+.|++|..+
T Consensus       431 ~~~~~---~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  431 HPTEN---LIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CCCcC---eeeecCcCCCceEEEecCC
Confidence            99998   999998  78999999754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.7e-24  Score=171.68  Aligned_cols=233  Identities=15%  Similarity=0.120  Sum_probs=174.0

Q ss_pred             eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECC
Q 019672           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDAN  121 (337)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~  121 (337)
                      .+.+..+.+.-++|+...++       .|++|++||+..|.+++++..++ +|.+++.+.+.  +..++ |..+.+||+.
T Consensus        17 qgaV~avryN~dGnY~ltcG-------sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   17 QGAVRAVRYNVDGNYCLTCG-------SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ccceEEEEEccCCCEEEEcC-------CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            35566666666777766555       49999999999999999998765 89988876544  33333 8899999999


Q ss_pred             CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--cc-----cCceEEEEeCCCCCEEEEEeC
Q 019672          122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HC-----EAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~~-----~~~i~~~~~s~dg~~lat~s~  194 (337)
                      +++.++.+.+|..  .+.++.++.+...+++++  -|.++++||.++...  ++     +..|.++.++  +..|++||.
T Consensus        90 TGkv~Rr~rgH~a--qVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~  163 (307)
T KOG0316|consen   90 TGKVDRRFRGHLA--QVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV  163 (307)
T ss_pred             cCeeeeecccccc--eeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence            9999999987654  677888888888888887  599999999987643  22     1678888875  568999999


Q ss_pred             CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc
Q 019672          195 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES  274 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~  274 (337)
                      ||+ +|.||++.|+.....-    ..+|+|++||+|++   ..++++.|+++|+.|-++++-..          .+....
T Consensus       164 DGt-vRtydiR~G~l~sDy~----g~pit~vs~s~d~n---c~La~~l~stlrLlDk~tGklL~----------sYkGhk  225 (307)
T KOG0316|consen  164 DGT-VRTYDIRKGTLSSDYF----GHPITSVSFSKDGN---CSLASSLDSTLRLLDKETGKLLK----------SYKGHK  225 (307)
T ss_pred             CCc-EEEEEeecceeehhhc----CCcceeEEecCCCC---EEEEeeccceeeecccchhHHHH----------Hhcccc
Confidence            999 5999999998765442    34799999999999   99999999999999977664321          111111


Q ss_pred             ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      -.+ +        +.-+........++.|++||.++.|+|-.++
T Consensus       226 n~e-y--------kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  226 NME-Y--------KLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             cce-e--------eeeeeecccceeEEeccCCceEEEEEeccce
Confidence            000 0        0000112233679999999999999996543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=186.29  Aligned_cols=276  Identities=14%  Similarity=0.135  Sum_probs=197.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC---cEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG---RLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      +.|.++|+.++||++|++||+++.+.. .+|.+..-   ++.++.  +..++..+.+.++.+++..++.       |..+
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~-------~e~~  293 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF-------DEVL  293 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc-------hHhe
Confidence            478899999999999999999998875 78875432   334443  3356777788888888776654       7789


Q ss_pred             EEEECCCCCEEEEEEcC--CceeEEEEcCCeEE--EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           78 CLFNTTTGTALRELNFL--TSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~--v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      ++||..+|.....++..  -.+.+.+|.|+++-  +++ |+++..||+.. ..+...+.- ....+..++..+|+.++..
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gv-r~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGV-RDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccc-ccceeEEEEEcCCCcEEEE
Confidence            99999999988887765  46788888887643  333 88999999954 334444321 2235667777778888877


Q ss_pred             cCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce--eEEEEE
Q 019672          153 PASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS--TIFSLS  226 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~--~i~~l~  226 (337)
                      ..  .|..|++|+..+....    .+.+|+++++|.||+++.+.=.+.. |++||++..+.+.++. |+..+  .|.+ +
T Consensus       372 v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~-Ghkq~~fiIrS-C  446 (519)
T KOG0293|consen  372 VT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYF-GHKQGHFIIRS-C  446 (519)
T ss_pred             Ee--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhh-cccccceEEEe-c
Confidence            77  5899999998765332    2389999999999999888777766 6999999887777664 43333  2555 5


Q ss_pred             ee-cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcc-cCEEEEEE
Q 019672          227 FG-QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK-RASVSVIT  304 (337)
Q Consensus       227 fs-~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~l~~~~  304 (337)
                      |- -+..   ++|+||.|+.|+||+...++...           .++..          ..-++.+++.|. ..++++++
T Consensus       447 Fgg~~~~---fiaSGSED~kvyIWhr~sgkll~-----------~LsGH----------s~~vNcVswNP~~p~m~ASas  502 (519)
T KOG0293|consen  447 FGGGNDK---FIASGSEDSKVYIWHRISGKLLA-----------VLSGH----------SKTVNCVSWNPADPEMFASAS  502 (519)
T ss_pred             cCCCCcc---eEEecCCCceEEEEEccCCceeE-----------eecCC----------cceeeEEecCCCCHHHhhccC
Confidence            65 3445   99999999999999987665422           22211          111222333332 24577889


Q ss_pred             eCCcEEEEEEecC
Q 019672          305 YNGYFVEYIFSIN  317 (337)
Q Consensus       305 ~dg~~~~~~~~~~  317 (337)
                      .||+++||.....
T Consensus       503 DDgtIRIWg~~~~  515 (519)
T KOG0293|consen  503 DDGTIRIWGPSDN  515 (519)
T ss_pred             CCCeEEEecCCcc
Confidence            9999999988755

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.6e-24  Score=184.70  Aligned_cols=232  Identities=13%  Similarity=0.184  Sum_probs=179.1

Q ss_pred             eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECC
Q 019672           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDAN  121 (337)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~  121 (337)
                      .+.+.++++.+....++..+       .|++++|||+.+|++..++. +-+.|..+++++.+  ++.++ |+.|+.||+.
T Consensus       151 lgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             cceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            35566777766655554433       59999999999999999988 44678999998654  44454 8899999999


Q ss_pred             CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCC
Q 019672          122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      ..+.++.+..|  -.++.+++.+|.-..|+++|+  |.+++|||+++...+     |+.+|..+.+.|-...++|||.|+
T Consensus       224 ~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~gr--Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  224 YNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGGR--DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             hhhhHHHhccc--cceeEEEeccccceeEEecCC--cceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            99888888654  457889998888889999994  999999999988765     459999999999888899999999


Q ss_pred             cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccce
Q 019672          197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVN  276 (337)
Q Consensus       197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (337)
                      + ||+||+..|+...++.  +|.-.|.+++.+|...   .+|++|.| .|+-|++..+.-..          . +.    
T Consensus       300 t-vrlWDl~agkt~~tlt--~hkksvral~lhP~e~---~fASas~d-nik~w~~p~g~f~~----------n-ls----  357 (460)
T KOG0285|consen  300 T-VRLWDLRAGKTMITLT--HHKKSVRALCLHPKEN---LFASASPD-NIKQWKLPEGEFLQ----------N-LS----  357 (460)
T ss_pred             e-EEEeeeccCceeEeee--cccceeeEEecCCchh---hhhccCCc-cceeccCCccchhh----------c-cc----
Confidence            8 6999999999988875  3456799999999987   88888887 58999987654321          1 11    


Q ss_pred             eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          277 EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       277 ~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                            .+....+.+... .+..+++|+.+|.+..|+++.-
T Consensus       358 ------gh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  358 ------GHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             ------cccceeeeeeec-cCceEEEcCCceEEEEEecCcC
Confidence                  111122222222 3378999999999999988654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.93  E-value=1.3e-24  Score=177.19  Aligned_cols=236  Identities=12%  Similarity=0.170  Sum_probs=179.0

Q ss_pred             CCCCCCeEEEEEc---CCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            4 QSSSYPVFFVSFN---QDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         4 ~~~~~~v~~~~fs---~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ++|..||-.++|+   |+|-+|++++.|+- .+-+-++|.-+-+..++.-.+....-+.|.....++     .+|-+-++
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasa-----aadftakv   85 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASA-----AADFTAKV   85 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhh-----cccchhhh
Confidence            3678899999997   58888999999986 777778887665554443333333334444333333     36889999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCC--------------------------------------------eEEEE-E-CC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKK--------------------------------------------RLVIV-L-RE  113 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~--------------------------------------------~~~v~-~-d~  113 (337)
                      ||.-+|..+..+.+..-|.+++|+.+                                            .-++. . |+
T Consensus        86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            99999888877776666666666543                                            22222 2 78


Q ss_pred             eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEE
Q 019672          114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYI  189 (337)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~l  189 (337)
                      +|++||.+++..++++....+   +.++-.++++.++.++.   .+.|.+||..+...+..    -.|.+..++|+-..+
T Consensus       166 tVRLWD~rTgt~v~sL~~~s~---VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~f  239 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEFNSP---VTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFF  239 (334)
T ss_pred             ceEEEEeccCcEEEEEecCCC---CcceeeccCCCEEEEec---CceeEEeccccccceeeccCccccccccccCCCceE
Confidence            999999999999999877544   34445566677776654   46799999998876643    668999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ++|++|+. ++.||..+|+.+..+..+ |..+|.||.|||||.   ..|+||.||+|+||.+...+
T Consensus       240 VaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrFSPdGE---~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  240 VAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRFSPDGE---LYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             EecCcceE-EEEEeccCCceeeecccC-CCCceEEEEECCCCc---eeeccCCCceEEEEEecCCC
Confidence            99999997 589999999998876455 457899999999999   99999999999999976443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.2e-24  Score=194.11  Aligned_cols=234  Identities=13%  Similarity=0.145  Sum_probs=188.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .+.|+++.|+++|++||+|..+|. .|||....+.+..... +...+-++.+....+.. +.      .|+.|..+|++.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lss-Gs------r~~~I~~~dvR~  289 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSS-GS------RDGKILNHDVRI  289 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEE-ec------CCCcEEEEEEec
Confidence            678999999999999999999995 9999988887766655 44455556666554433 33      489999999998


Q ss_pred             CCEEEE-EE-cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           85 GTALRE-LN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        85 ~~~~~~-~~-~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      .+.... +. |.+.|+.++|++++...++   |+.+.|||....++...+..|......++++|.. ..+||++|...|+
T Consensus       290 ~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  290 SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSADR  368 (484)
T ss_pred             chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCccc
Confidence            876655 44 4568999999998877766   8899999998888888887776655556666643 4488998887899


Q ss_pred             EEEEEEccCCccccc----CceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          160 SVLVYNVMELHSHCE----APLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      .|++||..++..++.    +.|.+|.|++..+.|+++.  .+.. |.||+..+.+++..+. + |...|..+++||||. 
T Consensus       369 ~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~-g-H~~RVl~la~SPdg~-  444 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELL-G-HTSRVLYLALSPDGE-  444 (484)
T ss_pred             EEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeec-C-CcceeEEEEECCCCC-
Confidence            999999999887654    8899999999988777654  3444 6899999988887774 3 466799999999999 


Q ss_pred             ccEEEEEeCCCcEEEEecCCC
Q 019672          234 QDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~  254 (337)
                        .+++|+.|.|+++|++-..
T Consensus       445 --~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  445 --TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             --EEEEecccCcEEeccccCC
Confidence              9999999999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.93  E-value=5.9e-25  Score=193.75  Aligned_cols=234  Identities=12%  Similarity=0.236  Sum_probs=184.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+|..+|..++||++|+.|.+++-|+ +++||+++|+.+...+. ....++.+.++...+.++|+      .|++|+.|
T Consensus       254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~------sd~ki~~w  327 (503)
T KOG0282|consen  254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG------SDKKIRQW  327 (503)
T ss_pred             hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec------CCCcEEEE
Confidence            457889999999999999988888777 59999999999887765 34566777777766777777      69999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+++++.+.++..+ +.|..|.|-+  .+++.++ |++++||+.+.+..+..+.. .+....-++..+|++.+++.-+  
T Consensus       328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs--  404 (503)
T KOG0282|consen  328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFAAQS--  404 (503)
T ss_pred             eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc-hhhccCcceecCCCCCeehhhc--
Confidence            99999988888654 5888888844  3444444 77999999988866655432 2222334666677888988777  


Q ss_pred             CccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          157 TKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      .|+.|.++.+......+.          +.-..|.|||||.+|++|+.||.+ .+||.++-+.+..+..  +..++..+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v-~~wdwkt~kl~~~lka--h~~~ci~v~  481 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV-NFWDWKTTKLVSKLKA--HDQPCIGVD  481 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE-EEeechhhhhhhcccc--CCcceEEEE
Confidence            589999998754332211          556789999999999999999984 8999999998888853  356788999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEe
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      |+|...  +.+|+++.||.|++|+
T Consensus       482 wHP~e~--Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEP--SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCc--ceeEecccCceeEecC
Confidence            999887  5899999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=8.9e-24  Score=194.95  Aligned_cols=274  Identities=14%  Similarity=0.147  Sum_probs=216.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      .+|...|++++|+.|...+++|+.+.+++||.++.+.+.+....-+-...+.+..+++++ |.      ..|.+.++|+.
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~-G~------k~Gel~vfdla  442 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVL-GT------KNGELQVFDLA  442 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEE-ec------cCCceEEEEee
Confidence            478889999999999999999999999999999999999987664444555555555443 33      47899999999


Q ss_pred             CCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCe-----e--------eeeecCCCCCceEEEEeeCCC
Q 019672           84 TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA-----I--------LDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      ....+.++. |.+.|..++..|++  ++.++ |.+|++||+.-..     .        .++++.   +..+.|++.+||
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spd  519 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPD  519 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCC
Confidence            888777665 55689999987754  55555 9999999984211     1        112222   345789999999


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                      +.+||++-  -|.+|+||=+.+.+-     .|.-||.|+.+|||+++++|||.|.+ |+||-+.-|.+-+.+-  .|...
T Consensus       520 gk~LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~f--AHdDS  594 (888)
T KOG0306|consen  520 GKLLAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFF--AHDDS  594 (888)
T ss_pred             CcEEEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhh--cccCc
Confidence            99999887  599999998888763     36799999999999999999999998 6999999998866663  24567


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS  301 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~  301 (337)
                      |.++.|-|...   ++.+++.|+.|+-||-++....           ..++.+..++|..+-          .+.+.+++
T Consensus       595 vm~V~F~P~~~---~FFt~gKD~kvKqWDg~kFe~i-----------q~L~~H~~ev~cLav----------~~~G~~vv  650 (888)
T KOG0306|consen  595 VMSVQFLPKTH---LFFTCGKDGKVKQWDGEKFEEI-----------QKLDGHHSEVWCLAV----------SPNGSFVV  650 (888)
T ss_pred             eeEEEEcccce---eEEEecCcceEEeechhhhhhh-----------eeeccchheeeeeEE----------cCCCCeEE
Confidence            99999999998   9999999999999997665542           345566667887754          45568999


Q ss_pred             EEEeCCcEEEEEEec
Q 019672          302 VITYNGYFVEYIFSI  316 (337)
Q Consensus       302 ~~~~dg~~~~~~~~~  316 (337)
                      +++.|-++++|....
T Consensus       651 s~shD~sIRlwE~td  665 (888)
T KOG0306|consen  651 SSSHDKSIRLWERTD  665 (888)
T ss_pred             eccCCceeEeeeccC
Confidence            999999999998754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=6.6e-23  Score=205.56  Aligned_cols=229  Identities=18%  Similarity=0.202  Sum_probs=169.7

Q ss_pred             CCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEcc-CCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            7 SYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         7 ~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ..+|.+++|++ ++++|++++.++ +++||+.+++.+.....+.  +..+.+.+ +++.++..+       .|++|++||
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd  604 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWS  604 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEE
Confidence            45789999987 478899888877 5999999888776654443  44444443 234444333       499999999


Q ss_pred             CCCCCEEEEEEcCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           82 TTTGTALRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      +++++.+..+..+..+.++.|++   ..++++. |+.|++||+++.+ .+..+..+.  ..+.++.+. ++.++++++  
T Consensus       605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~-~~~~lvs~s--  679 (793)
T PLN00181        605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFV-DSSTLVSSS--  679 (793)
T ss_pred             CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC--CCEEEEEEe-CCCEEEEEE--
Confidence            99999998888778899998843   3455555 8999999998765 344554443  345566664 456778777  


Q ss_pred             CccEEEEEEccCC------ccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc----------
Q 019672          157 TKGSVLVYNVMEL------HSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----------  215 (337)
Q Consensus       157 ~dg~v~i~d~~~~------~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~----------  215 (337)
                      .|++|++||+...      ..+     |...+++++|+|++.+||+|+.||+ |++|+...+..+..+..          
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~-v~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNE-VFVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCE-EEEEECCCCCceEEEecccCCcccccc
Confidence            5999999999743      111     3477899999999999999999998 68999876654432211          


Q ss_pred             -CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          216 -GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       216 -~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                       ..+...|.+++|+|++.   +|++|+.||+|+||++
T Consensus       759 ~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~  792 (793)
T PLN00181        759 VDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence             11234599999999999   9999999999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=5.2e-23  Score=175.90  Aligned_cols=234  Identities=13%  Similarity=0.188  Sum_probs=172.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|+..|+++.||.||.+||+|.-+| ++||...++.......  ..++..+.+.+  ...++..|     ..|+.|.+
T Consensus       102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp--~a~illAG-----~~DGsvWm  174 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP--RAHILLAG-----STDGSVWM  174 (399)
T ss_pred             ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc--cccEEEee-----cCCCcEEE
Confidence            357999999999999999999999887 5999999997766653  34455555443  33333333     26999999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCC-------------------Cc
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPN-------------------LK  136 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~-------------------~~  136 (337)
                      |.+..+.....+.. ..++.+=.|.|++  ++.+. |++|++||+.++++++.+....+                   ..
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCC
Confidence            99988655555544 4477776776554  44444 89999999999998887751110                   00


Q ss_pred             eE----------EEEeeC-----------------------CCccEEEEcCCCCccEEEEEEccCCccc----ccCceEE
Q 019672          137 GL----------CAFSPS-----------------------LNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLAA  179 (337)
Q Consensus       137 ~~----------~~~~~~-----------------------~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~~  179 (337)
                      +.          +-.+.+                       ..-++.|+++  -||+|.|||+.+.+..    |+.+|..
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--VDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--ccceEEEEecccchhheeccCCCceEE
Confidence            00          001111                       1112334443  6999999999877654    4488999


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +.|-+ ..+|++++.+|. ||.||.++|+++.++. | |...|.+++++|+.+   +++++|.|++.+||+++
T Consensus       333 l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~-G-H~~~Il~f~ls~~~~---~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYT-G-HQMGILDFALSPQKR---LVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcC-cchheeeccCce-EEeeeccccceEEEEe-c-CchheeEEEEcCCCc---EEEEecCCCeEEEEecC
Confidence            99999 679999999997 6999999999999885 4 467899999999999   99999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.5e-23  Score=194.95  Aligned_cols=239  Identities=13%  Similarity=0.140  Sum_probs=186.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ++....|-.++|+|..-++.++--.|+ ++||..=+.++.....|+-.+-.+.|++..=++++||     .|.+|++|+.
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG-----DDykIkVWnY   80 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG-----DDYKIKVWNY   80 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC-----CccEEEEEec
Confidence            455678999999999999999988885 9999877777655544333333444555555567776     6999999999


Q ss_pred             CCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           83 TTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ++.+++.++..+ ..|+.+.|++.+-.+.+   |.+|+||+..+.+.+..+..|.+  .++|-.++|...++++++  -|
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVSaS--LD  156 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVSAS--LD  156 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEEec--cc
Confidence            999999887655 47999999998866544   67999999999999999876644  788888888888888887  59


Q ss_pred             cEEEEEEccCCccc----------------------------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          159 GSVLVYNVMELHSH----------------------------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       159 g~v~i~d~~~~~~~----------------------------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                      .+|+|||+...+..                                  |...|+-++|+|.-.+|++|++|.. |++|.+
T Consensus       157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWrm  235 (1202)
T KOG0292|consen  157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWRM  235 (1202)
T ss_pred             ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEEe
Confidence            99999998643211                                  1256899999999999999999976 799998


Q ss_pred             CCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          205 SEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       205 ~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ..-+. .....+|| ...|.|+-|+|...   ++++.|.|++|+|||+.+.+.
T Consensus       236 netKaWEvDtcrgH-~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  236 NETKAWEVDTCRGH-YNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             ccccceeehhhhcc-cCCcceEEecCccc---eeEecCCCccEEEEecccccc
Confidence            65432 11223453 45799999999887   999999999999999976543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.2e-24  Score=188.46  Aligned_cols=274  Identities=14%  Similarity=0.124  Sum_probs=198.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ...|.+++..+.|-++...|++|+.+. +++|++...+  ++-...+..-.+..+.|++ +...+.++      .|+.++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas------~d~~~r  244 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS------NDKNLR  244 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec------CCCcee
Confidence            457889999999999988899988877 5999988776  2223322222233444444 23333343      599999


Q ss_pred             EEECCCCCEEEEEEcCC-ceeEEEEcCCeE-EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           79 LFNTTTGTALRELNFLT-SILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      +||....+...++..|. .|+++.|..... +|.+  |.+|++||+......+++........+++   +   ...+++|
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~---~---~~~~~Sg  318 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC---S---ISDVISG  318 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe---c---ceeeeec
Confidence            99999999888887665 899998865554 4433  78999999998877777654333333332   1   2444555


Q ss_pred             CCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc--ceeEEEEEee
Q 019672          155 STTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSFG  228 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~l~fs  228 (337)
                      . .|+.|++||.++......    +.|+++..+++|..|.+.+.|.+ +.+.|+++.+....+.....  .+..+.+.||
T Consensus       319 H-~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvfS  396 (459)
T KOG0288|consen  319 H-FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS  396 (459)
T ss_pred             c-cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEEC
Confidence            5 699999999998876543    88999999999999999999987 69999999887777642211  1248889999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccc-ccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP-ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      |++.   |+|+||.||.|+||++.+++-.....      ....+ ......|++.+              ..+++.+.++
T Consensus       397 pd~~---YvaAGS~dgsv~iW~v~tgKlE~~l~------~s~s~~aI~s~~W~~sG--------------~~Llsadk~~  453 (459)
T KOG0288|consen  397 PDGS---YVAAGSADGSVYIWSVFTGKLEKVLS------LSTSNAAITSLSWNPSG--------------SGLLSADKQK  453 (459)
T ss_pred             CCCc---eeeeccCCCcEEEEEccCceEEEEec------cCCCCcceEEEEEcCCC--------------chhhcccCCc
Confidence            9999   99999999999999998876543211      11111 34456777755              6788888888


Q ss_pred             cEEEEE
Q 019672          308 YFVEYI  313 (337)
Q Consensus       308 ~~~~~~  313 (337)
                      .+.+|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            888883

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.92  E-value=1.5e-22  Score=186.90  Aligned_cols=290  Identities=14%  Similarity=0.132  Sum_probs=197.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +++|+..|+++.|+..|.+||+|+.|+ +.|||+-...-++..++|.-.++.+.|...--.+++.+     .|+.|++||
T Consensus       103 fngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s-----KDs~iK~Wd  177 (888)
T KOG0306|consen  103 FNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVS-----KDSMIKFWD  177 (888)
T ss_pred             ecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEec-----cCceEEEEe
Confidence            457999999999999999999999998 59999988888888887777777766655222233332     599999999


Q ss_pred             CCCCCEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCC------------------------CeeeeeecC----
Q 019672           82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANT------------------------LAILDTIDT----  131 (337)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~------------------------~~~~~~~~~----  131 (337)
                      +++..+..+.- +...+.++.+.++.++.+. |..+++|++..                        ++.+.....    
T Consensus       178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r  257 (888)
T KOG0306|consen  178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR  257 (888)
T ss_pred             cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence            99988877653 4457888888776665555 77777887710                        000000000    


Q ss_pred             --------------------------------------------------------------------------------
Q 019672          132 --------------------------------------------------------------------------------  131 (337)
Q Consensus       132 --------------------------------------------------------------------------------  131 (337)
                                                                                                      
T Consensus       258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~  337 (888)
T KOG0306|consen  258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT  337 (888)
T ss_pred             EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence                                                                                            


Q ss_pred             --------------------------------CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------
Q 019672          132 --------------------------------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------  171 (337)
Q Consensus       132 --------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------  171 (337)
                                                      ..+...+-+++.+.++..+++++   .+.++||+..+.++        
T Consensus       338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga---~~SikiWn~~t~kciRTi~~~y  414 (888)
T KOG0306|consen  338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA---GESIKIWNRDTLKCIRTITCGY  414 (888)
T ss_pred             EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC---CCcEEEEEccCcceeEEecccc
Confidence                                            00000123445555555666554   45666666553321        


Q ss_pred             -------------------------------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-----Cce
Q 019672          172 -------------------------------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-----ATK  209 (337)
Q Consensus       172 -------------------------------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-----~~~  209 (337)
                                                           .|++.|..++.+||++.++|||.|.+ |++||..-     |..
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~l~~~~~gt~  493 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFKLVVSVPGTQ  493 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEEEEeccCccc
Confidence                                                 13488999999999999999999987 69999741     222


Q ss_pred             eEeeccCCc-----ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccc
Q 019672          210 SYSFRRGTY-----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  284 (337)
Q Consensus       210 ~~~~~~~~~-----~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  284 (337)
                      -+.+...+.     ...|.|+++||||+   +||++--|+||+||-+++-+=..      ...|.-||            
T Consensus       494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk---~LaVsLLdnTVkVyflDtlKFfl------sLYGHkLP------------  552 (888)
T KOG0306|consen  494 KKVLSLKHTRTLELEDDVLCVSVSPDGK---LLAVSLLDNTVKVYFLDTLKFFL------SLYGHKLP------------  552 (888)
T ss_pred             ceeeeeccceEEeccccEEEEEEcCCCc---EEEEEeccCeEEEEEecceeeee------eecccccc------------
Confidence            111211111     23599999999999   99999999999999998654211      22233344            


Q ss_pred             eeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceE
Q 019672          285 HVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWT  325 (337)
Q Consensus       285 ~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~  325 (337)
                         +..+...++.+.|++++.|..+++|.++--.|-...+.
T Consensus       553 ---V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA  590 (888)
T KOG0306|consen  553 ---VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA  590 (888)
T ss_pred             ---eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence               23334467779999999999999999988777654444

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.2e-22  Score=185.18  Aligned_cols=268  Identities=12%  Similarity=0.087  Sum_probs=205.2

Q ss_pred             EEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      +-++|+ ....||+|....+.+|+..+++...-.+  ...+..+.+.+++..+++...       ++.|.|||.++.+.+
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQKKT  252 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec-------CCeEEEEehhhcccc
Confidence            345777 4456899999999999999887543333  356777777778888877654       899999999998888


Q ss_pred             EEEEc--CCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672           89 RELNF--LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus        89 ~~~~~--~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      .++..  ...|-+++|+...+..+. ++.|..+|++..+.... ....+...+|.+.+++++.++|++|  .|+.+.|||
T Consensus       253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGg--nDN~~~Iwd  329 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGG--NDNVVFIWD  329 (484)
T ss_pred             ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCC--CccceEecc
Confidence            88776  458999999976666665 89999999998766555 2334566899999999999999998  599999999


Q ss_pred             ccCCccc-----ccCceEEEEeCC-CCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672          166 VMELHSH-----CEAPLAAIVLSS-NGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       166 ~~~~~~~-----~~~~i~~~~~s~-dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      .......     |++.|.+++|+| ...+||+|+  .|+. |++||+.+|+.+.....   .+.|.+|.|++..+   -|
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~k---Ei  402 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYK---EL  402 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCC---EE
Confidence            9655543     459999999999 667899875  6776 79999999999887753   45799999999987   45


Q ss_pred             EEEe--CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          238 VATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       238 as~s--~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      +++.  .++.|.||+..+.+....                     ...|...+.+++..|++.+|++|+.|.+++.|++.
T Consensus       403 ~sthG~s~n~i~lw~~ps~~~~~~---------------------l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPSMKLVAE---------------------LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEecCCCCCcEEEEeccccceeee---------------------ecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            5443  346799999877443221                     11222233444446677999999999999999997


Q ss_pred             cC
Q 019672          316 IN  317 (337)
Q Consensus       316 ~~  317 (337)
                      +.
T Consensus       462 ~~  463 (484)
T KOG0305|consen  462 DE  463 (484)
T ss_pred             CC
Confidence            75

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=2.8e-22  Score=174.80  Aligned_cols=278  Identities=14%  Similarity=0.160  Sum_probs=208.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      ....|+++...|....+++|+.+ ...+||..+++.+....++...++...+++.......+     ++|..|+||....
T Consensus       218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a-----Sad~~i~vws~~~  292 (506)
T KOG0289|consen  218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA-----SADEIIRVWSVPL  292 (506)
T ss_pred             CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec-----CCcceEEeecccc
Confidence            34578899988887788999988 57999999999888888888888888887766555555     3799999999765


Q ss_pred             CCEEE-EEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           85 GTALR-ELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        85 ~~~~~-~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      ..... ...+.++|+.+..++  ++++.+. |+...+.|++++..+.......+...+.+..++||+..++++.  .||.
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~  370 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGV  370 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCce
Confidence            54333 345667999998865  4555555 7899999999998876665434456678889999998888876  5999


Q ss_pred             EEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          161 VLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       161 v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      |+|||+.++...     |+++|..++|+.+|.+||++++|+. |++||++.-+..+++.... ..++.++.|.+.|+   
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt---  445 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGT---  445 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeeccc-cccceeEEEcCCCC---
Confidence            999999987643     6699999999999999999999998 6999999888777775432 23699999999999   


Q ss_pred             EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                      +|+.++.|=+|++++-.+.        .+..+. .++          .+..+...+.|+....++++++.|..+++|.+
T Consensus       446 ~L~~~g~~l~Vy~~~k~~k--------~W~~~~-~~~----------~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  446 YLGIAGSDLQVYICKKKTK--------SWTEIK-ELA----------DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEeecceeEEEEEecccc--------cceeee-hhh----------hcccccceeeecccceEEeeccchhheEEeec
Confidence            9999988766666652211        111111 111          11112223445666678889999999888865

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=4.7e-23  Score=182.03  Aligned_cols=267  Identities=14%  Similarity=0.154  Sum_probs=186.8

Q ss_pred             CCCeEEEEEcCCCCE-EEEEcCCceEEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~-la~g~~~g~~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      .++|++++|+|..-+ +|+.+..++.+|+..+...+..  .-...+..+++..++.+++.. +      ..|.|+|+|.+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG-D------~sG~V~vfD~k   98 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG-D------ESGHVKVFDMK   98 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc-C------CcCcEEEeccc
Confidence            457999999997766 8999999999999877644322  112445556665556555433 2      47999999976


Q ss_pred             CCCEEEEE-EcCCceeEEEEcCCeEE---EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-EEEEcCCCC
Q 019672           84 TGTALREL-NFLTSILAVRLNKKRLV---IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTT  157 (337)
Q Consensus        84 ~~~~~~~~-~~~~~v~~i~~~~~~~~---v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~~~  157 (337)
                      +...+..+ .+..+|..+.|+++...   .+. |..+++||+.+...+..+..+.+  .+-+.+.+|.+. .++++|  .
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtGs--Y  174 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTGS--Y  174 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEecC--C
Confidence            64444444 34568888998775432   233 55889999998876556665544  555556655554 555666  4


Q ss_pred             ccEEEEEEccCCc-c----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          158 KGSVLVYNVMELH-S----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       158 dg~v~i~d~~~~~-~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      ||.|++||+++.. .    -|..||..+.+-|.|.+||+++..  .+||||+.+|..+-..... |.-.|+||++..+++
T Consensus       175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn--~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN--SVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDST  251 (487)
T ss_pred             CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC--eEEEEEecCCceehhhhhc-ccceEEEEEeecCCc
Confidence            9999999998763 2    245999999999999999998854  5799999966554333222 455799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672          233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  312 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~  312 (337)
                         .|++||-|+.|+|||+..-+-..    +++|.+.++                  .++-.+++..+++|-+||.+.+=
T Consensus       252 ---rLlS~sLD~~VKVfd~t~~Kvv~----s~~~~~pvL------------------siavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  252 ---RLLSGSLDRHVKVFDTTNYKVVH----SWKYPGPVL------------------SIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             ---eEeecccccceEEEEccceEEEE----eeeccccee------------------eEEecCCCceEEEecccceeeee
Confidence               99999999999999976544321    112221111                  11224566889999999988776

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=190.61  Aligned_cols=270  Identities=14%  Similarity=0.147  Sum_probs=200.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE-Eee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE-RAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +...+++..|.  ..++.+++++.. ++|+..++..+.. ..+  +++..+++..-.+.++..+       .|.++++||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS-------~D~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS-------TDKTERVWD  277 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe-------cCCcEEeEe
Confidence            35668888888  446777777764 8999999988776 544  4555555554366665554       499999999


Q ss_pred             CCCCCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      ..+|+++..+..+ +.|.++...+..++.++ |.+|++|++.+++.++.+..+..  .+.++..+  +.++++++  .||
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--~V~~v~~~--~~~lvsgs--~d~  351 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--PVNCVQLD--EPLLVSGS--YDG  351 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc--cEEEEEec--CCEEEEEe--cCc
Confidence            9999999998854 46788877776666644 99999999999999998876444  46666665  44777777  489


Q ss_pred             EEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeeccCCcceeEEEEEeecCCCc
Q 019672          160 SVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       160 ~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      +|++||+.+++.+     |...|.++.+.+. ..+.+|+.|++ |++||+.++ +++.++.  .+.+.+.++.+.  ++ 
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~--~h~~~v~~l~~~--~~-  424 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQ--GHTSLVSSLLLR--DN-  424 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhc--CCcccccccccc--cc-
Confidence            9999999988766     4489999998776 79999999987 799999999 8888875  245556665554  56 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        +|++++.|++|++||...+...+..+.+          ....++...          .+  ...+++.+.||++++|+
T Consensus       425 --~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----------~~~~v~~l~----------~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  425 --FLVSSSADGTIKLWDAEEGECLRTLEGR----------HVGGVSALA----------LG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             --eeEeccccccEEEeecccCceeeeeccC----------CcccEEEee----------cC--cceEEEEecCCeeEEEe
Confidence              8999999999999999877654431111          001111111          11  26799999999999999


Q ss_pred             EecCCCCe
Q 019672          314 FSINNCCE  321 (337)
Q Consensus       314 ~~~~~~~~  321 (337)
                      +++.+..+
T Consensus       481 l~~~~~~~  488 (537)
T KOG0274|consen  481 LRSGTLIR  488 (537)
T ss_pred             cccCchhh
Confidence            98776653

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=1.6e-23  Score=175.65  Aligned_cols=218  Identities=15%  Similarity=0.211  Sum_probs=167.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .++|+.++++.+|+|||+++|+|+.|. ++|+|++-.  +.....     .++         ..++              
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildverm--laks~~-----~em---------~~~~--------------  157 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM--LAKSKP-----KEM---------ISGD--------------  157 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhh--hhhcch-----hhh---------ccCC--------------
Confidence            357889999999999999999999876 699997521  110000     011         1111              


Q ss_pred             CCCCC-EEEE-EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           82 TTTGT-ALRE-LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        82 ~~~~~-~~~~-~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ...+. .+++ +.|..+|.++.|+|..-++++   |++|++||+......+.++.-.+...+.+++++|.+.+++.+.  
T Consensus       158 ~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--  235 (430)
T KOG0640|consen  158 TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--  235 (430)
T ss_pred             cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--
Confidence            11111 2333 456679999999987655544   8899999997654333343333445677888889888988876  


Q ss_pred             CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          157 TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      +-..+++||+.+-+.        .|++.|+++.+|+.|++-+|||.||. |||||--+++++.++...|..++|.+..|+
T Consensus       236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ft  314 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFT  314 (430)
T ss_pred             CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence            457899999987654        35589999999999999999999997 799999999999999888888899999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .+|+   |+++.+.|.+|++|.+.++..
T Consensus       315 kn~k---yiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  315 KNGK---YILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cCCe---EEeecCCcceeeeeeecCCce
Confidence            9999   999999999999999988654

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=7.3e-22  Score=186.60  Aligned_cols=218  Identities=10%  Similarity=0.036  Sum_probs=152.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcC-CceeEEEEcCC---eEEEEE-CCeEEEEECCCCe--------eeeeecCCCCCceEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFL-TSILAVRLNKK---RLVIVL-REKTYIYDANTLA--------ILDTIDTVPNLKGLC  139 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~  139 (337)
                      .++.|++|+..+...+..+..+ .+|.+++|+++   .++.++ |++|+|||+.++.        .+..+..|  ...+.
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--~~~V~  129 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--KKKIS  129 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC--CCcEE
Confidence            5889999998877777777644 58999999874   344444 8999999997642        12233333  34567


Q ss_pred             EEeeCCCccEE-EEcCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          140 AFSPSLNACFL-AVPASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       140 ~~~~~~~~~~l-a~~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +++++|++..+ ++++  .|+.|+|||+.+++..    +...|.+++|+|+|++|++++.|++ |+|||+++++.+.++.
T Consensus       130 sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEEe
Confidence            77778877654 5666  5999999999987643    2377999999999999999999997 6999999999988875


Q ss_pred             cCCcce----eEEEEEeecCCCcccEEEEEeCCC----cEEEEecCCCcccCCCCcccccccccccccceeeccccccee
Q 019672          215 RGTYPS----TIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  286 (337)
Q Consensus       215 ~~~~~~----~i~~l~fs~dg~~~~~las~s~dg----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  286 (337)
                      . |...    .+....|++++.   +|++++.|+    +|+|||++....+...     ......+......|..     
T Consensus       207 g-H~g~~~s~~v~~~~fs~d~~---~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----~~ld~~~~~L~p~~D~-----  272 (568)
T PTZ00420        207 I-HDGGKNTKNIWIDGLGGDDN---YILSTGFSKNNMREMKLWDLKNTTSALVT-----MSIDNASAPLIPHYDE-----  272 (568)
T ss_pred             c-ccCCceeEEEEeeeEcCCCC---EEEEEEcCCCCccEEEEEECCCCCCceEE-----EEecCCccceEEeeeC-----
Confidence            3 2221    234456789988   888888774    7999999864332210     0000000001112222     


Q ss_pred             eeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          287 LRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                              ..+..+++|+.|+.+++|++..+
T Consensus       273 --------~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        273 --------STGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             --------CCCCEEEEEECCCeEEEEEccCC
Confidence                    12367889999999999999654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=2.3e-23  Score=175.68  Aligned_cols=272  Identities=14%  Similarity=0.196  Sum_probs=199.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE----Ee------eCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE----RA------VGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      +.++.+.|..|+|||++|++|+.||+ .|||..+|++...    .+      ...+.++.+.-++..++  +|     +.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlA--sG-----sq  283 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLA--SG-----SQ  283 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhh--cc-----Cc
Confidence            34667889999999999999999998 8999999976422    11      23344444444444443  44     36


Q ss_pred             CceEEEEECCCCCEEEEEE--cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           74 PRRLCLFNTTTGTALRELN--FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~--~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      |++|++|.+++|.+++.+.  |...|+++.|+.+.--+  ++ |.++++.-++.++.+++++.|..  .+.-..+.+++.
T Consensus       284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS--yvn~a~ft~dG~  361 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS--YVNEATFTDDGH  361 (508)
T ss_pred             CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc--cccceEEcCCCC
Confidence            9999999999999998876  45589999998765433  33 88999999999999999987755  344445567888


Q ss_pred             EEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-  219 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-  219 (337)
                      ++++++  .||+|++|+.++..+..+       .+|+++-.-|. ...++.+....+ +.|-+++ |+.+..|..|... 
T Consensus       362 ~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q-GQvVrsfsSGkREg  437 (508)
T KOG0275|consen  362 HIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ-GQVVRSFSSGKREG  437 (508)
T ss_pred             eEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc-ceEEeeeccCCccC
Confidence            999988  499999999998877643       77888888774 446777776666 5688875 7888888655432 


Q ss_pred             eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCE
Q 019672          220 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS  299 (337)
Q Consensus       220 ~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  299 (337)
                      +..-+.+.||.|.   ++.+.+.|+.++.|.+..++-.+.           +|-....+...          +-+|..+.
T Consensus       438 GdFi~~~lSpkGe---wiYcigED~vlYCF~~~sG~LE~t-----------l~VhEkdvIGl----------~HHPHqNl  493 (508)
T KOG0275|consen  438 GDFINAILSPKGE---WIYCIGEDGVLYCFSVLSGKLERT-----------LPVHEKDVIGL----------THHPHQNL  493 (508)
T ss_pred             CceEEEEecCCCc---EEEEEccCcEEEEEEeecCceeee-----------eeccccccccc----------ccCcccch
Confidence            2355668999999   999999999999999887765432           22111111111          11344577


Q ss_pred             EEEEEeCCcEEEEE
Q 019672          300 VSVITYNGYFVEYI  313 (337)
Q Consensus       300 l~~~~~dg~~~~~~  313 (337)
                      |++-++||.++.|.
T Consensus       494 lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  494 LASYSEDGLLKLWK  507 (508)
T ss_pred             hhhhcccchhhhcC
Confidence            88889999998883

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=5.7e-22  Score=186.65  Aligned_cols=235  Identities=15%  Similarity=0.182  Sum_probs=187.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +.+|.+.|++++|..-+.+|.+|+.| .++|||+.+++......++.-.+.++......+  ++|     +.|++|++||
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~--~sg-----s~D~tVkVW~  317 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLL--VSG-----SRDNTVKVWD  317 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceE--eec-----cCCceEEEEe
Confidence            45889999999999877788888855 579999999999988876665555554434333  333     3699999999


Q ss_pred             CCCCCEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      +.++..+..+. +..+|.++.++.+.++.++ |++|++||+.+++.++.+..|.  ..+.++..++. ..++.++  .|+
T Consensus       318 v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~--~~V~sl~~~~~-~~~~Sgs--~D~  392 (537)
T KOG0274|consen  318 VTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT--GRVYSLIVDSE-NRLLSGS--LDT  392 (537)
T ss_pred             ccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--ceEEEEEecCc-ceEEeee--ecc
Confidence            99999999988 7779999999987777776 8999999999999999998754  46777766553 5677666  589


Q ss_pred             EEEEEEccCC-ccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          160 SVLVYNVMEL-HSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       160 ~v~i~d~~~~-~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      +|++||+.+. +..+.     +-+..+.  ..+++|++++.||+ |++||..+++++..+... +...|.++++.  .. 
T Consensus       393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~-  465 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KE-  465 (537)
T ss_pred             ceEeecCCchhhhhhhhcCCcccccccc--cccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cc-
Confidence            9999999999 66543     4454444  46789999999997 799999999999988543 34568888876  23 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccC
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                        .+++++.||++++||++.....+
T Consensus       466 --~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  466 --EILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             --eEEEEecCCeeEEEecccCchhh
Confidence              79999999999999999877644

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.8e-21  Score=160.56  Aligned_cols=232  Identities=14%  Similarity=0.151  Sum_probs=176.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--cEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--RLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .+|+..|++++|+|.|++||+|+-|.. .||.-..+  +.+..++  ...+.++++..+++++|+++.       |+.|-
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR-------DKSVW  130 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR-------DKSVW  130 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC-------CCeEE
Confidence            368889999999999999999998875 89976655  4444444  356788888889999999875       89999


Q ss_pred             EEECCCCCEE---EEE-EcCCceeEEEEcC--CeEEEEE-CCeEEEEECC-CC--eeeeeecCCCCCceEEEEeeCCCcc
Q 019672           79 LFNTTTGTAL---REL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDAN-TL--AILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        79 iwd~~~~~~~---~~~-~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      ||....+...   .-+ .|.+.|..+.|+|  +.++.++ |++|++|.-. ..  +.++++..+.+  .+.++.+++.+.
T Consensus       131 iWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~  208 (312)
T KOG0645|consen  131 IWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGS  208 (312)
T ss_pred             EEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCc
Confidence            9998755433   333 3556899999999  4555555 9999999765 22  56777776654  677888888888


Q ss_pred             EEEEcCCCCccEEEEEEccCC-cccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc------eeEeeccCCccee
Q 019672          149 FLAVPASTTKGSVLVYNVMEL-HSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------KSYSFRRGTYPST  221 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~-~~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~------~~~~~~~~~~~~~  221 (337)
                      .|++++  .|++|+||...+. ...|..++..++|. + ..||+++.|+. |+||.-..+-      ++... .+.|...
T Consensus       209 rl~s~s--dD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~-i~lf~~s~~~d~p~~~l~~~~-~~aHe~d  282 (312)
T KOG0645|consen  209 RLVSCS--DDGTVSIWRLYTDLSGMHSRALYDVPWD-N-GVIASGGGDDA-IRLFKESDSPDEPSWNLLAKK-EGAHEVD  282 (312)
T ss_pred             eEEEec--CCcceEeeeeccCcchhcccceEeeeec-c-cceEeccCCCE-EEEEEecCCCCCchHHHHHhh-hcccccc
Confidence            999888  6999999996543 33455899999998 4 47999999997 7999765431      11111 2334557


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |+++.|+|...  +.|++|++||.|++|.+.
T Consensus       283 VNsV~w~p~~~--~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  283 VNSVQWNPKVS--NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cceEEEcCCCC--CceeecCCCceEEEEEec
Confidence            99999999544  489999999999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5e-22  Score=175.59  Aligned_cols=228  Identities=15%  Similarity=0.214  Sum_probs=174.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      +..|+++.|-.||++||+|.+.| ++|||..+...+.  ..+..++-.+.+.+..+.++..++      .|+.+++||+.
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s  141 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLS  141 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC------CCceEEEEEcC
Confidence            45789999999999999999888 5999965533322  223356666777766676655554      68999999999


Q ss_pred             CCCEEEEEEcCC-ceeEEEEcCC--eEEEEE--CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           84 TGTALRELNFLT-SILAVRLNKK--RLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        84 ~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      +...+.++..+. .|.+.++++.  ++++.+  |++|++||++.. ..+.++. ++.|..  .+.+-|.+..+|++|   
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe--~vl~lpsgs~iasAg---  215 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVE--SVLALPSGSLIASAG---  215 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCcee--eEEEcCCCCEEEEcC---
Confidence            887655665444 7999998763  455544  999999999877 5555664 333333  233335567999988   


Q ss_pred             ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      ...|+|||+.++...      |...|+|+++..+++.|.+||-||. +++||+.+-+.+..++   .+++|.+++.|||+
T Consensus       216 Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNYKVVHSWK---YPGPVLSIAVSPDD  291 (487)
T ss_pred             CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc-eEEEEccceEEEEeee---cccceeeEEecCCC
Confidence            478999999966542      5589999999999999999999998 5999999989888875   36789999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCC
Q 019672          232 QFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +   .++.|-.+|.+-+=+...
T Consensus       292 ~---t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  292 Q---TVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             c---eEEEecccceeeeehhhc
Confidence            9   999999999987765433

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=2.1e-21  Score=182.27  Aligned_cols=232  Identities=11%  Similarity=0.056  Sum_probs=161.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEE---------------EEeeCCEEEEEEcc-CCCEEEEEeCCCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCY---------------ERAVGAFSIVEMLY-SSSLLAIVGAGEQPS   71 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~   71 (337)
                      .|+....++|++.++++..+.+ ..|+...+..+.               ..+.+.+..+.+.+ +.+.++.++      
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS------   95 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS------   95 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe------
Confidence            4666677788777777766665 778765543322               11223455555554 445554443      


Q ss_pred             CCCceEEEEECCCCC-------EEEEEE-cCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           72 LSPRRLCLFNTTTGT-------ALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~-------~~~~~~-~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                       .|++|++||+.++.       ++..+. |...|.++.|++.   .++.++ |+.|+|||+.+++.+..+..+..  .+.
T Consensus        96 -~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--~V~  172 (493)
T PTZ00421         96 -EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--QIT  172 (493)
T ss_pred             -CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--ceE
Confidence             59999999997652       344554 4458999999874   344444 89999999999988878765543  577


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----C-ceEEEEeCCCCCEEEEEe----CCCcEEEEEEcCCCce
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----A-PLAAIVLSSNGMYIATAS----EQGTIIRVFLVSEATK  209 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~-~i~~~~~s~dg~~lat~s----~dg~~i~vwd~~~~~~  209 (337)
                      ++++++++.++++++  .|+.|++||+++++....     + .+..+.|.+++..|++++    .|+. |++||+++...
T Consensus       173 sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~~  249 (493)
T PTZ00421        173 SLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMAS  249 (493)
T ss_pred             EEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCCC
Confidence            778888888999888  599999999998775432     2 345778999888887764    4676 69999987653


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCc
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI  255 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~  255 (337)
                      ............+....|++|++   +|++++ .|++|++||+..+.
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~---~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTN---LLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCC---EEEEEEeCCCeEEEEEeeCCc
Confidence            32221222233466678999999   888877 59999999998654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.3e-21  Score=164.08  Aligned_cols=235  Identities=15%  Similarity=0.216  Sum_probs=172.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +++...|.++.|+|.++.|++++.|| +++|+.....+..... ++..++++.|....-+++++      .|+.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~------~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGG------LDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEec------cCceEEEEEe
Confidence            46788999999999988877777766 6999998876555443 33445555565555566665      5999999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           83 TTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      .++....--.|..+|.+|...+  +.++.++ |++|++||.+.......+..   +..+.+++..++  .|+++.  .+.
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v~g~--~LvVg~--~~r  155 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDVSGN--RLVVGT--SDR  155 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc---CceEEEEeccCC--EEEEee--cCc
Confidence            9998777777888999999873  4444444 99999999997555555543   346888887665  444444  378


Q ss_pred             EEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC----ceeEeeccCC----c---cee
Q 019672          160 SVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGT----Y---PST  221 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~----~~~~~~~~~~----~---~~~  221 (337)
                      .|.+||+++.....+       -.+.||++-|++.=.|.+|-||++ .+=.+...    .+-+.|+-+-    .   --+
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            899999998876542       679999999998889999999984 45333333    2223332110    0   125


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      |++|+|+|--+   .||||+.||.|.+||+...+.
T Consensus       235 VNai~Fhp~~~---tfaTgGsDG~V~~Wd~~~rKr  266 (323)
T KOG1036|consen  235 VNAIAFHPIHG---TFATGGSDGIVNIWDLFNRKR  266 (323)
T ss_pred             eceeEeccccc---eEEecCCCceEEEccCcchhh
Confidence            99999999977   999999999999999876554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=4.4e-23  Score=175.39  Aligned_cols=230  Identities=11%  Similarity=0.202  Sum_probs=174.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +.+|.+.|.|+.|...  .+++|+.|. ++|||.++++.+...-+|-..++.+.++.++++.++       .|+++++||
T Consensus       233 L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcS-------kDrsiaVWd  303 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCS-------KDRSIAVWD  303 (499)
T ss_pred             hhcCCCcEEeeeccce--EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEec-------CCceeEEEe
Confidence            4578999999998655  788888876 699999999987665445555666677788877765       499999999


Q ss_pred             CCCCCEEEE----EEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           82 TTTGTALRE----LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        82 ~~~~~~~~~----~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      +.....+.-    ..|-..|..+.|+.++++.++ |.+|++|++.+.+.++++..|  ..++.|+...  +.++++++  
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr--~rlvVSGS--  377 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGS--  377 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--cccceehhcc--CeEEEecC--
Confidence            986553211    234457888999988877776 889999999999999888654  4577776654  34666555  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe-------eccCCcceeEEE
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS-------FRRGTYPSTIFS  224 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~-------~~~~~~~~~i~~  224 (337)
                      .|.+|++||+..+..+     |+.-|.|+.|+  .+.|++|+.||+ |||||+..+.....       ...-.+.+.|..
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr  454 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR  454 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhhccceeEE
Confidence            5999999999998764     45779999995  578999999998 79999987754311       111123457999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +.|.  ..   .+++++.|.+|-|||...+.
T Consensus       455 LQFD--~f---qIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  455 LQFD--EF---QIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             Eeec--ce---EEEeccCCCeEEEEEcCCCC
Confidence            9995  33   69999999999999986543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.90  E-value=5.8e-23  Score=167.64  Aligned_cols=192  Identities=18%  Similarity=0.257  Sum_probs=151.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcE---EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL---CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .|+--|..++|++|..+|++|+...+ ||||++.-+-   .+..+.+++.-+.++...+.++.. .      .|++||+|
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS-a------dd~tVRLW  170 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS-A------DDKTVRLW  170 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee-c------cCCceEEE
Confidence            35667999999999999999998875 9999865432   123334566666666555554433 3      59999999


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCeEE--EEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKRLV--IVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~--v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      |.++++.+.++.++++|.++.+++++-+  ++..+.|.+||..+..+++.++.+.+   +.+-+.+|+...++++|  +|
T Consensus       171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n---V~SASL~P~k~~fVaGg--ed  245 (334)
T KOG0278|consen  171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN---VESASLHPKKEFFVAGG--ED  245 (334)
T ss_pred             EeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc---cccccccCCCceEEecC--cc
Confidence            9999999999999999999998766533  34467999999999999988876544   55666677776777666  69


Q ss_pred             cEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          159 GSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       159 g~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      ..++.||..++...      |.+||.|+.|+|||..-|+||+||+ ||||.+..++.
T Consensus       246 ~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~  301 (334)
T KOG0278|consen  246 FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT  301 (334)
T ss_pred             eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence            99999999987643      3499999999999999999999998 69999876654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.3e-20  Score=150.56  Aligned_cols=273  Identities=12%  Similarity=0.139  Sum_probs=191.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEe------CCCCc--------EEEE---EeeCCEEEEEEccCCCEEEEEeCCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFD------SSTGR--------LCYE---RAVGAFSIVEMLYSSSLLAIVGAGE   68 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~------~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~   68 (337)
                      ...|++++|+|.|.+.|+|++.. ++|--      +..+.        .+..   .+.+.+.++++.+.+.+++..+   
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs---  108 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS---  108 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC---
Confidence            35699999999999999999854 56652      21111        1111   1235677777777777766544   


Q ss_pred             CCCCCCceEEEEECCCCCE--E---EEEE-cCCceeEEEEcC-----CeEEEEE---CCeEEEEECCCCeeeeeecCCCC
Q 019672           69 QPSLSPRRLCLFNTTTGTA--L---RELN-FLTSILAVRLNK-----KRLVIVL---REKTYIYDANTLAILDTIDTVPN  134 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~--~---~~~~-~~~~v~~i~~~~-----~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~  134 (337)
                          .|++|++.-+....+  .   .++. +.+.|.+++|-.     ..+++..   |-+|++-|-..++.++.+..+..
T Consensus       109 ----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg  184 (350)
T KOG0641|consen  109 ----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG  184 (350)
T ss_pred             ----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence                499999976543222  1   2333 456899998832     2233322   66888889999988888876543


Q ss_pred             CceEEEE-eeCCCccEEEEcCCCCccEEEEEEccCCccccc------------CceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672          135 LKGLCAF-SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------------APLAAIVLSSNGMYIATASEQGTIIRV  201 (337)
Q Consensus       135 ~~~~~~~-~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------------~~i~~~~~s~dg~~lat~s~dg~~i~v  201 (337)
                        -++++ +++  +.++++++  .|.+|++||++-...+..            +.|.++++.|.|++||+|-.|... -+
T Consensus       185 --hilalyswn--~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc-~l  257 (350)
T KOG0641|consen  185 --HILALYSWN--GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC-ML  257 (350)
T ss_pred             --cEEEEEEec--CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-EE
Confidence              24433 443  44566554  699999999986554321            789999999999999999999986 59


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP  281 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  281 (337)
                      ||++.++.++.|.  .|.+.|.|+.|||...   ||+++|.|..|++-|++..-...   -+.-.++..-.+...+.|.+
T Consensus       258 ydirg~r~iq~f~--phsadir~vrfsp~a~---yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  258 YDIRGGRMIQRFH--PHSADIRCVRFSPGAH---YLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             EEeeCCceeeeeC--CCccceeEEEeCCCce---EEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecC
Confidence            9999999999885  3567899999999998   99999999999999997643221   12222333334556677877


Q ss_pred             ccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          282 ADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ..              -..++.+.|.+...|.+.
T Consensus       330 ~d--------------~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  330 QD--------------FSFISSSADKTATLWALN  349 (350)
T ss_pred             cc--------------ceeeeccCcceEEEeccC
Confidence            65              357788889999888764

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=3.9e-21  Score=181.72  Aligned_cols=221  Identities=11%  Similarity=0.095  Sum_probs=156.0

Q ss_pred             CCCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCCCcE--------E--EEEeeCCEEEEEEccCCCEEEEEeCCCCC
Q 019672            3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL--------C--YERAVGAFSIVEMLYSSSLLAIVGAGEQP   70 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   70 (337)
                      ..+|..+|++++|+|+ +.+||+|+.|+ ++|||+.++..        +  +..+...+..+.+.+....++++++    
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS----  145 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG----  145 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe----
Confidence            3468899999999997 78999999887 59999875421        1  1222344566666655554443443    


Q ss_pred             CCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEE---eeC
Q 019672           71 SLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAF---SPS  144 (337)
Q Consensus        71 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~  144 (337)
                        .|++|+|||+++++.+..+.++..|.+++|++++-.++  . |+.|+|||+++++.+.++..|.+.....++   .++
T Consensus       146 --~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs  223 (568)
T PTZ00420        146 --FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG  223 (568)
T ss_pred             --CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence              59999999999999888888778899999987654433  3 889999999999988888766554332222   234


Q ss_pred             CCccEEEEcCCC--CccEEEEEEccCCc-cccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          145 LNACFLAVPAST--TKGSVLVYNVMELH-SHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       145 ~~~~~la~~~~~--~dg~v~i~d~~~~~-~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +++.+++++|.+  .+++|+|||+++.. .++.       +.+......++|.++++|+.|++ ||+|++..+. +..+.
T Consensus       224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~  301 (568)
T PTZ00420        224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVN  301 (568)
T ss_pred             CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeec
Confidence            677788887741  12489999998633 2221       33333444567999999999997 7999998764 44454


Q ss_pred             cCCcceeEEEEEeecCC
Q 019672          215 RGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg  231 (337)
                      ...+..++.+++|.|+.
T Consensus       302 ~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        302 EYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccccCCCccceEEcccc
Confidence            44445678899999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.1e-21  Score=164.21  Aligned_cols=224  Identities=16%  Similarity=0.166  Sum_probs=170.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      +..+.+||+++.|+.||+.+++|+.|+ +++||+.+++... ..+..++..+.+....++-.+++|     +.|++|+.|
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfW  142 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFW  142 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec-----ccccceeec
Confidence            457899999999999999987776655 6999999997643 344577888888777776677777     589999999


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      |++...++.++..++.+.++.+-...++|++ ++.|.+|+|+++.. .+.+..+-+ ..+-+++...++...|.++  .+
T Consensus       143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-~Q~R~va~f~d~~~~alGs--iE  219 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-WQTRCVACFQDKDGFALGS--IE  219 (347)
T ss_pred             ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-ceeeEEEEEecCCceEeee--ec
Confidence            9999999999999999999998877788877 88999999976632 223332221 1222333333444446655  58


Q ss_pred             cEEEEEEccCCccc-------cc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          159 GSVLVYNVMELHSH-------CE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       159 g~v~i~d~~~~~~~-------~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      |.+.|..+..+...       |+         .+|++|+|+|.-..|||++.||+ +..||-+...++++..  .+..+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkdar~kLk~s~--~~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDARTKLKTSE--THPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchhhhhhhccC--cCCCcc
Confidence            99999877654211       11         46899999999899999999998 5899998888877654  346789


Q ss_pred             EEEEeecCCCcccEEEEE
Q 019672          223 FSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~  240 (337)
                      ++.+|+.+|.   ++|-+
T Consensus       297 tcc~fn~~G~---ifaYA  311 (347)
T KOG0647|consen  297 TCCSFNRNGS---IFAYA  311 (347)
T ss_pred             ceeEecCCCC---EEEEE
Confidence            9999999999   66654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=1.3e-21  Score=168.02  Aligned_cols=267  Identities=16%  Similarity=0.099  Sum_probs=176.9

Q ss_pred             eEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEE-EccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVE-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      |.++...  ++.+.+|+.||. ++|+.. |+......+  +.+..+. +..+..-..+++++     .|.++++|.++.+
T Consensus       108 VSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-----~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  108 VSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-----MDQTLRLWKWNVG  179 (423)
T ss_pred             hhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEec-----CCceEEEEEecCc
Confidence            4455544  678999999996 999976 555444433  3444232 22222222344442     6999999998877


Q ss_pred             CEEEE-----EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCC-------------------------eeeeeecCC
Q 019672           86 TALRE-----LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTL-------------------------AILDTIDTV  132 (337)
Q Consensus        86 ~~~~~-----~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~-------------------------~~~~~~~~~  132 (337)
                      +...+     -.|...|-+|...++...+++   |.++.||+....                         .++.++..|
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            64422     145568999998776655544   999999993211                         112222322


Q ss_pred             CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                        ...+.++-+++ ...+.+++  .|.+|+.||+.++....+    .+++|+.++|..++||+||.|.. ||+||-+++.
T Consensus       260 --t~~Vs~V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~-irl~DPR~~~  333 (423)
T KOG0313|consen  260 --TEPVSSVVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH-IRLWDPRTGD  333 (423)
T ss_pred             --ccceeeEEEcC-CCceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc-eeecCCCCCC
Confidence              23455555554 34555555  799999999999876543    88999999999999999999986 7999998764


Q ss_pred             --e-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccce
Q 019672          209 --K-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  285 (337)
Q Consensus       209 --~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  285 (337)
                        . .+.| .+ |..-|.++.|+|...+  +|+++|.|+++++||++..+.+-                    ....++.
T Consensus       334 gs~v~~s~-~g-H~nwVssvkwsp~~~~--~~~S~S~D~t~klWDvRS~k~pl--------------------ydI~~h~  389 (423)
T KOG0313|consen  334 GSVVSQSL-IG-HKNWVSSVKWSPTNEF--QLVSGSYDNTVKLWDVRSTKAPL--------------------YDIAGHN  389 (423)
T ss_pred             CceeEEee-ec-chhhhhheecCCCCce--EEEEEecCCeEEEEEeccCCCcc--------------------eeeccCC
Confidence              2 2333 23 4557999999999985  89999999999999998765321                    1111111


Q ss_pred             eeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          286 VLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       286 ~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ..+..+.+ .++..|++|+.|.+++||.-.
T Consensus       390 DKvl~vdW-~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  390 DKVLSVDW-NEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ceEEEEec-cCCceEEeccCcceEEEeccc
Confidence            11111111 233689999999999999654

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=4.6e-21  Score=180.01  Aligned_cols=235  Identities=13%  Similarity=0.173  Sum_probs=161.4

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCc-------EEEEEee--CCEEEEEEccCC-CEEEEEeCCCCCC
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGR-------LCYERAV--GAFSIVEMLYSS-SLLAIVGAGEQPS   71 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~-------~~~~~~~--~~~~~~~~~~~~-~~~~~~~~g~~~~   71 (337)
                      .+|.++|++++|+| ++.+|++|+.|+ +++||+.++.       .+.....  ..+..+.+.+.. +.++..+      
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs------  145 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG------  145 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe------
Confidence            36788999999999 889999999887 5999987652       2333333  345556665544 3444333      


Q ss_pred             CCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           72 LSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                       .|++|+|||+++++.+..+. +...|.++.|++++-.+  +. |++|++||+++++.+..+..+.+.... ...+.+++
T Consensus       146 -~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~  223 (493)
T PTZ00421        146 -ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRK  223 (493)
T ss_pred             -CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCC
Confidence             59999999999999888876 44589999998775433  33 889999999999888887665443221 22334454


Q ss_pred             cEEEEcCC--CCccEEEEEEccCCccc-c-----c-CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCC
Q 019672          148 CFLAVPAS--TTKGSVLVYNVMELHSH-C-----E-APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       148 ~~la~~~~--~~dg~v~i~d~~~~~~~-~-----~-~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      ..+++.|.  ..|++|++||+++.... .     . ..+....|++++++|++|+ .||+ ||+||+.+++.+...... 
T Consensus       224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~-Iriwdl~~~~~~~~~~~~-  301 (493)
T PTZ00421        224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN-IRCFELMNERLTFCSSYS-  301 (493)
T ss_pred             CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe-EEEEEeeCCceEEEeecc-
Confidence            56665442  14799999999875422 1     1 4566778999999999887 4887 799999999877655322 


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ...++..++|.|.-.     +-...--..++|.+..
T Consensus       302 s~~~~~g~~~~pk~~-----~dv~~~Ei~r~~~l~~  332 (493)
T PTZ00421        302 SVEPHKGLCMMPKWS-----LDTRKCEIARFYALTY  332 (493)
T ss_pred             CCCCCcceEeccccc-----ccccceeeeEEEEecC
Confidence            234577888888532     1111112347777753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=1.6e-21  Score=186.90  Aligned_cols=239  Identities=15%  Similarity=0.161  Sum_probs=177.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCC----------C--------cEEEEEeeCCEEEEEEccCCCEEEEEe
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSST----------G--------RLCYERAVGAFSIVEMLYSSSLLAIVG   65 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (337)
                      .|.+.|+|+.|+|||++||+|++|.+ .||....          |        +.......|...+..+.|+++...+++
T Consensus        67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS  146 (942)
T KOG0973|consen   67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS  146 (942)
T ss_pred             cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence            57889999999999999999999996 8998662          0        122223334444445555544444444


Q ss_pred             CCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCC----Cce
Q 019672           66 AGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN----LKG  137 (337)
Q Consensus        66 ~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~----~~~  137 (337)
                      .+     .|++|.|||.++.+.+..+.. .+.|..+.|+|-+-++++   |++|+||++.+-...+.+..+.+    ...
T Consensus       147 ~s-----~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~  221 (942)
T KOG0973|consen  147 VS-----LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF  221 (942)
T ss_pred             ec-----ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence            43     599999999999988887764 458999999987766665   78999999887777777654432    233


Q ss_pred             EEEEeeCCCccEEEEcCCCC--ccEEEEEEccCCc-----ccccCceEEEEeCCC-----CC------------EEEEEe
Q 019672          138 LCAFSPSLNACFLAVPASTT--KGSVLVYNVMELH-----SHCEAPLAAIVLSSN-----GM------------YIATAS  193 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~--dg~v~i~d~~~~~-----~~~~~~i~~~~~s~d-----g~------------~lat~s  193 (337)
                      ..-++++||+++|+++.+..  -..+.|.+-.+.+     ..|.+++.+++|+|-     .+            .+|+||
T Consensus       222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS  301 (942)
T KOG0973|consen  222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS  301 (942)
T ss_pred             eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence            45778899999999875321  3457776554433     346799999999981     12            688999


Q ss_pred             CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          194 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       194 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .|++ |-||.....+.+.... ......|..|+|||||-   .|.++|.||+|.++..+.
T Consensus       302 qDrS-lSVW~T~~~RPl~vi~-~lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  302 QDRS-LSVWNTALPRPLFVIH-NLFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEE  356 (942)
T ss_pred             CCcc-EEEEecCCCCchhhhh-hhhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcch
Confidence            9998 5899998877765542 22345699999999999   999999999999999865

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.6e-20  Score=154.30  Aligned_cols=230  Identities=16%  Similarity=0.252  Sum_probs=183.0

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEc-CCceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDN-SGFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg-~~la~g~-~~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ++.+.|-.+.|+|.. .+|++++ ++.+++||...++.+..... ++-..+.+.++.+.++.+.       .|..|.+.|
T Consensus        62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-------kdD~it~id  134 (313)
T KOG1407|consen   62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-------KDDRITFID  134 (313)
T ss_pred             CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-------CcccEEEEE
Confidence            566678888888755 4566554 55689999999988776543 3444556777777776654       488999999


Q ss_pred             CCCCCEEEEEEcCCceeEEEEc-CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           82 TTTGTALRELNFLTSILAVRLN-KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      .++.+...+.++.-.+..+.|+ ++.+++.+  -|.|.|......+++..+..|+  .+..|+.++|++.++|+++  .|
T Consensus       135 ~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~Gs--AD  210 (313)
T KOG1407|consen  135 ARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGS--AD  210 (313)
T ss_pred             ecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeecc--cc
Confidence            9999999888888888888875 44555555  4799999999999999987654  5778999999999999998  48


Q ss_pred             cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      -.+.+||+...-..     +.-||..+.||.||++||+||+|. .|-|-++++|..+.++.   ..++.+.|+|+|... 
T Consensus       211 AlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh-~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~-  285 (313)
T KOG1407|consen  211 ALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH-FIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP-  285 (313)
T ss_pred             ceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc-eEEeEecccCCeEEEee---ccCCceeEEecCCCc-
Confidence            99999999876543     238999999999999999999997 47999999999998884   356789999999998 


Q ss_pred             ccEEEEEeCC---------CcEEEEecC
Q 019672          234 QDILVATSSS---------GSLHVFSPG  252 (337)
Q Consensus       234 ~~~las~s~d---------g~v~iw~l~  252 (337)
                        +||-+.+|         |+|+||-+.
T Consensus       286 --LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  286 --LLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             --eeeEEecCCCCccccccceeEEecCC
Confidence              88887766         567776553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.2e-20  Score=156.35  Aligned_cols=231  Identities=13%  Similarity=0.177  Sum_probs=166.1

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCC-CcEEEE---EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSST-GRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      +++...|.+++|||. ..++++|+-|+ +|+|+++. +...-.   ...+++..+++.-+++.++..+       .|+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-------~Dk~~   96 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-------CDKQA   96 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------cCCce
Confidence            467788999999994 45566777665 79999876 333221   1235677777777776655443       59999


Q ss_pred             EEEECCCCCEEEEEEcCCceeEEEEcCCeE--EEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           78 CLFNTTTGTALRELNFLTSILAVRLNKKRL--VIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      ++||+.+++...--.|..+|..+.|-+...  +++  + |.+|+.||.+...++.++..+   ..+++...-.+  ++++
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP---eRvYa~Dv~~p--m~vV  171 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP---ERVYAADVLYP--MAVV  171 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc---ceeeehhccCc--eeEE
Confidence            999999998766667778999999855443  333  3 999999999999888888764   34555554322  4444


Q ss_pred             cCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC--ceeEeeccCC------
Q 019672          153 PASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA--TKSYSFRRGT------  217 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~--~~~~~~~~~~------  217 (337)
                      +-  .+..|.+|+++++....       +..++||+.-+|....|.||-+|++ -|..+..+  +.-..|+-+.      
T Consensus       172 at--a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv-~iq~id~~~~~~nFtFkCHR~~~~~~  248 (347)
T KOG0647|consen  172 AT--AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV-AIQYIDDPNPKDNFTFKCHRSTNSVN  248 (347)
T ss_pred             Ee--cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE-EEEecCCCCccCceeEEEeccCCCCC
Confidence            43  36789999997654322       1668999999998888999999985 78888876  3223332111      


Q ss_pred             c-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          218 Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       218 ~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      . --.|++|+|+|.-.   .|++.+.||+..+||-+
T Consensus       249 ~~VYaVNsi~FhP~hg---tlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  249 DDVYAVNSIAFHPVHG---TLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             CceEEecceEeecccc---eEEEecCCceEEEecch
Confidence            0 12488999999877   99999999999999954

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6.8e-21  Score=159.82  Aligned_cols=223  Identities=16%  Similarity=0.174  Sum_probs=163.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      -++.||++++|.++.+ +++|+-+| ++++|+.++....- .+..++.+++..+-.+.++  +|+     +|++|++||.
T Consensus        52 ~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vI--sgs-----WD~~ik~wD~  123 (323)
T KOG1036|consen   52 KHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVI--SGS-----WDKTIKFWDP  123 (323)
T ss_pred             ecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEE--Ecc-----cCccEEEEec
Confidence            3678999999999765 55555555 69999998865433 3345667776665555543  342     7999999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.......+.....|.++....+.++|++ +..+.+||+++.....+.+...-...+-+++..|++.-.++++  .||.|
T Consensus       124 R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS--ieGRV  201 (323)
T KOG1036|consen  124 RNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS--IEGRV  201 (323)
T ss_pred             cccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe--ecceE
Confidence            98777777877789999999999999976 8899999999886655443322222233444444444445554  58998


Q ss_pred             EEEEccCCccc---------cc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          162 LVYNVMELHSH---------CE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       162 ~i~d~~~~~~~---------~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      .+=.+......         |.         .||++++|+|--..||||+.||. |.+||+.+.+.+.+|.+-  +..|-
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~rKrl~q~~~~--~~SI~  278 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNRKRLKQLAKY--ETSIS  278 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcchhhhhhccCC--CCceE
Confidence            88555443111         11         78999999999889999999996 579999999998888532  45699


Q ss_pred             EEEeecCCCcccEEEEEeCC
Q 019672          224 SLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~d  243 (337)
                      +++|+.||.   .||.++.-
T Consensus       279 slsfs~dG~---~LAia~sy  295 (323)
T KOG1036|consen  279 SLSFSMDGS---LLAIASSY  295 (323)
T ss_pred             EEEeccCCC---eEEEEech
Confidence            999999999   99998763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=7.7e-21  Score=155.60  Aligned_cols=270  Identities=12%  Similarity=0.147  Sum_probs=175.0

Q ss_pred             CeEEEEEcC--CCCE-EEEEcCCc------eEEEeCCCCcEEE---EEe-eCCEEEEEEccCC-CEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQ--DNSG-FALSTKDG------FKIFDSSTGRLCY---ERA-VGAFSIVEMLYSS-SLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~--dg~~-la~g~~~g------~~vw~~~~~~~~~---~~~-~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d   74 (337)
                      .=++++|||  ++++ +|++..-|      +.|-++...+-+.   ... ..+..-+++..+. +.++.++|       |
T Consensus        10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------D   82 (311)
T KOG0277|consen   10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG-------D   82 (311)
T ss_pred             ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec-------C
Confidence            346889998  4443 33333322      3455664222221   221 1334445555544 34444444       9


Q ss_pred             ceEEEEECCC-CCEEEEEE-cCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           75 RRLCLFNTTT-GTALRELN-FLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        75 ~~v~iwd~~~-~~~~~~~~-~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      |+++|||+.. ..++..++ |..+|.++.++.   +.+++.+ |++|++|+..-++.+.++..+.+...-..++|+.. .
T Consensus        83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-n  161 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP-N  161 (311)
T ss_pred             ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC-C
Confidence            9999999643 34555553 556899999864   2334444 99999999988888999887655444445555433 3


Q ss_pred             EEEEcCCCCccEEEEEEccCCc-----ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCccee
Q 019672          149 FLAVPASTTKGSVLVYNVMELH-----SHCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPST  221 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~-----~~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~  221 (337)
                      ++++++  .||++++||++..-     ..|...|.|+.|+. +.+.||||+.|+. ||+||+++-+ .+.++.  .|.-.
T Consensus       162 lfas~S--gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~--gh~~A  236 (311)
T KOG0277|consen  162 LFASAS--GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELN--GHGLA  236 (311)
T ss_pred             eEEEcc--CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeec--CCceE
Confidence            667776  49999999987542     23557899999997 6678999999986 7999998754 455552  34567


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC-CCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR-GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      |..|.|||...  +.||++|-|-|++|||...+..... ..+.+.|.       +.--|++-             +..++
T Consensus       237 VRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv-------~g~Dws~~-------------~~~~v  294 (311)
T KOG0277|consen  237 VRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIETVDHHTEFV-------CGLDWSLF-------------DPGQV  294 (311)
T ss_pred             EEEEecCcchh--hHhhhccccceEEecccccchhhhhhhhccceEE-------eccccccc-------------cCcee
Confidence            99999999877  5999999999999999875432111 00111111       11123321             23567


Q ss_pred             EEEEeCCcEEEEE
Q 019672          301 SVITYNGYFVEYI  313 (337)
Q Consensus       301 ~~~~~dg~~~~~~  313 (337)
                      +..+=|+.+++|+
T Consensus       295 As~gWDe~l~Vw~  307 (311)
T KOG0277|consen  295 ASTGWDELLYVWN  307 (311)
T ss_pred             eecccccceeeec
Confidence            7777799999996

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1e-20  Score=166.30  Aligned_cols=236  Identities=16%  Similarity=0.214  Sum_probs=177.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE-E--EE-----------------eeCCEEEEEEccCCCEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-Y--ER-----------------AVGAFSIVEMLYSSSLLAI   63 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~-~--~~-----------------~~~~~~~~~~~~~~~~~~~   63 (337)
                      .|.-+|+|+.++||+++...++.++ +.-|++.+++.. +  ..                 +...+..+++..++.++++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            4567899999999999988888877 488998888633 1  11                 1122334555556666655


Q ss_pred             EeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEc--CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           64 VGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        64 ~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~--~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                      .+       .|+.|.|||.++.+.+..+..+ ..|.++.|-  .+.++.+. |.++++|++.....+.++..|  +.++.
T Consensus       220 gg-------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--qd~v~  290 (479)
T KOG0299|consen  220 GG-------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--QDGVL  290 (479)
T ss_pred             cC-------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC--cccee
Confidence            44       4899999999999999887655 489888883  44555555 999999999988777777655  44677


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      ++..-.....+.+++  .|.++++|++.....+    +.+.+-|++|-.+ ..+++||.+|. |.+|++.+.+.+...+.
T Consensus       291 ~IdaL~reR~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~~  366 (479)
T KOG0299|consen  291 GIDALSRERCVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSRL  366 (479)
T ss_pred             eechhcccceEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEeec
Confidence            777655555555555  4999999999654332    3378999999766 57899999998 68999999998887654


Q ss_pred             CCcc--e--------eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          216 GTYP--S--------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       216 ~~~~--~--------~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .|..  .        -|++|+..|...   ++|+||.+|.|++|.+..+..
T Consensus       367 AHgv~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  367 AHGVIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             cccccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCCcc
Confidence            4321  1        388999999887   999999999999999987643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=1.4e-21  Score=164.91  Aligned_cols=242  Identities=12%  Similarity=0.116  Sum_probs=187.7

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE---------cCCceeEEEEcCCeEEEEE---CCe
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN---------FLTSILAVRLNKKRLVIVL---REK  114 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~v~~i~~~~~~~~v~~---d~~  114 (337)
                      ..+.+..+.+++++++..+       -|+-|.+||..+|+....+.         +..+|.++.|+.+.-++++   ||+
T Consensus       214 Sh~EcA~FSPDgqyLvsgS-------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk  286 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGS-------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK  286 (508)
T ss_pred             cchhheeeCCCCceEeecc-------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence            3455666777777765443       59999999999998655432         3568999999988766655   999


Q ss_pred             EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEE
Q 019672          115 TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYI  189 (337)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~l  189 (337)
                      |++|.+.+++.++.++. .+..++++++++.|+..+.+++  .|.+++|.-+++++.+.     .+.|+...|.+||..+
T Consensus       287 IKvWri~tG~ClRrFdr-AHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~i  363 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDR-AHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHI  363 (508)
T ss_pred             EEEEEEecchHHHHhhh-hhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceEEcCCCCeE
Confidence            99999999999999863 4567899999999999999888  49999999999998764     4889999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc
Q 019672          190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS  269 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~  269 (337)
                      +++|.||+ |+||+.++++++.+|+......+|+++-.-|.+.  +.++++...++|.|-++..+.-+.       +.+ 
T Consensus       364 isaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp--eh~iVCNrsntv~imn~qGQvVrs-------fsS-  432 (508)
T KOG0275|consen  364 ISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP--EHFIVCNRSNTVYIMNMQGQVVRS-------FSS-  432 (508)
T ss_pred             EEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCC--ceEEEEcCCCeEEEEeccceEEee-------ecc-
Confidence            99999998 6999999999999998776667899998888876  689999999999999987543211       000 


Q ss_pred             cccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          270 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       270 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                        .+.       .++..+..  ...|+++-++++++|+.++.|+.-.-+-+
T Consensus       433 --GkR-------EgGdFi~~--~lSpkGewiYcigED~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  433 --GKR-------EGGDFINA--ILSPKGEWIYCIGEDGVLYCFSVLSGKLE  472 (508)
T ss_pred             --CCc-------cCCceEEE--EecCCCcEEEEEccCcEEEEEEeecCcee
Confidence              000       00000001  12556789999999999999987554433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.5e-19  Score=145.75  Aligned_cols=237  Identities=12%  Similarity=0.147  Sum_probs=171.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEE--eCCCCc-----EEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIF--DSSTGR-----LCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSP   74 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw--~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d   74 (337)
                      -+++.|+|.+|+|+|+++|+|+++. +++.  |.++..     +.+..+.+.+.-+++.-++  ...++.++|    ..|
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g----agd  162 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG----AGD  162 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC----CCc
Confidence            3678899999999999999999986 4554  544432     3344444555555554333  333344443    248


Q ss_pred             ceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCCC
Q 019672           75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSLN  146 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  146 (337)
                      .+|.+-|..+|+....+..+ +.|.++.--.+-+++.+  |.+|++||++-...++++....+     ...+.+++.+|.
T Consensus       163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence            89999999999998888755 47887754333344433  88999999998877777754332     244678888899


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee---ccCCc
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---RRGTY  218 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~---~~~~~  218 (337)
                      +.+|+++-  .|....+||++.++.++     ...|.|+.|||...++.|+|.|-. ||+=|++. .+.+++   -.+.|
T Consensus       243 grll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlqg-dla~el~~~vv~eh  318 (350)
T KOG0641|consen  243 GRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQG-DLAHELPIMVVAEH  318 (350)
T ss_pred             cceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeeccc-chhhcCceEEEEec
Confidence            98998876  68999999999888764     388999999999999999999986 79999873 222222   12233


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ...+-.+.|+|..-   -+++.|.|.++.+|-+.
T Consensus       319 kdk~i~~rwh~~d~---sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  319 KDKAIQCRWHPQDF---SFISSSADKTATLWALN  349 (350)
T ss_pred             cCceEEEEecCccc---eeeeccCcceEEEeccC
Confidence            44555679999887   78899999999999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.4e-20  Score=172.00  Aligned_cols=234  Identities=11%  Similarity=0.136  Sum_probs=179.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC-cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .|..+.+.+.|.|+|+.+.+++.++ +++|+...- +.--.....+..+..+...++.++..+       .+++|.+|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s-------~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGS-------EQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEee-------ccceEEEeeC
Confidence            4677899999999999998888877 599986544 211111113445556666677655544       4899999998


Q ss_pred             CCCCEEEEE-EcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           83 TTGTALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        83 ~~~~~~~~~-~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ..++.-.-+ .+.-++..++++.+  .++.++ |-.|++-++.+......++.+..  .+.+++.+|++.+||+...  |
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvss~--d  159 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVSSC--D  159 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEEec--C
Confidence            777643221 23346666667665  444445 55899999988877777776544  5788999999999999884  9


Q ss_pred             cEEEEEEccCCccccc-------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          159 GSVLVYNVMELHSHCE-------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       159 g~v~i~d~~~~~~~~~-------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      |.|++||++++...++             ..+..++|+|+|..+|..+.|+. |++++..+.+..+.++..++.+.+.++
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEEE
Confidence            9999999998776532             56788999999777888888887 689999999999999776666669999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .|||+|+   |||+++.||.|-|||+++
T Consensus       239 ~wsPnG~---YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  239 QWSPNGK---YIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEcCCCc---EEeeeccCCcEEEEeccc
Confidence            9999999   999999999999999987

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=9.1e-21  Score=168.20  Aligned_cols=270  Identities=14%  Similarity=0.167  Sum_probs=194.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc---EEEE---Eee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYE---RAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~---~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      +|.+-|..+.++...+++.+|+..+++|||+..-.   .+..   .+. .-+..+.+..+++.++ ++|      .-.+|
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLi-vGG------eastl  489 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLI-VGG------EASTL  489 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEE-ecc------cccee
Confidence            46667888999999999999999999999975321   1111   111 2234445555565554 444      36799


Q ss_pred             EEEECCCCCEEEE--EEcCC-ceeEEEEcCCeEE---EEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           78 CLFNTTTGTALRE--LNFLT-SILAVRLNKKRLV---IVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        78 ~iwd~~~~~~~~~--~~~~~-~v~~i~~~~~~~~---v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      .|||+....+...  +.... ...+++.+++..+   +++||.|.|||+.+..+++++..+.+  +..|+..++++..|-
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD--GascIdis~dGtklW  567 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISKDGTKLW  567 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC--CceeEEecCCCceee
Confidence            9999987654433  33222 4566777777533   34599999999999999999987654  677788888888999


Q ss_pred             EcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          152 VPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      ++|  -|++|+-||++.++.+.+    +.|.++...|++.+||.|-+.+. +.|-.....++ +.+  +.|..-|.+|.|
T Consensus       568 TGG--lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yql--hlheScVLSlKF  641 (705)
T KOG0639|consen  568 TGG--LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQL--HLHESCVLSLKF  641 (705)
T ss_pred             cCC--CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eee--cccccEEEEEEe
Confidence            998  599999999999887654    88999999999999999999987 46766654443 333  445677999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      ++-|+   ++++.+.|+.+..|....+...-..++.+        .    +-          .+....++++|++|+.|.
T Consensus       642 a~cGk---wfvStGkDnlLnawrtPyGasiFqskE~S--------s----Vl----------sCDIS~ddkyIVTGSGdk  696 (705)
T KOG0639|consen  642 AYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESS--------S----VL----------SCDISFDDKYIVTGSGDK  696 (705)
T ss_pred             cccCc---eeeecCchhhhhhccCccccceeeccccC--------c----ce----------eeeeccCceEEEecCCCc
Confidence            99999   99999999999999876554311100000        0    11          111244568999999999


Q ss_pred             cEEEEEE
Q 019672          308 YFVEYIF  314 (337)
Q Consensus       308 ~~~~~~~  314 (337)
                      +-.+|.+
T Consensus       697 kATVYeV  703 (705)
T KOG0639|consen  697 KATVYEV  703 (705)
T ss_pred             ceEEEEE
Confidence            9888876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.7e-20  Score=164.97  Aligned_cols=233  Identities=15%  Similarity=0.234  Sum_probs=182.0

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcCCce-EEEeCCCCcEEE-----EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            7 SYPVFFVSFNQDNS-GFALSTKDGF-KIFDSSTGRLCY-----ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~-~la~g~~~g~-~vw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +.||.++.|.|+|+ .+++++...+ ..||+++.++..     ......+...+++++++++++.|.       .+.|.|
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-------~G~I~l  329 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-------NGHIHL  329 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-------CceEEe
Confidence            56899999999998 6777777765 999999886532     222345566788899999988875       689999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ....+++.+.+++.++.|.++.|+.+.  ++++. +|.|.+||++....++.+..... ..-..++.+.++.++|+++  
T Consensus       330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS--  406 (514)
T KOG2055|consen  330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGS--  406 (514)
T ss_pred             ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEecc--
Confidence            999999999999999999999996543  33333 88999999999988888864333 2334666667778999987  


Q ss_pred             CccEEEEEEccCCc------ccc-----cCceEEEEeCCCCCEEEEEeC--CCcEEEEEEcCCCceeEeeccCC-cceeE
Q 019672          157 TKGSVLVYNVMELH------SHC-----EAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGT-YPSTI  222 (337)
Q Consensus       157 ~dg~v~i~d~~~~~------~~~-----~~~i~~~~~s~dg~~lat~s~--dg~~i~vwd~~~~~~~~~~~~~~-~~~~i  222 (337)
                      ..|.|.|||..+-.      .+.     +..|+++.|+||++.||.+|.  +.. +|+-.+.+......|.... .-..|
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence            58999999976432      111     178999999999999998875  334 6999998887766664321 12359


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +||+|||.|.   +||.|-.+|.|++|.|..
T Consensus       486 tc~aFSP~sG---~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  486 TCMAFSPNSG---YLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             EEEEecCCCc---eEEeecCCCceeeEeecc
Confidence            9999999998   999999999999999853

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=7.5e-19  Score=156.07  Aligned_cols=231  Identities=13%  Similarity=0.103  Sum_probs=162.0

Q ss_pred             CeEEEEEcCCCCEE-EEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            9 PVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~l-a~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .+.+++|+|||+.+ +++..++ +++||..+++.+..... .....+.+.++.+.+++.+.      .++.|++||++++
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~l~~~d~~~~  105 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE------DDNLVTVIDIETR  105 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC------CCCeEEEEECCCC
Confidence            46789999999976 5555554 79999998877654432 23444556566665544443      4789999999998


Q ss_pred             CEEEEEEcCCceeEEEEcCCeEE--EEE-C-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           86 TALRELNFLTSILAVRLNKKRLV--IVL-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~--v~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.+..+.....+.++.+++++..  ++. + ..+.+||..+++....+.....   ...+++++++.++++++. .++.|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~v  181 (300)
T TIGR03866       106 KVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE-IGGTV  181 (300)
T ss_pred             eEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC-CCCEE
Confidence            88888776666788889876533  333 3 3577889988776655433222   234556677777765553 48999


Q ss_pred             EEEEccCCccccc------------CceEEEEeCCCCCEEEEE-eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          162 LVYNVMELHSHCE------------APLAAIVLSSNGMYIATA-SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       162 ~i~d~~~~~~~~~------------~~i~~~~~s~dg~~lat~-s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .+||+.+++....            .....++|+|+|++++.+ +.+++ +.+||+++++.+..+..+   ..+.+++|+
T Consensus       182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~---~~~~~~~~~  257 (300)
T TIGR03866       182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLVG---QRVWQLAFT  257 (300)
T ss_pred             EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEeC---CCcceEEEC
Confidence            9999988764321            123468899999986554 34455 689999998877655322   358899999


Q ss_pred             cCCCcccEEEEE-eCCCcEEEEecCCCcc
Q 019672          229 QSMQFQDILVAT-SSSGSLHVFSPGFAIN  256 (337)
Q Consensus       229 ~dg~~~~~las~-s~dg~v~iw~l~~~~~  256 (337)
                      |+|+   +|+++ +.+|+|+|||+++.+.
T Consensus       258 ~~g~---~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       258 PDEK---YLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence            9999   88876 5689999999987654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.87  E-value=3.3e-20  Score=162.02  Aligned_cols=194  Identities=14%  Similarity=0.232  Sum_probs=155.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCC
Q 019672           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTL  123 (337)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~  123 (337)
                      ++..+...+..+. ++.+|      .|.++.++|..+++.+..++.+. .|+.+.++++...+..   |..|+||.....
T Consensus       221 gi~ald~~~s~~~-ilTGG------~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  221 GITALDIIPSSSK-ILTGG------EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             CeeEEeecCCCCc-ceecC------CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            3444444444333 34444      58999999999999998888776 7999999988766554   779999998766


Q ss_pred             eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCC
Q 019672          124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      .....+..+..  .+..++.+|.+.|+..++  .||+..+.|++++.....       -.+++.+|+|||..|++|+.||
T Consensus       294 s~~~~~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~  369 (506)
T KOG0289|consen  294 SEPTSSRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG  369 (506)
T ss_pred             cCccccccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc
Confidence            54444444443  566777788888999888  599999999999886532       3489999999999999999999


Q ss_pred             cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      . ++|||+.++..+..|. + |.++|.+++|+.+|.   |||++.+|+.|++|||++.++.+
T Consensus       370 ~-vkiwdlks~~~~a~Fp-g-ht~~vk~i~FsENGY---~Lat~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  370 V-VKIWDLKSQTNVAKFP-G-HTGPVKAISFSENGY---WLATAADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             e-EEEEEcCCccccccCC-C-CCCceeEEEeccCce---EEEEEecCCeEEEEEehhhcccc
Confidence            6 7999999999888885 3 678999999999999   99999999999999999877644

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3e-19  Score=150.64  Aligned_cols=238  Identities=17%  Similarity=0.198  Sum_probs=158.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEE------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      +.+|++.|++++|+.||++||+++.|+. +||++..+.+.      .......-..+.+.++..-+++...      .-+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~------~g~  155 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK------RGN  155 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc------cCC
Confidence            4588999999999999999999998875 99998876432      1122233344566666554433322      247


Q ss_pred             eEEEEECCCCC---EEE------EEEc----CCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           76 RLCLFNTTTGT---ALR------ELNF----LTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        76 ~v~iwd~~~~~---~~~------~~~~----~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                      ++++|-+...+   ...      ...+    ..++.++-...+  .++.+. |.+|.+|+++ |+.+..+.+.......+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            88888764321   111      1111    224555555444  344444 8899999998 88898887654433445


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCcc-------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHS-------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-  205 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-  205 (337)
                      +++  |++.++|++|.  .-.|++|.+--++.             .|++.|..++|||+.++++|.|.||+ +||||+. 
T Consensus       235 avS--P~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdV  309 (420)
T KOG2096|consen  235 AVS--PDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDV  309 (420)
T ss_pred             eeC--CCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccc
Confidence            554  66789999996  56699998743221             24589999999999999999999998 6999984 


Q ss_pred             ---CCceeEeeccCC-----cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          206 ---EATKSYSFRRGT-----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       206 ---~~~~~~~~~~~~-----~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                         .++..+.++.+.     ..+.-..|+.||.|+   .||.+ ...++++|..++++.
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---~lA~s-~gs~l~~~~se~g~~  364 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---SLAVS-FGSDLKVFASEDGKD  364 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---EEEee-cCCceEEEEcccCcc
Confidence               222222232221     112234799999998   66654 455899999877554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=153.06  Aligned_cols=270  Identities=13%  Similarity=0.168  Sum_probs=184.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      -+|+.||+.|.+||+|+.+| +-|||..+...  ++..+.+++..+++..++..+...+       .|+.+++||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-------~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-------RDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-------CCceeEEEeccCCC
Confidence            67999999999999999988 69999999865  3445556777777777777766655       49999999999999


Q ss_pred             EEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCCCCCce--EE--EEeeCCCccEEEEcCCCCc
Q 019672           87 ALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNLKG--LC--AFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~la~~~~~~d  158 (337)
                      ++.++.++++|....|+|.  ..+++.  +..-.+-++.+++  +.+-.......  ..  ...+++.+.++.++.+  .
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts--K  174 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS--K  174 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecC--c
Confidence            9999999999999999763  233433  5656666666532  22211111111  11  1135667789988874  8


Q ss_pred             cEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-------ce--eEeeccCCcceeEE
Q 019672          159 GSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-------TK--SYSFRRGTYPSTIF  223 (337)
Q Consensus       159 g~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-------~~--~~~~~~~~~~~~i~  223 (337)
                      |.+.++|..+.+.++.      ..|..+.|+..|++|+.-+.|. +||.++++.-       +.  .+++..-..+.+-.
T Consensus       175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk  253 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK  253 (405)
T ss_pred             ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence            9999999999877643      6788999999999999999997 5899998621       11  12221111123356


Q ss_pred             EEEeecCCCcccEEEEEeCC-CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672          224 SLSFGQSMQFQDILVATSSS-GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  302 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~d-g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~  302 (337)
                      +++||.||.   |+++|+.. -.++||.-..+.-.+-..      |........--|.+.+              . +++
T Consensus       254 ~ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsLVKILh------G~kgE~l~DV~whp~r--------------p-~i~  309 (405)
T KOG1273|consen  254 KCCFSGDGE---YVCAGSARAHALYIWEKSIGSLVKILH------GTKGEELLDVNWHPVR--------------P-IIA  309 (405)
T ss_pred             heeecCCcc---EEEeccccceeEEEEecCCcceeeeec------CCchhheeecccccce--------------e-eee
Confidence            889999999   88888755 459999866554432110      0000011112366654              2 333


Q ss_pred             EEeCCcEEEEEEe
Q 019672          303 ITYNGYFVEYIFS  315 (337)
Q Consensus       303 ~~~dg~~~~~~~~  315 (337)
                      .-..|.+++|...
T Consensus       310 si~sg~v~iw~~~  322 (405)
T KOG1273|consen  310 SIASGVVYIWAVV  322 (405)
T ss_pred             eccCCceEEEEee
Confidence            4489999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.8e-20  Score=173.49  Aligned_cols=199  Identities=10%  Similarity=0.083  Sum_probs=145.8

Q ss_pred             CCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCc
Q 019672           94 LTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        94 ~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ...|++|.|+.+++++..  |.+|++|.+...+.+..|.   +...++|+.++|. ..++++++  -||.|+||++...+
T Consensus       369 t~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~---HndfVTcVaFnPvDDryFiSGS--LD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  369 TADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS---HNDFVTCVAFNPVDDRYFISGS--LDGKVRLWSISDKK  443 (712)
T ss_pred             chhheecccccCCeeEeccccccEEeecCCCcceeeEEe---cCCeeEEEEecccCCCcEeecc--cccceEEeecCcCe
Confidence            348999999988877765  9999999999989998885   3446788888774 44555555  69999999998777


Q ss_pred             ccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc------ceeEEEEEeecCCCcccEEEEE
Q 019672          171 SHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY------PSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       171 ~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~------~~~i~~l~fs~dg~~~~~las~  240 (337)
                      .+.    +.-|++++|.|||+..+.|+-+|. +++|++...+....+.-..+      ...|+.+.|.|...  +.++++
T Consensus       444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~--~~vLVT  520 (712)
T KOG0283|consen  444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP--DEVLVT  520 (712)
T ss_pred             eEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC--CeEEEe
Confidence            653    278999999999999999999998 58999988776544321111      12699999998765  479999


Q ss_pred             eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          241 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       241 s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      ++|..|+|||+.......+      |- ++...     -+       +....+..++++|++++.|-.|++|+++....
T Consensus       521 SnDSrIRI~d~~~~~lv~K------fK-G~~n~-----~S-------Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  521 SNDSRIRIYDGRDKDLVHK------FK-GFRNT-----SS-------QISASFSSDGKHIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             cCCCceEEEeccchhhhhh------hc-ccccC-----Cc-------ceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence            9999999999854332211      00 01000     00       01112345779999999999999999866543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.86  E-value=2.3e-18  Score=152.99  Aligned_cols=264  Identities=11%  Similarity=0.046  Sum_probs=175.4

Q ss_pred             CEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      ..+++++.++ +++||+.+++.+..... .....+.+.++...+++++.      .++.|++||..+++.+..+.....+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCc
Confidence            4677777666 69999998887665543 22334556666665544444      4889999999999888777655556


Q ss_pred             eEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc
Q 019672           98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (337)
Q Consensus        98 ~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~  173 (337)
                      ..+.++++.  ++++.  ++.+++||+++.+.+..+.....   ..++.++|++.+++++.. ....+.+||..+.+...
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEE
Confidence            677787653  44443  67999999998877776653322   234566778888887763 23457788988765432


Q ss_pred             c----CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCC---c--ceeEEEEEeecCCCcccEEE-EEeC
Q 019672          174 E----APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT---Y--PSTIFSLSFGQSMQFQDILV-ATSS  242 (337)
Q Consensus       174 ~----~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~---~--~~~i~~l~fs~dg~~~~~la-s~s~  242 (337)
                      .    ..+.+++|+|+|++|+.++ .+|. |++||+++++.+.++....   .  ......++|+|+++   +++ +.+.
T Consensus       152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~---~~~~~~~~  227 (300)
T TIGR03866       152 NVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK---TAFVALGP  227 (300)
T ss_pred             EEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCC---EEEEEcCC
Confidence            2    4567899999999886554 5776 6999999998776653211   0  11235689999999   654 4456


Q ss_pred             CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE-eCCcEEEEEEecCCC
Q 019672          243 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINNC  319 (337)
Q Consensus       243 dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~~~~~~~~~~~~  319 (337)
                      ++.|++||+++.+....       .  ....   ..+          .+.+.+++++|+++. .+|.+.+|+++..+.
T Consensus       228 ~~~i~v~d~~~~~~~~~-------~--~~~~---~~~----------~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       228 ANRVAVVDAKTYEVLDY-------L--LVGQ---RVW----------QLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCeEEEEECCCCcEEEE-------E--EeCC---Ccc----------eEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            77899999875432110       0  0000   011          122355668888764 599999999876554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=8.3e-19  Score=147.91  Aligned_cols=235  Identities=10%  Similarity=0.085  Sum_probs=164.0

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEE--cCCeEEEEE---CCeEEEEEC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL--NKKRLVIVL---REKTYIYDA  120 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~--~~~~~~v~~---d~~i~i~d~  120 (337)
                      +.+..+++..++..++.++       .|.+++|||..++++++++.... -+-.+.|  +.+.++.++   |.+|+..++
T Consensus        15 ~~i~sl~fs~~G~~litss-------~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSS-------EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             CceeEEEecCCCCEEEEec-------CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            3444455544555554433       58899999999999999887654 3333444  333333333   779999999


Q ss_pred             CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc---cCceEEEEeCCCCCEEEEEeCCCc
Q 019672          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC---EAPLAAIVLSSNGMYIATASEQGT  197 (337)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~---~~~i~~~~~s~dg~~lat~s~dg~  197 (337)
                      .+.+.++.+..|..  .+..++.+|-+..+.+++  .|++|++||++..+...   -..-..+||+|+|-.+|+|.... 
T Consensus        88 ~dNkylRYF~GH~~--~V~sL~~sP~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~-  162 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKK--RVNSLSVSPKDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE-  162 (311)
T ss_pred             ecCceEEEcCCCCc--eEEEEEecCCCCeEEecc--cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC-
Confidence            99999999987655  566777777667777777  59999999999665432   25556789999999999998876 


Q ss_pred             EEEEEEcCCCc--eeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc-ccccc
Q 019672          198 IIRVFLVSEAT--KSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG-SILPE  273 (337)
Q Consensus       198 ~i~vwd~~~~~--~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~-~~~~~  273 (337)
                      .|++||++.-.  ...+|... ....+.+.|.|||||+   +|+.+...+.+++.|--.+.....   -+.+.. ..+| 
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK---~iLlsT~~s~~~~lDAf~G~~~~t---fs~~~~~~~~~-  235 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK---SILLSTNASFIYLLDAFDGTVKST---FSGYPNAGNLP-  235 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC---EEEEEeCCCcEEEEEccCCcEeee---EeeccCCCCcc-
Confidence            48999998642  33344332 2345789999999999   899999999999999655442110   000000 0011 


Q ss_pred             cceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          274 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       274 ~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                                     ....+.|+++.+++++.||++++|+++
T Consensus       236 ---------------~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  236 ---------------LSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             ---------------eeEEECCCCcEEEEecCCCcEEEEEcC
Confidence                           011236777999999999999999993

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=1.2e-20  Score=161.42  Aligned_cols=231  Identities=13%  Similarity=0.161  Sum_probs=166.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +.+|.+.|+.+.++. +..|.+|.++.++.|-.+. ..+....+ ......+.+....-.++++|       ..|.|||.
T Consensus       105 f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG-------e~i~IWD~  174 (433)
T KOG0268|consen  105 FKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCG-------EQIDIWDE  174 (433)
T ss_pred             eecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccC-------ceeeeccc
Confidence            357888999999999 6778888888899998764 34444432 12222222222222223332       48999999


Q ss_pred             CCCCEEEEEEcCC-ceeEEEEcCCe---EEEE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 TTGTALRELNFLT-SILAVRLNKKR---LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 ~~~~~~~~~~~~~-~v~~i~~~~~~---~~v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      +...++..++... .|.+++++|..   +..+ .|+.|.+||++...+++.+.....   ...++++| +.+.++++. +
T Consensus       175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnP-eafnF~~a~-E  249 (433)
T KOG0268|consen  175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNP-EAFNFVAAN-E  249 (433)
T ss_pred             ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc---ccceecCc-cccceeecc-c
Confidence            9999999888765 68999998754   3333 389999999999988877643222   23557777 445555554 7


Q ss_pred             ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      |..+..||++.....      |.++|..++|||.|+.+++||.|.+ ||||.+..+..-..+ ....-..|.|+.||.|.
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDS  327 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhh-hHhhhheeeEEEEeccc
Confidence            999999999876542      3389999999999999999999987 799999877542111 11112359999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCC
Q 019672          232 QFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +   |+++||+|+.|++|.-..
T Consensus       328 k---yi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  328 K---YIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             c---EEEecCCCcceeeeecch
Confidence            9   999999999999998654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.86  E-value=2.8e-20  Score=165.61  Aligned_cols=201  Identities=14%  Similarity=0.194  Sum_probs=140.8

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC----EEEEEE--cCCceeEEEEcC--CeEEEEE-CCeEEE
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALRELN--FLTSILAVRLNK--KRLVIVL-REKTYI  117 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~----~~~~~~--~~~~v~~i~~~~--~~~~v~~-d~~i~i  117 (337)
                      +.-.+.++..++++..+++|+     -|.+|++||+..=.    ..+.+.  -.+.|..+.+++  +.+++++ .-.++|
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             CceEEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            444556677788888888885     79999999986321    111111  124677777764  5555555 668999


Q ss_pred             EECCCCeeeeeec----------CCCCCceEEEEeeCCCccE-EEEcCCCCccEEEEEEccCCcccc-----------cC
Q 019672          118 YDANTLAILDTID----------TVPNLKGLCAFSPSLNACF-LAVPASTTKGSVLVYNVMELHSHC-----------EA  175 (337)
Q Consensus       118 ~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-la~~~~~~dg~v~i~d~~~~~~~~-----------~~  175 (337)
                      +|-...+......          +..+...+.+-+++|++.- +.+++  .||+++|||+...+...           .-
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--CCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9965544433332          2234455666777776543 44555  59999999998765321           16


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeeccCCcc-eeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       176 ~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~~~~~-~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +++.++|+|||++||+|+.||+ |.+|+..+..  ....++..|.. ..|+||+||+||+   +|++-+.|+++++|||+
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---YLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEeccccc---hhhhccCCCceeeeecc
Confidence            7999999999999999999998 7999975432  22333333333 3699999999999   99999999999999999


Q ss_pred             CCcccC
Q 019672          253 FAINQR  258 (337)
Q Consensus       253 ~~~~~~  258 (337)
                      ..+++-
T Consensus       395 q~kkpL  400 (641)
T KOG0772|consen  395 QFKKPL  400 (641)
T ss_pred             ccccch
Confidence            877643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.7e-20  Score=171.11  Aligned_cols=229  Identities=9%  Similarity=0.149  Sum_probs=165.8

Q ss_pred             EEEEc-CCCCEEEEEcCCce-EEEeCCCCcE------EEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672           12 FVSFN-QDNSGFALSTKDGF-KIFDSSTGRL------CYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus        12 ~~~fs-~dg~~la~g~~~g~-~vw~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+..+ |.+++|.+|+.||. ++|+...-..      +...+.|  .+.-+.....++.++.++       .|-+|++|+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~  101 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN  101 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence            34444 56678999999985 9998643321      1111111  122222334455555554       599999999


Q ss_pred             CCCC--CEEEEEE-cCCceeEEEE-cCCeEEEEE---CCeEEEEECCCC--eeeeeec------CC-CCCceEEEEeeCC
Q 019672           82 TTTG--TALRELN-FLTSILAVRL-NKKRLVIVL---REKTYIYDANTL--AILDTID------TV-PNLKGLCAFSPSL  145 (337)
Q Consensus        82 ~~~~--~~~~~~~-~~~~v~~i~~-~~~~~~v~~---d~~i~i~d~~~~--~~~~~~~------~~-~~~~~~~~~~~~~  145 (337)
                      ...+  -++.++. |...|.+++. .++...+++   |+.|++||++++  +.+..+.      .. .....+++++-++
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence            8876  3444453 4457999988 555555554   889999999977  2333321      11 2335678888888


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      .+..++.+|  ..+.+++||.++.+..     |+..|.++..++||+.+++||+||+ ||+||+...+++.++..  |..
T Consensus       182 t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e  256 (735)
T KOG0308|consen  182 TGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKE  256 (735)
T ss_pred             cceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccC
Confidence            887777776  5899999999987653     6689999999999999999999998 79999998889988753  344


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      .|+++.-+|+=+   .+.+|+.||.|..=|+..+.
T Consensus       257 ~VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  257 GVWALQSSPSFT---HVYSGGRDGNIYRTDLRNPA  288 (735)
T ss_pred             ceEEEeeCCCcc---eEEecCCCCcEEecccCCch
Confidence            499999999988   99999999999999998753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.4e-20  Score=151.16  Aligned_cols=230  Identities=11%  Similarity=0.128  Sum_probs=159.7

Q ss_pred             CCCeEEEEEcCCCCE-EEEE-cCCceEEEeCCCC-cEEEEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEE
Q 019672            7 SYPVFFVSFNQDNSG-FALS-TKDGFKIFDSSTG-RLCYERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~-la~g-~~~g~~vw~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ...+..++|++...- ++++ +++.+++||+..- +.+...+.|.-.+..+.++  .+...+.+.      .|++|++|+
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW~  133 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLWD  133 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEeec
Confidence            456889999987643 4444 4555799995332 3444443343344444443  344445553      899999999


Q ss_pred             CCCCCEEEEEEcCC-ceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-CCccEEEEcCC
Q 019672           82 TTTGTALRELNFLT-SILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-LNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~~~-~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~  155 (337)
                      ...++.+.++..+. -|....|+|.   -+..++ |+.+++||++.......|..|..  .+++..++ -+..++++++ 
T Consensus       134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~-  210 (311)
T KOG0277|consen  134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG-  210 (311)
T ss_pred             CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC-
Confidence            99988898887655 6888888763   343333 89999999986544444665542  33333332 2455778877 


Q ss_pred             CCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          156 TTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                       .|+.|+.||+++.+..      |.-.|..+.|||. ...||++|.|-+ +||||...+....+.. .+|..-+..+.||
T Consensus       211 -vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~-~~HtEFv~g~Dws  287 (311)
T KOG0277|consen  211 -VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETV-DHHTEFVCGLDWS  287 (311)
T ss_pred             -CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhh-hccceEEeccccc
Confidence             5999999999987642      4478999999995 458999999987 5999998665443322 2345568889999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEe
Q 019672          229 QSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +-..  .++|+++.|+.++||+
T Consensus       288 ~~~~--~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  288 LFDP--GQVASTGWDELLYVWN  307 (311)
T ss_pred             cccC--ceeeecccccceeeec
Confidence            7544  3999999999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.86  E-value=2e-19  Score=148.34  Aligned_cols=237  Identities=12%  Similarity=0.115  Sum_probs=174.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +|.+.|+|+..+.+.+++++|+.|. .++||+++|+++..... ..+..+++.+..++.+.+....-.  ..+.|.++|+
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg--~~~~v~~fdi  127 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG--YTCFVSVFDI  127 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC--cceEEEEEEc
Confidence            6889999999999999999998775 69999999999988754 567788888888887776542111  2568999998


Q ss_pred             C-------CCCEEEEEEcC-CceeEEEEcCC-eEEEEE--CCeEEEEECCCCeee-eeecCCCCCceEEEEeeCCCccEE
Q 019672           83 T-------TGTALRELNFL-TSILAVRLNKK-RLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        83 ~-------~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      +       ..++...+..+ +.++..-|.+- ..+++.  ++.|.+||+++++.+ ...+.+  ...+..+.++++..++
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~F  205 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYF  205 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhh--ccccccccccCCcceE
Confidence            7       44556665544 47777778653 334444  889999999998554 333433  3367788888999999


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCCCc------------eeEee
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASE-QGTIIRVFLVSEAT------------KSYSF  213 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~~~------------~~~~~  213 (337)
                      ++++  .|.+-++||..+...+.+    .||++.+++|.-..++.|+. +..-+--=+.+.|+            .+.++
T Consensus       206 iT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv  283 (327)
T KOG0643|consen  206 ITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV  283 (327)
T ss_pred             Eecc--cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence            9988  599999999999887654    99999999997777666653 32212111222332            22333


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      + + |-.+|++|+|+|+|+   -.++|+.||.|+|.-.+
T Consensus       284 k-G-HFGPINsvAfhPdGk---sYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  284 K-G-HFGPINSVAFHPDGK---SYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             c-c-cccCcceeEECCCCc---ccccCCCCceEEEEEec
Confidence            2 2 346899999999999   99999999999987554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.86  E-value=9.4e-19  Score=155.58  Aligned_cols=271  Identities=14%  Similarity=0.133  Sum_probs=189.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ..+.-|+|++|.++|+ .++|..+|+ .||+..+.+....  .+.+++..++++-++.++  . ||     .|++|..||
T Consensus       244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll--S-Gg-----KDRki~~Wd  314 (626)
T KOG2106|consen  244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL--S-GG-----KDRKIILWD  314 (626)
T ss_pred             ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe--e-cC-----ccceEEecc
Confidence            3446799999999998 566777775 9999877765433  344667777776555443  3 43     699999999


Q ss_pred             CCCCCEEEEEEcC---CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRELNFL---TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~~~~~---~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                       ..-+.+...+.+   ++|+.|+-.+..+++.+ .+.|.-=.+.++-.+.. ..+  ...+..++.+|...++++++  .
T Consensus       315 -~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v-~gh--~delwgla~hps~~q~~T~g--q  388 (626)
T KOG2106|consen  315 -DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV-QGH--GDELWGLATHPSKNQLLTCG--Q  388 (626)
T ss_pred             -ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE-Eec--ccceeeEEcCCChhheeecc--C
Confidence             333444444444   47888887666677777 55666556665533322 222  33677778788888999998  6


Q ss_pred             ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          158 KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       158 dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      |+.+++|+  ..+..    ...++.|+.|+|.| .+|.|+..|..+ |.|.++...+. ++.  ..+++.+|+|+|+|. 
T Consensus       389 dk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~-V~d~e~~~lv~-~~~--d~~~ls~v~ysp~G~-  460 (626)
T KOG2106|consen  389 DKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF-VLDTETQDLVT-IHT--DNEQLSVVRYSPDGA-  460 (626)
T ss_pred             cceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE-EEecccceeEE-EEe--cCCceEEEEEcCCCC-
Confidence            99999999  22222    23899999999999 999999999864 99999855543 332  256899999999999 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        +||.||.|+.|+||.++.....-..  -..+.+                 ....++.+..+++++++-+.|-.+..| 
T Consensus       461 --~lAvgs~d~~iyiy~Vs~~g~~y~r--~~k~~g-----------------s~ithLDwS~Ds~~~~~~S~d~eiLyW-  518 (626)
T KOG2106|consen  461 --FLAVGSHDNHIYIYRVSANGRKYSR--VGKCSG-----------------SPITHLDWSSDSQFLVSNSGDYEILYW-  518 (626)
T ss_pred             --EEEEecCCCeEEEEEECCCCcEEEE--eeeecC-----------------ceeEEeeecCCCceEEeccCceEEEEE-
Confidence              9999999999999999866542110  001111                 112344455566899999999999989 


Q ss_pred             EecCCCCe
Q 019672          314 FSINNCCE  321 (337)
Q Consensus       314 ~~~~~~~~  321 (337)
                       .+..|.+
T Consensus       519 -~~~~~~~  525 (626)
T KOG2106|consen  519 -KPSECKQ  525 (626)
T ss_pred             -ccccCcc
Confidence             5666653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=1.9e-19  Score=165.35  Aligned_cols=270  Identities=10%  Similarity=0.142  Sum_probs=188.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEee-CC-EEE-EEEccCCCEEEEEeCCCCCCCCCce
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAV-GA-FSI-VEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~-~~-~~~-~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      ..+|+..|..+.+.+.. +++.++.++ +++|.-..++.+-  .... .+ +.. +++....+...++++      .|..
T Consensus        10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~------~D~~   82 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG------MDTT   82 (745)
T ss_pred             eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec------ccce
Confidence            35788889888887775 667777555 7999965443322  1221 12 222 233332344445554      6999


Q ss_pred             EEEEECCCCCEEEEEEc-CCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           77 LCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      +.+|...+..++..+.. .+.|++++...+..++.+  |.++++|-+...  ...+..  ++..+.++..-|++ .++++
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l--~~~l~g--H~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGEL--VYSLQG--HTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhh--hcccCC--cchheeeeeecCCC-cEEec
Confidence            99999999999988764 458999997766665554  999999987543  334444  44456677766666 55666


Q ss_pred             CCCCccEEEEEEccCCc---ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          154 ASTTKGSVLVYNVMELH---SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~---~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      +  .|.+|++|.-.+.-   ..|+.-|+.+++-|++. +++++.||. ||+|++ +|+.+.++.  .|..-|++++..++
T Consensus       158 s--aDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~--ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  158 S--ADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMH--GHTNFVYSISMALS  230 (745)
T ss_pred             c--CcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeee--ccceEEEEEEecCC
Confidence            6  59999999864322   23668899999998864 679999996 799999 788887763  35677999997777


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEE
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  310 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~  310 (337)
                      ++   .+++++.|++++||+...             ..+.+.....++|+...           -.+..|++||+||.++
T Consensus       231 ~~---~Ivs~gEDrtlriW~~~e-------------~~q~I~lPttsiWsa~~-----------L~NgDIvvg~SDG~Vr  283 (745)
T KOG0301|consen  231 DG---LIVSTGEDRTLRIWKKDE-------------CVQVITLPTTSIWSAKV-----------LLNGDIVVGGSDGRVR  283 (745)
T ss_pred             CC---eEEEecCCceEEEeecCc-------------eEEEEecCccceEEEEE-----------eeCCCEEEeccCceEE
Confidence            77   899999999999999751             11122222345777643           1235699999999999


Q ss_pred             EEEEecCC
Q 019672          311 EYIFSINN  318 (337)
Q Consensus       311 ~~~~~~~~  318 (337)
                      +|..+..+
T Consensus       284 VfT~~k~R  291 (745)
T KOG0301|consen  284 VFTVDKDR  291 (745)
T ss_pred             EEEecccc
Confidence            99987553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.85  E-value=3e-19  Score=153.65  Aligned_cols=230  Identities=14%  Similarity=0.194  Sum_probs=168.0

Q ss_pred             CCCCCCeEEEEEc-CCC--CEEEEEcCCc-eEEEeCCCCcEEEE------EeeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            4 QSSSYPVFFVSFN-QDN--SGFALSTKDG-FKIFDSSTGRLCYE------RAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         4 ~~~~~~v~~~~fs-~dg--~~la~g~~~g-~~vw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      .+|.++|.+++|- ++.  ..|++++.|. +++|-.+.++....      .+...+..+....+++.+  +++     +.
T Consensus       141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~--~Sg-----S~  213 (423)
T KOG0313|consen  141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRF--CSG-----SW  213 (423)
T ss_pred             ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeE--Eee-----cc
Confidence            4788899988774 333  2477777665 69998877754321      233455556655555544  444     37


Q ss_pred             CceEEEEECCCC-------------------------CEEEEEE-cCCceeEEEEcCCeEE-EEE-CCeEEEEECCCCee
Q 019672           74 PRRLCLFNTTTG-------------------------TALRELN-FLTSILAVRLNKKRLV-IVL-REKTYIYDANTLAI  125 (337)
Q Consensus        74 d~~v~iwd~~~~-------------------------~~~~~~~-~~~~v~~i~~~~~~~~-v~~-d~~i~i~d~~~~~~  125 (337)
                      |++|+||+.++.                         .++.++. |..+|.++.|.+...+ .++ |.+|+.||+.+++.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~  293 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL  293 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc
Confidence            999999993211                         1233333 3458999999764433 333 99999999999988


Q ss_pred             eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------cccCceEEEEeCCCC-CEEEEEeCCC
Q 019672          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------HCEAPLAAIVLSSNG-MYIATASEQG  196 (337)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg-~~lat~s~dg  196 (337)
                      ..++.+.   ..+.+++..|...+||+++  .|..+++||.+++.-        .|++-|.++.|+|.. ..|++||.|+
T Consensus       294 ~~~~~~~---ksl~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  294 KSTLTTN---KSLNCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             eeeeecC---cceeEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            8777653   3577888888888888887  599999999987642        255889999999954 4789999999


Q ss_pred             cEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          197 TIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       197 ~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      + +++||+++.+ .++.+.+  |...|.++.|+..+    .+++|+.|++|+|+.-.
T Consensus       369 t-~klWDvRS~k~plydI~~--h~DKvl~vdW~~~~----~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  369 T-VKLWDVRSTKAPLYDIAG--HNDKVLSVDWNEGG----LIVSGGADNKLRIFKGS  418 (423)
T ss_pred             e-EEEEEeccCCCcceeecc--CCceEEEEeccCCc----eEEeccCcceEEEeccc
Confidence            8 6999999887 8888754  36679999998544    79999999999999743

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.9e-19  Score=149.69  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=168.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCE--EEEEeCCCCCCCCCceEE
Q 019672            2 SNQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL--LAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         2 ~~~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~d~~v~   78 (337)
                      +.++|.++|++++.  +|.++|+|+.| .++|||..+.+.+-..-.+.-.+.++.|.++.  --+.++     +.|+.|.
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~-----sdDG~i~  110 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG-----SDDGHII  110 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee-----cCCCcEE
Confidence            46789999999996  57789988876 57999998876654433333334444444432  133344     2699999


Q ss_pred             EEECCCCCEEEEEEcC-CceeEEEEcCCe-EEE--EECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           79 LFNTTTGTALRELNFL-TSILAVRLNKKR-LVI--VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~-~~v--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      +|+...=+++..+..+ ..|+.++++|.. +++  ..|+.+++||+-.++.-........+ ..  +.++|.+.+++..+
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~--v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TL--VSWSPQGDHFVVSG  187 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-ee--eEEcCCCCEEEEEe
Confidence            9999887778777644 479999999865 333  33889999999887655444332222 22  45557777777776


Q ss_pred             CCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe--e
Q 019672          155 STTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF--G  228 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f--s  228 (337)
                         ...|-||.+.+.+...+    ..+.|+.|-. +..|++|.+|+. |++||..++..+..+.  .|...|.++.+  .
T Consensus       188 ---~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~-i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~  260 (362)
T KOG0294|consen  188 ---RNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEW-ISLKDTDSDTPLTEFL--AHENRVKDIASYTN  260 (362)
T ss_pred             ---ccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCce-EEEeccCCCccceeee--cchhheeeeEEEec
Confidence               35699999887665433    4477777764 567889999986 7999999988877774  35677888874  3


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      |++.   +|+++|.||.|+|||++.....
T Consensus       261 ~~~~---~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  261 PEHE---YLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             CCce---EEEEeccCceEEEEEccccccC
Confidence            6676   9999999999999999877543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=6.4e-19  Score=169.28  Aligned_cols=279  Identities=15%  Similarity=0.171  Sum_probs=197.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--CC-ceEEEeCCCCc------------EE--EEEeeCCEEEEEEccCCCEEEEEeCCCC
Q 019672            7 SYPVFFVSFNQDNSGFALST--KD-GFKIFDSSTGR------------LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQ   69 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~--~~-g~~vw~~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~   69 (337)
                      ...|.+++.+|||..+|+|+  .| +.+||+.+.--            .+  ...+.+.+.++.+.+++.++|..+    
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS----   88 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS----   88 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc----
Confidence            44699999999999999998  44 46899865431            01  112335677777887777776654    


Q ss_pred             CCCCCceEEEEECCC----------C--------CEEEEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeee
Q 019672           70 PSLSPRRLCLFNTTT----------G--------TALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILD  127 (337)
Q Consensus        70 ~~~~d~~v~iwd~~~----------~--------~~~~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~  127 (337)
                         .|+-|.||....          |        +....+ .|...|.++.|+|+..++++   |++|.|||.++.+.+.
T Consensus        89 ---DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   89 ---DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ---CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence               489999999773          1        122333 35568999999988766655   9999999999998888


Q ss_pred             eecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEeC--
Q 019672          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATASE--  194 (337)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s~--  194 (337)
                      .+..|..  -+-.++++|-++++|+-+  .|++|+||++.+....+.           .....+.|||||++||++..  
T Consensus       166 vl~~H~s--~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  166 VLRGHQS--LVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeecccc--cccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            8876654  345678889999999988  599999999766443321           55789999999999998743  


Q ss_pred             -CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC--------CCc--c----cEEEEEeCCCcEEEEecCCCcccCC
Q 019672          195 -QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS--------MQF--Q----DILVATSSSGSLHVFSPGFAINQRR  259 (337)
Q Consensus       195 -dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d--------g~~--~----~~las~s~dg~v~iw~l~~~~~~~~  259 (337)
                       -+..+.|.+-.+.+.-+.|- | |.+++.+++|+|-        |..  +    ..+|+||.|++|-||....+++.- 
T Consensus       242 ~~~~~~~IieR~tWk~~~~Lv-G-H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~-  318 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKVDKDLV-G-HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF-  318 (942)
T ss_pred             CCcceeEEEecCCceeeeeee-c-CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh-
Confidence             22346777766665555553 3 3568999999973        110  1    168999999999999975443311 


Q ss_pred             CCccccccc-ccccccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          260 GGRTSSILG-SILPESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       260 ~~~~~~~~~-~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                             +. .+..+.+ .-.|++.+              -.|++.+.||+|..+.|+.++=+
T Consensus       319 -------vi~~lf~~SI~DmsWspdG--------------~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  319 -------VIHNLFNKSIVDMSWSPDG--------------FSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             -------hhhhhhcCceeeeeEcCCC--------------CeEEEEecCCeEEEEEcchHHhC
Confidence                   11 1122222 23566544              67999999999999999766544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.3e-19  Score=168.20  Aligned_cols=237  Identities=11%  Similarity=0.149  Sum_probs=166.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc----EEEE-EeeC--CEEEEEE---ccCCCEEEEEeCCCCCCCCCce
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYE-RAVG--AFSIVEM---LYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~----~~~~-~~~~--~~~~~~~---~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      +.+...++.+++-..+++++..-++||-..+..    +... ....  ...+..+   .+..|+++.++.       .+.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~-------nG~  111 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST-------NGV  111 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC-------CCc
Confidence            456778889999999999888878898765542    1111 1111  1112222   334577777765       689


Q ss_pred             EEEEECCC---CCEEEEE-EcCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           77 LCLFNTTT---GTALREL-NFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        77 v~iwd~~~---~~~~~~~-~~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      |.+||+..   ++.+..+ +|...+..+.|+.   +.++.++ |+.|++||++..+...++....+...-+.+++.++. 
T Consensus       112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-  190 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-  190 (839)
T ss_pred             EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-
Confidence            99999976   3433333 3445788888863   4444444 999999999988777777654444555677776643 


Q ss_pred             EEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          149 FLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      .++++.  +.|.+++||++....      .|.++|.|+.|+|++.+||||+.|++ |+|||+.+++....... ...++|
T Consensus       191 ~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tI-nTiapv  266 (839)
T KOG0269|consen  191 KFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTI-NTIAPV  266 (839)
T ss_pred             eEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEE-eeccee
Confidence            445444  589999999997653      36699999999999999999999997 79999987654222211 234679


Q ss_pred             EEEEeecCCCcccEEEEEeC--CCcEEEEecCCCccc
Q 019672          223 FSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQ  257 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~--dg~v~iw~l~~~~~~  257 (337)
                      .+|.|-|+.++  .||+++.  |-.|||||+..+.-|
T Consensus       267 ~rVkWRP~~~~--hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  267 GRVKWRPARSY--HLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             eeeeeccCccc--hhhhhhccccceEEEEeecccccc
Confidence            99999999884  7877764  557999999876543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1e-18  Score=153.88  Aligned_cols=278  Identities=14%  Similarity=0.162  Sum_probs=190.1

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            2 SNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         2 ~~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      ++.++.++|++++|+|....|.+++-++ ++||-++..  .++...+.  -++...++.+.+.-.+++++      ....
T Consensus       208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky  281 (514)
T KOG2055|consen  208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKY  281 (514)
T ss_pred             cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceE
Confidence            4568889999999999999988777766 699987754  33444433  45556666666664555555      4678


Q ss_pred             EEEEECCCCCEEEEE---EcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           77 LCLFNTTTGTALREL---NFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        77 v~iwd~~~~~~~~~~---~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +..||+.+.+...--   .... .+..+.++++.  +++++ .|.|.+.-..+++.+.++....   .+..+.++.++..
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence            999999887654321   1111 34445555544  44444 6789999888998888887543   3556666667777


Q ss_pred             EEEcCCCCccEEEEEEccCCccccc----Cc--eEEEEeCCCCCEEEEEeCCCcEEEEEEcCC------CceeEeeccCC
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHCE----AP--LAAIVLSSNGMYIATASEQGTIIRVFLVSE------ATKSYSFRRGT  217 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~~----~~--i~~~~~s~dg~~lat~s~dg~~i~vwd~~~------~~~~~~~~~~~  217 (337)
                      |..++  .+|.|.+||++....++.    +.  -++++.|++|.+||+||+.|. +.|||.++      .+++.++..  
T Consensus       359 l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--  433 (514)
T KOG2055|consen  359 LLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--  433 (514)
T ss_pred             EEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence            76666  389999999999887765    33  467888999999999999995 79999653      334444421  


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCC--CcEEEEecCCCcccCCCCcccccccccccccceeecccccce-eeeeccCCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSS--GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH-VLRNAFPAG  294 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~d--g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~  294 (337)
                      -...|++|.|+||++   +||.+|.-  +.+++--+....-          +..+.+.         ... -.+..++|+
T Consensus       434 Ltt~Itsl~Fn~d~q---iLAiaS~~~knalrLVHvPS~TV----------FsNfP~~---------n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQ---ILAIASRVKKNALRLVHVPSCTV----------FSNFPTS---------NTKVGHVTCMAFS  491 (514)
T ss_pred             hheeeeeeeeCcchh---hhhhhhhccccceEEEeccceee----------eccCCCC---------CCcccceEEEEec
Confidence            234699999999999   88888764  5566665543221          1111110         000 012344567


Q ss_pred             cccCEEEEEEeCCcEEEEEEe
Q 019672          295 VKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       295 ~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      |.+.++++|...|.+..|.|.
T Consensus       492 P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  492 PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCceEEeecCCCceeeEeec
Confidence            777899999999999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-17  Score=155.33  Aligned_cols=234  Identities=12%  Similarity=0.181  Sum_probs=164.5

Q ss_pred             eEEEEEcCCC--CEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           10 VFFVSFNQDN--SGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        10 v~~~~fs~dg--~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      |+++. +|.-  +.++.|+.+| +++||+.+++++++.+.....+.++...+-+-+++-|     ..+|+|.+.|++.++
T Consensus       162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG-----~~~G~ViifNlK~dk  235 (910)
T KOG1539|consen  162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIG-----LENGTVIIFNLKFDK  235 (910)
T ss_pred             eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEe-----ccCceEEEEEcccCc
Confidence            66553 6665  3478888877 6999999999999988766666666655533222222     258999999999999


Q ss_pred             EEEEEEcC-CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeec-CCCC--------------------------
Q 019672           87 ALRELNFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTID-TVPN--------------------------  134 (337)
Q Consensus        87 ~~~~~~~~-~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~-~~~~--------------------------  134 (337)
                      .+.++.+. ++|++++|.  +..+++++  .|.+.+||+...+.+..+. .|..                          
T Consensus       236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~  315 (910)
T KOG1539|consen  236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW  315 (910)
T ss_pred             EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence            99999997 899999996  33444444  4678888886544333221 0000                          


Q ss_pred             --------------------C---------ce------------------------------------------------
Q 019672          135 --------------------L---------KG------------------------------------------------  137 (337)
Q Consensus       135 --------------------~---------~~------------------------------------------------  137 (337)
                                          |         .+                                                
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence                                0         00                                                


Q ss_pred             -------------------------------------------------------EEEEeeCCCccEEEEcCCCCccEEE
Q 019672          138 -------------------------------------------------------LCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus       138 -------------------------------------------------------~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                                                                             +.|++.++.|.+.+.+.  ..|.|-
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~--S~G~Id  473 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY--SKGTID  473 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec--cCCeEE
Confidence                                                                   12222233333433333  478899


Q ss_pred             EEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-------------------
Q 019672          163 VYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-------------------  215 (337)
Q Consensus       163 i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-------------------  215 (337)
                      +|+++++..        .|..+|+.++.+.-++.+++++.+|. ++.||..+...+..++.                   
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~  552 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA  552 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence            999887643        34589999999999999999999996 69999987764333321                   


Q ss_pred             --------------------CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          216 --------------------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       216 --------------------~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                                          -.|...|++++|||||+   +|++++.|++|++||+.+..
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr---WlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR---WLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc---EEEEeecCCcEEEEeccCcc
Confidence                                12456799999999999   99999999999999998754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-17  Score=153.35  Aligned_cols=244  Identities=15%  Similarity=0.184  Sum_probs=174.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE-EEEc--CCceeEEEEcC-CeEEEEE-CCeEEEEECC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNF--LTSILAVRLNK-KRLVIVL-REKTYIYDAN  121 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~-~~~~--~~~v~~i~~~~-~~~~v~~-d~~i~i~d~~  121 (337)
                      .++..+++...++.+|+.-       .++.|.||+++.+-... .+..  ...|.+++|.+ .+++.+. +++|.-||+.
T Consensus        26 s~I~slA~s~kS~~lAvsR-------t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSR-------TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             cceEEEEEeccCCceeeec-------cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence            4555566666777777654       48999999998864433 2333  34799999984 4555554 8999999999


Q ss_pred             CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeCCCCCEEEEEeC
Q 019672          122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat~s~  194 (337)
                      ++++...++...+  .+.+++.+|.+..++.+.  +||.+..++.......       +++.|.+++|+|+|..||+||.
T Consensus        99 ~lk~~~~~d~~gg--~IWsiai~p~~~~l~Igc--ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   99 TLKQKYNIDSNGG--AIWSIAINPENTILAIGC--DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             cCceeEEecCCCc--ceeEEEeCCccceEEeec--CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            9998888865443  566777777777777764  5897777777665543       2389999999999999999999


Q ss_pred             CCcEEEEEEcCCCceeEeec-----cCC-cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672          195 QGTIIRVFLVSEATKSYSFR-----RGT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  268 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~-----~~~-~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~  268 (337)
                      ||. ||+||..+++.++..+     ... .+.-|++|.|-.|+.    |++|...|+|++||-..+....    +.... 
T Consensus       175 Dg~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t----I~sgDS~G~V~FWd~~~gTLiq----S~~~h-  244 (691)
T KOG2048|consen  175 DGV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST----IASGDSAGTVTFWDSIFGTLIQ----SHSCH-  244 (691)
T ss_pred             Cce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc----EEEecCCceEEEEcccCcchhh----hhhhh-
Confidence            995 7999999998776221     111 234589999998885    9999999999999987654321    10000 


Q ss_pred             ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeee
Q 019672          269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREF  330 (337)
Q Consensus       269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  330 (337)
                         ..   +          +.+++...+++++++++.|+.+..|...+.+.+   |......
T Consensus       245 ---~a---d----------Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---wv~~~~r  287 (691)
T KOG2048|consen  245 ---DA---D----------VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---WVINSRR  287 (691)
T ss_pred             ---hc---c----------eeEEEEcCCCCeEEEccCCCceEEEEecCCccc---eeeeccc
Confidence               00   0          112222445689999999999999999887664   6665443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.83  E-value=1.4e-18  Score=152.61  Aligned_cols=222  Identities=11%  Similarity=0.186  Sum_probs=145.3

Q ss_pred             CCceEEEEECCCCCE----------EEEEEcCC-ceeEEEEcCCe---EEEEE-CCeEEEEECCCCee-------eeeec
Q 019672           73 SPRRLCLFNTTTGTA----------LRELNFLT-SILAVRLNKKR---LVIVL-REKTYIYDANTLAI-------LDTID  130 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~----------~~~~~~~~-~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~-------~~~~~  130 (337)
                      ..+.|.|||..+..-          -..+..+. .=.+++|++..   ++.+. |++|.+||+.....       ...+.
T Consensus       145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~  224 (422)
T KOG0264|consen  145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS  224 (422)
T ss_pred             CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence            478999999764321          11333333 36677887542   33333 78999999965322       22334


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC--Ccc-----cccCceEEEEeCC-CCCEEEEEeCCCcEEEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LHS-----HCEAPLAAIVLSS-NGMYIATASEQGTIIRVF  202 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~~-----~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vw  202 (337)
                      .+.....-+++.+.. ..++++++  .|+.+.|||+++  .+.     .|.++|+|++|+| ++..|||||.|++ +++|
T Consensus       225 ~h~~~VeDV~~h~~h-~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~Lw  300 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLH-EDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALW  300 (422)
T ss_pred             cCCcceehhhccccc-hhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEe
Confidence            444444445555532 34667777  599999999995  222     2448999999999 6778999999998 5999


Q ss_pred             EcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcc-----cc-cc-ccccccc
Q 019672          203 LVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT-----SS-IL-GSILPES  274 (337)
Q Consensus       203 d~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~-----~~-~~-~~~~~~~  274 (337)
                      |+++.. ++..+.  .|...|.+|.|||+..  +.||+++.|+.++|||+..-.+....+..     .- |+ ++.-.+.
T Consensus       301 DlRnL~~~lh~~e--~H~dev~~V~WSPh~e--tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV  376 (422)
T KOG0264|consen  301 DLRNLNKPLHTFE--GHEDEVFQVEWSPHNE--TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV  376 (422)
T ss_pred             echhcccCceecc--CCCcceEEEEeCCCCC--ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence            999864 456664  3467899999999987  69999999999999999875443321100     00 00 1111111


Q ss_pred             ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ..--|.+..             .-.|++++.|+.++||++.
T Consensus       377 ~DfsWnp~e-------------PW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  377 SDFSWNPNE-------------PWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccCCCCC-------------CeEEEEecCCceEEEeecc
Confidence            122344433             2457789999999999985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=5e-19  Score=155.97  Aligned_cols=213  Identities=15%  Similarity=0.171  Sum_probs=158.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--   83 (337)
                      +++|.+++-+|+|.+|++|+..+ +.+|.+.+|+++..++.|--.+.++.|..+...+++++     .|+.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-----kDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-----KDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-----CCccEEEEEEEee
Confidence            46799999999999999997776 69999999998766544433344444555444455553     69999999853  


Q ss_pred             -------CCCEEEEEEcCC-ceeEEEEcCC----eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           84 -------TGTALRELNFLT-SILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        84 -------~~~~~~~~~~~~-~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                             +-++++.+..+. +|+++.....    +++.++ |.++++||+..+.++.++..+.   .+.++..+|-+..+
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~---si~av~lDpae~~~  232 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS---SIKAVALDPAERVV  232 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC---cceeEEEcccccEE
Confidence                   234556665555 8999887543    445555 9999999999999998886643   35666777777777


Q ss_pred             EEcCCCCccEEEEEEccCCc---c------------------ccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          151 AVPASTTKGSVLVYNVMELH---S------------------HCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~---~------------------~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      ..++  .+|.|.+.++....   .                  .|+  .+|+|++++-||++|++|+.||. ++|||+.+.
T Consensus       233 yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~-VcvWdi~S~  309 (476)
T KOG0646|consen  233 YIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK-VCVWDIYSK  309 (476)
T ss_pred             EecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC-EEEEecchH
Confidence            7766  59999998875432   0                  012  48999999999999999999998 589999999


Q ss_pred             ceeEeeccCCcceeEEEEEeecCCC
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      ++++++..  ..++|+.+.+.|=.+
T Consensus       310 Q~iRtl~~--~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  310 QCIRTLQT--SKGPVTNLQINPLER  332 (476)
T ss_pred             HHHHHHhh--hccccceeEeecccc
Confidence            99888752  356788888865433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2.2e-19  Score=163.82  Aligned_cols=214  Identities=13%  Similarity=0.159  Sum_probs=158.6

Q ss_pred             CCceEEEEECCCCCE------EEEEEcCCc-eeEEEE--cCCeEEEEE-CCeEEEEECCCC--eeeeeecCCCCCceEEE
Q 019672           73 SPRRLCLFNTTTGTA------LRELNFLTS-ILAVRL--NKKRLVIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCA  140 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~------~~~~~~~~~-v~~i~~--~~~~~~v~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~  140 (337)
                      .|+.|++|+......      +.+++++.. |.++.+  +.+.++.++ |-+|++|+...+  -...++.+|.+  .+-|
T Consensus        45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--YVkc  122 (735)
T KOG0308|consen   45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--YVKC  122 (735)
T ss_pred             CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc--hhee
Confidence            699999999865432      445555543 555544  344455555 889999998765  34556666655  4556


Q ss_pred             Eee-CCCccEEEEcCCCCccEEEEEEccCCcc--c--------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          141 FSP-SLNACFLAVPASTTKGSVLVYNVMELHS--H--------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       141 ~~~-~~~~~~la~~~~~~dg~v~i~d~~~~~~--~--------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      +++ .+++.++|++|  -|+.|++||+.++..  +              +..+|.+++.++.|..|++|+..+- +|+||
T Consensus       123 la~~ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wD  199 (735)
T KOG0308|consen  123 LAYIAKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWD  199 (735)
T ss_pred             eeecccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEec
Confidence            665 56777888888  599999999997632  1              2267999999999999999999985 79999


Q ss_pred             cCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccccc
Q 019672          204 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  283 (337)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  283 (337)
                      -++++++-.++ | |...|.+|..++||.   .++++|.||+|++|||..+....          .+.- ....+|+...
T Consensus       200 prt~~kimkLr-G-HTdNVr~ll~~dDGt---~~ls~sSDgtIrlWdLgqQrCl~----------T~~v-H~e~VWaL~~  263 (735)
T KOG0308|consen  200 PRTCKKIMKLR-G-HTDNVRVLLVNDDGT---RLLSASSDGTIRLWDLGQQRCLA----------TYIV-HKEGVWALQS  263 (735)
T ss_pred             cccccceeeee-c-cccceEEEEEcCCCC---eEeecCCCceEEeeeccccceee----------eEEe-ccCceEEEee
Confidence            99999998886 4 466799999999999   99999999999999998765432          1111 1123676644


Q ss_pred             ceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          284 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                                .+.-..+++|+.||.++.-++...
T Consensus       264 ----------~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  264 ----------SPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ----------CCCcceEEecCCCCcEEecccCCc
Confidence                      223378999999999998888653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=1.3e-18  Score=153.17  Aligned_cols=216  Identities=15%  Similarity=0.184  Sum_probs=155.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .|-..|.+++.++||++||+|.-+. +.||+.++.+.+.....  +.+..+++-..++-+...+       .|++|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s-------~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS-------ADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee-------cCCceEEEe
Confidence            4667899999999999999998876 58999999987766544  3444455544455554444       599999999


Q ss_pred             CCCCCEEEE-EEcCCceeEEEE-cCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRE-LNFLTSILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~-~~~~~~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      +.....+.+ +.|+..|.+|.. +..+.+.++  |.++++|++.....+ .+..+......+++-.   ..++++++  .
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~In---~~HfvsGS--d  346 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFIN---DEHFVSGS--D  346 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEec---ccceeecc--C
Confidence            987666655 456667888865 445555554  899999999654332 2333332223333332   22677776  5


Q ss_pred             ccEEEEEEccCCccccc-----------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc----eeEeeccC
Q 019672          158 KGSVLVYNVMELHSHCE-----------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----KSYSFRRG  216 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~-----------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~----~~~~~~~~  216 (337)
                      +|.|.+|++.+.+.++.                 ..|++++..|...++|+||.+|. +|+|-+.+|-    .++.+.  
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls--  423 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS--  423 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence            99999999988776532                 26899999999999999999997 6999998883    333332  


Q ss_pred             CcceeEEEEEeecCCCcccEEEEE
Q 019672          217 TYPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       217 ~~~~~i~~l~fs~dg~~~~~las~  240 (337)
                       -..-|++|+|+++|+   ++++|
T Consensus       424 -~~GfVNsl~f~~sgk---~ivag  443 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGK---RIVAG  443 (479)
T ss_pred             -cccEEEEEEEccCCC---EEEEe
Confidence             244599999999999   77777

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.82  E-value=3.1e-18  Score=150.54  Aligned_cols=236  Identities=12%  Similarity=0.133  Sum_probs=158.0

Q ss_pred             CCCCCeEEEEEcCCCCE-EEEEcCCc-eEEEeCCCCcE------------EEEEeeCCEEEEEEccCCCEEEEEeCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSG-FALSTKDG-FKIFDSSTGRL------------CYERAVGAFSIVEMLYSSSLLAIVGAGEQP   70 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~-la~g~~~g-~~vw~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   70 (337)
                      .|.++|+.++.-|+... +|+++..+ +.|||..+..-            ....+...-.-+.+.....+..+.++    
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~----  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS----  197 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc----
Confidence            46778888999988866 45566655 69999654311            11112121111233333344444443    


Q ss_pred             CCCCceEEEEECCCCCE-------EEEEE-cCCceeEEEEcCC---eEEEEE-CCeEEEEECCC--CeeeeeecCCCCCc
Q 019672           71 SLSPRRLCLFNTTTGTA-------LRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANT--LAILDTIDTVPNLK  136 (337)
Q Consensus        71 ~~~d~~v~iwd~~~~~~-------~~~~~-~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~--~~~~~~~~~~~~~~  136 (337)
                        .|.+|++||+.....       ...+. +...|.+++|++.   .+..++ |+.+.|||+++  .+..+....+..  
T Consensus       198 --~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~--  273 (422)
T KOG0264|consen  198 --DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA--  273 (422)
T ss_pred             --CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC--
Confidence              699999999865432       22233 3347888888653   344444 78999999995  444445554444  


Q ss_pred             eEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCc
Q 019672          137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       137 ~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      .+.+++++|- +..||+++  .|++|.+||+++.+..      |...|.+|.|||. .+.||+++.|+++ .|||+..-.
T Consensus       274 ~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig  350 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIG  350 (422)
T ss_pred             ceeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE-EEEeccccc
Confidence            4556666553 45667766  5999999999987642      4488999999995 4589999999985 799996422


Q ss_pred             eeE------------eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          209 KSY------------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       209 ~~~------------~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..+            -|..+.|.+.|..+.|+|+..-  .+++.++|+.++||+...
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW--~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW--TIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCe--EEEEecCCceEEEeeccc
Confidence            221            2555667888999999999883  688889999999999763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=4.3e-18  Score=154.20  Aligned_cols=235  Identities=17%  Similarity=0.174  Sum_probs=171.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEE-EEEeCCCC------------
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLL-AIVGAGEQ------------   69 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~g~~------------   69 (337)
                      +|.+.|+|++..|.|.+||+|+++| ++||.+.+|+++...+. ..+.++++.+.++.- +.++.+.+            
T Consensus       398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~  477 (733)
T KOG0650|consen  398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRL  477 (733)
T ss_pred             ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchh
Confidence            6889999999999999999999998 59999999999887654 445666666555322 12222111            


Q ss_pred             --------------CCCCCceEEEEECCCCC-----EEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCe
Q 019672           70 --------------PSLSPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLA  124 (337)
Q Consensus        70 --------------~~~~d~~v~iwd~~~~~-----~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~  124 (337)
                                    ....+..+..|.-...+     .-..+.+..+|..+.|+.++  ++++.    ...|.|+++...+
T Consensus       478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~  557 (733)
T KOG0650|consen  478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK  557 (733)
T ss_pred             hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence                          12346678888654211     12356778899999998654  44444    2489999997765


Q ss_pred             eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEE
Q 019672          125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTII  199 (337)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i  199 (337)
                      .+.-|...  ...+.+..++|...+++++.   ...|+|||+..+..+.+     ..|..++.+|.|.-|+.|+.|+.+ 
T Consensus       558 sQ~PF~ks--kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~-  631 (733)
T KOG0650|consen  558 SQSPFRKS--KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM-  631 (733)
T ss_pred             ccCchhhc--CCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee-
Confidence            54444322  22355667777777877775   57899999988665543     679999999999999999999985 


Q ss_pred             EEEEcCCCcee-EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          200 RVFLVSEATKS-YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       200 ~vwd~~~~~~~-~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ..+|+.-.... ++++  +|...+++|+|++.-.   ++|+|+.||++.||-
T Consensus       632 ~WfDldlsskPyk~lr--~H~~avr~Va~H~ryP---Lfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYP---LFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEEcccCcchhHHhh--hhhhhhhhhhhccccc---eeeeecCCCcEEEEe
Confidence            58898766443 4443  3466799999999988   999999999999995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.6e-17  Score=150.19  Aligned_cols=233  Identities=11%  Similarity=0.103  Sum_probs=178.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE----EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL----CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      -+.+|++++|+.+.++||++-.+| +.+||+.+.=.    ++....+.+..++++ .+..+.. .+      .++.|.-|
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS-~g------~sg~i~Ew   95 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFS-SG------LSGSITEW   95 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEe-ec------CCceEEEE
Confidence            467899999999999999998887 59999987621    222223445555555 2333333 33      38999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+.+++++..+...+ .|.+++.++.  .+.+.. ||.++.+++..++.............+++++++|++..++.++  
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs--  173 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS--  173 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc--
Confidence            999999998887654 8999998764  444443 7778888888777665544444456789999999999888876  


Q ss_pred             CccEEEEEEccCCcccc-----c--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          157 TKGSVLVYNVMELHSHC-----E--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~-----~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      .||.|++||+.++..++     .        .-|.++.|-.++ .||+|.+-|+ |++||...|.+++.+.-  +.+.|.
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl  249 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL  249 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence            59999999999887765     1        337888887775 6899999998 69999999999887753  466799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +|+-++++.   ++.+++-|+.|--|...+.+
T Consensus       250 ~Lav~~~~d---~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  250 ALAVADNED---RVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             EEEEcCCCC---eEEEccCCCceEEEEecCCc
Confidence            999999988   99999999998888776654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=1.5e-17  Score=139.09  Aligned_cols=196  Identities=11%  Similarity=0.129  Sum_probs=144.1

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCce-EEEeCCCCcE------EE------EEe---eCC--EEEEEEccCCCEEEEE
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDGF-KIFDSSTGRL------CY------ERA---VGA--FSIVEMLYSSSLLAIV   64 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g~-~vw~~~~~~~------~~------~~~---~~~--~~~~~~~~~~~~~~~~   64 (337)
                      .+|.+.|+++++.+ .|+++++|+.||. .|||++.-..      +.      ..+   .|.  +..+.+-+..+.+.+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36788999999987 6788999998885 9999875421      10      011   122  2223333334455444


Q ss_pred             eCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---e--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672           65 GAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---R--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        65 ~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                      +.      -|.++++||..+-+....+++++.|..-+++|-   +  +++++ +-.|++-|+..|..-+++..|.  .++
T Consensus       120 sS------FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr--~~v  191 (397)
T KOG4283|consen  120 SS------FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR--DGV  191 (397)
T ss_pred             cc------ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc--Cce
Confidence            43      699999999999999889999988887776652   2  23333 5599999999999989987654  478


Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCc------------c--------cccCceEEEEeCCCCCEEEEEeCCCcE
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELH------------S--------HCEAPLAAIVLSSNGMYIATASEQGTI  198 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~------------~--------~~~~~i~~~~~s~dg~~lat~s~dg~~  198 (337)
                      +++.++|...++.+.|+ .||.|++||++...            .        .|.+.|+.++|+.||.++++.+.|.. 
T Consensus       192 laV~Wsp~~e~vLatgs-aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-  269 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGS-ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-  269 (397)
T ss_pred             EEEEeccCceeEEEecC-CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence            88888887777665555 69999999997531            0        12278999999999999999999987 


Q ss_pred             EEEEEcCCCce
Q 019672          199 IRVFLVSEATK  209 (337)
Q Consensus       199 i~vwd~~~~~~  209 (337)
                      +|+|+..+|+-
T Consensus       270 ~r~wn~~~G~n  280 (397)
T KOG4283|consen  270 IRVWNMESGRN  280 (397)
T ss_pred             eEEeecccCcc
Confidence            69999998863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.6e-17  Score=157.10  Aligned_cols=233  Identities=11%  Similarity=0.120  Sum_probs=169.3

Q ss_pred             eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-CEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCC
Q 019672           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANT  122 (337)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~  122 (337)
                      ..+...+++.++++.+..++       +|+.|++|+.... +....+. ....|.+++...+++++++ +++|.+|.+..
T Consensus        13 t~G~t~i~~d~~gefi~tcg-------sdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCG-------SDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             cCceEEEEEcCCCCEEEEec-------CCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence            34566667777778665554       4999999987554 3334444 5668999999988888888 88999999987


Q ss_pred             Cee---eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeC
Q 019672          123 LAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       123 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~  194 (337)
                      ++.   +..+..   +...++  +++++.++|.++  .|-.|++.++.+...     .|+++|.++.|+|+|++||+.+-
T Consensus        86 ~~~~~iL~Rftl---p~r~~~--v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~  158 (933)
T KOG1274|consen   86 GEEDTILARFTL---PIRDLA--VSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC  158 (933)
T ss_pred             CCccceeeeeec---cceEEE--EecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence            754   333332   333444  456677999887  488899998876543     25599999999999999999999


Q ss_pred             CCcEEEEEEcCCCceeEeeccCC-----c-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672          195 QGTIIRVFLVSEATKSYSFRRGT-----Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  268 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~~~~-----~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~  268 (337)
                      ||+ +++||++++...+.+..-.     . ...+..++|+|+|.   .||+...|++|++|+.......-      .+..
T Consensus       159 dG~-v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---~la~~~~d~~Vkvy~r~~we~~f------~Lr~  228 (933)
T KOG1274|consen  159 DGK-VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG---TLAVPPVDNTVKVYSRKGWELQF------KLRD  228 (933)
T ss_pred             Cce-EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC---eEEeeccCCeEEEEccCCceehe------eecc
Confidence            998 5999999998876663211     1 22367899999987   79999999999999987654422      1111


Q ss_pred             ccccc-cceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          269 SILPE-SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       269 ~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      ..... .....|+|.              +.||++++.||.|.+|++++
T Consensus       229 ~~~ss~~~~~~wsPn--------------G~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPN--------------GKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccccceEEEEEcCC--------------CcEEeeeccCCcEEEEeccc
Confidence            11111 123355554              39999999999999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.5e-17  Score=140.27  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=163.6

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCe----EEEEE-CCeEEEEEC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR----LVIVL-REKTYIYDA  120 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~----~~v~~-d~~i~i~d~  120 (337)
                      |...+.+++-+..++  ++|+     .|.+|+|||+++...+..+- +.+.|+++.|.+..    ++.+. ||.|.+|+.
T Consensus        42 H~~sitavAVs~~~~--aSGs-----sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   42 HAGSITALAVSGPYV--ASGS-----SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             cccceeEEEecceeE--eccC-----CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence            333444444444444  4443     69999999999988887654 55689999997654    55555 899999999


Q ss_pred             CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCC
Q 019672          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      ..-+.+.++..+.+.  +..++.+|.+.+-.+.|  .|+.+++||+-+++....    ..-+.+.|+|.|.+++.++.++
T Consensus       115 ~~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQ--VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             CCeEEeeeecccccc--cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            999999999877654  66666677676655666  499999999998875422    3445599999999999999886


Q ss_pred             cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccc--c
Q 019672          197 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE--S  274 (337)
Q Consensus       197 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~--~  274 (337)
                        |-||.+.+-....++.   .+..+.|+.|-..+    .|++|.+|+.|.+||.+......          .++.+  +
T Consensus       191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~----------~~~AH~~R  251 (362)
T KOG0294|consen  191 --IDIYQLDNASVFREIE---NPKRILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLT----------EFLAHENR  251 (362)
T ss_pred             --EEEEecccHhHhhhhh---ccccceeeeecCCc----eEEEecCCceEEEeccCCCccce----------eeecchhh
Confidence              5799998877655443   23457888886444    79999999999999987533211          11111  1


Q ss_pred             ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      +-.+...           ..++..+|+++++||.|.+|.++.++-
T Consensus       252 VK~i~~~-----------~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  252 VKDIASY-----------TNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             eeeeEEE-----------ecCCceEEEEeccCceEEEEEcccccc
Confidence            1111111           123447999999999999999988843

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.1e-17  Score=147.44  Aligned_cols=267  Identities=11%  Similarity=0.134  Sum_probs=183.6

Q ss_pred             eEEEeCCCCcEEEEEeeCCEEEE-EE-ccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE-EEEcCCceeEEEEcCCe
Q 019672           30 FKIFDSSTGRLCYERAVGAFSIV-EM-LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKKR  106 (337)
Q Consensus        30 ~~vw~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~  106 (337)
                      +.+||+.+|..+..........- .. .-...+++...-      ....|.+|.+....... .+-.+++|.++.-++.+
T Consensus        20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~------~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G   93 (476)
T KOG0646|consen   20 CIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQL------KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG   93 (476)
T ss_pred             eeEEecCCCceeEEecCcccccchhhhhhchhheeeecc------cCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence            68999999987766543311110 00 111233333322      35689999987665544 45567899999988876


Q ss_pred             EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc---------c---
Q 019672          107 LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---------S---  171 (337)
Q Consensus       107 ~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---------~---  171 (337)
                      .++..   .+.+++|.+.+|.++..+..|.  ..+.++.++.|+.+++++|  .||.|.+|++.+.-         .   
T Consensus        94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~  169 (476)
T KOG0646|consen   94 YFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHI  169 (476)
T ss_pred             eEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceee
Confidence            55544   6899999999999998886554  4688999999999999998  59999999875321         1   


Q ss_pred             --cccCceEEEEeCCC--CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672          172 --HCEAPLAAIVLSSN--GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  247 (337)
Q Consensus       172 --~~~~~i~~~~~s~d--g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~  247 (337)
                        .|+-+|+.+...+.  ..+|+|+|.|.+ +|+||+..|.++.++.   .+..|.+++.+|-+.   .+..|+.+|.|.
T Consensus       170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~---~~yiGt~~G~I~  242 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAER---VVYIGTEEGKIF  242 (476)
T ss_pred             eccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEccccc---EEEecCCcceEE
Confidence              13478888888765  358999999987 7999999999988774   355799999999999   999999999999


Q ss_pred             EEecCCCcccCC-C-Ccccccccccccccceeeccccccee--eeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          248 VFSPGFAINQRR-G-GRTSSILGSILPESVNEVLDPADHHV--LRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       248 iw~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      +.++.+....+. . ++....-+..       +-...++..  .+..++-..++..|++|+.||+|.+|++....|-
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~-------~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQ-------INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             eeehhcCCcccccccccccccccce-------eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            998865442111 0 0000000000       000001110  1122233456789999999999999999776665

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.79  E-value=7.6e-18  Score=155.37  Aligned_cols=236  Identities=13%  Similarity=0.208  Sum_probs=171.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCC---EEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+...+++++.+|+|++||+|...| ++||++...+.+...+.|+..+.++.|+..   .-.+.+++     .|+-|.|+
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~  531 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVY  531 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEE
Confidence            4567899999999999999998877 699999887765544445555555544432   12334442     69999999


Q ss_pred             ECCCCC-EEEEEE-cCCceeEEEEcCCe----EEEEECCeEEEEECCCC-eeeeeecCC---CCCceEEEEeeCCCccEE
Q 019672           81 NTTTGT-ALRELN-FLTSILAVRLNKKR----LVIVLREKTYIYDANTL-AILDTIDTV---PNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        81 d~~~~~-~~~~~~-~~~~v~~i~~~~~~----~~v~~d~~i~i~d~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~l  150 (337)
                      |...+- ++.++. |.+.|++|+|..++    ++.++.++...|+.... .....+..+   .....++.+..+|...++
T Consensus       532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            987653 445554 45689999985432    33444333334444321 011111111   122456778888888899


Q ss_pred             EEcCCCCccEEEEEEccCCcccc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      +++.  .|..|+|||+.+++...        ++..-.+..+|.|.||||.+.|.+ +.++|..+|+++.++. | |...|
T Consensus       612 ~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt-l~~~Df~sgEcvA~m~-G-HsE~V  686 (1080)
T KOG1408|consen  612 VTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT-LCFVDFVSGECVAQMT-G-HSEAV  686 (1080)
T ss_pred             EEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc-eEEEEeccchhhhhhc-C-cchhe
Confidence            9888  69999999999987653        277888999999999999999998 5899999999998875 3 35569


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +.|.|++|-+   .|++.+.||.|.||.+..
T Consensus       687 TG~kF~nDCk---HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  687 TGVKFLNDCK---HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeecccch---hheeecCCceEEEEECch
Confidence            9999999999   999999999999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.4e-17  Score=134.53  Aligned_cols=235  Identities=14%  Similarity=0.175  Sum_probs=163.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc---EEEEEe--eCCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYERA--VGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~---~~~~~~--~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (337)
                      +.|++.|-.+..+--|++||+++.|+ ++||...+..   ++.++.  .+++-.+.+++.  +++++.++       -|+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------YDg   80 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------YDG   80 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------cCc
Confidence            35667777788888899999998887 6999987653   344443  356777777774  45555554       599


Q ss_pred             eEEEEECCCCCEEEEEE---cCCceeEEEEcCC--eEE--EEE-CCeEEEEECCCC-e-eeeeecCCCCCceEEEEeeCC
Q 019672           76 RLCLFNTTTGTALRELN---FLTSILAVRLNKK--RLV--IVL-REKTYIYDANTL-A-ILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~--~~~--v~~-d~~i~i~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      +|.||.-++++-...+.   |...|.+|++.|.  +++  ++. ||+|.|.+.+.. . ....+. ..++.++.+++..|
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswap  159 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAP  159 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-hccccccceeeecC
Confidence            99999999886544433   3458999998654  333  333 999999988654 1 111121 12345565555544


Q ss_pred             C---c-----------cEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCC----CEEEEEeCCCcEEE
Q 019672          146 N---A-----------CFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNG----MYIATASEQGTIIR  200 (337)
Q Consensus       146 ~---~-----------~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg----~~lat~s~dg~~i~  200 (337)
                      .   +           ..|+++|.  |..|+||+..+..-       .|..-|+.++|.|.-    .+||++|+||++| 
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgGc--Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi-  236 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGGC--DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI-  236 (299)
T ss_pred             cCCCccccccCcccccceeeccCC--ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE-
Confidence            3   2           45888885  89999999887431       255889999999963    4799999999975 


Q ss_pred             EEEcCCC--ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          201 VFLVSEA--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       201 vwd~~~~--~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ||-....  +-..++.. ..+..++.++||+.|.   +|++++.|+.|.+|.-..
T Consensus       237 Iwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEEecCccCcccccccc-cCCcceEEEEEecccc---EEEEecCCcEEEEEEeCC
Confidence            9976522  11122211 1355699999999999   999999999999997543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.78  E-value=1.2e-17  Score=140.50  Aligned_cols=234  Identities=12%  Similarity=0.132  Sum_probs=178.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .|-++|+++.|+|..+.|++|+.|+ +++||...-.  ..+.  .+.+.+..+.+.+.+.+++...       ...++++
T Consensus       170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-------dHp~~rl  242 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-------DHPTLRL  242 (430)
T ss_pred             hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-------CCCceeE
Confidence            3668999999999999999999876 6999976532  1111  1235667777766667665443       3689999


Q ss_pred             EECCCCCEEEEE----EcCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           80 FNTTTGTALREL----NFLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        80 wd~~~~~~~~~~----~~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      ||+.+-++...-    .+...|+++.+++..-+-+  + ||.|++||--..+.+.++....+...+|+.-+..++.++.+
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            999998776543    3455899999987654333  3 99999999888888888866556667888888889999999


Q ss_pred             cCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          153 PASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      +|  .|..|++|.+.+++.+..          .--+...|+....++..-.+....+.-||.+++..+..+..+| ...+
T Consensus       323 SG--~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~  399 (430)
T KOG0640|consen  323 SG--KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAV  399 (430)
T ss_pred             cC--CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCc
Confidence            98  499999999999887643          1234456777777777665544445789999998877776664 6678


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      ..+.-||.+.   -+.++|.|..+++|--
T Consensus       400 R~i~HSP~~p---~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  400 RWIVHSPVEP---AFMTCSDDFRARFWYR  425 (430)
T ss_pred             eEEEeCCCCC---ceeeecccceeeeeee
Confidence            9999999999   9999999999999963

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=1e-16  Score=150.22  Aligned_cols=224  Identities=14%  Similarity=0.148  Sum_probs=165.4

Q ss_pred             CCeEEEEEcCCC-----CEEEEEcCCc-eEEEeCCCCcE-EEEE-------eeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            8 YPVFFVSFNQDN-----SGFALSTKDG-FKIFDSSTGRL-CYER-------AVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         8 ~~v~~~~fs~dg-----~~la~g~~~g-~~vw~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      .+|..++|..+-     ..+++.-++. .+.|+..+... .+..       ....+..+++.+.+|+..+..       +
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-------S  468 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-------S  468 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec-------c
Confidence            467777775422     3344444444 48999876543 2222       124456677778888765543       4


Q ss_pred             CceEEEEECCCCCEEEEE----EcCCceeEEEEcC-CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           74 PRRLCLFNTTTGTALREL----NFLTSILAVRLNK-KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~----~~~~~v~~i~~~~-~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      .|+|.++|++.|-...++    .+..+|++++++. ++++++.  +|-+.+||++...++..++.......   +..+..
T Consensus       469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~---iv~hr~  545 (910)
T KOG1539|consen  469 KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITG---IVYHRV  545 (910)
T ss_pred             CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcce---eeeeeh
Confidence            789999999999877777    5667999999975 3344433  89999999998888877765433222   222333


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                      ...+|.+-  .|-.|.++|+.+.+.+     |.+.|+.++|||||++|++++.|++ ||+||+.++.++-.+..   ..+
T Consensus       546 s~l~a~~~--ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt~~lID~~~v---d~~  619 (910)
T KOG1539|consen  546 SDLLAIAL--DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPTGTLIDGLLV---DSP  619 (910)
T ss_pred             hhhhhhhc--CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccCcceeeeEec---CCc
Confidence            33555554  4788999999988765     4589999999999999999999998 79999999999887743   456


Q ss_pred             EEEEEeecCCCcccEEEEEeCC-CcEEEEe
Q 019672          222 IFSLSFGQSMQFQDILVATSSS-GSLHVFS  250 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~d-g~v~iw~  250 (337)
                      ..+|.|||+|.   +||+...| .-|++|-
T Consensus       620 ~~sls~SPngD---~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  620 CTSLSFSPNGD---FLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeEECCCCC---EEEEEEecCceEEEEE
Confidence            88999999999   99999999 5599996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.3e-16  Score=134.75  Aligned_cols=281  Identities=10%  Similarity=0.123  Sum_probs=188.9

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|+..|+.++-......+.+++.|.. +||.+++++.+..+.+  +.+..+.+..+..+++..+|       |.+..|
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG-------D~taHI  216 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG-------DETAHI  216 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC-------CcchHH
Confidence            3578899999988777677777777765 9999999998877654  45555555444444444443       888888


Q ss_pred             EEC----CCCC------------------------------------EEEEEEcCC-ceeEEEE--cCCeEEEEE-CCeE
Q 019672           80 FNT----TTGT------------------------------------ALRELNFLT-SILAVRL--NKKRLVIVL-REKT  115 (337)
Q Consensus        80 wd~----~~~~------------------------------------~~~~~~~~~-~v~~i~~--~~~~~~v~~-d~~i  115 (337)
                      |..    +..+                                    +++.+..+. .|.+..|  ..+.++.++ |.+.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            861    1100                                    122222222 3333333  345556666 9999


Q ss_pred             EEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc------ccccCceEEEEeCCCCCEE
Q 019672          116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH------SHCEAPLAAIVLSSNGMYI  189 (337)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~------~~~~~~i~~~~~s~dg~~l  189 (337)
                      .+||++++++++.+..+.+.  +.-.+.+|...++++++  .|-+.++||.+..-      ..|+..|+++.|..|. .+
T Consensus       297 nlwDVEtge~v~~LtGHd~E--LtHcstHptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v  371 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSE--LTHCSTHPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV  371 (481)
T ss_pred             eeeeeccCceeccccCcchh--ccccccCCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence            99999999999999877664  33334566666777776  48999999987432      2355899999999885 58


Q ss_pred             EEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672          190 ATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  268 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~  268 (337)
                      ++||+|.+ |+|||+++.. .+.+++.   ..+++.++.|..++   .+|.--++..|++||+....-++- ++++. . 
T Consensus       372 VSgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~---iIAiPhDNRqvRlfDlnG~RlaRl-PrtsR-q-  441 (481)
T KOG0300|consen  372 VSGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHP---IIAIPHDNRQVRLFDLNGNRLARL-PRTSR-Q-  441 (481)
T ss_pred             eecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCc---eEEeccCCceEEEEecCCCccccC-Ccccc-c-
Confidence            99999987 6999999875 4556643   35688999998888   888888888899999986544331 11100 0 


Q ss_pred             ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ..---.+.+.|...            +....|++.+.|..+.-|++..-
T Consensus       442 gHrRMV~c~AW~ee------------hp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  442 GHRRMVTCCAWLEE------------HPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccceeeeeeecccc------------CcccccccccccceeeeeEeccc
Confidence            00001123445432            22266889999999999988654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=1e-16  Score=147.94  Aligned_cols=233  Identities=12%  Similarity=0.110  Sum_probs=166.0

Q ss_pred             EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCC----eE-EEEE-CCeEEEEECC
Q 019672           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKK----RL-VIVL-REKTYIYDAN  121 (337)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~----~~-~v~~-d~~i~i~d~~  121 (337)
                      +..+++.++...++  +|.     .-|+++|+|+..-+....++. .++|.++.++.-    .+ +.++ |.-|+|||+.
T Consensus       462 ~R~~~vSp~gqhLA--sGD-----r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLA--SGD-----RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             eEEEEECCCcceec--ccC-----ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            44555555555544  332     347999999998887777764 458999998642    23 3333 7789999995


Q ss_pred             C-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC----Ccc-------cccCceEEEEeCCCCCEE
Q 019672          122 T-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME----LHS-------HCEAPLAAIVLSSNGMYI  189 (337)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~----~~~-------~~~~~i~~~~~s~dg~~l  189 (337)
                      . ..+++++..|......+-|+.++-+..++++|.  |..|. |+...    +..       ..+..+..+++.|..+++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGA--Dksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA--DKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccC--chhhh-eehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence            4 456677776555444444555555577888884  66544 33322    211       112779999999999999


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccc
Q 019672          190 ATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  268 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~  268 (337)
                      ++++.|.. |||||+++|+..+.|+..+.. +..--+...|.|-   |||+...|.++.++|.-.++-..          
T Consensus       612 ~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi---Y~atScsdktl~~~Df~sgEcvA----------  677 (1080)
T KOG1408|consen  612 VTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI---YLATSCSDKTLCFVDFVSGECVA----------  677 (1080)
T ss_pred             EEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCcc---EEEEeecCCceEEEEeccchhhh----------
Confidence            99999987 799999999999999643322 3455578899999   99999999999999987665432          


Q ss_pred             ccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          269 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       269 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                                 ...+|.+++.-+.|.+|-+.|++.+.||.|.+|.+..
T Consensus       678 -----------~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  678 -----------QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             -----------hhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence                       2233445555666677789999999999999999965

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=5.5e-17  Score=132.45  Aligned_cols=232  Identities=12%  Similarity=0.131  Sum_probs=157.8

Q ss_pred             EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC---EEEEEEc-CCceeEEEEc-CC-eEEE--EE-CCeEEEEECCCC
Q 019672           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELNF-LTSILAVRLN-KK-RLVI--VL-REKTYIYDANTL  123 (337)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~---~~~~~~~-~~~v~~i~~~-~~-~~~v--~~-d~~i~i~d~~~~  123 (337)
                      .+.|.+..++.++.       |++|+|+..+.+.   ++.++.. .+||..+.|. |. +-++  +. |++|.||.-.++
T Consensus        18 ~lDyygkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g   90 (299)
T KOG1332|consen   18 QLDYYGKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG   90 (299)
T ss_pred             hhhhhcceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC
Confidence            45566777777764       9999999987654   4556654 4599999984 33 3333  33 999999998777


Q ss_pred             ee--eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC-c-------ccccCceEEEEeCCC---C----
Q 019672          124 AI--LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H-------SHCEAPLAAIVLSSN---G----  186 (337)
Q Consensus       124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~-~-------~~~~~~i~~~~~s~d---g----  186 (337)
                      +-  ......+......++++|+.-+..||++++  ||.|.|.+.+.. .       ..|+-.|++++|.|-   |    
T Consensus        91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasS--DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~  168 (299)
T KOG1332|consen   91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS--DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD  168 (299)
T ss_pred             chhhhhhhhhhcccceeecccccccceEEEEeeC--CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence            32  222333444445567788888888998884  999999887654 1       124577999999986   6    


Q ss_pred             -------CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC-cccEEEEEeCCCcEEEEecCCCcccC
Q 019672          187 -------MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ-FQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       187 -------~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~-~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                             +.||+|+.|.. ++||+..+++-+.+-....|..-|..++|.|.-. -..+||++|.||+|-||-.+...++-
T Consensus       169 ~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  169 QGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             cCcccccceeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                   67999999986 6999998874322111223455689999998741 11279999999999999877443322


Q ss_pred             CCCcccccccccccccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          259 RGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       259 ~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      +    ...+ ...|..+ .-.|++.              ++.|.+++.|+.+.+|.
T Consensus       248 k----~tll-~~f~~~~w~vSWS~s--------------Gn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  248 K----KTLL-EEFPDVVWRVSWSLS--------------GNILAVSGGDNKVTLWK  284 (299)
T ss_pred             c----cccc-ccCCcceEEEEEecc--------------ccEEEEecCCcEEEEEE
Confidence            1    1111 1123222 2345444              38899999999999994

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.76  E-value=1.4e-17  Score=148.17  Aligned_cols=227  Identities=11%  Similarity=0.109  Sum_probs=173.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--e--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--V--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .++-|+++...|||+.|++|++-. +.|||+..-......+  .  .....+++.++.+.... .      +.|+.|.||
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-c------csdGnI~vw  536 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-C------CSDGNIAVW  536 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-e------ccCCcEEEE
Confidence            456689999999999999998854 6999987654433222  2  22233445555554333 3      259999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+.....++.+..+. .+.+|.+++++  +...+ |++++.||++.++.+.+.+..   ..+.++...|.+.++|++=  
T Consensus       537 DLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~---SQIfSLg~cP~~dWlavGM--  611 (705)
T KOG0639|consen  537 DLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS---SQIFSLGYCPTGDWLAVGM--  611 (705)
T ss_pred             EcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh---hhheecccCCCccceeeec--
Confidence            999999999887655 68888888654  55554 999999999998766554432   3477788888888999875  


Q ss_pred             CccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          157 TKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +.+.|.|........    +|++-|.++.|.+-|+++++.+.|.- +..|.+.-|..+...+.   ...|.|+..|.|.+
T Consensus       612 ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqskE---~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKE---SSSVLSCDISFDDK  687 (705)
T ss_pred             ccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeeccc---cCcceeeeeccCce
Confidence            578888887765432    24488999999999999999999974 68999999998877643   45799999999999


Q ss_pred             cccEEEEEeCCCcEEEEec
Q 019672          233 FQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l  251 (337)
                         ++++||.|....||.+
T Consensus       688 ---yIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  688 ---YIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---EEEecCCCcceEEEEE
Confidence               9999999999988875

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=9.2e-18  Score=156.04  Aligned_cols=234  Identities=12%  Similarity=0.107  Sum_probs=158.6

Q ss_pred             eEEEEEcC-CCCEEEEEcCCce-EEEeCCC---CcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672           10 VFFVSFNQ-DNSGFALSTKDGF-KIFDSST---GRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus        10 v~~~~fs~-dg~~la~g~~~g~-~vw~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +..++|++ +.++||+++.+|+ .+||+..   .++++....|  .+-.+++......++ ++|+     .|++|++||+
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~il-iSGS-----QDg~vK~~Dl  163 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNIL-ISGS-----QDGTVKCWDL  163 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEE-EecC-----CCceEEEEee
Confidence            34456764 4567999998885 9999976   3444333333  333444322223333 3442     6999999999


Q ss_pred             CCCCEEEEEEcCC-ceeEEEEcC---CeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           83 TTGTALRELNFLT-SILAVRLNK---KRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        83 ~~~~~~~~~~~~~-~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      +..+...++...+ .|++++|++   +.++.+. .|.+.+||++.... ...+..|  ...+.++.++|++.+||++|  
T Consensus       164 R~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGG--  239 (839)
T KOG0269|consen  164 RSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGG--  239 (839)
T ss_pred             ecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecC--
Confidence            9888777665554 799999975   3444444 57999999987643 3344433  34577888899999999999  


Q ss_pred             CccEEEEEEccCCccc--c---c-CceEEEEeCCCCC-EEEEEeC-CCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          157 TKGSVLVYNVMELHSH--C---E-APLAAIVLSSNGM-YIATASE-QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~--~---~-~~i~~~~~s~dg~-~lat~s~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .|+.|+|||+.+.+..  +   + .||.+|.|-|+-. .||+++. +.+-|+|||++..-..+..-. .|...++.++|-
T Consensus       240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-eH~~~vt~i~W~  318 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-EHTDSVTGIAWD  318 (839)
T ss_pred             CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-ccCccccceecc
Confidence            4999999999866542  2   2 8999999999765 5776653 223479999987655443322 245568889997


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ....  ..|.+++.||+|..-.++....
T Consensus       319 ~~d~--~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  319 SGDR--INLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             CCCc--eeeEeecCccHHHHhhhhcccC
Confidence            5333  3899999999985555444433

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=4.2e-16  Score=132.03  Aligned_cols=234  Identities=14%  Similarity=0.119  Sum_probs=151.9

Q ss_pred             eEEEEEcCCCCEEEEEcCC-ceEEEeCCCC--------c------EEEEEeeCC-EEEEEE-------ccCCCEEEEEeC
Q 019672           10 VFFVSFNQDNSGFALSTKD-GFKIFDSSTG--------R------LCYERAVGA-FSIVEM-------LYSSSLLAIVGA   66 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~-g~~vw~~~~~--------~------~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~   66 (337)
                      .-.+.|+|||++|++-+.+ ++++|++..-        .      ..+....+. +...++       .++.++.+. +.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~-ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV-SS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee-cc
Confidence            5567999999998877764 5799986321        1      111111122 211111       123344443 33


Q ss_pred             CCCCCCCCceEEEEECCCCCEEEEEEc---CC---ceeEEEEcCCeE-EEEE-CCeEEEEEC-CCCeeeeeecC--C--C
Q 019672           67 GEQPSLSPRRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRL-VIVL-REKTYIYDA-NTLAILDTIDT--V--P  133 (337)
Q Consensus        67 g~~~~~~d~~v~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~-~v~~-d~~i~i~d~-~~~~~~~~~~~--~--~  133 (337)
                            .+.-|++||.-+|+..+.+..   -.   ...++.|++++- +.++ ...|++||+ +.+.-.....+  +  .
T Consensus       131 ------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  131 ------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             ------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence                  589999999999998876532   22   345688888753 3344 779999999 55532222211  1  1


Q ss_pred             C-CceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          134 N-LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       134 ~-~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      . ..-+.+++++|-.. .+|++++  ...+-||.-..+...     |.+.|+.+.|.+||+.|.+|+....-|-.||++.
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY--~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSY--GQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecc--cceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            1 22345777777655 7787775  566777765555443     4589999999999999999997554577999975


Q ss_pred             -CceeEeeccCCc--ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          207 -ATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       207 -~~~~~~~~~~~~--~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                       ++.+..+.++..  ...|. ....|+|+   +||+|+.||.|++||+++..+
T Consensus       283 ~~~pv~~L~rhv~~TNQRI~-FDld~~~~---~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  283 SRDPVYALERHVGDTNQRIL-FDLDPKGE---ILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             ccchhhhhhhhccCccceEE-EecCCCCc---eeeccCCCccEEEEecCCCCC
Confidence             455666655433  12333 34458998   999999999999999988655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=6.6e-16  Score=130.03  Aligned_cols=238  Identities=18%  Similarity=0.211  Sum_probs=154.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC----cEEEEEeeCCEEEEE--EccCC--CEEEEEeCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RLCYERAVGAFSIVE--MLYSS--SLLAIVGAGEQPSLS   73 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~----~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~g~~~~~~   73 (337)
                      ++.|+.-|.++.|++-|+.+|+|+.|+ ++|||....    ...-....++-.+..  +++..  ..++.++       .
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-------~   81 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-------Y   81 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-------c
Confidence            456778899999999999999998876 799996433    333333344444444  44332  4555555       4


Q ss_pred             CceEEEEECCCC-------CEEE--EE-EcCCceeEEEEcCCeE--E--EEE-CCeEEEEECCCCe------eeeeec--
Q 019672           74 PRRLCLFNTTTG-------TALR--EL-NFLTSILAVRLNKKRL--V--IVL-REKTYIYDANTLA------ILDTID--  130 (337)
Q Consensus        74 d~~v~iwd~~~~-------~~~~--~~-~~~~~v~~i~~~~~~~--~--v~~-d~~i~i~d~~~~~------~~~~~~--  130 (337)
                      |++++||.-...       +-+.  ++ .-.+.|++|.|.|.++  .  .+. ||.++||+..+.-      +.+++.  
T Consensus        82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~  161 (361)
T KOG2445|consen   82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV  161 (361)
T ss_pred             CCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence            999999975211       1111  22 2345899999987642  2  233 9999999875432      223332  


Q ss_pred             --CCCC-CceEEEEeeCCC---ccEEEEcCCC---CccEEEEEEccCCc-c--------cccCceEEEEeCCC----CCE
Q 019672          131 --TVPN-LKGLCAFSPSLN---ACFLAVPAST---TKGSVLVYNVMELH-S--------HCEAPLAAIVLSSN----GMY  188 (337)
Q Consensus       131 --~~~~-~~~~~~~~~~~~---~~~la~~~~~---~dg~v~i~d~~~~~-~--------~~~~~i~~~~~s~d----g~~  188 (337)
                        ++.. .....|+++++.   .+++|.+...   .-+.++||...... .        .++.+|+.++|.|+    -.+
T Consensus       162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~  241 (361)
T KOG2445|consen  162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL  241 (361)
T ss_pred             cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence              1111 122345555542   3467766520   12478999765433 1        13489999999995    347


Q ss_pred             EEEEeCCCcEEEEEEcCCCc-----------------eeEeec-cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          189 IATASEQGTIIRVFLVSEAT-----------------KSYSFR-RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       189 lat~s~dg~~i~vwd~~~~~-----------------~~~~~~-~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ||+|+.||  |+||.++.-.                 .+..+. ...|.++|..+.|+-.|.   .|+++++||.|++|.
T Consensus       242 lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt---iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  242 LAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT---ILSSTGDDGCVRLWK  316 (361)
T ss_pred             EEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee---EEeecCCCceeeehh
Confidence            99999999  5999997311                 011111 234577899999999999   999999999999998


Q ss_pred             cC
Q 019672          251 PG  252 (337)
Q Consensus       251 l~  252 (337)
                      ..
T Consensus       317 an  318 (361)
T KOG2445|consen  317 AN  318 (361)
T ss_pred             hh
Confidence            54

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.7e-18  Score=158.45  Aligned_cols=222  Identities=11%  Similarity=0.109  Sum_probs=169.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .|...|.|+..-..++.+++|+.+.. .+|.+..-.-+..+.+  .++..+.  ++..-..+..|     ..+++|++||
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~--f~~~E~Llaag-----sasgtiK~wD   98 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT--FDTSERLLAAG-----SASGTIKVWD   98 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee--cCcchhhhccc-----ccCCceeeee
Confidence            45566788888677788888888764 6898654433333333  4444444  44433333333     3699999999


Q ss_pred             CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      ++..+.++++..+- ++..+.|+|..-+.+.   |..+.+||++...+.+.+..+  ...+-.+.+.|++.+++.++  +
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~--e  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGG--E  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC--cceeEEEeecCCCceeeccC--C
Confidence            99999888876654 8999999998777644   889999999988888888764  44555667778899999988  5


Q ss_pred             ccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          158 KGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       158 dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      |.+++|||+..++..     |+..+.++.|+|..-++++||.|++ +++||+++.+.+.....  ....|.+++|+|++.
T Consensus       175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~  251 (825)
T KOG0267|consen  175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGK  251 (825)
T ss_pred             cceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCce
Confidence            899999999888766     4488999999999999999999998 69999999888766532  245699999999998


Q ss_pred             cccEEEEEeCC
Q 019672          233 FQDILVATSSS  243 (337)
Q Consensus       233 ~~~~las~s~d  243 (337)
                         .+++|-..
T Consensus       252 ---~~~~G~q~  259 (825)
T KOG0267|consen  252 ---IVLSGEQI  259 (825)
T ss_pred             ---eeecCchh
Confidence               77776555

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.8e-18  Score=159.67  Aligned_cols=172  Identities=14%  Similarity=0.227  Sum_probs=141.0

Q ss_pred             CCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           73 SPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      .|..+-+|.......+..+. +..+|.++.|+....+++.   +++|++||+...+.++++..+..  .++.+.++|-+.
T Consensus        48 ~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~  125 (825)
T KOG0267|consen   48 EDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGE  125 (825)
T ss_pred             CceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceE
Confidence            68899999987766676654 4569999999876655543   88999999999988888865533  456667888888


Q ss_pred             EEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      +.|.++  .|..+.+||.+..-+.+.     ..|.++.|+|+|++++.|++|.+ ++|||+..|+.+.+|..  |...+.
T Consensus       126 ~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~  200 (825)
T KOG0267|consen  126 FFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQ  200 (825)
T ss_pred             Eecccc--ccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce-eeeeccccccccccccc--cccccc
Confidence            886655  699999999986554443     66999999999999999999986 79999999999999853  456799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ++.|+|..-   +|++||.|++|++||+++.
T Consensus       201 sle~hp~e~---Lla~Gs~d~tv~f~dletf  228 (825)
T KOG0267|consen  201 SLEFHPLEV---LLAPGSSDRTVRFWDLETF  228 (825)
T ss_pred             ccccCchhh---hhccCCCCceeeeecccee
Confidence            999999998   9999999999999999853

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=1.4e-16  Score=139.92  Aligned_cols=229  Identities=10%  Similarity=0.120  Sum_probs=150.2

Q ss_pred             CCCEEEEEcCCc-eEEEeCCCCcEE---EEE------------------eeCCEEEEEEccCCCE-EEEEeCCCCCCCCC
Q 019672           18 DNSGFALSTKDG-FKIFDSSTGRLC---YER------------------AVGAFSIVEMLYSSSL-LAIVGAGEQPSLSP   74 (337)
Q Consensus        18 dg~~la~g~~~g-~~vw~~~~~~~~---~~~------------------~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~d   74 (337)
                      .|+++|+|+-+. +.|||++-...+   ..+                  ++|.-.+..+++..+. -++++|+     .|
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-----aD  265 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-----AD  265 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----CC
Confidence            467999999887 599997643111   000                  0111122344444322 2345553     79


Q ss_pred             ceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe---EEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCcc
Q 019672           75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      ++|++||+.++++...+.++ .+|.++.|++..   ++.++ |+++.++|.+... .-..++.... ....++.++... 
T Consensus       266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~-VEkv~w~~~se~-  343 (463)
T KOG0270|consen  266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE-VEKVAWDPHSEN-  343 (463)
T ss_pred             ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-eEEEEecCCCce-
Confidence            99999999999999999855 489999998754   33333 8999999998431 1122222222 233455554443 


Q ss_pred             EEEEcCCCCccEEEEEEccCCc-c-----cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee
Q 019672          149 FLAVPASTTKGSVLVYNVMELH-S-----HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~-~-----~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                       .+.++. .||.|+-+|+++.. .     .|..+|.+|++++. -.+++|+|.|+. +++|++..-..-....+...-..
T Consensus       344 -~f~~~t-ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~r  420 (463)
T KOG0270|consen  344 -SFFVST-DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGR  420 (463)
T ss_pred             -eEEEec-CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccc
Confidence             333343 59999999999873 2     35699999999985 458999999997 69999865433211111112234


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      ..|.++.|+-.+  +||.|+..+.++|||+.+....+
T Consensus       421 l~c~~~~~~~a~--~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  421 LHCFALDPDVAF--TLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eeecccCCCcce--EEEecCccceEEEeecccChhHH
Confidence            778888898774  89999999999999998765544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.73  E-value=1.1e-15  Score=127.99  Aligned_cols=198  Identities=14%  Similarity=0.157  Sum_probs=134.4

Q ss_pred             eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC------EE----E--EEEcC----CceeEEEEcC--CeE
Q 019672           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT------AL----R--ELNFL----TSILAVRLNK--KRL  107 (337)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~------~~----~--~~~~~----~~v~~i~~~~--~~~  107 (337)
                      .+++..+.+..--..+.+ +||     +|+.+.+||++.-.      .+    +  ...++    -.|..+.|-|  .++
T Consensus        43 gGsvNsL~id~tegryml-SGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   43 GGSVNSLQIDLTEGRYML-SGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             CCccceeeeccccceEEe-ecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            344544454433333334 443     79999999997543      11    1  11111    1456665543  455


Q ss_pred             EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcccc-----cCceEE
Q 019672          108 VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAA  179 (337)
Q Consensus       108 ~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~  179 (337)
                      ++.+  |.+++|||.++.+....+..+.. ....++++-.- .+++|++.  .+-+|++.|+.++...|     +..|.+
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vla  193 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLA  193 (397)
T ss_pred             eecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEec--CCCcEEEEeccCCcceeeeccccCceEE
Confidence            5544  99999999999988777765322 22234444333 34566554  58899999999998654     488999


Q ss_pred             EEeCCCCC-EEEEEeCCCcEEEEEEcCCC-ceeEeec------------cCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          180 IVLSSNGM-YIATASEQGTIIRVFLVSEA-TKSYSFR------------RGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       180 ~~~s~dg~-~lat~s~dg~~i~vwd~~~~-~~~~~~~------------~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      +.|+|... .|||||.||+ ||+||++.- -++..+.            ...+.+.|+.++|+.||.   +|++.+.|..
T Consensus       194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---~l~~~gtd~r  269 (397)
T KOG4283|consen  194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---YLASCGTDDR  269 (397)
T ss_pred             EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---hhhhccCccc
Confidence            99999766 5889999998 699999754 2222221            223456799999999999   9999999999


Q ss_pred             EEEEecCCCcc
Q 019672          246 LHVFSPGFAIN  256 (337)
Q Consensus       246 v~iw~l~~~~~  256 (337)
                      +++|+...+.+
T Consensus       270 ~r~wn~~~G~n  280 (397)
T KOG4283|consen  270 IRVWNMESGRN  280 (397)
T ss_pred             eEEeecccCcc
Confidence            99999987654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.72  E-value=2.3e-16  Score=136.02  Aligned_cols=185  Identities=11%  Similarity=0.090  Sum_probs=125.4

Q ss_pred             CCeEEEEECCC----------------CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc----
Q 019672          112 REKTYIYDANT----------------LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS----  171 (337)
Q Consensus       112 d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~----  171 (337)
                      .|.|+|||+..                .+++.++..+......+++++...+ .|+++..  .+.|++|...++.-    
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~LlsGDc--~~~I~lw~~~~g~W~vd~  250 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-RLLSGDC--VKGIHLWEPSTGSWKVDQ  250 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-ccccCcc--ccceEeeeeccCceeecC
Confidence            68999999853                2334455444433333344442232 3555554  57799998877542    


Q ss_pred             ----cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          172 ----HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       172 ----~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                          .|+..|..++|||. ...||++|.||+ |||||++.+.+...+....|.+.|+.|.|+.+-.   +||+|++||++
T Consensus       251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~---lLasG~DdGt~  326 (440)
T KOG0302|consen  251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP---LLASGGDDGTL  326 (440)
T ss_pred             ccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEccCCcc---eeeecCCCceE
Confidence                25688999999995 458999999998 7999999985443333345567899999998888   99999999999


Q ss_pred             EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      +||||+..+...+    -..+...-....+-.|++..             ...+++++.|.++.+|+|..+...
T Consensus       327 ~iwDLR~~~~~~p----VA~fk~Hk~pItsieW~p~e-------------~s~iaasg~D~QitiWDlsvE~D~  383 (440)
T KOG0302|consen  327 SIWDLRQFKSGQP----VATFKYHKAPITSIEWHPHE-------------DSVIAASGEDNQITIWDLSVEADE  383 (440)
T ss_pred             EEEEhhhccCCCc----ceeEEeccCCeeEEEecccc-------------CceEEeccCCCcEEEEEeeccCCh
Confidence            9999987543211    00011111112233566643             256889999999999999877663

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.72  E-value=2.5e-15  Score=137.39  Aligned_cols=275  Identities=14%  Similarity=0.143  Sum_probs=170.3

Q ss_pred             EEEEEcC--CC-CEEEEEcCCc-eEEEeCCCCcEE------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672           11 FFVSFNQ--DN-SGFALSTKDG-FKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus        11 ~~~~fs~--dg-~~la~g~~~g-~~vw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ...+|++  .. ..||++-++| +.+||.......      .....|.-.+.++.+-+.-..+++.     +.|.++++|
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa-----sGDsT~r~W  127 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA-----SGDSTIRPW  127 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc-----cCCceeeee
Confidence            4567764  22 3488888877 599997665332      2223344455555444433333333     138999999


Q ss_pred             ECCCCCEEEE---EEcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCe--eeee----e----cC---CCC------
Q 019672           81 NTTTGTALRE---LNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA--ILDT----I----DT---VPN------  134 (337)
Q Consensus        81 d~~~~~~~~~---~~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~--~~~~----~----~~---~~~------  134 (337)
                      |+++++++..   +.|...|.+++|.+.   -++.++ |+.|.|||++-..  ....    +    .+   +..      
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999988865   455567888888653   333333 8999999996321  0000    0    00   000      


Q ss_pred             ------CceE---EEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----------c-----CceEEEEeCCCCCEE
Q 019672          135 ------LKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----------E-----APLAAIVLSSNGMYI  189 (337)
Q Consensus       135 ------~~~~---~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----------~-----~~i~~~~~s~dg~~l  189 (337)
                            ...+   +..-...|+..||++|. .|+.|+|||+++.....           .     ..+.++..+..|.+|
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             cccccccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence                  0011   11223356778999986 69999999998765321           1     457889999999998


Q ss_pred             EEEeCCCcEEEEEEcCCCce--eEeeccCCcce--eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc
Q 019672          190 ATASEQGTIIRVFLVSEATK--SYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS  265 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~--~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~  265 (337)
                      .+.+.|++ |..||+.+-..  +..+. +....  .|.+ ..|||+.   +|++|+.|..+.||.+.+...+..     .
T Consensus       287 ~AsCtD~s-Iy~ynm~s~s~sP~~~~s-g~~~~sf~vks-~lSpd~~---~l~SgSsd~~ayiw~vs~~e~~~~-----~  355 (720)
T KOG0321|consen  287 FASCTDNS-IYFYNMRSLSISPVAEFS-GKLNSSFYVKS-ELSPDDC---SLLSGSSDEQAYIWVVSSPEAPPA-----L  355 (720)
T ss_pred             EEEecCCc-EEEEeccccCcCchhhcc-Ccccceeeeee-ecCCCCc---eEeccCCCcceeeeeecCccCChh-----h
Confidence            88888998 67999976432  22221 11111  1333 5689999   999999999999999988765431     1


Q ss_pred             cccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          266 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       266 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                       +.+..-+.+.-.|.+..             -.-+++.+.|-.+++|++..
T Consensus       356 -l~Ght~eVt~V~w~pS~-------------~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  356 -LLGHTREVTTVRWLPSA-------------TTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             -hhCcceEEEEEeecccc-------------CCCceeeccCcceEEEeccC
Confidence             11111112222344422             13477779999999999943

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.72  E-value=9.7e-16  Score=135.10  Aligned_cols=237  Identities=12%  Similarity=0.151  Sum_probs=156.7

Q ss_pred             CCCCCeEEEEEcCCCC--EEEEEcCCc-eEEEeCCCCc------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            5 SSSYPVFFVSFNQDNS--GFALSTKDG-FKIFDSSTGR------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~--~la~g~~~g-~~vw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      ....+|++++|+|...  ++|+|...| +-+||+.+.+      .++..+..++..+.+.+...-.++.+.      .||
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS------yDG  257 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS------YDG  257 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec------cCc
Confidence            3567899999999876  567777766 6999995332      233344445666666554443444443      599


Q ss_pred             eEEEEECCCCCEEEEEEc--CC-ceeEEEEcC-CeEEEEEC--CeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCcc
Q 019672           76 RLCLFNTTTGTALRELNF--LT-SILAVRLNK-KRLVIVLR--EKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~--~~-~v~~i~~~~-~~~~v~~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      +|++=|++++....-+..  .. -...+.++. +..++..+  |...+||+++++. ...+..+..  .++.++.+|...
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p  335 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCP  335 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCc
Confidence            999999987642222221  11 233444533 33333332  4789999987754 444454443  677777777655


Q ss_pred             -EEEEcCCCCccEEEEEEccCCcc---------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc----CCCceeEeec
Q 019672          149 -FLAVPASTTKGSVLVYNVMELHS---------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLV----SEATKSYSFR  214 (337)
Q Consensus       149 -~la~~~~~~dg~v~i~d~~~~~~---------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~----~~~~~~~~~~  214 (337)
                       ++|+++  .|++++|||++....         .|+.+|++..|||+|-.|+|.+.|.. |||||.    ..-+.+.++.
T Consensus       336 ~~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  336 WFLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             hheeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceee
Confidence             466666  699999999986532         14488999999999888999999987 799998    3333334443


Q ss_pred             cCCcce---eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          215 RGTYPS---TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       215 ~~~~~~---~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ......   ...-.+|.||..   ++++|-.-..|-|||-..+.
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~~---li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDYN---LIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             ccCcccccccchhheeCCCcc---EEEEeccCcceeEEcCCCCE
Confidence            221111   234468999988   99999999999999966544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=1.1e-15  Score=129.23  Aligned_cols=237  Identities=10%  Similarity=0.108  Sum_probs=156.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCce-EEEe------CCC--------Cc-EE--EEEe-----------eCCE--EEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFD------SST--------GR-LC--YERA-----------VGAF--SIV   52 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~------~~~--------~~-~~--~~~~-----------~~~~--~~~   52 (337)
                      ++|.+.|+|++|++.+.++++++.|+- .||.      +..        ++ ..  ...+           .+.+  ..+
T Consensus       187 ~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~  266 (481)
T KOG0300|consen  187 TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLM  266 (481)
T ss_pred             cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeee
Confidence            478899999999999999999988875 7885      111        01 00  0000           0011  111


Q ss_pred             ------------EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEE
Q 019672           53 ------------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTY  116 (337)
Q Consensus        53 ------------~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~  116 (337)
                                  +++-.+..  ++.     .+.|++..+||+++|+.+..+..+. +.+-+.-+|...++.+   |.+.+
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q--~vT-----aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQ--MVT-----ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeccccceEehhhhcCcce--eee-----eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence                        11111112  222     2589999999999999998876554 5555566665544443   78999


Q ss_pred             EEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEE
Q 019672          117 IYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIA  190 (337)
Q Consensus       117 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~la  190 (337)
                      +||++.. ..+..|+.+.+  .+.+..++-+. .+++++  .|.+|+|||+++++...     .++++.++++..+..||
T Consensus       340 LWDFReaI~sV~VFQGHtd--tVTS~vF~~dd-~vVSgS--DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIA  414 (481)
T KOG0300|consen  340 LWDFREAIQSVAVFQGHTD--TVTSVVFNTDD-RVVSGS--DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIA  414 (481)
T ss_pred             eccchhhcceeeeeccccc--ceeEEEEecCC-ceeecC--CCceEEEeeeccccCcceeeecCCccceeEeecCCceEE
Confidence            9999843 33455665544  45555554433 344444  59999999999887532     28999999998888887


Q ss_pred             EEeCCCcEEEEEEcCCCceeEeecc---CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          191 TASEQGTIIRVFLVSEATKSYSFRR---GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       191 t~s~dg~~i~vwd~~~~~~~~~~~~---~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      .--+.. .||+||+. |..+.++.+   ..|...|.|++|..+-.. .-|++++.|..+.=|++..+.
T Consensus       415 iPhDNR-qvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~-cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  415 IPHDNR-QVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPA-CNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             eccCCc-eEEEEecC-CCccccCCcccccccceeeeeeeccccCcc-cccccccccceeeeeEecccC
Confidence            766555 58999995 555555542   224557999999854321 248899999999999987653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=5.1e-14  Score=127.51  Aligned_cols=264  Identities=11%  Similarity=0.069  Sum_probs=161.4

Q ss_pred             EcCCceEEEeCCC-CcE--EEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-CCCE--EEEEEcCCce
Q 019672           25 STKDGFKIFDSST-GRL--CYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTA--LRELNFLTSI   97 (337)
Q Consensus        25 g~~~g~~vw~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-~~~~--~~~~~~~~~v   97 (337)
                      +.++++.+|++.+ +++  +.... .+....+.+.++.+.+..++.      .++.|.+|++. +++.  +.........
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            4456689999864 442  22222 233445566777776655443      47899999986 3433  2333444456


Q ss_pred             eEEEEcCCe--EEEEE--CCeEEEEECCC-Ce---eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672           98 LAVRLNKKR--LVIVL--REKTYIYDANT-LA---ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (337)
Q Consensus        98 ~~i~~~~~~--~~v~~--d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~  169 (337)
                      ..+.+++++  ++++.  ++.|.+|++.+ +.   .+..+....+   ...+..+|++.++++++. .++.|.+||+.+.
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~  158 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG---CHSANIDPDNRTLWVPCL-KEDRIRLFTLSDD  158 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc---ccEeEeCCCCCEEEEeeC-CCCEEEEEEECCC
Confidence            778888654  55555  78999999963 22   2222222222   233455677778776665 5899999999763


Q ss_pred             cccc-----------cCceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCC--Cc--eeEeeccCC----cceeEEEEEeec
Q 019672          170 HSHC-----------EAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSE--AT--KSYSFRRGT----YPSTIFSLSFGQ  229 (337)
Q Consensus       170 ~~~~-----------~~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~--~~--~~~~~~~~~----~~~~i~~l~fs~  229 (337)
                      ..+.           ......++|+|||++++++++ +++ |.+|++..  ++  .+.++....    .......+.|+|
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            2211           134578999999999988887 555 78999973  32  233332110    111133588999


Q ss_pred             CCCcccEEEEEe-CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe-CC
Q 019672          230 SMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NG  307 (337)
Q Consensus       230 dg~~~~~las~s-~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-dg  307 (337)
                      ||+   +|.++. .+++|.+|+++......      .+.+ ..+.    -+.+.       .+.+.+++++|++++. +|
T Consensus       238 dg~---~lyv~~~~~~~I~v~~i~~~~~~~------~~~~-~~~~----~~~p~-------~~~~~~dg~~l~va~~~~~  296 (330)
T PRK11028        238 DGR---HLYACDRTASLISVFSVSEDGSVL------SFEG-HQPT----ETQPR-------GFNIDHSGKYLIAAGQKSH  296 (330)
T ss_pred             CCC---EEEEecCCCCeEEEEEEeCCCCeE------EEeE-EEec----cccCC-------ceEECCCCCEEEEEEccCC
Confidence            999   888874 47899999996543211      1111 1110    00110       1233567789998876 99


Q ss_pred             cEEEEEEecCCCC
Q 019672          308 YFVEYIFSINNCC  320 (337)
Q Consensus       308 ~~~~~~~~~~~~~  320 (337)
                      ++.+|.++.+.+.
T Consensus       297 ~v~v~~~~~~~g~  309 (330)
T PRK11028        297 HISVYEIDGETGL  309 (330)
T ss_pred             cEEEEEEcCCCCc
Confidence            9999999877664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.71  E-value=1.8e-15  Score=139.40  Aligned_cols=218  Identities=12%  Similarity=0.130  Sum_probs=154.7

Q ss_pred             EEEc-CCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           13 VSFN-QDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        13 ~~fs-~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      +.+- .|+-.+.+|+.|+. .+|.+.+...++...+|...++++.-..... +++|     +.|.++++|-.  +++...
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg-----SWD~TakvW~~--~~l~~~  135 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG-----SWDSTAKVWRI--GELVYS  135 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec-----ccccceEEecc--hhhhcc
Confidence            4554 34455788888875 8999999988887766655555544223333 5565     48999999964  344444


Q ss_pred             EE-cCCceeEEEEcCCeEEE-EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc
Q 019672           91 LN-FLTSILAVRLNKKRLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus        91 ~~-~~~~v~~i~~~~~~~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~  167 (337)
                      +. |...|.++..-+...++ ++ |.+|++|.-  ++.++++..|.+...  +++.-+++ .+++++  .||.|+.|++.
T Consensus       136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VR--gL~vl~~~-~flScs--NDg~Ir~w~~~  208 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVR--GLAVLDDS-HFLSCS--NDGSIRLWDLD  208 (745)
T ss_pred             cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhhee--eeEEecCC-CeEeec--CCceEEEEecc
Confidence            44 44589888765544444 33 899999974  677888887655433  33333333 456666  59999999994


Q ss_pred             CCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          168 ELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       168 ~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                      ....    .|++-|.+++..+++..++++++|++ +|||+..  ++.+.+...  ...|+++.+-++|.    +++|+.|
T Consensus       209 ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD----Ivvg~SD  279 (745)
T KOG0301|consen  209 GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD----IVVGGSD  279 (745)
T ss_pred             CceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEecC--ccceEEEEEeeCCC----EEEeccC
Confidence            3322    25588999998888889999999998 6999976  666666432  22589999999997    9999999


Q ss_pred             CcEEEEecCCC
Q 019672          244 GSLHVFSPGFA  254 (337)
Q Consensus       244 g~v~iw~l~~~  254 (337)
                      |.|+||..++.
T Consensus       280 G~VrVfT~~k~  290 (745)
T KOG0301|consen  280 GRVRVFTVDKD  290 (745)
T ss_pred             ceEEEEEeccc
Confidence            99999987654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.2e-15  Score=125.84  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=154.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc--eEEEeCCCC---cEEEE--------E-eeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDG--FKIFDSSTG---RLCYE--------R-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g--~~vw~~~~~---~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      .-+.+.|.||-+-+++....|  +++|-+...   ..-+.        . ..+.+.++.+--..+...+.+.     +.|
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa-----s~d  208 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA-----SLD  208 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEe-----cCC
Confidence            457889999999877666544  688865432   21111        0 1133344433222332223333     258


Q ss_pred             ceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE---CCeEEEEEC---CCC---eeeeeecCCCCCceEEEEeeC
Q 019672           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDA---NTL---AILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~---d~~i~i~d~---~~~---~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      .+|.||+++ |+.+..+..+. .-...+++|++.+++.   --.+++|.+   ++|   +..+.++...+..++.+++++
T Consensus       209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs  287 (420)
T KOG2096|consen  209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS  287 (420)
T ss_pred             CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence            999999999 88888887654 4455667887766655   347999987   233   122333444556678888999


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCC-------ccc-------cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMEL-------HSH-------CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~-------~~~-------~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      ++...+++.+  .||.++|||+.-.       +.+       +.  +.-..++++|+|+.||.+...  .++++..++|+
T Consensus       288 n~S~r~vtvS--kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs--~l~~~~se~g~  363 (420)
T KOG2096|consen  288 NSSTRAVTVS--KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS--DLKVFASEDGK  363 (420)
T ss_pred             CCcceeEEEe--cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC--ceEEEEcccCc
Confidence            9999999998  4999999997521       111       11  333489999999999887644  37999999999


Q ss_pred             eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ...++.+. |...|.+++|+++|+   ++|++++ ..++++.
T Consensus       364 ~~~~~e~~-h~~~Is~is~~~~g~---~~atcGd-r~vrv~~  400 (420)
T KOG2096|consen  364 DYPELEDI-HSTTISSISYSSDGK---YIATCGD-RYVRVIR  400 (420)
T ss_pred             cchhHHHh-hcCceeeEEecCCCc---EEeeecc-eeeeeec
Confidence            98888654 466799999999999   8888875 5788875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.71  E-value=8.2e-16  Score=136.81  Aligned_cols=234  Identities=16%  Similarity=0.211  Sum_probs=158.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--Cc-eEEEeCCCC--cE-EEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTK--DG-FKIFDSSTG--RL-CYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~--~g-~~vw~~~~~--~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ...+.++.|+...- |++++.  +. +++|.-...  +. +..+..+ ...++.+..- . +.++++|     ..+.|+|
T Consensus        34 ~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~-S-~y~~sgG-----~~~~Vki  105 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ-S-LYEISGG-----QSGCVKI  105 (673)
T ss_pred             CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc-c-eeeeccC-----cCceeee
Confidence            34489999988765 444433  33 478864332  12 2222211 1222322211 2 3344554     5789999


Q ss_pred             EECCCCCEEEEEE-cCCceeEEEEcCCeEEEE--E-CCeEEEEECCCCeeeeeecCCCC-CceEEEEeeCCCccEEEEcC
Q 019672           80 FNTTTGTALRELN-FLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPN-LKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~~~v~--~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~  154 (337)
                      ||++...+.+.+. |.+.|+++.++.+.-.++  . .|.|.|..+.++....++..+.+ ...++-++++. ..+|.+++
T Consensus       106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~sk-r~lL~~as  184 (673)
T KOG4378|consen  106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSK-RFLLSIAS  184 (673)
T ss_pred             hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccccc-ceeeEeec
Confidence            9999666555554 445899999875443333  3 67999999998877666654322 22344555543 34555555


Q ss_pred             CCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                        .+|.|.+||++.....      |.+|...|+|+|. ..+||+.+.|.. |.+||+...+...++.   ..++..+|+|
T Consensus       185 --d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf  258 (673)
T KOG4378|consen  185 --DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAF  258 (673)
T ss_pred             --cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeee
Confidence              5999999999877654      4599999999995 458899999987 5799998777666653   2456889999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      +++|.   +|++|+..|.|..||++..+.|.
T Consensus       259 ~~~G~---~L~aG~s~G~~i~YD~R~~k~Pv  286 (673)
T KOG4378|consen  259 SECGT---YLCAGNSKGELIAYDMRSTKAPV  286 (673)
T ss_pred             cCCce---EEEeecCCceEEEEecccCCCCc
Confidence            99999   99999999999999998765543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.70  E-value=1.3e-15  Score=135.47  Aligned_cols=264  Identities=11%  Similarity=0.092  Sum_probs=173.2

Q ss_pred             EEEEEcCCceEEEeCCCCcE--EEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEEEECCC--CCE-EEEEEcC
Q 019672           21 GFALSTKDGFKIFDSSTGRL--CYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLFNTTT--GTA-LRELNFL   94 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~iwd~~~--~~~-~~~~~~~   94 (337)
                      +.++++.|.+++||....+.  .+..+....++..+.+.. +.+.+.+.+     .|..+++|.-..  ++. +......
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~-----gdk~~~~~~K~g~~~~Vp~~~k~~g   79 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMA-----GDKVMRIKEKDGKTPEVPRVRKLTG   79 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecC-----CceeEEEecccCCCCccceeecccc
Confidence            56667778899999765433  233222222334444444 334444442     489999996322  211 1111112


Q ss_pred             CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672           95 TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (337)
Q Consensus        95 ~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~  171 (337)
                      ..-.|+.....-+..+.   .+.|+|||++.....+.+..|.  ..+.++..+-...+||+.+  ..|.|.|..+.+...
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs--~gGdiiih~~~t~~~  155 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVS--DGGDIIIHGTKTKQK  155 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEec--cCCcEEEEecccCcc
Confidence            23333433333233332   7799999998544444455443  4677777777778999887  479999999887765


Q ss_pred             ccc------CceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          172 HCE------APLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       172 ~~~------~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      ..+      ..|.-+.|+|..+ +|.+++.+|. +.+||++...++..+.. .|.++...|+|||...  .+|++-+.|.
T Consensus       156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne--~l~vsVG~Dk  231 (673)
T KOG4378|consen  156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNE--ALLVSVGYDK  231 (673)
T ss_pred             ccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCcc--ceEEEecccc
Confidence            432      4467899999766 5678888997 68999998887776654 4577888999999887  4889999999


Q ss_pred             cEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          245 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       245 ~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      .|.+||+.......       .+..--|               ..++++++.+.+|++|+..|.++.|++...+.
T Consensus       232 ki~~yD~~s~~s~~-------~l~y~~P---------------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  232 KINIYDIRSQASTD-------RLTYSHP---------------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             eEEEeecccccccc-------eeeecCC---------------cceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            99999987443211       1110001               12456678889999999999999999976654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.3e-16  Score=154.31  Aligned_cols=219  Identities=12%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CCceEEEEECCC---CCE---EEE-EEcCCceeEEEEcCCeE-EEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672           73 SPRRLCLFNTTT---GTA---LRE-LNFLTSILAVRLNKKRL-VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF  141 (337)
Q Consensus        73 ~d~~v~iwd~~~---~~~---~~~-~~~~~~v~~i~~~~~~~-~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (337)
                      .||.|.+||...   +..   +.+ -.|+++|+.+.|++..- +++.   ++.|.|||+.+.+.-........+..+.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            799999999764   221   122 24678999999987543 4443   789999999876554444333345567888


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCC-EEEEEeCCCc--EEEEEEcCCCc-ee
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGM-YIATASEQGT--IIRVFLVSEAT-KS  210 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~-~lat~s~dg~--~i~vwd~~~~~-~~  210 (337)
                      +++....++..+++ .+|.+.|||++..+.+-.       ..+..++|+|++. .|+++++|..  +|.+||++.-. .+
T Consensus       168 sWNrkvqhILAS~s-~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  168 SWNRKVSHILASGS-PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             ccchhhhHHhhccC-CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            98866555444443 589999999998765432       3488999999764 6777777643  57899987543 34


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  290 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  290 (337)
                      +++ ++ |..-|.+|.|++.+.  .+|++++.|+.|-+|+.++++-.           ..+|..  .-|-+...     +
T Consensus       247 k~~-~~-H~~GilslsWc~~D~--~lllSsgkD~~ii~wN~~tgEvl-----------~~~p~~--~nW~fdv~-----w  304 (1049)
T KOG0307|consen  247 KIL-EG-HQRGILSLSWCPQDP--RLLLSSGKDNRIICWNPNTGEVL-----------GELPAQ--GNWCFDVQ-----W  304 (1049)
T ss_pred             hhh-cc-cccceeeeccCCCCc--hhhhcccCCCCeeEecCCCceEe-----------eecCCC--Ccceeeee-----e
Confidence            444 33 344589999998874  29999999999999998875431           122221  12222211     1


Q ss_pred             cCCCccc-CEEEEEEeCCcEEEEEEecC
Q 019672          291 FPAGVKR-ASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       291 ~~~~~~~-~~l~~~~~dg~~~~~~~~~~  317 (337)
                         -+++ ..+.+.+.||.|.||++...
T Consensus       305 ---~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  305 ---CPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ---cCCCcchhhhheeccceeeeeeecC
Confidence               1222 35778889999999999544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=7.6e-16  Score=131.33  Aligned_cols=197  Identities=15%  Similarity=0.190  Sum_probs=138.7

Q ss_pred             CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc--------CceEEEEeC
Q 019672          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLS  183 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s  183 (337)
                      .+.|++||..+++.+..+..++.....+.+........+.+++  .||+|++||+++......        .+..|++.+
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            7899999999999999998776655556665532223455555  599999999998764321        578889988


Q ss_pred             CCCCEEEEEeC----CCcEEEEEEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          184 SNGMYIATASE----QGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       184 ~dg~~lat~s~----dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      ..++.+++|.+    +. .+.+||++..+. +..+. ..|...|++|.|+|...  ++|++||.||.|.|||++.+.+.-
T Consensus       127 ck~~ii~~GtE~~~s~A-~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeD  202 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDA-SVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEED  202 (376)
T ss_pred             CcCCeEEeccccccCce-EEEEEEeccccchhhhhh-hhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchh
Confidence            88899999875    33 357999998877 55554 34566799999999987  899999999999999998774422


Q ss_pred             CCCccccccccccc--ccc-eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeeeccc
Q 019672          259 RGGRTSSILGSILP--ESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK  335 (337)
Q Consensus       259 ~~~~~~~~~~~~~~--~~~-~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (337)
                      .       +-.+..  ..+ ..-|..             ++=++|++.+..+.+.+|+++...+  .+|--...+...|.
T Consensus       203 a-------L~~viN~~sSI~~igw~~-------------~~ykrI~clTH~Etf~~~ele~~~~--~~~~~~~~~~~~d~  260 (376)
T KOG1188|consen  203 A-------LLHVINHGSSIHLIGWLS-------------KKYKRIMCLTHMETFAIYELEDGSE--ETWLENPDVSADDL  260 (376)
T ss_pred             h-------HHHhhcccceeeeeeeec-------------CCcceEEEEEccCceeEEEccCCCh--hhcccCccchhhhH
Confidence            1       111111  001 112222             1225799999999999999965553  35555555666666


Q ss_pred             C
Q 019672          336 R  336 (337)
Q Consensus       336 ~  336 (337)
                      |
T Consensus       261 r  261 (376)
T KOG1188|consen  261 R  261 (376)
T ss_pred             H
Confidence            5

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.70  E-value=4.5e-15  Score=130.97  Aligned_cols=194  Identities=13%  Similarity=0.094  Sum_probs=132.9

Q ss_pred             CCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEE----EE-EEcCCceeEEEEcCC---eEEEEE-CCeEE
Q 019672           47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL----RE-LNFLTSILAVRLNKK---RLVIVL-REKTY  116 (337)
Q Consensus        47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~----~~-~~~~~~v~~i~~~~~---~~~v~~-d~~i~  116 (337)
                      +.+..+++.+..+ .++.+|.      .-|+|-+||+.+.++.    .. ..+..+|.++.|+|.   +++.++ ||+|+
T Consensus       187 ~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             cceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            4455566655556 4444444      4789999999643321    12 234568999999763   444444 99999


Q ss_pred             EEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCC-CCEE
Q 019672          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSN-GMYI  189 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~d-g~~l  189 (337)
                      +-|++....-..+.........+.+.++.+...+.+++  .=|...+||+++...      .|+..|++|+++|. -.+|
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99998763322222212233445555555555566655  356899999987654      35579999999995 4589


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEe--eccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          190 ATASEQGTIIRVFLVSEATKSYS--FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~--~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ||+|.|++ .+|||++.-.....  +..-.|...|.+..|||++.   .|++.+.|++|+|||..
T Consensus       339 aT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  339 ATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecc
Confidence            99999998 59999986443221  22223456799999999998   79999999999999974

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.70  E-value=5.1e-16  Score=128.15  Aligned_cols=232  Identities=13%  Similarity=0.154  Sum_probs=145.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ++.+.|+|+-|..+++ |.+|...|+ ++|++.+.+-+..++ .+...+..+..-++ -.+.+-|     .|.++.+|++
T Consensus        12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqg-----Rd~~L~lw~i   84 (323)
T KOG0322|consen   12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQG-----RDPLLILWTI   84 (323)
T ss_pred             cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcC-----CCceEEEEEc
Confidence            5677899999988877 777888885 999999876544333 22223333322222 1222322     4677777776


Q ss_pred             CCCCEEEE--E-----------------------Ec-----------------------------CCceeEEEE----cC
Q 019672           83 TTGTALRE--L-----------------------NF-----------------------------LTSILAVRL----NK  104 (337)
Q Consensus        83 ~~~~~~~~--~-----------------------~~-----------------------------~~~v~~i~~----~~  104 (337)
                      .-+..+..  +                       ..                             .+.+.+..+    ..
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            54221100  0                       00                             012333322    11


Q ss_pred             CeEEEEE--CCeEEEEECCCCeeeeeecC--------CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--ccc
Q 019672          105 KRLVIVL--REKTYIYDANTLAILDTIDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSH  172 (337)
Q Consensus       105 ~~~~v~~--d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~~~  172 (337)
                      ..+++++  ++.+.+||+.++..+-.+..        ..+...++.+..++....=+.++  .+..+..|.+...  ...
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg--a~dkl~~~Sl~~s~gslq  242 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG--ADDKLVMYSLNHSTGSLQ  242 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC--ccccceeeeeccccCccc
Confidence            2344455  88999999988743333211        01122344444433222223333  2556777876543  222


Q ss_pred             c-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          173 C-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       173 ~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      +       .-.|..+.+-||++.+||++-||+ ||||+.++++.+..++.  |.+.|++++|+||..   .+|++|.|++
T Consensus       243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrtl~pLAVLky--Hsagvn~vAfspd~~---lmAaaskD~r  316 (323)
T KOG0322|consen  243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRTLNPLAVLKY--HSAGVNAVAFSPDCE---LMAAASKDAR  316 (323)
T ss_pred             ccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEeccCCchhhhhh--hhcceeEEEeCCCCc---hhhhccCCce
Confidence            1       155889999999999999999998 79999999999988864  457899999999987   9999999999


Q ss_pred             EEEEec
Q 019672          246 LHVFSP  251 (337)
Q Consensus       246 v~iw~l  251 (337)
                      |.+|++
T Consensus       317 ISLWkL  322 (323)
T KOG0322|consen  317 ISLWKL  322 (323)
T ss_pred             EEeeec
Confidence            999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.70  E-value=1.9e-15  Score=138.16  Aligned_cols=243  Identities=12%  Similarity=0.144  Sum_probs=157.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEE----EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYE----RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ..|.+.|..+.|-|...+|++++.| .+++||+.+.++.-.    .+.+.+..+++... +-..+++||     .|+.|.
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGg-----RDg~il  170 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGG-----RDGEIL  170 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeecc-----CCCcEE
Confidence            3688899999999955667766555 479999998876533    22233443443322 334455554     799999


Q ss_pred             EEECCCCCEE---------------------------EEE-----EcCCceeEEEE-cCCeEEEEE--CCeEEEEECCCC
Q 019672           79 LFNTTTGTAL---------------------------REL-----NFLTSILAVRL-NKKRLVIVL--REKTYIYDANTL  123 (337)
Q Consensus        79 iwd~~~~~~~---------------------------~~~-----~~~~~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~  123 (337)
                      |||++....-                           ...     .+.+.|+.+.| +.+.++.++  |+.|+||||+..
T Consensus       171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            9998743200                           000     01123555555 344455554  889999999865


Q ss_pred             eeeeee------cCCCC---CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCC
Q 019672          124 AILDTI------DTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSN  185 (337)
Q Consensus       124 ~~~~~~------~~~~~---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~d  185 (337)
                      ......      ..+.+   ..+...+..+.-|.+|...-  .|+.|..|++.+......         .--..-..+||
T Consensus       251 ~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  251 YTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             ccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            332221      11112   34567777776666665443  499999999987543211         11223356999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          186 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       186 g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      +.+|++|+.|+.. .+|.+.+.+.-..+..|+ .-+|++++|.|..-  .-++++++|.+++||++..+.+.+
T Consensus       329 ~~~l~SgSsd~~a-yiw~vs~~e~~~~~l~Gh-t~eVt~V~w~pS~~--t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  329 DCSLLSGSSDEQA-YIWVVSSPEAPPALLLGH-TREVTTVRWLPSAT--TPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             CceEeccCCCcce-eeeeecCccCChhhhhCc-ceEEEEEeeccccC--CCceeeccCcceEEEeccCchhhc
Confidence            9999999999985 799999887655554553 56799999986543  248888999999999997655443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=5.2e-15  Score=125.70  Aligned_cols=280  Identities=14%  Similarity=0.150  Sum_probs=181.1

Q ss_pred             CCCCCCeEEEEEcC-----CCCEEEEEcCCceEEEeCCCC---cEEEEEe----eCCEEEEEEccCC---CEEEEEeCCC
Q 019672            4 QSSSYPVFFVSFNQ-----DNSGFALSTKDGFKIFDSSTG---RLCYERA----VGAFSIVEMLYSS---SLLAIVGAGE   68 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-----dg~~la~g~~~g~~vw~~~~~---~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~g~   68 (337)
                      ..+..+|..++||+     +-+.+|+.+.+.+.+|+...-   +++....    .....-+.+.++.   +-+..++|  
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G--  112 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG--  112 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--
Confidence            46778999999994     334578888888889975432   2222221    1223444555554   33333343  


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe--EEE-EE-CCeEEEEECCCCeeeeeecCC-CCCceEEEEe
Q 019672           69 QPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTV-PNLKGLCAFS  142 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v-~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~  142 (337)
                          .-|.|+|.|+.++++...+-.+ ..|..|++.|..  +++ ++ |.+|++|+++++..+..+-.. .+...++++.
T Consensus       113 ----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  113 ----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             ----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence                4789999999999998887554 589999998765  444 34 889999999999988887433 2344578888


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCccc---------------------------------ccCceEEEEeCCCCCEE
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSH---------------------------------CEAPLAAIVLSSNGMYI  189 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------------------------------~~~~i~~~~~s~dg~~l  189 (337)
                      +++++.+++++|  .|.++++|++...+..                                 |..+|-|+.|=  |.++
T Consensus       189 ~~~~gd~i~ScG--mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i  264 (385)
T KOG1034|consen  189 FSLDGDRIASCG--MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI  264 (385)
T ss_pred             EcCCCCeeeccC--CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence            899999999999  5999999999732211                                 11344445442  5788


Q ss_pred             EEEeCCCcEEEEEEc-CCCceeEeeccC-----------CcceeEEEEEe--ecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          190 ATASEQGTIIRVFLV-SEATKSYSFRRG-----------TYPSTIFSLSF--GQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       190 at~s~dg~~i~vwd~-~~~~~~~~~~~~-----------~~~~~i~~l~f--s~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ++=|-++. |..|-- +-++.+....+.           ...+.|+-|.|  .|-++   +||.|...|.|.+|||+...
T Consensus       265 lSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~---~la~gnq~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  265 LSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK---MLALGNQSGKVYVWDLDNNE  340 (385)
T ss_pred             eecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---HHhhccCCCcEEEEECCCCC
Confidence            88888886 668976 222222222111           11234555555  46677   99999999999999998765


Q ss_pred             ccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          256 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                      ++...    ...-......           .  .-.++..++..|+..|.||.|..|+.
T Consensus       341 p~~~t----tl~~s~~~~t-----------V--RQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  341 PPKCT----TLTHSKSGST-----------V--RQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CccCc----eEEeccccce-----------e--eeeeecccCcEEEEEeCCCcEEEEEe
Confidence            53210    0000000000           0  01122445678999999999988875

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.4e-15  Score=126.15  Aligned_cols=180  Identities=11%  Similarity=0.152  Sum_probs=131.9

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-ceeEEEE----cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC-ceEEEEeeCC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-SILAVRL----NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSL  145 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~----~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~  145 (337)
                      +.+.|++||..+++.+.+++.+. .+..+.|    ++..+..++ ||+|++||++.......+....++ ....++..+-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            46899999999999888887655 4556666    345566665 999999999987666555443333 3445666655


Q ss_pred             CccEEEEcCC--CCccEEEEEEccCCcc-c------ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce----eE
Q 019672          146 NACFLAVPAS--TTKGSVLVYNVMELHS-H------CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK----SY  211 (337)
Q Consensus       146 ~~~~la~~~~--~~dg~v~i~d~~~~~~-~------~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~----~~  211 (337)
                      ....++++.-  ..+-.|.+||++..+. +      |...|+++.|+| +.++|+|||.||- +.|||++....    +.
T Consensus       128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDNEEDALLH  206 (376)
T ss_pred             cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCcchhhHHH
Confidence            5667766531  1367899999998765 2      458899999999 5679999999995 79999975432    22


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      .+.   +.+.|.++.|..++.  +.+.+-+..++..+|+++.+.+..
T Consensus       207 viN---~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  207 VIN---HGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             hhc---ccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCChhh
Confidence            332   234599999998884  368888999999999998876543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.69  E-value=3.6e-15  Score=128.71  Aligned_cols=237  Identities=13%  Similarity=0.163  Sum_probs=151.5

Q ss_pred             CCCCCCCeEEEEEcCCCCE-EE-EEcCCc-eEEEeCCCC----------------cEEEEEeeCCEEEEEEccCCC-EEE
Q 019672            3 NQSSSYPVFFVSFNQDNSG-FA-LSTKDG-FKIFDSSTG----------------RLCYERAVGAFSIVEMLYSSS-LLA   62 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~-la-~g~~~g-~~vw~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~   62 (337)
                      .-++.+.++.+.-++-|+- ++ +=++.| ++||++...                +.+++...+...-..+.+++- .-.
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            4456667777777776532 33 334555 799987532                123444333333333444441 112


Q ss_pred             EEeCCCCCCCCCceEEEEECCCCCEEEE----EEcCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672           63 IVGAGEQPSLSPRRLCLFNTTTGTALRE----LNFLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPN  134 (337)
Q Consensus        63 ~~~~g~~~~~~d~~v~iwd~~~~~~~~~----~~~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~  134 (337)
                      +.+|.     +-+.|++|...+|.....    ..|...|-++.|+|..   ++.++ |++|+|||++.+.....+.+..+
T Consensus       227 LlsGD-----c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh  301 (440)
T KOG0302|consen  227 LLSGD-----CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH  301 (440)
T ss_pred             cccCc-----cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc
Confidence            33331     467899999988865432    2345588999997642   33344 99999999998844333333344


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcC
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~  205 (337)
                      ...+..++++.+..+||+++  .||+++|||++..+..        |+.||++|.|+|. ...|+++++|.. |.|||+.
T Consensus       302 ~sDVNVISWnr~~~lLasG~--DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q-itiWDls  378 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGG--DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ-ITIWDLS  378 (440)
T ss_pred             CCceeeEEccCCcceeeecC--CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc-EEEEEee
Confidence            55788888888888888887  6999999999876532        5599999999994 457777888877 6899985


Q ss_pred             CCce-----------eEee-----ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          206 EATK-----------SYSF-----RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       206 ~~~~-----------~~~~-----~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      -...           +..+     --+.....|..|.|++.-.  .+|++.+.|| +.||.
T Consensus       379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP--G~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP--GLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC--CeEEEecccc-eeEEE
Confidence            3221           0000     0011123477889997765  4899999998 44553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.68  E-value=1.7e-14  Score=126.96  Aligned_cols=278  Identities=12%  Similarity=0.130  Sum_probs=171.9

Q ss_pred             EEEEcCCCCEEEEEcC-Cc-----eEEEeCCCCcEEEEEee---CCE-EEEEEcc-------CCCEEEEEeCCCCCCCCC
Q 019672           12 FVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYERAV---GAF-SIVEMLY-------SSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~-~g-----~~vw~~~~~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~g~~~~~~d   74 (337)
                      .+..-|...+++++-. +.     +.|||-+. .-+|.++.   ... .++++.-       .+|++|+.+       .|
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGt-------md  201 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGT-------MD  201 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEec-------cC
Confidence            4456677777776643 33     35666432 33444321   111 1223221       235666544       47


Q ss_pred             ceEEEEECCCCCE---EEEEE-------------------cCCceeEEEEcCCe-EEEEE---CCeEEEEECCCCeeeee
Q 019672           75 RRLCLFNTTTGTA---LRELN-------------------FLTSILAVRLNKKR-LVIVL---REKTYIYDANTLAILDT  128 (337)
Q Consensus        75 ~~v~iwd~~~~~~---~~~~~-------------------~~~~v~~i~~~~~~-~~v~~---d~~i~i~d~~~~~~~~~  128 (337)
                      ..|.|||+.--..   ...+.                   |...|.+++++.+. -++++   |.+|.+||+.++++..+
T Consensus       202 p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s  281 (463)
T KOG0270|consen  202 PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS  281 (463)
T ss_pred             ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee
Confidence            8999999753211   11111                   22245667776542 22222   88999999999999888


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCC-EEEEEeCCCcEEEEE
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGM-YIATASEQGTIIRVF  202 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~-~lat~s~dg~~i~vw  202 (337)
                      +..+.  ..+.++.+++....+...|+ .|++|.+.|.+......     .+.|..++|+|... .++++..||+ +|=+
T Consensus       282 ~~~~~--k~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~-v~~~  357 (463)
T KOG0270|consen  282 ITHHG--KKVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT-VYYF  357 (463)
T ss_pred             hhhcC--CceeEEEecCCCceEEEecc-ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCce-EEee
Confidence            86444  35666776665544444444 59999999999543332     28899999999654 6677788997 5899


Q ss_pred             EcCCC-ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc
Q 019672          203 LVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP  281 (337)
Q Consensus       203 d~~~~-~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~  281 (337)
                      |++.. +++.++.  .|..+|.+|++++.-+  ++|+++|.|++|++|++..........+.-. ++.     ..+ .  
T Consensus       358 D~R~~~~~vwt~~--AHd~~ISgl~~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-~~r-----l~c-~--  424 (463)
T KOG0270|consen  358 DIRNPGKPVWTLK--AHDDEISGLSVNIQTP--GLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-LGR-----LHC-F--  424 (463)
T ss_pred             ecCCCCCceeEEE--eccCCcceEEecCCCC--cceeeccccceEEEEeecCCCCccccccccc-ccc-----eee-c--
Confidence            99875 7777774  4567899999997766  5999999999999999875433211111100 110     000 0  


Q ss_pred             ccceeeeeccCCCcc-cCEEEEEEeCCcEEEEEEecCCCCeece
Q 019672          282 ADHHVLRNAFPAGVK-RASVSVITYNGYFVEYIFSINNCCESTW  324 (337)
Q Consensus       282 ~~~~~~~~~~~~~~~-~~~l~~~~~dg~~~~~~~~~~~~~~~~~  324 (337)
                                +..++ .-.++.|+..+.+++|++-+...-++.+
T Consensus       425 ----------~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF  458 (463)
T KOG0270|consen  425 ----------ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF  458 (463)
T ss_pred             ----------ccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence                      11111 2357788888889999997776655433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=2.6e-14  Score=127.59  Aligned_cols=284  Identities=15%  Similarity=0.116  Sum_probs=181.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe----eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .|++.|.++..-.+|++|. |+.|. +..|| +..+.+...+    .+.+..+.  ..... ++++.      ..|.|-.
T Consensus       285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGT------trN~iL~  353 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGT------TRNFILQ  353 (626)
T ss_pred             ecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEee------ccceEEE
Confidence            6889999999999999888 66665 79999 4444443332    24444332  22222 45554      2455555


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      =.++++-.+....+......++.++.  .++.++ |+.+++|+  ..+++.+......   ..+..++|.+ .+|.+.  
T Consensus       354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~---~~~~~fhpsg-~va~Gt--  425 (626)
T KOG2106|consen  354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP---AECADFHPSG-VVAVGT--  425 (626)
T ss_pred             eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCc---eeEeeccCcc-eEEEee--
Confidence            56666666666666667888887654  444444 89999999  4555555443222   3455666767 777766  


Q ss_pred             CccEEEEEEccCCccc--c--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCC
Q 019672          157 TKGSVLVYNVMELHSH--C--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      ..|...+.|..+...+  |  ..++++++|+|+|.+||.||.|+. |.||-+.. |.+..+..+.+ .++|+.|.||+|+
T Consensus       426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds  503 (626)
T KOG2106|consen  426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDS  503 (626)
T ss_pred             ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCCCcEEEEeeeec-CceeEEeeecCCC
Confidence            5899999999886544  2  289999999999999999999997 68998854 55555555443 3789999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  311 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~  311 (337)
                      +   +|.+-|-|-.|-.|. ...-...+.-+.-.|......-.| .+...+... -.++++-....+.+++|-..|++++
T Consensus       504 ~---~~~~~S~d~eiLyW~-~~~~~~~ts~kDvkW~t~~c~lGF-~v~g~s~~t-~i~a~~rs~~~~~lA~gdd~g~v~l  577 (626)
T KOG2106|consen  504 Q---FLVSNSGDYEILYWK-PSECKQITSVKDVKWATYTCTLGF-EVFGGSDGT-DINAVARSHCEKLLASGDDFGKVHL  577 (626)
T ss_pred             c---eEEeccCceEEEEEc-cccCcccceecceeeeeeEEEEEE-EEecccCCc-hHHHhhhhhhhhhhhccccCceEEE
Confidence            9   999999999999993 332222211111111110000000 011111111 1122222334577889999999999


Q ss_pred             EEEe
Q 019672          312 YIFS  315 (337)
Q Consensus       312 ~~~~  315 (337)
                      |...
T Consensus       578 f~yP  581 (626)
T KOG2106|consen  578 FSYP  581 (626)
T ss_pred             Eccc
Confidence            9763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=3.9e-16  Score=151.09  Aligned_cols=239  Identities=10%  Similarity=0.108  Sum_probs=169.7

Q ss_pred             CCCCCeEEEEEcCCCCE----EEEEcCCc-eEEEeCCCC------cEEEE--EeeCCEEEEEEccCC-CEEEEEeCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSG----FALSTKDG-FKIFDSSTG------RLCYE--RAVGAFSIVEMLYSS-SLLAIVGAGEQP   70 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~----la~g~~~g-~~vw~~~~~------~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~g~~~   70 (337)
                      .....-+.++|.+.|+.    +|.|.+|| +.+||....      ..+..  .+.+.|.-+++.... |.++  +|+   
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA--SGa---  136 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA--SGA---  136 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee--ccC---
Confidence            45567788999988876    78888888 699997652      12222  333555555554333 3444  332   


Q ss_pred             CCCCceEEEEECCCCCEEEEE---EcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           71 SLSPRRLCLFNTTTGTALREL---NFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        71 ~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                        .|+.|.|||+..-+.-.++   ...+.|.+++|+.+-  ++...  ++++.|||++..+.+-.+..+........+.+
T Consensus       137 --~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  137 --DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             --CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence              5999999999875443333   234689999998653  33332  67999999998877767655544333445666


Q ss_pred             CCCc--cEEEEcCCCCccEEEEEEccCCc------ccccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          144 SLNA--CFLAVPASTTKGSVLVYNVMELH------SHCEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       144 ~~~~--~~la~~~~~~dg~v~i~d~~~~~------~~~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +|++  ++++..+.+..-.|.+||++...      ..|+..|.++.|.+.+ ++|++++.|+++ -+|+.++|+.+.++.
T Consensus       215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i-i~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI-ICWNPNTGEVLGELP  293 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe-eEecCCCceEeeecC
Confidence            6654  34444444456779999987543      2466889999999966 899999999996 599999999999886


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ..  ..-+..+.|+|...  ..+++++-||.|.|+.+....
T Consensus       294 ~~--~nW~fdv~w~pr~P--~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQ--GNWCFDVQWCPRNP--SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CC--CcceeeeeecCCCc--chhhhheeccceeeeeeecCC
Confidence            42  34588999999877  589999999999999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=6.9e-15  Score=135.20  Aligned_cols=264  Identities=12%  Similarity=0.125  Sum_probs=181.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      -|..++|-|||+.|+.+..+.+.+||...|.++.....|.-.+-++.++.++-.+.+|+     +|+.|.+|+.+- +-+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-----aDK~VI~W~~kl-EG~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-----ADKSVIIWTSKL-EGI   87 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-----CceeEEEecccc-cce
Confidence            68899999999999999999999999999988877665544444444555555556664     799999998653 345


Q ss_pred             EEEEcCCceeEEEEcCC--eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc
Q 019672           89 RELNFLTSILAVRLNKK--RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV  166 (337)
Q Consensus        89 ~~~~~~~~v~~i~~~~~--~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~  166 (337)
                      ..++|...|.++.|+|-  .++.+.-+..-+|........    .+.....+++-++..|+++++.+-  .+|+|.|-+-
T Consensus        88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~--~nGTIsiRNk  161 (1081)
T KOG1538|consen   88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGM--FNGTISIRNK  161 (1081)
T ss_pred             eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEEec--cCceEEeecC
Confidence            67788889999999984  344444556778876543222    122234567778888999999876  5899999864


Q ss_pred             cCCccc-------ccCceEEEEeCCCCC-----EEEEEeCCCcEEEEEEcCCCceeEeec-cCCcceeEEEEEeecCCCc
Q 019672          167 MELHSH-------CEAPLAAIVLSSNGM-----YIATASEQGTIIRVFLVSEATKSYSFR-RGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       167 ~~~~~~-------~~~~i~~~~~s~dg~-----~lat~s~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~l~fs~dg~~  233 (337)
                      ......       ..++|.+++|+|...     .++...-..+ +..+.+ +|+.+..-+ .+.   .-.|+.+-|+|. 
T Consensus       162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~L~F---dP~CisYf~NGE-  235 (1081)
T KOG1538|consen  162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRALNF---DPCCISYFTNGE-  235 (1081)
T ss_pred             CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeecccccCCC---CchhheeccCCc-
Confidence            322211       128999999999643     3444433333 233333 455443211 111   246889999999 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        |++.|+.|+-+++|--+ +.           .-+.+.+.-..+|+.+-          .|.+.+++.||.||++..|+
T Consensus       236 --y~LiGGsdk~L~~fTR~-Gv-----------rLGTvg~~D~WIWtV~~----------~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  236 --YILLGGSDKQLSLFTRD-GV-----------RLGTVGEQDSWIWTVQA----------KPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             --EEEEccCCCceEEEeec-Ce-----------EEeeccccceeEEEEEE----------ccCCceEEEEEccCeeehhh
Confidence              99999999999999532 11           22334444567888754          44558999999999999999


Q ss_pred             E
Q 019672          314 F  314 (337)
Q Consensus       314 ~  314 (337)
                      +
T Consensus       292 l  292 (1081)
T KOG1538|consen  292 L  292 (1081)
T ss_pred             h
Confidence            8

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.67  E-value=4e-16  Score=137.77  Aligned_cols=219  Identities=16%  Similarity=0.282  Sum_probs=174.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      =+.+.++.+|++++.|+.+| +..+|..++++..+.+. ..+..+.++++..++|.+        ..+.+.|||- .|..
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA--------QK~y~yvYD~-~GtE  202 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA--------QKKYVYVYDN-NGTE  202 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--------hhceEEEecC-CCcE
Confidence            35789999999999988887 69999999999888764 345556677777776654        3688999985 4777


Q ss_pred             EEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE
Q 019672           88 LRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY  164 (337)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~  164 (337)
                      ++.+.-...|..+.|-|.++++++   .|.++.-|+.+|+++..+.+...  .+-.++.+|-+..+-++.  ..|+|.+|
T Consensus       203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G--~~~vm~qNP~NaVih~Gh--snGtVSlW  278 (545)
T KOG1272|consen  203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG--RTDVMKQNPYNAVIHLGH--SNGTVSLW  278 (545)
T ss_pred             EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC--ccchhhcCCccceEEEcC--CCceEEec
Confidence            888877888999999888777665   56889999999999999887654  345567778888888777  48999999


Q ss_pred             EccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          165 NVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       165 d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      ...+...+     |.++|.+|+++|+|+++||++.|.. ++|||++.-..+.++..   +.+...++||..|    +||.
T Consensus       279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg----lLA~  350 (545)
T KOG1272|consen  279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG----LLAL  350 (545)
T ss_pred             CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc----ceee
Confidence            98877654     4599999999999999999999987 69999998887776653   3346778999877    4665


Q ss_pred             EeCCCcEEEEe
Q 019672          240 TSSSGSLHVFS  250 (337)
Q Consensus       240 ~s~dg~v~iw~  250 (337)
                      +-. ..|+||.
T Consensus       351 ~~G-~~v~iw~  360 (545)
T KOG1272|consen  351 SYG-DHVQIWK  360 (545)
T ss_pred             ecC-Ceeeeeh
Confidence            544 4699996

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=1.1e-13  Score=125.39  Aligned_cols=231  Identities=13%  Similarity=0.089  Sum_probs=145.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CceEEEeCC-CCcEEE--EEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTK--DGFKIFDSS-TGRLCY--ERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~--~g~~vw~~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +....++++||+++|+++..  +++.+|+++ ++++..  ... ......+.+.++.+.++.+..      .++.|.+||
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~  108 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSP  108 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEE
Confidence            45667899999999877643  457889886 444322  221 123445666666776666553      489999999


Q ss_pred             CCCC----CEEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeee-------eecCCCCCceEEEEeeCCC
Q 019672           82 TTTG----TALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILD-------TIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        82 ~~~~----~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  146 (337)
                      +.+.    +.+..+........+.++++  .++++.  ++.|.+||+.+...+.       .+.....   ...+.++|+
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~---p~~~~~~pd  185 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG---PRHMVFHPN  185 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC---CceEEECCC
Confidence            8643    22333333334566777765  454554  6899999997643221       1112222   233455677


Q ss_pred             ccEEEEcCCCCccEEEEEEccC--Cc--cccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-e-
Q 019672          147 ACFLAVPASTTKGSVLVYNVME--LH--SHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-K-  209 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~--~~--~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~-  209 (337)
                      +.++++... .+++|.+||+..  +.  ..+.           .....+.|+|||++|+++......|.+|++.... . 
T Consensus       186 g~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~  264 (330)
T PRK11028        186 QQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL  264 (330)
T ss_pred             CCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence            778776653 489999999973  22  1111           1123588999999999987643457899986433 2 


Q ss_pred             --eEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEEecCCC
Q 019672          210 --SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFA  254 (337)
Q Consensus       210 --~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l~~~  254 (337)
                        +.....+   .....++|+|||+   +|+++.. +++|.||+++..
T Consensus       265 ~~~~~~~~~---~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        265 SFEGHQPTE---TQPRGFNIDHSGK---YLIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             EEeEEEecc---ccCCceEECCCCC---EEEEEEccCCcEEEEEEcCC
Confidence              2222111   1235689999999   7777665 899999998643

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.67  E-value=3e-15  Score=136.84  Aligned_cols=131  Identities=15%  Similarity=0.190  Sum_probs=97.0

Q ss_pred             ccEEEEEEccCCcccc---------cCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce-------eEeeccCCcce
Q 019672          158 KGSVLVYNVMELHSHC---------EAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK-------SYSFRRGTYPS  220 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~---------~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~-------~~~~~~~~~~~  220 (337)
                      .|.|.||+++..-.+.         ...|+.+.|+| |..+||.+++||. |++|.+..+-.       ...+.  .|..
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt--~h~e  678 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILT--IHGE  678 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeee--cccc
Confidence            5777777776543322         16689999999 7889999999997 79999875532       12232  2356


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      .|+++.|+|-..  +.||+++.|-||+|||+.+.+...+       +.+.....+.-.|++++              .++
T Consensus       679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~-------l~gHtdqIf~~AWSpdG--------------r~~  735 (1012)
T KOG1445|consen  679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSR-------LVGHTDQIFGIAWSPDG--------------RRI  735 (1012)
T ss_pred             eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhhe-------eccCcCceeEEEECCCC--------------cce
Confidence            799999999776  5999999999999999988765332       22233344555676654              899


Q ss_pred             EEEEeCCcEEEEEE
Q 019672          301 SVITYNGYFVEYIF  314 (337)
Q Consensus       301 ~~~~~dg~~~~~~~  314 (337)
                      ++.|.||++++|+=
T Consensus       736 AtVcKDg~~rVy~P  749 (1012)
T KOG1445|consen  736 ATVCKDGTLRVYEP  749 (1012)
T ss_pred             eeeecCceEEEeCC
Confidence            99999999999975

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.2e-13  Score=130.74  Aligned_cols=281  Identities=17%  Similarity=0.207  Sum_probs=174.8

Q ss_pred             EEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee--CCEEEEEEccCCC---EEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           13 VSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        13 ~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      ..|++|++++.....+.++||.+.+++.+.....  ..+.-+.+.....   .++..+       .||+|++||...+.+
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGEL   94 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcEE
Confidence            3689999999999999999999999988765433  2333334444433   233333       599999999999888


Q ss_pred             EEEEEcCCceeEEEEc--------------C-----------------------------------------------Ce
Q 019672           88 LRELNFLTSILAVRLN--------------K-----------------------------------------------KR  106 (337)
Q Consensus        88 ~~~~~~~~~v~~i~~~--------------~-----------------------------------------------~~  106 (337)
                      +.++..+-++.++.+.              .                                               ..
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            7776543322221110              0                                               01


Q ss_pred             EEEEECCeEEEEECCCCeeeeee--c-CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC--Cc-cc------cc
Q 019672          107 LVIVLREKTYIYDANTLAILDTI--D-TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LH-SH------CE  174 (337)
Q Consensus       107 ~~v~~d~~i~i~d~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~-~~------~~  174 (337)
                      ..++.+..+++|+...+.. +..  . ...+.....+.+.+|.+.++|++.  .||.|.+|.--.  .. ..      |.
T Consensus       175 ~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTK-HTSSRDITVHHTFNITCVALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             EEEEEeeeEEEEEecccce-eeccchhhhhhcccceeEEeccccceEEEec--cCCcEEEEeccccccccccceEEEecc
Confidence            2222355677777765431 111  0 011222246677778888999887  489999995332  11 11      22


Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .+|++++|++||.+|.+|+..|-+ -+|.+.++++. -+.|  -.++|..+.+|||+.   +.+..-.|+.|++-....-
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~VL-v~Wq~~T~~kq-fLPR--Lgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGVL-VLWQLETGKKQ-FLPR--LGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             cccceeEEecCCceEeecccceEE-EEEeecCCCcc-cccc--cCCeeEEEEEcCCCC---eEEEEecCceEEEEeccch
Confidence            799999999999999999999965 59999998832 2322  246799999999999   8889999999999987543


Q ss_pred             cccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          255 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      .....       ..+..|..- +.  ...-..+...+...+..+.++-.+..|.++.|++-.++..
T Consensus       325 ~~k~t-------Isgi~~~~~-~~--k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  325 EIKST-------ISGIKPPTP-ST--KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI  380 (792)
T ss_pred             hhhhh-------ccCccCCCc-cc--cccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence            32111       111111000 00  0000001111222344467777788899999988766554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.1e-14  Score=136.05  Aligned_cols=278  Identities=15%  Similarity=0.173  Sum_probs=174.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEEEEee-----CCEEEEEEccCCCE-EEEEeCCCCCCCCCceEEEEE
Q 019672            9 PVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +=..+.|+|=..+++++.+ ..++|||.+.++.+...+.     ..+..+++....+. +.+++.      .||.||||+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas------~dGvIRIwk 1139 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS------SDGVIRIWK 1139 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec------cCceEEEec
Confidence            3456788888888888875 4579999998887655443     23444555444332 233333      699999997


Q ss_pred             CC-C----CCEEEEEEc-------CCce-eEEEEc--CCeEEEEEC-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           82 TT-T----GTALRELNF-------LTSI-LAVRLN--KKRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        82 ~~-~----~~~~~~~~~-------~~~v-~~i~~~--~~~~~v~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      -. .    .+.+.....       .... .-+.|.  ..++++.+| ..|+|||....+.++.+.... ...+.+++.+-
T Consensus      1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADL 1218 (1387)
T ss_pred             ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-Cccceeecccc
Confidence            42 2    122222210       0000 112332  345555553 489999999888887775432 34566777654


Q ss_pred             Cc-cEEEEcCCCCccEEEEEEccCCcc--------ccc--CceEEEEeCCCCCE-EEEEeCCCcEEEEEEcCCCceeEee
Q 019672          146 NA-CFLAVPASTTKGSVLVYNVMELHS--------HCE--APLAAIVLSSNGMY-IATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       146 ~~-~~la~~~~~~dg~v~i~d~~~~~~--------~~~--~~i~~~~~s~dg~~-lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      .+ ..++. |. .||.|++||.+....        .|.  .+|..+.+.++|-. |++||.+|. |++||++.......+
T Consensus      1219 ~~gn~i~A-Gf-aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1219 VHGNIIAA-GF-ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred             cCCceEEE-ee-cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence            44 45554 44 699999999875432        133  44999999997765 999999997 799999875332222


Q ss_pred             ccCCc---ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672          214 RRGTY---PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  290 (337)
Q Consensus       214 ~~~~~---~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  290 (337)
                      ....+   .+.+++|..+++..   .+|+|+. +.|+||++....-... ....+|++...+..    -          .
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~~l~~~-k~n~~F~~q~~gs~----s----------c 1356 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGEQLNII-KYNPGFMGQRIGSV----S----------C 1356 (1387)
T ss_pred             eeeeccccCccceeeeeccCCC---eeeecCc-ceEEEEecChhhhccc-ccCcccccCcCCCc----c----------e
Confidence            21111   12488999999999   9999998 9999999876433221 11123333332222    1          1


Q ss_pred             cCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          291 FPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       291 ~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ++++|-.-.+++|+.|.+|.+|.-.
T Consensus      1357 L~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             eeecchhHhhhhccCCceEEEeecC
Confidence            2234444568899999999999754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.63  E-value=3.8e-13  Score=124.30  Aligned_cols=285  Identities=14%  Similarity=0.112  Sum_probs=178.7

Q ss_pred             CCCCCCeEEEEEcCCCCE-EEEEcCCceEEEeCCCCcEEEE-----EeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            4 QSSSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYE-----RAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~-la~g~~~g~~vw~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      .+|++=|+++.|+|.+.. |+++.++...+|..+...-+..     ...+  ..+.....++++...+++.|     .-|
T Consensus       264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g-----~~G  338 (764)
T KOG1063|consen  264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG-----RTG  338 (764)
T ss_pred             cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEec-----ccC
Confidence            378888999999999954 5555566679998765532221     1111  12244455555544344432     468


Q ss_pred             eEEEEECCCC-CEEEE--EE-cCCceeEEEEcC--CeEEEEE-CCeEEEEECC-CCeeeeeecC-CCCCceEEEEeeCCC
Q 019672           76 RLCLFNTTTG-TALRE--LN-FLTSILAVRLNK--KRLVIVL-REKTYIYDAN-TLAILDTIDT-VPNLKGLCAFSPSLN  146 (337)
Q Consensus        76 ~v~iwd~~~~-~~~~~--~~-~~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~  146 (337)
                      ..++|-.+.. ....+  +. |-..|.+|.|+|  .+++.++ |.+-++|--- ..+.-+++.- .-+...+.|++.-+.
T Consensus       339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~  418 (764)
T KOG1063|consen  339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE  418 (764)
T ss_pred             cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence            8999983332 22222  22 334799999985  4444444 8888888654 1122344421 123334556665442


Q ss_pred             ccEEEEcCCCCccEEEEEEccC-------------------------------------------Ccc----c-------
Q 019672          147 ACFLAVPASTTKGSVLVYNVME-------------------------------------------LHS----H-------  172 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~-------------------------------------------~~~----~-------  172 (337)
                      ...+++++  +...+++|+...                                           +..    .       
T Consensus       419 ~~~FVSgA--dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  419 DLQFVSGA--DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             Cceeeecc--cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            33344433  456667776521                                           000    0       


Q ss_pred             ---------------------------ccCceEEEEeCCCCCEEEEEeCC----CcEEEEEEcCCCceeEeeccCCccee
Q 019672          173 ---------------------------CEAPLAAIVLSSNGMYIATASEQ----GTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       173 ---------------------------~~~~i~~~~~s~dg~~lat~s~d----g~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                                                 |...|.+++.||+|+++||++..    ..+|++|+..+-..++++.  .|.-.
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~--~HsLT  574 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE--GHSLT  574 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec--ccceE
Confidence                                       00568999999999999999854    2468999999988887774  34567


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS  301 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~  301 (337)
                      |+.|+|||||+   +|++.|.|.++.+|..........     . +. .+..+..-+|+..          +.|+..+.+
T Consensus       575 VT~l~FSpdg~---~LLsvsRDRt~sl~~~~~~~~~e~-----~-fa-~~k~HtRIIWdcs----------W~pde~~Fa  634 (764)
T KOG1063|consen  575 VTRLAFSPDGR---YLLSVSRDRTVSLYEVQEDIKDEF-----R-FA-CLKAHTRIIWDCS----------WSPDEKYFA  634 (764)
T ss_pred             EEEEEECCCCc---EEEEeecCceEEeeeeecccchhh-----h-hc-cccccceEEEEcc----------cCcccceeE
Confidence            99999999999   999999999999999754432211     0 11 1222333455553          356668899


Q ss_pred             EEEeCCcEEEEEEecC
Q 019672          302 VITYNGYFVEYIFSIN  317 (337)
Q Consensus       302 ~~~~dg~~~~~~~~~~  317 (337)
                      +++-|.+|.+|.....
T Consensus       635 TaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  635 TASRDKKVKVWEEPDL  650 (764)
T ss_pred             EecCCceEEEEeccCc
Confidence            9999999999998666

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.63  E-value=1.6e-13  Score=126.72  Aligned_cols=289  Identities=13%  Similarity=0.111  Sum_probs=165.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEE-cCCceEEEeCCCCc----EEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            4 QSSSYPVFFVSFNQDNSGFALS-TKDGFKIFDSSTGR----LCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g-~~~g~~vw~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      ++|-..|..++|+|.|++|.+. .+..-|+|-.-..+    .+...+  ++++.++++...  -+.+++++     ..+.
T Consensus       358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~--~~~FVSgA-----dEKV  430 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE--DLQFVSGA-----DEKV  430 (764)
T ss_pred             ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC--Cceeeecc-----ccee
Confidence            4788899999999999996655 45556887543222    122222  344555555543  34455653     5678


Q ss_pred             EEEEECCCCC----------E---EEEEEcCCceeEEEEcCCeEEE-EE-CCeE--EEEEC------------CCCeeee
Q 019672           77 LCLFNTTTGT----------A---LRELNFLTSILAVRLNKKRLVI-VL-REKT--YIYDA------------NTLAILD  127 (337)
Q Consensus        77 v~iwd~~~~~----------~---~~~~~~~~~v~~i~~~~~~~~v-~~-d~~i--~i~d~------------~~~~~~~  127 (337)
                      +|+++...+-          +   .........|-.+-++.+-+.- .. ++..  .-+..            .....+.
T Consensus       431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq  510 (764)
T KOG1063|consen  431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ  510 (764)
T ss_pred             eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence            8998864320          0   0111112233333333322221 00 1100  00111            0000010


Q ss_pred             e--e-----cCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEE
Q 019672          128 T--I-----DTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATA  192 (337)
Q Consensus       128 ~--~-----~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~  192 (337)
                      .  +     +...+...+.+++.+|++.++|++-..   +--.|++|+..+-...     |.-.|+.++|||||++|+++
T Consensus       511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv  590 (764)
T KOG1063|consen  511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV  590 (764)
T ss_pred             HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence            0  0     111234567888889999999987521   2356899998876543     44789999999999999999


Q ss_pred             eCCCcEEEEEEcCCCceeEeec---cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc
Q 019672          193 SEQGTIIRVFLVSEATKSYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS  269 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~---~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~  269 (337)
                      |.|.+ ..+|........ .++   ...|..-|.++.|+||++   ++||+|.|.+|+||........        ++..
T Consensus       591 sRDRt-~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~~d~--------~i~~  657 (764)
T KOG1063|consen  591 SRDRT-VSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDLRDK--------YISR  657 (764)
T ss_pred             ecCce-EEeeeeecccch-hhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCchhh--------hhhh
Confidence            99987 589998654321 121   223455699999999999   9999999999999998765321        1111


Q ss_pred             cccccceeecccccceeeeeccC-CCc-ccCEEEEEEeCCcEEEEEEecCC
Q 019672          270 ILPESVNEVLDPADHHVLRNAFP-AGV-KRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       270 ~~~~~~~~~w~~~~~~~~~~~~~-~~~-~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      +....+...      .-.+...+ ... +...+.+|-..|.+.+|+.+.++
T Consensus       658 ~a~~~~~~a------VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~  702 (764)
T KOG1063|consen  658 FACLKFSLA------VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH  702 (764)
T ss_pred             hchhccCCc------eeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence            100000000      00011111 122 23467889999999999987443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=2.5e-14  Score=125.21  Aligned_cols=194  Identities=15%  Similarity=0.196  Sum_probs=137.3

Q ss_pred             EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-CEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeee
Q 019672           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAIL  126 (337)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~  126 (337)
                      .++++.+++..++..+       .|+++|+|++..- ....+..++.+|.++.|+++...+++  .+..+||+++++..+
T Consensus       148 k~vaf~~~gs~latgg-------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeecc-------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence            3455555555555544       5999999995444 44455677889999999999855554  449999999998655


Q ss_pred             eeecCCCCC--ceEEEEeeCC--CccEEEEcCCCCccEEEEEEccCCcc---------ccc-CceEEEEeCCCCCEEEEE
Q 019672          127 DTIDTVPNL--KGLCAFSPSL--NACFLAVPASTTKGSVLVYNVMELHS---------HCE-APLAAIVLSSNGMYIATA  192 (337)
Q Consensus       127 ~~~~~~~~~--~~~~~~~~~~--~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~-~~i~~~~~s~dg~~lat~  192 (337)
                      .........  ...|-+..++  +..++|+.-. .-+.|..||+...+.         ... ..|+++++|+||+++|.|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            554321111  1123343333  2334444432 345677777643322         112 689999999999999999


Q ss_pred             eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +.||.+ -|++..+.+.++-.++. |...|+.|.|+||.+   ++++-|.+.+++|..+...+.
T Consensus       300 T~dGsV-ai~~~~~lq~~~~vk~a-H~~~VT~ltF~Pdsr---~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  300 TMDGSV-AIYDAKSLQRLQYVKEA-HLGFVTGLTFSPDSR---YLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             ccCCcE-EEEEeceeeeeEeehhh-heeeeeeEEEcCCcC---cccccccCCceeEEEEeeccc
Confidence            999984 79999999998877654 466899999999999   999999999999999876443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=7.2e-13  Score=114.42  Aligned_cols=211  Identities=13%  Similarity=0.119  Sum_probs=146.5

Q ss_pred             ceEEEEECCCCCEEEEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           75 RRLCLFNTTTGTALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      ...+++........... .....|..+.|+...++++.   ...+++++++....+..+..+   ..++++..+.+  .|
T Consensus        26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr~--RL  100 (391)
T KOG2110|consen   26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNRK--RL  100 (391)
T ss_pred             CceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEccc--eE
Confidence            44666665543321111 12235677778877777776   246999999888777776543   35778887755  33


Q ss_pred             EEcCCCCccEEEEEEccCCccccc--------CceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ++.-   ...|.|||+++++.+|+        ..+.++++++.+.+||.-+  ..|. |.|||+.+-+....+.  .|..
T Consensus       101 vV~L---ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd-V~l~d~~nl~~v~~I~--aH~~  174 (391)
T KOG2110|consen  101 VVCL---EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD-VVLFDTINLQPVNTIN--AHKG  174 (391)
T ss_pred             EEEE---cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCce-EEEEEcccceeeeEEE--ecCC
Confidence            3332   34599999999998876        3355566666667988643  2466 5799999988888775  4678


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCc-EEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCE
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS  299 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~-v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  299 (337)
                      ++-+|+|||+|.   +||++|+.|| ||||.+..+....      .|..++.|..             ...+.|+++...
T Consensus       175 ~lAalafs~~G~---llATASeKGTVIRVf~v~~G~kl~------eFRRG~~~~~-------------IySL~Fs~ds~~  232 (391)
T KOG2110|consen  175 PLAALAFSPDGT---LLATASEKGTVIRVFSVPEGQKLY------EFRRGTYPVS-------------IYSLSFSPDSQF  232 (391)
T ss_pred             ceeEEEECCCCC---EEEEeccCceEEEEEEcCCccEee------eeeCCceeeE-------------EEEEEECCCCCe
Confidence            899999999999   9999999999 7999997664321      1111222211             233455778899


Q ss_pred             EEEEEeCCcEEEEEEecCC
Q 019672          300 VSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       300 l~~~~~dg~~~~~~~~~~~  318 (337)
                      |.+.+..++|++|.|+...
T Consensus       233 L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEecCCCeEEEEEecccc
Confidence            9999999999999997654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=1.3e-13  Score=132.71  Aligned_cols=234  Identities=14%  Similarity=0.203  Sum_probs=154.2

Q ss_pred             CCCCeEEEEEc--CCCCEEEEEcCCce-EEEe-CCC----CcEEEEEe---e------CCEEEEEEccCCCEEEEEeCCC
Q 019672            6 SSYPVFFVSFN--QDNSGFALSTKDGF-KIFD-SST----GRLCYERA---V------GAFSIVEMLYSSSLLAIVGAGE   68 (337)
Q Consensus         6 ~~~~v~~~~fs--~dg~~la~g~~~g~-~vw~-~~~----~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~g~   68 (337)
                      ....|+.+.+=  .|..++.+|+.||+ |||+ ..+    -+++....   .      +.-.++++...+..+ +++|  
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~L-l~tG-- 1184 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHL-LVTG-- 1184 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeE-EecC--
Confidence            45568888774  35567889999986 9995 222    23332221   0      111344554444444 4455  


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEc--CCeEEEEE--CCeEEEEECCCCe---eeeeecCCCCCceEE
Q 019672           69 QPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLN--KKRLVIVL--REKTYIYDANTLA---ILDTIDTVPNLKGLC  139 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~---~~~~~~~~~~~~~~~  139 (337)
                          .-+.|+|||..+.+....+...+  -|+++.-+  ...+++++  ||.+++||.+...   .+...+.+.....++
T Consensus      1185 ----d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1185 ----DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred             ----CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence                26899999999888888776655  45555432  22344444  9999999997542   344445554444466


Q ss_pred             EEeeCCCccE-EEEcCCCCccEEEEEEccCCccc-------cc--C-ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          140 AFSPSLNACF-LAVPASTTKGSVLVYNVMELHSH-------CE--A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       140 ~~~~~~~~~~-la~~~~~~dg~v~i~d~~~~~~~-------~~--~-~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      -++..+.+.. |++++  .+|.|++||++.....       +-  + .++++..+++...+|+|+. + .|+||++. |+
T Consensus      1261 ~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GE 1335 (1387)
T ss_pred             eEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hh
Confidence            6665543333 55555  6999999999974221       11  3 5999999999999999998 5 47999985 55


Q ss_pred             eeEeeccC-----CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          209 KSYSFRRG-----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       209 ~~~~~~~~-----~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .+..++..     .....+.|++|+|---   +||+|+.|.+|.||..++.
T Consensus      1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCc
Confidence            54444321     1123478999999987   9999999999999987654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.1e-13  Score=115.51  Aligned_cols=196  Identities=13%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEE--EEE-CCeEEE
Q 019672           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLV--IVL-REKTYI  117 (337)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~--v~~-d~~i~i  117 (337)
                      .+.+.....++.+...+.++++..       .+|.|.|||+.|...-..+..+ .+|.+++|++++-.  .++ |..|.+
T Consensus        19 ~tld~~~a~~~~Fs~~G~~lAvGc-------~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l   91 (405)
T KOG1273|consen   19 HTLDNPLAECCQFSRWGDYLAVGC-------ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL   91 (405)
T ss_pred             eeccCCccceEEeccCcceeeeec-------cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence            334333334444544455555433       5999999999987765555544 49999999987533  333 889999


Q ss_pred             EECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--ccccc-------CceEEEEeCCCCCE
Q 019672          118 YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSHCE-------APLAAIVLSSNGMY  188 (337)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~~~~~-------~~i~~~~~s~dg~~  188 (337)
                      ||+..+.+++.+... .+.--+.+.+...+..+|+.-. ..  -.+.++...  ..+..       ..-.+..|++.|++
T Consensus        92 wDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~-~s--p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y  167 (405)
T KOG1273|consen   92 WDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIME-ES--PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY  167 (405)
T ss_pred             EeccCCCceeEEEcc-CccceeeeccccCCeEEEEEec-CC--cEEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence            999999999888753 3445556666666667776542 22  333333322  22211       22334578999999


Q ss_pred             EEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          189 IATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       189 lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |.+|...|. +.++|..+-+++..++... ...|..+.|+..|.   +|+..+.|..|+.|+++.
T Consensus       168 IitGtsKGk-llv~~a~t~e~vas~rits-~~~IK~I~~s~~g~---~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  168 IITGTSKGK-LLVYDAETLECVASFRITS-VQAIKQIIVSRKGR---FLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEecCcce-EEEEecchheeeeeeeech-heeeeEEEEeccCc---EEEEecCCceEEEEehhh
Confidence            999999998 5799999999988886432 35689999999999   999999999999999874

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3.1e-13  Score=117.45  Aligned_cols=293  Identities=10%  Similarity=0.059  Sum_probs=182.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC------cEEEE-EeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCc
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------RLCYE-RAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~------~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~   75 (337)
                      .|.+-|+.+.|+.++++|++|+++. ++||+++.-      +.+.- .+.|...+.++.|+. |..++.++      .++
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~  127 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWG  127 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccc
Confidence            4567799999999999999999986 699997532      11211 112223445555655 44444444      599


Q ss_pred             eEEEEECCCCCEEEEEEcCC---ceeEEEEcC--CeEEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCcc
Q 019672           76 RLCLFNTTTGTALRELNFLT---SILAVRLNK--KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~~---~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      +|.+-|+++.+.+..+.+..   .|..+..+|  +.+++++ ++.|.+||++..+ ...-+.....+......-++|...
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            99999999998887776654   788877766  4455555 7899999998654 222222112223344445566554


Q ss_pred             E-EEEcCCCCccEEEEEEccCCccc----------cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          149 F-LAVPASTTKGSVLVYNVMELHSH----------CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       149 ~-la~~~~~~dg~v~i~d~~~~~~~----------~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      . |++.+  ..+-+.+||.+.....          +.  ..-..+.|+|+|+.|.+--..-.- -+||+-+..+ ..|+.
T Consensus       208 ~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~~D~~S~R~-~V~k~  283 (609)
T KOG4227|consen  208 ALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LYFDFISQRC-FVLKS  283 (609)
T ss_pred             eeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EEeeeecccc-eeEec
Confidence            4 45554  4677999999865431          11  234678899999988765332222 3688876433 22322


Q ss_pred             CCcc------eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC---CCccccccccccccc--cee-eccccc
Q 019672          216 GTYP------STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR---GGRTSSILGSILPES--VNE-VLDPAD  283 (337)
Q Consensus       216 ~~~~------~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~---~~~~~~~~~~~~~~~--~~~-~w~~~~  283 (337)
                      .+.+      ..|.+++|--|-    .+++||++-.|++|.+....+.-.   ..+..    ...|..  +.. ..-..+
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~----~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~----~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY----TVATGSDHWGIHIWKLPRANDSYGFTQIGHDE----EEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce----eeeccCcccceEEEecCCCccccCccccCcch----hhCchhheecceeEEEec
Confidence            2222      358899998665    599999999999999976544211   00000    011110  111 122233


Q ss_pred             ceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          284 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ++-+.+.+.+.+.++.|++.+.+..+++|.=.
T Consensus       356 HRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  356 HRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ccccccceeecCCcceEeccchhhheeccccc
Confidence            45556777788888888888899999999543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=1.1e-12  Score=110.81  Aligned_cols=243  Identities=14%  Similarity=0.167  Sum_probs=145.6

Q ss_pred             EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE----EEEEE-cCCceeEEEEc-CC-e--EEEEE-CCeEEEEE
Q 019672           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA----LRELN-FLTSILAVRLN-KK-R--LVIVL-REKTYIYD  119 (337)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~----~~~~~-~~~~v~~i~~~-~~-~--~~v~~-d~~i~i~d  119 (337)
                      -.+.+.|.+..++.++       .|.+|+|||.+...-    ..... +.+.|..|.|. |. +  ++++. |+++.||.
T Consensus        17 hdVs~D~~GRRmAtCS-------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCS-------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             eeeeecccCceeeecc-------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            3445666677777665       499999999754432    22333 45688888884 32 2  33333 99999997


Q ss_pred             CCCC---------eeeeeecCCCCCceEE--EEeeCCCccEEEEcCCCCccEEEEEEccCCccc----------------
Q 019672          120 ANTL---------AILDTIDTVPNLKGLC--AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----------------  172 (337)
Q Consensus       120 ~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----------------  172 (337)
                      =...         ....++.  .....++  .|+|..-+..+|+++  .||.++||++.....+                
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~--DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLV--DSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             ecccccccccceeEEEEEee--cCCcceeEEEecchhcceEEEEec--cCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            5211         1112222  1222343  555555678899988  5999999987543211                


Q ss_pred             --ccCceEEEEeCCC---CCEEEEEeCC-----CcEEEEEEcCCCc----eeEeeccCCcceeEEEEEeecCC-CcccEE
Q 019672          173 --CEAPLAAIVLSSN---GMYIATASEQ-----GTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM-QFQDIL  237 (337)
Q Consensus       173 --~~~~i~~~~~s~d---g~~lat~s~d-----g~~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~fs~dg-~~~~~l  237 (337)
                        +..+..|+.|+|.   ..+||.|+.+     +. ++||....+.    .+.++.  .+..+|++|+|.|+- ....+|
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~l  242 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLL  242 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeE
Confidence              1266889999974   4589998877     24 3688765432    233443  356789999999972 211279


Q ss_pred             EEEeCCCcEEEEecCCCcccCC------CCccccc---ccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672          238 VATSSSGSLHVFSPGFAINQRR------GGRTSSI---LGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  308 (337)
Q Consensus       238 as~s~dg~v~iw~l~~~~~~~~------~~~~~~~---~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  308 (337)
                      |+++.|| |+||.++....+..      ......+   ....+..+-.++|...-          ..-+..|.+.+.||.
T Consensus       243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w----------NmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW----------NMTGTILSSTGDDGC  311 (361)
T ss_pred             EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE----------eeeeeEEeecCCCce
Confidence            9999999 99999985332110      0000010   01112233345555422          122356778888999


Q ss_pred             EEEEEEecC
Q 019672          309 FVEYIFSIN  317 (337)
Q Consensus       309 ~~~~~~~~~  317 (337)
                      ++.|.-.-.
T Consensus       312 VRLWkany~  320 (361)
T KOG2445|consen  312 VRLWKANYN  320 (361)
T ss_pred             eeehhhhhh
Confidence            999976433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.59  E-value=1e-11  Score=113.87  Aligned_cols=237  Identities=16%  Similarity=0.235  Sum_probs=165.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCc-EEEEEee-C--CEEEEEE-ccCCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR-LCYERAV-G--AFSIVEM-LYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~-~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      ..+...|.++.|++.+..++.++.+ .+.+|+..... ....... .  .+..... ..+.+..+....     ..|+.+
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~  136 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTV  136 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccE
Confidence            3567889999999999998888754 57999988775 4444332 1  2333343 333442333322     148999


Q ss_pred             EEEECCC-CCEEEEEEc-CCceeEEEEcCCeE--EEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-EE
Q 019672           78 CLFNTTT-GTALRELNF-LTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FL  150 (337)
Q Consensus        78 ~iwd~~~-~~~~~~~~~-~~~v~~i~~~~~~~--~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  150 (337)
                      .+||... ......+.. ...|..+.++++..  +...  ++.+++|++..+..+..+..+..  .+.++.+.|++. .+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~  214 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLI  214 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcCCcceEE
Confidence            9999987 555555544 45788899988763  3332  78999999998777777765333  455566657766 44


Q ss_pred             EEcCCCCccEEEEEEccCCcccc-c-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-eEeeccCCcceeEE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC-E-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIF  223 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~-~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~  223 (337)
                      +.++  .|+.|.+||...+.... .     ... ...|+|++.++++++.|+. +++|++..... +..+ .+ +...|.
T Consensus       215 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~-~~-~~~~v~  288 (466)
T COG2319         215 ASGS--SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTL-SG-HSSSVL  288 (466)
T ss_pred             EEec--CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEE-ec-CCccEE
Confidence            4434  59999999988555443 1     222 2289999999999999997 69999987765 4444 22 356799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ++.|+|++.   .+++++.|+.+++|++.....
T Consensus       289 ~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         289 SVAFSPDGK---LLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             EEEECCCCC---EEEEeeCCCcEEEEEcCCCce
Confidence            999999888   788899999999998876543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=2.6e-12  Score=121.81  Aligned_cols=288  Identities=13%  Similarity=0.165  Sum_probs=181.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEe-CC-CC-cE---EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFD-SS-TG-RL---CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~-~~-~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      |..+++|.+++|.++++|+|-.+| +.+|. .. .. +.   ++.++...+..+.+..++..  +.+||     ..+.+.
T Consensus       204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~--LlSGG-----~E~VLv  276 (792)
T KOG1963|consen  204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY--LLSGG-----REGVLV  276 (792)
T ss_pred             hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce--Eeecc-----cceEEE
Confidence            344589999999999999998877 68995 33 11 11   23333345555555444444  44554     578999


Q ss_pred             EEECCCCCEEEEEEcCCceeEEEEcCCeEEE---EECCeEEEEECCCCeeeeeecCCCCC--------ceE-EEEeeCCC
Q 019672           79 LFNTTTGTALRELNFLTSILAVRLNKKRLVI---VLREKTYIYDANTLAILDTIDTVPNL--------KGL-CAFSPSLN  146 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v---~~d~~i~i~d~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~  146 (337)
                      +|.+++++...-....++|..+.++++.-..   ..|+.|.+-...++....++.+...+        .++ ..++.+|.
T Consensus       277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC
Confidence            9999999966666678899999998875433   33999999988777666565432221        222 34555664


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc----------------cCceEEEEeCCCCCEEEEEeC--------CCc-EEEE
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC----------------EAPLAAIVLSSNGMYIATASE--------QGT-IIRV  201 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~----------------~~~i~~~~~s~dg~~lat~s~--------dg~-~i~v  201 (337)
                      -..++..+  ..|.|++||+.+.+...                .-.+++++.+..|.+++|.-.        ||. .+|+
T Consensus       357 ~~~~vln~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  357 TNSLVLNG--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             CCceeecC--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            45666777  48999999998655321                146889999999999999742        332 3588


Q ss_pred             EEcCCCcee----EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccccee
Q 019672          202 FLVSEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  277 (337)
Q Consensus       202 wd~~~~~~~----~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (337)
                      |-......-    .++...|..+.+..+.++|...  +..++++.||.++||-+...++..+.  ++.|.......+   
T Consensus       435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~KiW~~~~~~n~~k~--~s~W~c~~i~sy---  507 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDFKIWVFTDDSNIYKK--SSNWTCKAIGSY---  507 (792)
T ss_pred             EEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeEEEEEEecccccCcC--ccceEEeeeecc---
Confidence            976544432    2233333333333333333332  37999999999999999776664421  112111111100   


Q ss_pred             ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                            ++.-..+..+..+ ..+++.+.|+.+.+|+.+.
T Consensus       508 ------~k~~i~a~~fs~d-Gslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 ------HKTPITALCFSQD-GSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             ------ccCcccchhhcCC-CcEEEEecCCEEEEecCCC
Confidence                  0011122233434 3899999999999999876

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.58  E-value=3.7e-13  Score=112.82  Aligned_cols=226  Identities=12%  Similarity=0.172  Sum_probs=151.6

Q ss_pred             CCCCCCeEEEEEcCCCC----EEEEEcCCceEEEeCCCC--cEEE----EEee---CCEEEEEEcc---CCCEEEEEeCC
Q 019672            4 QSSSYPVFFVSFNQDNS----GFALSTKDGFKIFDSSTG--RLCY----ERAV---GAFSIVEMLY---SSSLLAIVGAG   67 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~----~la~g~~~g~~vw~~~~~--~~~~----~~~~---~~~~~~~~~~---~~~~~~~~~~g   67 (337)
                      ..+..|++-+.|.||..    -|.+.+.+.+|+|.+...  +...    ....   .......+.+   +++++...+  
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS--  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS--  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence            36788999999999873    255566788999987642  2211    1110   1112233333   345555544  


Q ss_pred             CCCCCCCceEEEEECCCCCE----EEEEEcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecCCCC-CceE
Q 019672           68 EQPSLSPRRLCLFNTTTGTA----LRELNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPN-LKGL  138 (337)
Q Consensus        68 ~~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~  138 (337)
                           -|.+..|||++++..    ...+.|..+|.+|+|..+   .++.++ ||++++||++..+.-..+...++ ...+
T Consensus       171 -----iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL  245 (364)
T KOG0290|consen  171 -----IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL  245 (364)
T ss_pred             -----ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence                 499999999999732    334678889999999763   333333 99999999998765544443444 3456


Q ss_pred             EEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCce-
Q 019672          139 CAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATK-  209 (337)
Q Consensus       139 ~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~-  209 (337)
                      .-+++++. -.++|+-.. ....|.|.|++....      .|++.|+.++|.|. ...|+|+++|... -+||+...-. 
T Consensus       246 lRLswnkqDpnymATf~~-dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~  323 (364)
T KOG0290|consen  246 LRLSWNKQDPNYMATFAM-DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRE  323 (364)
T ss_pred             eeeccCcCCchHHhhhhc-CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE-EEEeccccccc
Confidence            67776553 346676654 467899999987543      26699999999994 5689999999874 6999975432 


Q ss_pred             -----eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          210 -----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       210 -----~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                           +-.+.   ..++|+.+.|+|...  ++++.+...
T Consensus       324 ~~~dPilay~---a~~EVNqi~Ws~~~~--Dwiai~~~k  357 (364)
T KOG0290|consen  324 NGEDPILAYT---AGGEVNQIQWSSSQP--DWIAICFGK  357 (364)
T ss_pred             CCCCchhhhh---ccceeeeeeecccCC--CEEEEEecC
Confidence                 11111   235799999997655  488888765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.58  E-value=1.6e-14  Score=135.70  Aligned_cols=240  Identities=15%  Similarity=0.168  Sum_probs=166.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      +|-+.|+|+.|.+.|.++++|+++.+ +||..++..++....++.-.+..+.-+.+-+...++     +.|..|++|-+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa-----S~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA-----SNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc-----ccCceEEEEecC
Confidence            46678999999999999999999985 999999998888776666566666555554444444     368999999999


Q ss_pred             CCCEEEEEE-cCCceeEEEEcCCeEEEEECCeEEEEECCCC--------------eeeeeecCCC-----------CC--
Q 019672           84 TGTALRELN-FLTSILAVRLNKKRLVIVLREKTYIYDANTL--------------AILDTIDTVP-----------NL--  135 (337)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~--------------~~~~~~~~~~-----------~~--  135 (337)
                      .+.++.-+. |.+.|++|+|+|.. ....||++++||.+-.              .+...+....           ..  
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            999887654 55699999999876 2222899999998711              0000000000           00  


Q ss_pred             -----------ceEEEEeeCCCc-cEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEE-EEEeCCCc
Q 019672          136 -----------KGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYI-ATASEQGT  197 (337)
Q Consensus       136 -----------~~~~~~~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~l-at~s~dg~  197 (337)
                                 ..+.-...+.+. .+.+++-  .+..+.+|++.++...|-     .++..+.++|-...+ .+++.||.
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs  419 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS  419 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence                       000000011111 1112221  356778899999877654     789999999965554 47889998


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      .| |||+-.|..++....+  ...+..-+||+||+   .++....-|.+.|+.....+..+
T Consensus       420 t~-iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  420 TI-IWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             eE-eeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCCCcccc
Confidence            64 9999999888777655  34566779999999   88888888999999876554433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=1.2e-12  Score=119.42  Aligned_cols=238  Identities=15%  Similarity=0.179  Sum_probs=157.7

Q ss_pred             EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe----EEEEECCeEEE
Q 019672           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR----LVIVLREKTYI  117 (337)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~----~~v~~d~~i~i  117 (337)
                      +..+.+-+..+...+++.++  ++|+     .||+|+||.+.+|+++.++.+.+.|.+|+|+|..    ++++.++.+.|
T Consensus       396 yrGHtg~Vr~iSvdp~G~wl--asGs-----dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWL--ASGS-----DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             EeccCCeEEEEEecCCccee--eecC-----CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEE
Confidence            33344445555555555554  4553     6999999999999999999999999999998753    34444555555


Q ss_pred             EECCCCe---------eeeeecCC--------------------------CCCceEEEEeeCCCccEEEEcCC-CCccEE
Q 019672          118 YDANTLA---------ILDTIDTV--------------------------PNLKGLCAFSPSLNACFLAVPAS-TTKGSV  161 (337)
Q Consensus       118 ~d~~~~~---------~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~-~~dg~v  161 (337)
                      -+-.-|.         .+......                          .++..+..+.++..|.||++... .....|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            5432221         11111000                          01112334566777889886542 124678


Q ss_pred             EEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672          162 LVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       162 ~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~  236 (337)
                      .|.++...+..     ..+.|.++.|+|.-.+|+.++...  |||||+...++++++..+.  -.|.+++.+|.|.   -
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg~--kwiS~msihp~GD---n  621 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTGS--KWISSMSIHPNGD---N  621 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcCC--eeeeeeeecCCCC---e
Confidence            89998765543     238899999999999999998863  6999999888777775442  3589999999998   8


Q ss_pred             EEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          237 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      |+.|+.|+.+-.||++-...+-+..   .    .-.+   .+          ..++++..-+.+++++.||++.+|-
T Consensus       622 li~gs~d~k~~WfDldlsskPyk~l---r----~H~~---av----------r~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  622 LILGSYDKKMCWFDLDLSSKPYKTL---R----LHEK---AV----------RSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEecCCCeeEEEEcccCcchhHHh---h----hhhh---hh----------hhhhhccccceeeeecCCCcEEEEe
Confidence            9999999999999998665432100   0    0000   11          1223344446677888889999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.54  E-value=2.8e-12  Score=107.58  Aligned_cols=233  Identities=13%  Similarity=0.144  Sum_probs=155.9

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCC--------ceEEEeCCCC---------cEEEEE---eeCCEEEEEEccCCCEEEE
Q 019672            5 SSSYPVFFVSFNQDNS-GFALSTKD--------GFKIFDSSTG---------RLCYER---AVGAFSIVEMLYSSSLLAI   63 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~-~la~g~~~--------g~~vw~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~   63 (337)
                      .+.++|+.++=+|-.+ .|++..++        +..||.+...         +.+...   ..+.+.++.+.+++..++.
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas  140 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS  140 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence            4567888888888654 46665441        2369976432         111112   2356778888887777765


Q ss_pred             EeCCCCCCCCCceEEEEECCCCCE-EEEEEc------CCceeEEEEcC--C--eEEEEECCeEEEEECCCCeeeeeecCC
Q 019672           64 VGAGEQPSLSPRRLCLFNTTTGTA-LRELNF------LTSILAVRLNK--K--RLVIVLREKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        64 ~~~g~~~~~~d~~v~iwd~~~~~~-~~~~~~------~~~v~~i~~~~--~--~~~v~~d~~i~i~d~~~~~~~~~~~~~  132 (337)
                      +        .|+.|.+|++..+.. +.++..      .....+-+|+|  +  .+.+..|+++..||+++++....|.. 
T Consensus       141 m--------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d-  211 (370)
T KOG1007|consen  141 M--------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED-  211 (370)
T ss_pred             e--------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh-
Confidence            5        378999999987765 333322      22345555655  3  34444599999999999988777753 


Q ss_pred             CCCceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEc
Q 019672          133 PNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~  204 (337)
                      .+...+..+.++|+.+ +|+++|  .||.|+|||.++.+..      |...|.++.|+|. .++|.+|+.|..+ .+|..
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V-~Lsca  288 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV-NLSCA  288 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee-EEEec
Confidence            2334566777777765 466666  6999999999876542      3478999999994 4688899999875 58865


Q ss_pred             CCCc---e--------------------------eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          205 SEAT---K--------------------------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       205 ~~~~---~--------------------------~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..-.   .                          +.++.  .|...|++++||.-..-  .+|+-|.||.+-|=.+..
T Consensus       289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPW--iFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPW--IFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCe--eEEEeccCceEEeecCCh
Confidence            3211   0                          11221  23456999999988773  677889999998876653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.3e-13  Score=124.66  Aligned_cols=237  Identities=12%  Similarity=0.091  Sum_probs=152.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC--------cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      ++...|+.+.|.|-...|++++.+++ ++|+++..        +.++++..|.-.++++....+.--+.++|     -|+
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-----~Dg  366 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-----IDG  366 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-----cCc
Confidence            56677899999999999999999996 99999321        34566554444444444444433333333     599


Q ss_pred             eEEEEECCCCC----------EEEEE-EcCCceeEEEEc--CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672           76 RLCLFNTTTGT----------ALREL-NFLTSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAF  141 (337)
Q Consensus        76 ~v~iwd~~~~~----------~~~~~-~~~~~v~~i~~~--~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (337)
                      +|+.|++-.+.          ....+ .|...|+.++++  +++++.+. |+++++|+...... .++........-..+
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            99999654221          11222 344578888886  45666665 99999999876554 333322222222223


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCccc------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSH------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      .+-.-.....+++. .-+.-.++|+......            ....++-+..+|.+.+..++-+|+. ||++|..+++.
T Consensus       446 d~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~~~~~  523 (577)
T KOG0642|consen  446 DRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNKTGKI  523 (577)
T ss_pred             eeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccccccc
Confidence            32111111111111 1222223333222111            1155888999999999999999997 79999999999


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      +....  .+...++++++.|+|.   +|++++.||.|++|.+...
T Consensus       524 l~s~~--a~~~svtslai~~ng~---~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMV--AHKDSVTSLAIDPNGP---YLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chhee--eccceecceeecCCCc---eEEeecCCceeehhhccch
Confidence            87764  2455699999999999   9999999999999998643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.54  E-value=1e-12  Score=111.84  Aligned_cols=237  Identities=14%  Similarity=0.194  Sum_probs=153.3

Q ss_pred             CCCCCCCeEEEEEcCCC----CEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDN----SGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg----~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~   75 (337)
                      .+.+++..+-++|+-|-    -++|+|+..|+ +|.|+.+++..-....++-.+-++.+.+  ..+++.+.      .|.
T Consensus        85 D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~  158 (385)
T KOG1034|consen   85 DEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDH  158 (385)
T ss_pred             CCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCc
Confidence            44567778888997554    36888888886 9999999887655555555555554433  23444443      699


Q ss_pred             eEEEEECCCCCEEEEEE----cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC----CCCce-------
Q 019672           76 RLCLFNTTTGTALRELN----FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV----PNLKG-------  137 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~----~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~----~~~~~-------  137 (337)
                      +||+||+++..++.-+.    |...|+++.|+.++..+++   |.++++|++...+....++..    ++...       
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~  238 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK  238 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence            99999999999998764    3458999999876544443   889999999843222111100    00000       


Q ss_pred             ----E---EEEeeCC------CccEEEEcCCCCccEEEEEEccCC-cccc-------------c-----CceEE--EEeC
Q 019672          138 ----L---CAFSPSL------NACFLAVPASTTKGSVLVYNVMEL-HSHC-------------E-----APLAA--IVLS  183 (337)
Q Consensus       138 ----~---~~~~~~~------~~~~la~~~~~~dg~v~i~d~~~~-~~~~-------------~-----~~i~~--~~~s  183 (337)
                          .   ..+..++      -+.++.+-+.  ++.|..|..-.. ...|             +     ..|.-  .+|+
T Consensus       239 ~~fp~fst~diHrnyVDCvrw~gd~ilSksc--enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d  316 (385)
T KOG1034|consen  239 THFPDFSTTDIHRNYVDCVRWFGDFILSKSC--ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD  316 (385)
T ss_pred             cccccccccccccchHHHHHHHhhheeeccc--CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec
Confidence                0   0011110      0234555453  678999987211 1111             0     23333  4567


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          184 SNGMYIATASEQGTIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      |-++.||.|.+.|.+ .+||++..+..  .++......+.|...+||.||.   +|+...+|++|-=||-
T Consensus       317 ~~~~~la~gnq~g~v-~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs---~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  317 PWQKMLALGNQSGKV-YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS---ILVLVCDDGTVWRWDR  382 (385)
T ss_pred             HHHHHHhhccCCCcE-EEEECCCCCCccCceEEeccccceeeeeeecccCc---EEEEEeCCCcEEEEEe
Confidence            778999999999984 79999876652  2232222335699999999999   9999999999988874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.53  E-value=1.7e-12  Score=112.94  Aligned_cols=196  Identities=14%  Similarity=0.132  Sum_probs=131.9

Q ss_pred             cCCceeEEEEcCC-eEEEEE---CCeEEEEECCCCee-------eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           93 FLTSILAVRLNKK-RLVIVL---REKTYIYDANTLAI-------LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        93 ~~~~v~~i~~~~~-~~~v~~---d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      |..+|++++|+|- ..++++   |.+|.||++....+       +..+..|....+++++.+... ..|+++|+  |.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~--Dn~v  156 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS--DNTV  156 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC--CceE
Confidence            4568999999762 333343   67999999976533       344555555556666666443 35666774  8999


Q ss_pred             EEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672          162 LVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       162 ~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      .+|++.++..+    |...|.++.|+.||.+|+|++.|.. |||||.++++.+.+- .+|..+.-..+.|-.+|.   ++
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~---i~  231 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGK---IF  231 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeec-ccccCCCcceeEEeccCc---ee
Confidence            99999998754    4588999999999999999999987 799999999998876 344444445567778887   44


Q ss_pred             EEEe---CCCcEEEEecCCCcccCCC---CcccccccccccccceeecccccceeeeeccCCCcccCEE-EEEEeCCcEE
Q 019672          238 VATS---SSGSLHVFSPGFAINQRRG---GRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV-SVITYNGYFV  310 (337)
Q Consensus       238 as~s---~dg~v~iw~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~~~  310 (337)
                      -+|-   ++..+-+||-..-.++...   ..+++.   .+|     .|++..              +.| ++|-.||.|+
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~P-----FyD~dt--------------~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLP-----FYDPDT--------------SIVYLCGKGDSSIR  289 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCce---EEe-----eecCCC--------------CEEEEEecCCcceE
Confidence            4442   3467899987655443210   001110   111     233322              333 4778899999


Q ss_pred             EEEEecCC
Q 019672          311 EYIFSINN  318 (337)
Q Consensus       311 ~~~~~~~~  318 (337)
                      -|.+..+.
T Consensus       290 YyEit~d~  297 (472)
T KOG0303|consen  290 YFEITNEP  297 (472)
T ss_pred             EEEecCCC
Confidence            99996654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=5e-12  Score=106.12  Aligned_cols=232  Identities=13%  Similarity=0.185  Sum_probs=152.7

Q ss_pred             CCCeEEEEEc--CCCC-EEEEEcC-----CceEEE--eCCCCcEEEEEee---CCEEEEEEccCC-----CEEEEEeCCC
Q 019672            7 SYPVFFVSFN--QDNS-GFALSTK-----DGFKIF--DSSTGRLCYERAV---GAFSIVEMLYSS-----SLLAIVGAGE   68 (337)
Q Consensus         7 ~~~v~~~~fs--~dg~-~la~g~~-----~g~~vw--~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~g~   68 (337)
                      .-+++.+.|+  |+.+ +||.|+-     +.+.|-  |.++++.+...+.   .++..+.+.+++     .+++.     
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-----  118 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-----  118 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-----
Confidence            4468888898  4443 4888863     234333  4455555544321   223333444443     23333     


Q ss_pred             CCCCCCceEEEEECCC--CCEEE--------EEEcCCceeEEEEc---CCeEEEEE-CCeEEEEECCCCee---eeeecC
Q 019672           69 QPSLSPRRLCLFNTTT--GTALR--------ELNFLTSILAVRLN---KKRLVIVL-REKTYIYDANTLAI---LDTIDT  131 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~--~~~~~--------~~~~~~~v~~i~~~---~~~~~v~~-d~~i~i~d~~~~~~---~~~~~~  131 (337)
                          .+..+|+|.+..  ++...        +-.+..+++++.|+   ++.+.+++ |.+..|||+.++..   ..++-.
T Consensus       119 ----s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  119 ----SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             ----ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence                246899998763  22111        12345688888885   56666666 89999999988632   222333


Q ss_pred             CCCCceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCccc-------c-cCceEEEEeCC-CCCEEEEEeCCCcEEEE
Q 019672          132 VPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSH-------C-EAPLAAIVLSS-NGMYIATASEQGTIIRV  201 (337)
Q Consensus       132 ~~~~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~-------~-~~~i~~~~~s~-dg~~lat~s~dg~~i~v  201 (337)
                      |.  ..+..+++.. ...++|+.|  .||.|++||++...-.       . ..+...++|++ |-+++||-..|+.-|.|
T Consensus       195 HD--KEV~DIaf~~~s~~~FASvg--aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  195 HD--KEVYDIAFLKGSRDVFASVG--ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             cC--cceeEEEeccCccceEEEec--CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            33  3455555543 245788888  5999999999876421       1 26788999997 56689998888776779


Q ss_pred             EEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          202 FLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       202 wd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      .|++... .+.+++.  |.+.|+.++|.|...  ..|+++++|..+-|||+.+..
T Consensus       271 LDiR~P~tpva~L~~--H~a~VNgIaWaPhS~--~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRN--HQASVNGIAWAPHSS--SHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             EEecCCCcceehhhc--CcccccceEecCCCC--ceeeecCCcceEEEEeccccc
Confidence            9998754 4556643  577899999999887  599999999999999997643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.52  E-value=7.1e-12  Score=118.03  Aligned_cols=257  Identities=11%  Similarity=0.074  Sum_probs=154.9

Q ss_pred             eEEEeCCCC-cEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--E-----EEEEcCCceeEE
Q 019672           30 FKIFDSSTG-RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--L-----RELNFLTSILAV  100 (337)
Q Consensus        30 ~~vw~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~-----~~~~~~~~v~~i  100 (337)
                      +.||++... ...+... ...+.++.+.+....++++|.      .+|+|.+||++.+..  .     ..-.|..++.++
T Consensus       224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGC------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeec------cCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            468887654 2222222 244555565544444433333      589999999987654  2     223455688888


Q ss_pred             EEcCC-----eEEEEECCeEEEEECCCCee-eee--ecCC-------CCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672          101 RLNKK-----RLVIVLREKTYIYDANTLAI-LDT--IDTV-------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus       101 ~~~~~-----~~~v~~d~~i~i~d~~~~~~-~~~--~~~~-------~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      .|..+     .+.+++||.|..|+++.... ...  ....       ....+..++.+.+........|. ++|.|.--.
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-e~G~v~~~~  376 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-EEGKVYKGC  376 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-CCcEEEEEe
Confidence            87421     33344499999999865422 111  1111       12234555565443333333343 688887733


Q ss_pred             ---ccCCc----------ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCC
Q 019672          166 ---VMELH----------SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       166 ---~~~~~----------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                         .+...          ..|.++|.++.++|=+..+...+.|.+ +|||... ....+..+..  +...|++++|||-.
T Consensus       377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptr  453 (555)
T KOG1587|consen  377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTR  453 (555)
T ss_pred             ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEEcCcC
Confidence               22222          112399999999998776666666877 6999987 5555555543  24459999999988


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  311 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~  311 (337)
                      .  ..++++..||.|.||||......+...+.-.  ...++   ...|+.              .+..|++|...|.+++
T Consensus       454 p--avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~---~~~~s~--------------~g~~lavGd~~G~~~~  512 (555)
T KOG1587|consen  454 P--AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALT---RVRWSP--------------NGKLLAVGDANGTTHI  512 (555)
T ss_pred             c--eEEEEEcCCCceehhhhhccccCCccccccc--ccccc---eeecCC--------------CCcEEEEecCCCcEEE
Confidence            7  4899999999999999976544332111000  11111   123333              2378999999999999


Q ss_pred             EEEecC
Q 019672          312 YIFSIN  317 (337)
Q Consensus       312 ~~~~~~  317 (337)
                      |.+...
T Consensus       513 ~~l~~~  518 (555)
T KOG1587|consen  513 LKLSES  518 (555)
T ss_pred             EEcCch
Confidence            999543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=5.2e-11  Score=109.11  Aligned_cols=232  Identities=20%  Similarity=0.273  Sum_probs=159.9

Q ss_pred             CeEEEEE-cCCCC-EEEEEcC-Cc-eEEEeCCC-CcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            9 PVFFVSF-NQDNS-GFALSTK-DG-FKIFDSST-GRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         9 ~v~~~~f-s~dg~-~la~g~~-~g-~~vw~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+..+.+ ++++. .++..+. ++ +.+|+... .........  ..+..+.+.++...++..+.      .|+.+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~  184 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS------LDGTIKLWD  184 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC------CCCceEEEE
Confidence            5667777 88888 4444333 54 69999987 555444433  33444555555553333221      389999999


Q ss_pred             CCCCCEEEEEEc-CCceeEEEEcCCe--EEEE-E-CCeEEEEECCCCeeee-eecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGTALRELNF-LTSILAVRLNKKR--LVIV-L-REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~-~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ..+++.+..+.. ...|.++.++++.  +++. . |+.|++||...+..+. .+..+.... +.  .+.+++..+++++ 
T Consensus       185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~-  260 (466)
T COG2319         185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSPDGSLLASGS-  260 (466)
T ss_pred             cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE--eECCCCCEEEEec-
Confidence            998888877765 5589999998765  3333 2 7899999998777766 455544433 33  3445556667666 


Q ss_pred             CCccEEEEEEccCCcc------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          156 TTKGSVLVYNVMELHS------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                       .++.+++||+.....      .|...|.++.|+|++..+++++.|+. +++||..+...........+...+..+.|++
T Consensus       261 -~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (466)
T COG2319         261 -SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSP  338 (466)
T ss_pred             -CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCc-EEEEEcCCCceEEEeeecccCCceEEEEECC
Confidence             599999999986653      34588999999999999999999976 7999998887666554112233688888844


Q ss_pred             CCCcccEEEEE-eCCCcEEEEecCCCc
Q 019672          230 SMQFQDILVAT-SSSGSLHVFSPGFAI  255 (337)
Q Consensus       230 dg~~~~~las~-s~dg~v~iw~l~~~~  255 (337)
                      ++.   .++.+ ..|+.+++|++....
T Consensus       339 ~~~---~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         339 DGS---LLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCC---EEEEeecCCCcEEeeecCCCc
Confidence            424   55555 788999999987765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.51  E-value=2.5e-12  Score=121.12  Aligned_cols=233  Identities=11%  Similarity=0.096  Sum_probs=146.0

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcE--EEE----EeeCCEEEEEEccC---CCEEEEEeCCCCCCCCC
Q 019672            6 SSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRL--CYE----RAVGAFSIVEMLYS---SSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         6 ~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~--~~~----~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~d   74 (337)
                      ...+|+|+.|+|.. .++++|+.+| +-+||+..+..  ...    ...|...++.+.+.   .+.- +.++     +.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~-f~s~-----ssD  314 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE-FFSL-----SSD  314 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc-eEEE-----ecC
Confidence            56789999999866 5677888888 69999887654  211    11233333333322   2211 2222     259


Q ss_pred             ceEEEEECCCCCEEE-----E-E-------EcCCceeEEEE---cCCeEEEEE-CCeEEEEECCCCee--------eeee
Q 019672           75 RRLCLFNTTTGTALR-----E-L-------NFLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI--------LDTI  129 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~-----~-~-------~~~~~v~~i~~---~~~~~~v~~-d~~i~i~d~~~~~~--------~~~~  129 (337)
                      |+|..|+++.-....     . .       .-...++.++|   +++.+++++ .|.|.-=+-...+.        +..+
T Consensus       315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~  394 (555)
T KOG1587|consen  315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF  394 (555)
T ss_pred             CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence            999999876432210     0 1       11225677777   467888888 66766523222211        1122


Q ss_pred             cCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-CCccc-----ccCceEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 019672          130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELHSH-----CEAPLAAIVLSSNG-MYIATASEQGTIIRVF  202 (337)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-~~~~~-----~~~~i~~~~~s~dg-~~lat~s~dg~~i~vw  202 (337)
                      ..+  ...+.++..+|-...++.++.  |-+|+||... ....+     +...|++++|||-- ..+|++..||. |.||
T Consensus       395 ~~h--~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iW  469 (555)
T KOG1587|consen  395 ITH--IGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIW  469 (555)
T ss_pred             ccc--CcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehh
Confidence            333  345667777665555444442  8899999876 33322     12669999999964 47888888998 6999


Q ss_pred             EcCCCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          203 LVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       203 d~~~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      |+.....  +.+...  .....+.+.|+++|+   +|++|...|++++|++...
T Consensus       470 DLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~---~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  470 DLLQDDEEPVLSQKV--CSPALTRVRWSPNGK---LLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhccccCCcccccc--cccccceeecCCCCc---EEEEecCCCcEEEEEcCch
Confidence            9965433  222222  234467888999999   9999999999999999754

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=6.9e-12  Score=102.86  Aligned_cols=221  Identities=10%  Similarity=0.143  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-eEEEeCCC---------Cc-EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672           10 VFFVSFNQDNSGFALSTKDG-FKIFDSST---------GR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g-~~vw~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      |..-+++|-+++|++|...| +.++.+.+         ++ .+...+.++..+-.+.|....+ ++++       |+.|+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~L-ls~g-------dG~V~   84 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFL-LSGG-------DGLVY   84 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhe-eecc-------CceEE
Confidence            55568899999999999887 46665432         22 2333333443444444444443 3333       78999


Q ss_pred             EEECCCCCE------EEEEE--c-----C-CceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672           79 LFNTTTGTA------LRELN--F-----L-TSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAF  141 (337)
Q Consensus        79 iwd~~~~~~------~~~~~--~-----~-~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (337)
                      =|....-..      +.+..  .     + .+|.++.+.|  +.++.+. |+.++-||+++++..++++.|.+  .+-++
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD--YvH~v  162 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD--YVHSV  162 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc--eeeee
Confidence            998653221      11111  1     1 1577777764  4455554 88999999999999999987755  34343


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCccccc---------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      ..-..+..+.+++  +||++++||+++++.+..               ..|.+++.+.|  +|++|+.-.  +-+|+++.
T Consensus       163 v~R~~~~qilsG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--WlvCGgGp~--lslwhLrs  236 (325)
T KOG0649|consen  163 VGRNANGQILSGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--WLVCGGGPK--LSLWHLRS  236 (325)
T ss_pred             eecccCcceeecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--eEEecCCCc--eeEEeccC
Confidence            3312233566666  799999999999876432               44777777654  899887653  57999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .+....|..   ++++..+.|-.|     .+++++.-+.|.-|.+...
T Consensus       237 se~t~vfpi---pa~v~~v~F~~d-----~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  237 SESTCVFPI---PARVHLVDFVDD-----CVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             CCceEEEec---ccceeEeeeecc-----eEEEeccccceeeeeeccE
Confidence            998888753   567888899765     5777787788999987643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.51  E-value=2e-12  Score=112.82  Aligned_cols=140  Identities=17%  Similarity=0.229  Sum_probs=92.2

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcCC-ceEEEeCCCC-------cEEEE--E--eeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            7 SYPVFFVSFNQDNS-GFALSTKD-GFKIFDSSTG-------RLCYE--R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         7 ~~~v~~~~fs~dg~-~la~g~~~-g~~vw~~~~~-------~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ..||+++.|.+... .||+|+.| .+++|-++..       +..+.  +  +.+.+.++.+.++++.++..+       .
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~-------D   85 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG-------D   85 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC-------C
Confidence            57899999998776 78877655 5899965432       22222  2  224455556555555655443       4


Q ss_pred             CceEEEEECC--------C-----C-CEE--EEE-EcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCC
Q 019672           74 PRRLCLFNTT--------T-----G-TAL--REL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVP  133 (337)
Q Consensus        74 d~~v~iwd~~--------~-----~-~~~--~~~-~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~  133 (337)
                      ++.|.+|-..        +     . ..+  +.. .+...|..++|+++..++..   |+.+++||+..++.+..+..+.
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~  165 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE  165 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence            7999999765        2     1 011  111 24468999999887766544   9999999999999888887665


Q ss_pred             CCceEEEEeeCCCccEEEEcCC
Q 019672          134 NLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +  .+..++++|-++++++-+.
T Consensus       166 ~--yvqgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  166 H--YVQGVAWDPLNQYVASKSS  185 (434)
T ss_pred             c--ccceeecchhhhhhhhhcc
Confidence            5  3445556666777776653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.50  E-value=6.7e-13  Score=121.71  Aligned_cols=153  Identities=17%  Similarity=0.197  Sum_probs=114.2

Q ss_pred             eeEEEEcCCeEEEEE---CCeEEEEECCCCeee--eeecCCCCCceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCc
Q 019672           97 ILAVRLNKKRLVIVL---REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        97 v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ...+..+..+.+|-.   .|.|-||+++....+  ..+.+..|...+..+.++| |...||+++  +||.|++|.+..+.
T Consensus       584 snGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~g  661 (1012)
T KOG1445|consen  584 SNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANG  661 (1012)
T ss_pred             cCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc--cCceEEEEEeccCC
Confidence            344444555555543   679999999754322  1233444566777888776 456788887  69999999987543


Q ss_pred             c------------cccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672          171 S------------HCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       171 ~------------~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      .            .|...|.++.|+| -...||+++.|-+ |++||+++++....|. + |...|..++|||||+   .+
T Consensus       662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~-g-HtdqIf~~AWSpdGr---~~  735 (1012)
T KOG1445|consen  662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLV-G-HTDQIFGIAWSPDGR---RI  735 (1012)
T ss_pred             CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheec-c-CcCceeEEEECCCCc---ce
Confidence            2            1337899999999 3558999999987 7999999998877774 3 466799999999999   99


Q ss_pred             EEEeCCCcEEEEecCCCccc
Q 019672          238 VATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       238 as~s~dg~v~iw~l~~~~~~  257 (337)
                      |+-+.||+|+||+-.....+
T Consensus       736 AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  736 ATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             eeeecCceEEEeCCCCCCCc
Confidence            99999999999997765443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.50  E-value=6.1e-12  Score=107.07  Aligned_cols=229  Identities=10%  Similarity=0.015  Sum_probs=151.0

Q ss_pred             EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--------------CEEEEEEcCCceeEEEEc-------CCe-EEE
Q 019672           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--------------TALRELNFLTSILAVRLN-------KKR-LVI  109 (337)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--------------~~~~~~~~~~~v~~i~~~-------~~~-~~v  109 (337)
                      +.+++++..+...+       .|+.+.+|++-..              .+...+.....|..-.|-       |.. ++.
T Consensus        55 ckWSPDGSciL~~s-------edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   55 CKWSPDGSCILSLS-------EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             ceeCCCCceEEeec-------ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            45566666654443       5999999996421              111223333455554442       222 222


Q ss_pred             EE--CCeEEEEECCCCeeeeeecCCCC---CceEEEEeeCCCccEEEEcCCCCccEEEEEEc-cCCcc------------
Q 019672          110 VL--REKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNV-MELHS------------  171 (337)
Q Consensus       110 ~~--d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~-~~~~~------------  171 (337)
                      ++  +.-|++||.-+++....+....+   ..+..++.++||+.+|+++-   ...|++||+ +.++.            
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy---krcirvFdt~RpGr~c~vy~t~~~~k~  204 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY---KRCIRVFDTSRPGRDCPVYTTVTKGKF  204 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc---cceEEEeeccCCCCCCcchhhhhcccc
Confidence            33  77899999999988777654433   23446778889999987654   689999999 33331            


Q ss_pred             cccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEE
Q 019672          172 HCEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVF  249 (337)
Q Consensus       172 ~~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw  249 (337)
                      .+.+-|.|++|+|- .+.+|.|+.-.+ +-|+.-..+..++.+.  .+..-|+.|.|.+||+   .|.+|+. |-.|-.|
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llg--gh~gGvThL~~~edGn---~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLG--GHGGGVTHLQWCEDGN---KLFSGARKDDKILCW  278 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeec--ccCCCeeeEEeccCcC---eecccccCCCeEEEE
Confidence            11277999999994 458888887655 5788877778877663  3456799999999999   8888876 4579999


Q ss_pred             ecCCCcccCCCCcccccccccccccceeecccccce---eeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          250 SPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH---VLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      |++.-..+.                    |...++.   .-+..+...++++.|++|+.||.|++|+++.
T Consensus       279 DiR~~~~pv--------------------~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  279 DIRYSRDPV--------------------YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eehhccchh--------------------hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            998655432                    1111100   0011122245668899999999999999864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.49  E-value=5.9e-12  Score=107.39  Aligned_cols=183  Identities=13%  Similarity=0.064  Sum_probs=121.8

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      -++|+|+|+++|+..+..+-|-|.++.++..-.. ...+..+++.-++..++.+.      +.|..|.+|++.+.+--+.
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~------yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVA------YKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeee------eccceEEEEEeecceeEEE
Confidence            5689999999999998888888988876432111 12344556655555554443      3688999999999888888


Q ss_pred             EEcCC-ceeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC---------
Q 019672           91 LNFLT-SILAVRLNKKRLVI--VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---------  156 (337)
Q Consensus        91 ~~~~~-~v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---------  156 (337)
                      +.... .+.++.|+|++.-+  .+  +-+|.+|.+.+.+.... .-+.  .++-.+++++++++.|...+.         
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            87554 78899999987322  22  67999999987654322 2111  233455667777777665421         


Q ss_pred             -------------------------CccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          157 -------------------------TKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       157 -------------------------~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                                               .+..+.+||.--.-.    ...-.+..++|+|.+++||.|+.|+. +||.+-
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh  239 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNH  239 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhce
Confidence                                     234455665321111    01156889999999999999999986 577543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=2.5e-11  Score=99.60  Aligned_cols=224  Identities=13%  Similarity=0.177  Sum_probs=148.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCC------cEEEEE----e-----eCCEEEEEEccCCCEEEEEeCC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG------RLCYER----A-----VGAFSIVEMLYSSSLLAIVGAG   67 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~------~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~g   67 (337)
                      .++|++||++++|..  .+|.+|++.-++=|.....      +.+.+.    +     ..++....+.+..+-+++.+| 
T Consensus        58 eqahdgpiy~~~f~d--~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFHD--DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-  134 (325)
T ss_pred             ccccCCCeeeeeeeh--hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-
Confidence            478999999999993  4577777755665532211      111111    1     123333445566677777775 


Q ss_pred             CCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEE-cCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCC--------
Q 019672           68 EQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNL--------  135 (337)
Q Consensus        68 ~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~--------  135 (337)
                            |+.+..||+++|+..+++..++ .|.++.. +.+..++.+  ||++++||.++.+.+..+....++        
T Consensus       135 ------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  135 ------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             ------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence                  9999999999999999998776 5777665 444444433  999999999999988888654433        


Q ss_pred             ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      .-+.|++.+.  .++++++   ...+.+|.+++....+.    +++..+.|..|  .++.+++- +.+.-|.+. |..-.
T Consensus       209 ~wigala~~e--dWlvCGg---Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g-~~v~~~~l~-Gvl~a  279 (325)
T KOG0649|consen  209 KWIGALAVNE--DWLVCGG---GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEG-NHVQSYTLN-GVLQA  279 (325)
T ss_pred             ceeEEEeccC--ceEEecC---CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccc-cceeeeeec-cEEEE
Confidence            2345666554  4888877   46799999998877654    77888888765  56666654 446778763 44433


Q ss_pred             eeccCCcceeEEEEEee--cCCCcccEEEEEeCCCcEEEEe
Q 019672          212 SFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ....+++  ..++..++  | -+   +|-.++..+.++|+.
T Consensus       280 ~ip~~s~--~c~s~s~~~~p-~k---~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  280 NIPVEST--ACYSASWQTSP-IK---FISIAGFSNKLHILK  314 (325)
T ss_pred             eccCCcc--ceeeecccCCc-eE---EEEecccceeeeeee
Confidence            3332222  24455544  4 23   788888888899874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.48  E-value=3.9e-12  Score=106.66  Aligned_cols=216  Identities=14%  Similarity=0.108  Sum_probs=150.3

Q ss_pred             CCceEEEEECCCC--CEEEE-E-EcCCceeEEEEcCC---eEEEEE----C----CeEEEEECCCCe---------eeee
Q 019672           73 SPRRLCLFNTTTG--TALRE-L-NFLTSILAVRLNKK---RLVIVL----R----EKTYIYDANTLA---------ILDT  128 (337)
Q Consensus        73 ~d~~v~iwd~~~~--~~~~~-~-~~~~~v~~i~~~~~---~~~v~~----d----~~i~i~d~~~~~---------~~~~  128 (337)
                      .|+.|.+.++..+  ....+ + .+.++|..++-+|.   -+..+.    +    ..+.||.+....         .+..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            4788888776543  32222 2 23457888877653   222232    1    257899986431         1222


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----------ccCceEEEEeCC--CCCEEEEEeCC
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----------CEAPLAAIVLSS--NGMYIATASEQ  195 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----------~~~~i~~~~~s~--dg~~lat~s~d  195 (337)
                      +.+. ....+.++-+.|++..+|+-.   |..|.+|++......           ++...++-+|||  ||+.+++.+ |
T Consensus       118 Ldte-avg~i~cvew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d  192 (370)
T KOG1007|consen  118 LDTE-AVGKINCVEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D  192 (370)
T ss_pred             CCHH-HhCceeeEEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence            2221 123466777778777887654   789999999876542           125577888998  899998876 4


Q ss_pred             CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccc
Q 019672          196 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV  275 (337)
Q Consensus       196 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (337)
                      ++ ++.||+++..+...++.. |...|..|.|+|+-++  +|+++++||.|||||.+..+.+.          ..++...
T Consensus       193 ~t-l~~~D~RT~~~~~sI~dA-Hgq~vrdlDfNpnkq~--~lvt~gDdgyvriWD~R~tk~pv----------~el~~Hs  258 (370)
T KOG1007|consen  193 ST-LQFWDLRTMKKNNSIEDA-HGQRVRDLDFNPNKQH--ILVTCGDDGYVRIWDTRKTKFPV----------QELPGHS  258 (370)
T ss_pred             Cc-EEEEEccchhhhcchhhh-hcceeeeccCCCCceE--EEEEcCCCccEEEEeccCCCccc----------cccCCCc
Confidence            56 699999999988888654 4567999999999985  89999999999999998776544          3567777


Q ss_pred             eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          276 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       276 ~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      ..+|.+.+.+.         -...|++|++|-.|..+....
T Consensus       259 HWvW~VRfn~~---------hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  259 HWVWAVRFNPE---------HDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             eEEEEEEecCc---------cceEEEecCCCceeEEEeccc
Confidence            78898866321         135677999999998887643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=3.8e-12  Score=119.22  Aligned_cols=208  Identities=13%  Similarity=0.095  Sum_probs=133.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC----ceEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce--
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKD----GFKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR--   76 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~----g~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~--   76 (337)
                      .+...+.+.+|+|||+.|+..+.+    .+.+||+.+++.  +.... +......+.++++.+++++.      .++.  
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~------~~g~~~  273 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASS------KDGVLN  273 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEe------cCCcEE
Confidence            456679999999999998876532    268999988753  22222 22334567777888877654      2454  


Q ss_pred             EEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           77 LCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      |.+||+.+++..........+....|++++  ++++.  ++...||++... .....+ .+.   + ....++|++..++
T Consensus       274 Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~---~-~~~~~SpDG~~ia  348 (429)
T PRK01742        274 IYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR---G-YSAQISADGKTLV  348 (429)
T ss_pred             EEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC---C-CCccCCCCCCEEE
Confidence            455577776654333334456778888875  44444  466777765322 112222 221   1 2345678888988


Q ss_pred             EcCCCCccEEEEEEccCCcccc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEc--CCCceeEeeccCCcceeEEEEE
Q 019672          152 VPASTTKGSVLVYNVMELHSHC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLV--SEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~--~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      +.+.  ++ +.+||+.++....   ......++|+|||++|+.++.+|. +++|++  .+|+.+.++..  +.+.+...+
T Consensus       349 ~~~~--~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~~~G~~~~~l~~--~~g~~~~p~  422 (429)
T PRK01742        349 MING--DN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGL-GKVLQLVSADGRFKARLPG--SDGQVKFPA  422 (429)
T ss_pred             EEcC--CC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCC-ceEEEEEECCCCceEEccC--CCCCCCCcc
Confidence            8763  44 6669998775321   123466789999999999999987 477775  36777777742  345577889


Q ss_pred             eecC
Q 019672          227 FGQS  230 (337)
Q Consensus       227 fs~d  230 (337)
                      |||-
T Consensus       423 wsp~  426 (429)
T PRK01742        423 WSPY  426 (429)
T ss_pred             cCCC
Confidence            9974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.8e-11  Score=110.14  Aligned_cols=269  Identities=14%  Similarity=0.137  Sum_probs=169.5

Q ss_pred             CCCeEEEEEcCCCCE-EEEEcCC-ceEEEeCCCCcEEEEEeeC-CEEEEEEc-cCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            7 SYPVFFVSFNQDNSG-FALSTKD-GFKIFDSSTGRLCYERAVG-AFSIVEML-YSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~-la~g~~~-g~~vw~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +..-+.+..+|||+| +|+|.-+ .+++||+.+..+.++.+.. .+.-+.++ -+-+..++.-       .|++|-+-.-
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-------~DR~IefHak  123 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-------NDRTIEFHAK  123 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-------cCceeeehhh
Confidence            344577899999999 5666655 4799999888777765432 22212222 1222223332       3666655321


Q ss_pred             CCCCEEEEEEcCCceeEEEEc---CCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           83 TTGTALRELNFLTSILAVRLN---KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~---~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                       -|. -..+..+..-.++.++   -+.+++++...|+-+++..|+-+..+.+...  ++.++..++...+||+++  .+|
T Consensus       124 -~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt--~~g  197 (703)
T KOG2321|consen  124 -YGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGT--EDG  197 (703)
T ss_pred             -cCe-eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc--cceeeeecCccceEEecc--cCc
Confidence             111 1222333333445543   3455555677999999999988888876544  455556667777888877  699


Q ss_pred             EEEEEEccCCccccc----------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          160 SVLVYNVMELHSHCE----------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~----------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      .|..||.+.......                ..|+++.|+.||-.++.|..+|.+ .|||+++.+.+..-. +....+|.
T Consensus       198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-~iyDLRa~~pl~~kd-h~~e~pi~  275 (703)
T KOG2321|consen  198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-LIYDLRASKPLLVKD-HGYELPIK  275 (703)
T ss_pred             eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-EEEEcccCCceeecc-cCCcccee
Confidence            999999886543211                449999999999999999999985 799999988765432 33355799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEE
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  303 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~  303 (337)
                      .+.|-+.++ .+.+++ .+...++|||-.+++....          .-|..  .+=..       +.   -++...++++
T Consensus       276 ~l~~~~~~~-q~~v~S-~Dk~~~kiWd~~~Gk~~as----------iEpt~--~lND~-------C~---~p~sGm~f~A  331 (703)
T KOG2321|consen  276 KLDWQDTDQ-QNKVVS-MDKRILKIWDECTGKPMAS----------IEPTS--DLNDF-------CF---VPGSGMFFTA  331 (703)
T ss_pred             eecccccCC-CceEEe-cchHHhhhcccccCCceee----------ccccC--CcCce-------ee---ecCCceEEEe
Confidence            999976633 124443 4456799999877765332          11110  01001       01   1233678888


Q ss_pred             EeCCcEEEEEE
Q 019672          304 TYNGYFVEYIF  314 (337)
Q Consensus       304 ~~dg~~~~~~~  314 (337)
                      -.++.+..|-+
T Consensus       332 ne~~~m~~yyi  342 (703)
T KOG2321|consen  332 NESSKMHTYYI  342 (703)
T ss_pred             cCCCcceeEEc
Confidence            88888888755

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.45  E-value=3.5e-13  Score=119.42  Aligned_cols=173  Identities=11%  Similarity=0.124  Sum_probs=142.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEE--cCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRL--NKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~--~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      ..|.|..+|+.++++.+++...+.|.++.|  +++.++|+..+.++|||- .|..++.+..+..   +..+.+-|-..+|
T Consensus       149 rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~~---v~rLeFLPyHfLL  224 (545)
T KOG1272|consen  149 RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHIR---VARLEFLPYHFLL  224 (545)
T ss_pred             CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcCc---hhhhcccchhhee
Confidence            478999999999999999999999999988  456677777899999994 5667788765433   4444555555567


Q ss_pred             EEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      ++++  ..|.++--|+.+++.+..     +++..++-+|-...+-+|...|+ +-+|.-...+.+..+-  -|.++|.+|
T Consensus       225 ~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSlWSP~skePLvKiL--cH~g~V~si  299 (545)
T KOG1272|consen  225 VAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSLWSPNSKEPLVKIL--CHRGPVSSI  299 (545)
T ss_pred             eecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEecCCCCcchHHHHH--hcCCCcceE
Confidence            7666  589999999999987643     88999999998889999999998 5899998888776553  246789999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      ++.++|+   |+||++.|..++|||++....+
T Consensus       300 Av~~~G~---YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  300 AVDRGGR---YMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             EECCCCc---EEeecccccceeEeeecccccc
Confidence            9999999   9999999999999999876643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.44  E-value=1.1e-11  Score=111.82  Aligned_cols=151  Identities=15%  Similarity=0.209  Sum_probs=102.8

Q ss_pred             CCceEEEEECCCCCEEEEEE-----cCCceeEEEEcC--Ce-EEEEE-CCeEEEEECCC--------------Ceeeeee
Q 019672           73 SPRRLCLFNTTTGTALRELN-----FLTSILAVRLNK--KR-LVIVL-REKTYIYDANT--------------LAILDTI  129 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~-----~~~~v~~i~~~~--~~-~~v~~-d~~i~i~d~~~--------------~~~~~~~  129 (337)
                      .-+.|.+.|....+..+.+.     -.+.|++|+|-+  +. ++++. ++.+++||...              +......
T Consensus       193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            35678888766532211121     135789998843  33 44443 88999997631              1110000


Q ss_pred             ----cCCCCC--------ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEE
Q 019672          130 ----DTVPNL--------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATA  192 (337)
Q Consensus       130 ----~~~~~~--------~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~  192 (337)
                          ....+|        ..+..++++||+.+||+.+  .||.++|||..+.+.+..     +...||+|||||++||+|
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence                000011        2345667788999999999  699999999988776532     889999999999999999


Q ss_pred             eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      ++|. ++.||.+..++.+.+=  ..|+.-|..|+|.
T Consensus       351 GEDD-LVtVwSf~erRVVARG--qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  351 GEDD-LVTVWSFEERRVVARG--QGHKSWVSVVAFD  383 (636)
T ss_pred             CCcc-eEEEEEeccceEEEec--cccccceeeEeec
Confidence            9997 5799999998877642  2346678888887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.43  E-value=9.2e-12  Score=114.97  Aligned_cols=230  Identities=15%  Similarity=0.159  Sum_probs=152.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCC--CEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|+..|+|++|+.||+.||+|+.|. +.+|+..- +-+.... |+-.+-+|.|++  ..++.++-        +..-+
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~LasCsL--------sdFgl  118 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQLASCSL--------SDFGL  118 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec-cCCeeeEeecCchHHHhhhcch--------hhccc
Confidence            457899999999999999999998876 59998542 2222222 223344555555  44555443        46778


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCc-----cEE
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNA-----CFL  150 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~l  150 (337)
                      |...... +........+.+.+|+.++.+.+.   +|+|.+-+-. ++....++.+ .....+.+++++|..     ..+
T Consensus       119 WS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~  196 (1081)
T KOG1538|consen  119 WSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDIL  196 (1081)
T ss_pred             cChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceE
Confidence            8876533 333444567888899877655543   8999998653 3333344332 222345555554432     244


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      ++..  ...++..|.+........    -...|+.+-|+|.++..|+.|+. +++|- +.|-.+.++..  ...-|++++
T Consensus       197 aV~D--W~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~--~D~WIWtV~  270 (1081)
T KOG1538|consen  197 AVAD--WGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE--QDSWIWTVQ  270 (1081)
T ss_pred             EEEe--ccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc--cceeEEEEE
Confidence            5544  456666666543222211    45678999999999999999996 57774 56777777632  345699999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..|+++   +++.|..||||-.|++-.
T Consensus       271 ~~PNsQ---~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  271 AKPNSQ---YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             EccCCc---eEEEEEccCeeehhhhHH
Confidence            999999   999999999999999753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.43  E-value=2.9e-11  Score=105.42  Aligned_cols=220  Identities=12%  Similarity=0.123  Sum_probs=145.0

Q ss_pred             CCCCCCCeEEEEEcCCCCE-EEEEcCCc-eEEEeCCCCcE-------EEEE--eeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQDNSG-FALSTKDG-FKIFDSSTGRL-------CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~-la~g~~~g-~~vw~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      ..+|.++|..++|+|-... +|+|++|. ++||.+-.+-+       +..+  +...++++.+.+...-+.+.++     
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-----  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-----  151 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-----
Confidence            3579999999999997765 78888887 59998644322       2222  2234566666544433333343     


Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                       .|++|.+||+.+|+.+.++.|+..|.++.|+.++-.+++   |.+|+|||.++++.+.+-..|.+....-++= -.++.
T Consensus       152 -~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif-l~~g~  229 (472)
T KOG0303|consen  152 -SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF-LASGK  229 (472)
T ss_pred             -CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE-eccCc
Confidence             499999999999999999998889999999988766555   8999999999998887764444332222221 12333


Q ss_pred             EEEEcCC--CCccEEEEEEccCCccc---cc----CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCce-eEeeccCC
Q 019672          149 FLAVPAS--TTKGSVLVYNVMELHSH---CE----APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK-SYSFRRGT  217 (337)
Q Consensus       149 ~la~~~~--~~dg~v~i~d~~~~~~~---~~----~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~-~~~~~~~~  217 (337)
                       +++.|.  ..+.++.+||..+....   ++    +.|.-=-|+||.+.+..++ .|+. ||-|.+.+... ++-+..-.
T Consensus       230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~  307 (472)
T KOG0303|consen  230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFS  307 (472)
T ss_pred             -eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecccc
Confidence             555542  14788999998766532   11    5555556788877665444 6776 79999877653 22221111


Q ss_pred             cceeEEEEEeecCC
Q 019672          218 YPSTIFSLSFGQSM  231 (337)
Q Consensus       218 ~~~~i~~l~fs~dg  231 (337)
                      ...+...+.|-|..
T Consensus       308 S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  308 SKEPQRGMGFMPKR  321 (472)
T ss_pred             cCCccccccccccc
Confidence            22345667777754

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3e-11  Score=113.17  Aligned_cols=206  Identities=13%  Similarity=0.038  Sum_probs=131.8

Q ss_pred             ceEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-
Q 019672           29 GFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-  106 (337)
Q Consensus        29 g~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-  106 (337)
                      .+.+||.+...... ......+....+.++++.+++++.+    ..+..|.+||+.+++.............+.|+|++ 
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~----~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE----NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEec----CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence            36888987654322 2222345556778888888887752    12458999999988654333344445567888865 


Q ss_pred             -EEEEE--CCe--EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--c--cccCce
Q 019672          107 -LVIVL--REK--TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--S--HCEAPL  177 (337)
Q Consensus       107 -~~v~~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~--~--~~~~~i  177 (337)
                       ++++.  ++.  |++||+.+++. ..+..+.  .......++|++..+++.+. .+|..+||++....  .  ..... 
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~--~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~~~~~~l~~~~-  335 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGA--GNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASGGGASLVGGRG-  335 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCe-EeeccCC--CCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEecCCC-
Confidence             44443  554  55667766543 3333222  23445667788887776653 46778888764321  1  11111 


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+.+|+|||++|+.++.++ + .+||+.+++... +....   ...+++|+|||+   +|+.++.++.+++|.+-
T Consensus       336 ~~~~~SpDG~~ia~~~~~~-i-~~~Dl~~g~~~~-lt~~~---~~~~~~~sPdG~---~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        336 YSAQISADGKTLVMINGDN-V-VKQDLTSGSTEV-LSSTF---LDESPSISPNGI---MIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CCccCCCCCCEEEEEcCCC-E-EEEECCCCCeEE-ecCCC---CCCCceECCCCC---EEEEEEcCCCceEEEEE
Confidence            4678999999999988876 3 469999887543 22221   234678999999   99999999999888863

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.42  E-value=8.6e-12  Score=103.72  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=82.4

Q ss_pred             EEEEeeCCCccEEEEc-CCCCccEEEEEEccCCccc---ccCceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCcee
Q 019672          138 LCAFSPSLNACFLAVP-ASTTKGSVLVYNVMELHSH---CEAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKS  210 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~-~~~~dg~v~i~d~~~~~~~---~~~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~  210 (337)
                      +.+++++|++..+|+. |. .++.|.+||++ .+..   ...+++.+.|||+|++||+|+.+   |. +.+||+++.+.+
T Consensus        62 I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i  138 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKI  138 (194)
T ss_pred             eEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEe
Confidence            7777888887776544 33 46799999997 3332   23789999999999999998743   54 699999999988


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeC------CCcEEEEecCC
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGF  253 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~------dg~v~iw~l~~  253 (337)
                      .++..    ..+..++|||||+   +|++++.      |+.++||+...
T Consensus       139 ~~~~~----~~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  139 STFEH----SDATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             ecccc----CcEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecC
Confidence            77642    2367899999999   8888875      68899999853

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=6e-12  Score=110.47  Aligned_cols=185  Identities=20%  Similarity=0.278  Sum_probs=129.4

Q ss_pred             EEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEE--EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           11 FFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      .+++|++||+.+++|..||. |||+......+..  .+..++..+.+.+++..++.+++       | ..+||+..+|..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-------d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-------D-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-------C-ceEEEEeccCch
Confidence            68999999999999998885 9999666554433  23466777788888888888876       5 999999999976


Q ss_pred             EEEEE-cCC--ceeEEEEcCCe----EEEE-E---CCeEEEEECCCC---eeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           88 LRELN-FLT--SILAVRLNKKR----LVIV-L---REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        88 ~~~~~-~~~--~v~~i~~~~~~----~~v~-~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      +.+.+ ...  ....+.|..+.    +.++ .   .+.|+.||+..-   ..++..+.-.....+.++..++++.++|.+
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            66554 222  33444554332    2332 2   346666665321   111111111122357888889999999998


Q ss_pred             CCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          154 ASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +  .||.|.|++..+.+..      |...|+.+.|+||.+++++.|.|.+ ++|..+.-
T Consensus       300 T--~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  300 T--MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             c--cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            8  4999999999887754      3488999999999999999888876 57776643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.40  E-value=5.4e-11  Score=103.65  Aligned_cols=234  Identities=15%  Similarity=0.136  Sum_probs=153.2

Q ss_pred             CCeEEEEEcCCCCE-EEEEc--CCceEEEeCCCCcEEEEE------eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            8 YPVFFVSFNQDNSG-FALST--KDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         8 ~~v~~~~fs~dg~~-la~g~--~~g~~vw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ..|+++.|.-|++. +..+.  ++.+..+..+........      ....-.+..+......++++..       +|.+.
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~-------sG~l~  128 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS-------SGNLQ  128 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec-------CCcEE
Confidence            45778888877754 33333  334566655544332221      1122233444444455555433       78999


Q ss_pred             EEECCCCC----EEEEEEcCCceeEEEEcCC-eEEEEE---C--CeEEEEECCCCeeeeeecCCCC-------CceEEEE
Q 019672           79 LFNTTTGT----ALRELNFLTSILAVRLNKK-RLVIVL---R--EKTYIYDANTLAILDTIDTVPN-------LKGLCAF  141 (337)
Q Consensus        79 iwd~~~~~----~~~~~~~~~~v~~i~~~~~-~~~v~~---d--~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~  141 (337)
                      +|..+.+.    ++..+.....+..+.-++. .-+++.   .  +.+.|||+...+++.+-...++       |.-..++
T Consensus       129 ~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi  208 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDI  208 (412)
T ss_pred             EEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccc
Confidence            99988443    3344444455555554332 223332   3  5799999988766655433222       2223344


Q ss_pred             eeCCC--ccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          142 SPSLN--ACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       142 ~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      .+-+.  ...+|++..  -++|++||.+.++..      .+.+|+++...|+|++|.+|..-|. +..||++.++.+...
T Consensus       209 ~Fl~g~~~~~fat~T~--~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITR--YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLLGCG  285 (412)
T ss_pred             eecCCCCCceEEEEec--ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceeeccc
Confidence            44333  567777763  799999999987653      2389999999999999999999998 589999999987764


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ..+. .+.|.+|--+|..+   +||+++-|..|+|+|+++.+
T Consensus       286 ~kg~-tGsirsih~hp~~~---~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  286 LKGI-TGSIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             cCCc-cCCcceEEEcCCCc---eEEeeccceeEEEeecccch
Confidence            3332 45689999999999   99999999999999998743

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.40  E-value=9.2e-11  Score=115.03  Aligned_cols=241  Identities=11%  Similarity=0.105  Sum_probs=160.0

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEcCCce-EEEeCCCC---------cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            5 SSSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg-~~la~g~~~g~-~vw~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      .|...|..++.+++. ++|++|++||+ ++||+..-         ++.+......+..+.+.+.++.+++.+       .
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~ 1118 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------K 1118 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------C
Confidence            355566677777655 99999999995 99997532         123333456677888888999888874       4


Q ss_pred             CceEEEEECCCC--CE-E----EE--EEcCCceeEEE-E---cCC-eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672           74 PRRLCLFNTTTG--TA-L----RE--LNFLTSILAVR-L---NKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        74 d~~v~iwd~~~~--~~-~----~~--~~~~~~v~~i~-~---~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                      ||.|++.++...  +. .    ..  ....+.+..+. +   ... .++.++ -+.|..||++.......++.......+
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence            999999988652  11 1    11  12223343332 1   122 333444 568999999987777677666666677


Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCC---CCCEEEEEeC-CCcEEEEEEcCCCc
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSS---NGMYIATASE-QGTIIRVFLVSEAT  208 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~---dg~~lat~s~-dg~~i~vwd~~~~~  208 (337)
                      .+++.+|.+++++.+.  ..|.+.+||++-.....      ..+|+.+..+|   .....++++. -.+-+-+|++.+|.
T Consensus      1199 TSi~idp~~~WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             eEEEecCCceEEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            8888899999999887  48999999998665432      27777777766   3356666655 33346899999997


Q ss_pred             eeEeeccC-----------------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          209 KSYSFRRG-----------------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       209 ~~~~~~~~-----------------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      +-..+...                 .+.-.....++...+.   ++.+|+.|..|+.||...+...
T Consensus      1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~---~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG---FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc---eeeecCCccceeeccCCCcccc
Confidence            66555322                 0011122234444444   8999999999999998776543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.39  E-value=6.3e-11  Score=116.14  Aligned_cols=231  Identities=9%  Similarity=0.089  Sum_probs=135.3

Q ss_pred             CCceEEEEECCCC-------CEEEEEE-cCCceeEEEE--cCCeEEEEE-CCeEEEEECCCC--e-----eeeeecCCCC
Q 019672           73 SPRRLCLFNTTTG-------TALRELN-FLTSILAVRL--NKKRLVIVL-REKTYIYDANTL--A-----ILDTIDTVPN  134 (337)
Q Consensus        73 ~d~~v~iwd~~~~-------~~~~~~~-~~~~v~~i~~--~~~~~~v~~-d~~i~i~d~~~~--~-----~~~~~~~~~~  134 (337)
                      .||+|++||.+.-       +...++. ..+.+..+..  +.+.+++++ ||.|++.++.--  +     ..+.... ..
T Consensus      1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-~~ 1147 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-KK 1147 (1431)
T ss_pred             CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccc-cC
Confidence            6999999997531       2233444 3446655554  667788877 999999988641  1     1111111 11


Q ss_pred             CceEE---EEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          135 LKGLC---AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       135 ~~~~~---~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                      ...++   ++........++++.  .-+.|..||+++.....       .+.|++++.+|-+.+++.|+..|.+ -+||+
T Consensus      1148 ~g~vv~m~a~~~~~~S~~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l-~lWDL 1224 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL-VLWDL 1224 (1431)
T ss_pred             CCceEEeecccccccceeEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE-EEEEe
Confidence            11222   222222223555554  36789999998765432       2889999999999999999999985 69999


Q ss_pred             CCCceeEeeccCCcceeEEEEEeecC---CCcccEEEEEe--CCCcEEEEecCCCcccCCCCcc--ccccccccccccee
Q 019672          205 SEATKSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRT--SSILGSILPESVNE  277 (337)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~l~fs~d---g~~~~~las~s--~dg~v~iw~l~~~~~~~~~~~~--~~~~~~~~~~~~~~  277 (337)
                      +-+..+..+..++ .++|..|..+|-   ..   ..++++  ..+-|.+|++.++......-.+  ...+...+|..  .
T Consensus      1225 RF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S---~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~ 1298 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPA-RAPIRHVWLCPTYPQES---VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--D 1298 (1431)
T ss_pred             ecCceeecccCcc-cCCcceEEeeccCCCCc---eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--c
Confidence            9998888775443 466666665543   33   455444  4677999999887432210000  00011112211  0


Q ss_pred             ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      .-.+  +.+.......-.++.-+++|+.|+.++.|+..
T Consensus      1299 ~~kp--~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1299 ARKP--DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             CCCC--CcccceeeecccCCceeeecCCccceeeccCC
Confidence            0001  00101111112235678999999999999773

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.38  E-value=1.1e-11  Score=102.88  Aligned_cols=233  Identities=11%  Similarity=0.089  Sum_probs=145.4

Q ss_pred             EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cC-CceeEEEEcCCeEEEEE--CCeEEEEECCCCee
Q 019672           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FL-TSILAVRLNKKRLVIVL--REKTYIYDANTLAI  125 (337)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~-~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~  125 (337)
                      .+....|..+...+.+.      ..|-|++|++.+.+....+. +. ..|+.+..-++..++..  |..+.+|++.....
T Consensus        16 ~v~s~~fqa~~rL~sg~------~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~   89 (323)
T KOG0322|consen   16 SVTSVLFQANERLMSGL------SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF   89 (323)
T ss_pred             hheehhhccchhhhccc------ccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence            34455555555544443      57899999999988777766 33 36777777665433333  66888888754211


Q ss_pred             --eeee------------cC-----------C------------CC--------------CceEEEEee--CCCccEEEE
Q 019672          126 --LDTI------------DT-----------V------------PN--------------LKGLCAFSP--SLNACFLAV  152 (337)
Q Consensus       126 --~~~~------------~~-----------~------------~~--------------~~~~~~~~~--~~~~~~la~  152 (337)
                        ++.+            ..           +            +.              ...++++..  ......++.
T Consensus        90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll  169 (323)
T KOG0322|consen   90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL  169 (323)
T ss_pred             EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence              0110            00           0            00              001223331  112345666


Q ss_pred             cCCCCccEEEEEEccCCccc---------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC--CceeEeecc
Q 019672          153 PASTTKGSVLVYNVMELHSH---------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATKSYSFRR  215 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~---------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~--~~~~~~~~~  215 (337)
                      +|+ ++|.|.+||+.++...               |..+|.++.|.+.-..=++|+.+... -.|+++.  |.+......
T Consensus       170 aGy-Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl-~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  170 AGY-ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL-VMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             Eec-cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc-eeeeeccccCcccccceE
Confidence            777 7999999999886321               33889999998865555677776664 4888753  332111111


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  295 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  295 (337)
                      ...+.-|..+..-||++   .||+++.|+.|+||.-++.....           ++.          .|+.-++.+++.+
T Consensus       248 ~lknpGv~gvrIRpD~K---IlATAGWD~RiRVyswrtl~pLA-----------VLk----------yHsagvn~vAfsp  303 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGK---ILATAGWDHRIRVYSWRTLNPLA-----------VLK----------YHSAGVNAVAFSP  303 (323)
T ss_pred             EecCCCccceEEccCCc---EEeecccCCcEEEEEeccCCchh-----------hhh----------hhhcceeEEEeCC
Confidence            11122377788899999   99999999999999987765422           111          1222345667788


Q ss_pred             ccCEEEEEEeCCcEEEEEE
Q 019672          296 KRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       296 ~~~~l~~~~~dg~~~~~~~  314 (337)
                      +.+-+++++.|+.|-.|.+
T Consensus       304 d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  304 DCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCchhhhccCCceEEeeec
Confidence            8889999999999999986

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.5e-11  Score=109.84  Aligned_cols=280  Identities=13%  Similarity=0.082  Sum_probs=180.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +.+|.+-|..+.|+..|..|++|+++. +.+||...++.......   ..+....+.+.+...-+++.+     .|+.|+
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-----~dgqvr  212 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-----RDGQVR  212 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-----ccCcee
Confidence            567889999999999999999999987 59999988877665432   233334455544443344432     689988


Q ss_pred             EEECC-CCCEE---EEEEcCCceeEEEE---cCCeEEEEE-CCeEEEEECCCCeeeeeecC--CCC--CceEEEEeeCCC
Q 019672           79 LFNTT-TGTAL---RELNFLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAILDTIDT--VPN--LKGLCAFSPSLN  146 (337)
Q Consensus        79 iwd~~-~~~~~---~~~~~~~~v~~i~~---~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~--~~~--~~~~~~~~~~~~  146 (337)
                      +=.+- ++...   ....+.++|..+++   ++..+..++ |+.+.-+|++.......+..  ...  ..++.+++.+|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            86643 33332   23456667777776   455566666 78888899987654333321  112  246778888887


Q ss_pred             cc-EEEEcCCCCccEEEEEEccCCccc------cc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC--C
Q 019672          147 AC-FLAVPASTTKGSVLVYNVMELHSH------CE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVS--E  206 (337)
Q Consensus       147 ~~-~la~~~~~~dg~v~i~d~~~~~~~------~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~--~  206 (337)
                      +. .+|++|  .|..+++||.+.....      ++           -.|++++|+.+|.-|.++-.|-- |++|.-.  .
T Consensus       293 nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~  369 (559)
T KOG1334|consen  293 NTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGD  369 (559)
T ss_pred             CccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecccccc
Confidence            76 677777  5899999998754322      11           56999999977665555555543 6788532  2


Q ss_pred             C----------ceeEeeccCCcc-eeEEEEEee-cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc
Q 019672          207 A----------TKSYSFRRGTYP-STIFSLSFG-QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES  274 (337)
Q Consensus       207 ~----------~~~~~~~~~~~~-~~i~~l~fs-~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~  274 (337)
                      |          +.++....||.. ..|..+.|- |...   |+++||+=|.|.||+-++.+-.+-          ...  
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---yVvSGSDCGhIFiW~K~t~eii~~----------Meg--  434 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---YVVSGSDCGHIFIWDKKTGEIIRF----------MEG--  434 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccCccc---eEEecCccceEEEEecchhHHHHH----------hhc--
Confidence            3          223332234433 348888764 7777   999999999999999655432111          000  


Q ss_pred             ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          275 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                               .+-.++.+-.+|-..-|++.+-|-.|+||.=
T Consensus       435 ---------Dr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  435 ---------DRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ---------ccceEeccCCCCCCchhhccCCccceeeecC
Confidence                     1113444444555567888888999999954

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.36  E-value=4.7e-11  Score=107.85  Aligned_cols=251  Identities=12%  Similarity=0.098  Sum_probs=154.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEE-eCCCCcE-EEEEeeCCEE---EEE-----EccCCCEEEEEeCCCCCCCCCc
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIF-DSSTGRL-CYERAVGAFS---IVE-----MLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw-~~~~~~~-~~~~~~~~~~---~~~-----~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      +...|-|+.|......+.++.++.+.+| |+.+... +......-+.   +..     ---.++.+++++       .||
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s-------~DG   85 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS-------NDG   85 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEc-------CCc
Confidence            3455778899988888888887777555 4433221 1111000000   000     000112333333       488


Q ss_pred             eEEEEECCCCCEEEEEE-cCCceeEEEEcCCeE--EEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~--~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ++.|.+- .++....+. |...+.+-.|++++.  +.++ ||.|++|.-..+  ++... ..+...+.|..+.|+..-+.
T Consensus        86 kf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl-~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   86 RFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTV-VQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             eEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHH-hhcCceeEEEEECCCCCceE
Confidence            8888763 344333443 445788888988764  4444 999999985433  22221 12344577777777766666


Q ss_pred             EcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          152 VPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      ++.   .+.+.|=-+.....     .|.+-|.++.|+|....+++|++|-. .+|||.. |+.+++  ...+..+|++++
T Consensus       162 ~c~---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~--S~~~ey~ITSva  234 (737)
T KOG1524|consen  162 FCQ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFT--SAAEEYAITSVA  234 (737)
T ss_pred             Eec---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-Cccccc--CChhccceeeee
Confidence            554   35677766654432     35588999999999999999999988 5999976 555543  344567899999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  306 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d  306 (337)
                      |.|| +   .++.+|.. +++   ++++.               ..+.+.-.|+++              +.++.+|++.
T Consensus       235 ~npd-~---~~~v~S~n-t~R---~~~p~---------------~GSifnlsWS~D--------------GTQ~a~gt~~  277 (737)
T KOG1524|consen  235 FNPE-K---DYLLWSYN-TAR---FSSPR---------------VGSIFNLSWSAD--------------GTQATCGTST  277 (737)
T ss_pred             eccc-c---ceeeeeee-eee---ecCCC---------------ccceEEEEEcCC--------------CceeeccccC
Confidence            9999 6   67777654 555   22111               112334456554              4889999999


Q ss_pred             CcEEE
Q 019672          307 GYFVE  311 (337)
Q Consensus       307 g~~~~  311 (337)
                      |.+..
T Consensus       278 G~v~~  282 (737)
T KOG1524|consen  278 GQLIV  282 (737)
T ss_pred             ceEEE
Confidence            98765

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.35  E-value=4.7e-09  Score=94.17  Aligned_cols=230  Identities=10%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             EcCCCCEEEEEcC-----------CceEEEeCCCCcEEEEEeeCCE---------EEEEEccCCCEEEEEeCCCCCCCCC
Q 019672           15 FNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVGAF---------SIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus        15 fs~dg~~la~g~~-----------~g~~vw~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ++|||+.|.++..           +.+.|||+.+++.+.+...++-         ....+..+...+.+.--     ..+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPS  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-----CCC
Confidence            8999998876655           4579999999998877653221         14455566665544332     138


Q ss_pred             ceEEEEECCCCCEEEEEEcCCceeEEEEcCC-eEEEEECCeEEEEECCC-Cee-eeeecC--C-CCCceEE-EEeeCCCc
Q 019672           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVLREKTYIYDANT-LAI-LDTIDT--V-PNLKGLC-AFSPSLNA  147 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~v~~d~~i~i~d~~~-~~~-~~~~~~--~-~~~~~~~-~~~~~~~~  147 (337)
                      +.|.+.|+.+++.+.++..+....-...+++ .++.+.|++.....+.+ ++. ......  . ..+...- .+.+ .++
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg  206 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSG  206 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCC
Confidence            9999999999999999987663333333333 34445577655544432 221 111111  0 0000000 1222 255


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccccc-----------------CceEEEEeCCCCCEEEEEeC---------CCcEEEE
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSHCE-----------------APLAAIVLSSNGMYIATASE---------QGTIIRV  201 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~~~-----------------~~i~~~~~s~dg~~lat~s~---------dg~~i~v  201 (337)
                      .++..+.   .|.|.+.|+........                 +.+.-++++|+|+++..+..         .++.|.+
T Consensus       207 ~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       207 RLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             cEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            5665544   49999999643321110                 23344999999998887542         1134689


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCcccC
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR  258 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~~  258 (337)
                      +|.++++.+.++..+.   .+..|+||||++  .+|.+.. .+++|.|+|+.+.+..+
T Consensus       284 iD~~t~kvi~~i~vG~---~~~~iavS~Dgk--p~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       284 VDAKTGKRLRKIELGH---EIDSINVSQDAK--PLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             EECCCCeEEEEEeCCC---ceeeEEECCCCC--eEEEEeCCCCCcEEEEECcCCeEEe
Confidence            9999999999886543   578999999998  2444444 67899999998776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=8.2e-10  Score=103.43  Aligned_cols=209  Identities=16%  Similarity=0.074  Sum_probs=132.5

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.++|.+..... .......+....+.+++..+++++..    ..+..|.+||+.+++......+...+.+..|+|++  
T Consensus       181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~----~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE----SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEec----CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence            577787765332 22222345566778888888887632    12568999999988755444445555667888875  


Q ss_pred             EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEE--EEccCCcccc----cCc
Q 019672          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV--YNVMELHSHC----EAP  176 (337)
Q Consensus       107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i--~d~~~~~~~~----~~~  176 (337)
                      ++++.  ++  .|++||+.+++....... .  .......++|++..|++.+. .+|..+|  +|+.++....    ...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~--~~~~~~~wSPDG~~I~f~s~-~~g~~~Iy~~d~~~g~~~~lt~~~~~  332 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDG-R--SNNTEPTWFPDSQNLAYTSD-QAGRPQVYKVNINGGAPQRITWEGSQ  332 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCC-C--CCcCceEECCCCCEEEEEeC-CCCCceEEEEECCCCCeEEeecCCCC
Confidence            44333  33  699999988765433222 1  23345567788888877653 2444444  4666543221    134


Q ss_pred             eEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc---EEEEec
Q 019672          177 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFSP  251 (337)
Q Consensus       177 i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~---v~iw~l  251 (337)
                      ....+|+|||++|+..+.++  ..|.+||+.+++. ..+....   ...+..|||||+   +|+.++.++.   +.++++
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~SpDG~---~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAPNGT---MVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC---CCCCceECCCCC---EEEEEEcCCCceEEEEEEC
Confidence            56789999999998876543  2357899988864 3343221   234578999999   8999888865   667776


Q ss_pred             CC
Q 019672          252 GF  253 (337)
Q Consensus       252 ~~  253 (337)
                      +.
T Consensus       406 ~G  407 (429)
T PRK03629        406 DG  407 (429)
T ss_pred             CC
Confidence            43

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.3e-09  Score=92.85  Aligned_cols=164  Identities=15%  Similarity=0.274  Sum_probs=114.9

Q ss_pred             ceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-CCCEEEEEEcCC---ceeEEEEc
Q 019672           29 GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTALRELNFLT---SILAVRLN  103 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-~~~~~~~~~~~~---~v~~i~~~  103 (337)
                      .+.|||=...+.+.+... .++..+.  .+.+.++++-        +++|.||.+. .-+.++.+....   ..+++..+
T Consensus        76 kviIWDD~k~~~i~el~f~~~I~~V~--l~r~riVvvl--------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~  145 (346)
T KOG2111|consen   76 KVIIWDDLKERCIIELSFNSEIKAVK--LRRDRIVVVL--------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT  145 (346)
T ss_pred             eEEEEecccCcEEEEEEeccceeeEE--EcCCeEEEEe--------cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence            378999555566655543 3444333  4566666664        5799999987 445566554332   34444444


Q ss_pred             CCeEEEEE----CCeEEEEECCCCee--eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE-EEEEEccCCccccc--
Q 019672          104 KKRLVIVL----REKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS-VLVYNVMELHSHCE--  174 (337)
Q Consensus       104 ~~~~~v~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~-v~i~d~~~~~~~~~--  174 (337)
                      .+..+++.    -|.|.|-|+...+.  ...+..|.  ..+.+++.+-+|.++|+++  +.|+ |+|||..++..+.+  
T Consensus       146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaS--tkGTLIRIFdt~~g~~l~E~R  221 (346)
T KOG2111|consen  146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATAS--TKGTLIRIFDTEDGTLLQELR  221 (346)
T ss_pred             CCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEec--cCcEEEEEEEcCCCcEeeeee
Confidence            44444443    57899999976544  24454444  4577778888899999998  5677 79999999987654  


Q ss_pred             -----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          175 -----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       175 -----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                           +.|.|++||||+.+||.+|+.|+ +.||.++..
T Consensus       222 RG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~  258 (346)
T KOG2111|consen  222 RGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDT  258 (346)
T ss_pred             cCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecC
Confidence                 78999999999999999999998 599988753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.32  E-value=1.9e-09  Score=98.41  Aligned_cols=179  Identities=13%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             CCceEEEeCCCCcEEEEEeeC-CE-EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcC
Q 019672           27 KDGFKIFDSSTGRLCYERAVG-AF-SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK  104 (337)
Q Consensus        27 ~~g~~vw~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~  104 (337)
                      ++.+.|.|.++.+.+.....+ .. ..+.+..++.++.+.+       .|+.|.++|+.+++.+.++.......++++++
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-------CCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            345799999999988877643 33 2234455566655544       38999999999999999999888888899876


Q ss_pred             C--eEEEEE--CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-
Q 019672          105 K--RLVIVL--REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-  174 (337)
Q Consensus       105 ~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-  174 (337)
                      +  +++++.  .+.+.++|.++.++++.+.+...     ...+.++..++.+..+++.-. +.++|.+.|....+.... 
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-d~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-DTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-TTTEEEEEETTTSSCEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-cCCeEEEEEecccccccee
Confidence            5  455554  88999999999999998865422     224556665666664444433 468899999876543321 


Q ss_pred             -----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          175 -----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       175 -----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                           .......|+|+|++++.+......|-++|.++++.+..+
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence                 556789999999988776544444678998888765543

...

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.32  E-value=7.4e-10  Score=101.34  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=134.3

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc----CCceeEEEEc--------------------CCeEEE--EE-
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLN--------------------KKRLVI--VL-  111 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~i~~~--------------------~~~~~v--~~-  111 (337)
                      .++|+..+       |+.+|+||..+++...++.-    .+...+..|.                    .+..++  ++ 
T Consensus         6 ~~~A~~~~-------~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~   78 (541)
T KOG4547|consen    6 DYFALSTG-------DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP   78 (541)
T ss_pred             heEeecCC-------CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence            45666655       89999999999987766532    1223333331                    122222  22 


Q ss_pred             CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCC
Q 019672          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNG  186 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg  186 (337)
                      .|.|.+|++..++....+.+..++..+.++..+.+-..+.+++  .|+.+..|+.+.....+.     ..+.+++++|||
T Consensus        79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            7899999999999988888777777887777665555666666  599999999988765543     678999999999


Q ss_pred             CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC-----CCcccEEEEEeCCCcEEEEecCCC
Q 019672          187 MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS-----MQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       187 ~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d-----g~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      +.|++||.  . |++||+++++.+..|.  +|..+|.+++|.-+     |.+  +|.+...+.-+.+|-+...
T Consensus       157 ~~l~~as~--~-ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~--vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  157 KILLTASR--Q-IKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKY--VLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CEEEeccc--e-EEEEEccCceEEEEec--CCCcceEEEEEEEeccccccce--eeeccccccceeEEEEEcc
Confidence            99999974  3 7999999999999996  35778999999987     662  5555566667899988764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=5.6e-10  Score=104.55  Aligned_cols=214  Identities=12%  Similarity=0.055  Sum_probs=134.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC----CceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTK----DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~----~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      +...+.+.+|+|||+.|+..+.    ..+.+|++.+++...-.. .+......+.+++..++++...    .....|.+|
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~----~g~~~I~~~  272 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK----TGSLNLYVM  272 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC----CCCcEEEEE
Confidence            4567899999999999885432    236888998885432111 1223345778888888876542    113469999


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC--C--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVLR--E--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      |+++++..........+....|+|++  ++.+.+  +  .|+++|+.+++.. .+.....  ......++|++.++++.+
T Consensus       273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS--QNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECCCCCEEEEEE
Confidence            99988765444444466778888765  444443  2  5666677766432 3322221  223445667788887765


Q ss_pred             CC-CccEEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCCc--EEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          155 ST-TKGSVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       155 ~~-~dg~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .. ....|.+||+.++....  . .......|+|||++|+.++.++.  .+.++++ +|+....+..  +...+...+||
T Consensus       350 ~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~~p~Ws  426 (429)
T PRK03629        350 SNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVKFPAWS  426 (429)
T ss_pred             ccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcCCcccC
Confidence            31 13468889987765321  1 23456789999999999998864  3567777 4555555542  24457778888


Q ss_pred             c
Q 019672          229 Q  229 (337)
Q Consensus       229 ~  229 (337)
                      |
T Consensus       427 p  427 (429)
T PRK03629        427 P  427 (429)
T ss_pred             C
Confidence            7

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.31  E-value=1.7e-11  Score=107.12  Aligned_cols=114  Identities=14%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             EEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCcc--------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672          138 LCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHS--------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVF  202 (337)
Q Consensus       138 ~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~--------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vw  202 (337)
                      +..+.+.++.. .+|++|.  |..|+||-+.....              .|+..|+++.|+|+|..||+|+++|.+ -+|
T Consensus        16 v~s~dfq~n~~~~laT~G~--D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v-~lW   92 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAGG--DKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV-FLW   92 (434)
T ss_pred             eEEEEeccCcccceecccC--ccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE-EEE
Confidence            34444433333 8899984  89999998765332              144889999999999999999999974 699


Q ss_pred             EcC--------C-----Cc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          203 LVS--------E-----AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       203 d~~--------~-----~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      -..        +     .+  .+...-++ |...|+.++|+||+.   ++++++-|+++++||+..+....
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEe
Confidence            765        2     10  11222233 466799999999999   99999999999999998876543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=2.8e-10  Score=99.31  Aligned_cols=202  Identities=10%  Similarity=0.146  Sum_probs=135.3

Q ss_pred             CCCEEEEEcCCc-eEEEeCCCC-----cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           18 DNSGFALSTKDG-FKIFDSSTG-----RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        18 dg~~la~g~~~g-~~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      ||. |.+|.++| +.+|..+.+     +++.-..+.++..++-......++..||-+    .-+.++|||+++.+++.+-
T Consensus       115 dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke----~~n~lkiwdle~~~qiw~a  189 (412)
T KOG3881|consen  115 DGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKE----NINELKIWDLEQSKQIWSA  189 (412)
T ss_pred             CCE-EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchh----cccceeeeecccceeeeec
Confidence            444 45555555 699987733     333333345566665544444444444421    1278999999998777653


Q ss_pred             Ec--------CCce--eEEEEcC----CeEEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           92 NF--------LTSI--LAVRLNK----KRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        92 ~~--------~~~v--~~i~~~~----~~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ..        .-||  +++.|-+    ..++.++ -+.+++||.+.+ +++.++....+  .+.++...|.+..+.++. 
T Consensus       190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~--~is~~~l~p~gn~Iy~gn-  266 (412)
T KOG3881|consen  190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN--PISSTGLTPSGNFIYTGN-  266 (412)
T ss_pred             cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC--cceeeeecCCCcEEEEec-
Confidence            21        1243  4566633    3455555 679999999865 55667765555  455666667777888877 


Q ss_pred             CCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          156 TTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                       .-|.+..||++.++..      ..+.|+++..+|.+++||+++-|.. +||+|+++.+++.....   .+.+++|-+.+
T Consensus       267 -~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRy-vRIhD~ktrkll~kvYv---Ks~lt~il~~~  341 (412)
T KOG3881|consen  267 -TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRY-VRIHDIKTRKLLHKVYV---KSRLTFILLRD  341 (412)
T ss_pred             -ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecccee-EEEeecccchhhhhhhh---hccccEEEecC
Confidence             4799999999988754      2389999999999999999999975 79999999877765432   23467777765


Q ss_pred             CCC
Q 019672          230 SMQ  232 (337)
Q Consensus       230 dg~  232 (337)
                      +-+
T Consensus       342 ~~n  344 (412)
T KOG3881|consen  342 DVN  344 (412)
T ss_pred             Ccc
Confidence            543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.29  E-value=3.8e-09  Score=96.47  Aligned_cols=234  Identities=12%  Similarity=0.144  Sum_probs=138.0

Q ss_pred             EEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      ..+.|+|||+++.+.+.++ +.++|+.+++.+.+...+ ....++++.++.+++....      .++++.++|.++.+++
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--EE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec------CCCceeEeccccccce
Confidence            4568999999988777665 699999999988776543 3445677778887765543      5899999999999999


Q ss_pred             EEEEcC--------CceeEEEEcCC--eEEEEE--CCeEEEEECCCCeee--eeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           89 RELNFL--------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        89 ~~~~~~--------~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      .++...        +.+.+|..++.  .++++.  .+.|-+-|..+.+.+  ..+.....   .....++|++.++..+.
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~---~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRF---PHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TT---EEEEEE-TTSSEEEEEE
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccc---ccccccCcccceeeecc
Confidence            887643        25666765443  345555  367877787765433  23333222   23345566666655443


Q ss_pred             CCCccEEEEEEccCCccc---------cc--------------------------------------------------C
Q 019672          155 STTKGSVLVYNVMELHSH---------CE--------------------------------------------------A  175 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~---------~~--------------------------------------------------~  175 (337)
                      . .++.|-++|..+.+..         +.                                                  +
T Consensus       191 ~-~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G  269 (369)
T PF02239_consen  191 N-GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG  269 (369)
T ss_dssp             G-GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred             c-ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence            2 3556767766543211         00                                                  1


Q ss_pred             ceEEEEeCCCCCEEEEE---eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC-cEEEEec
Q 019672          176 PLAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSP  251 (337)
Q Consensus       176 ~i~~~~~s~dg~~lat~---s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~v~iw~l  251 (337)
                      .-.-+.-+|+++++...   +.+...|.|+|.++.+.+.++..+. ...+..+.|++||+  ...++.-..+ .|.|||.
T Consensus       270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~--~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK--EVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS--EEEEEEE--TTEEEEEET
T ss_pred             CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC--EEEEEEecCCCEEEEEEC
Confidence            11456779999999988   4443347899999998887775332 12378899999999  2444444444 7999998


Q ss_pred             CCCccc
Q 019672          252 GFAINQ  257 (337)
Q Consensus       252 ~~~~~~  257 (337)
                      ++.+..
T Consensus       347 ~Tl~~~  352 (369)
T PF02239_consen  347 KTLKEK  352 (369)
T ss_dssp             TTTEEE
T ss_pred             CCcEEE
Confidence            877653

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=9e-11  Score=106.34  Aligned_cols=203  Identities=13%  Similarity=0.145  Sum_probs=128.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +++|.+=|+|+.|+.||.+|++|++|. +.|||.-..|+++..+.   ..+..+.+.+..+--+++++     ..|..|+
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg-----AgDk~i~  120 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG-----AGDKLIK  120 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec-----cCcceEE
Confidence            568899999999999999999999987 79999887787776543   45566677666544444444     2599999


Q ss_pred             EEECCCCC----------EEEEEEcC-CceeEEEEc---CCeEEEEE-CCeEEEEECCCCeeeee-------e-cCCCCC
Q 019672           79 LFNTTTGT----------ALRELNFL-TSILAVRLN---KKRLVIVL-REKTYIYDANTLAILDT-------I-DTVPNL  135 (337)
Q Consensus        79 iwd~~~~~----------~~~~~~~~-~~v~~i~~~---~~~~~v~~-d~~i~i~d~~~~~~~~~-------~-~~~~~~  135 (337)
                      ++|+...+          .+..+..+ ..|..|+..   |+.+..++ ||+|+-||++....-..       + .-.+.-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99987422          12222222 356666654   44566666 99999999986311100       0 001111


Q ss_pred             ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcc------------------c------cc-----------CceEE
Q 019672          136 KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS------------------H------CE-----------APLAA  179 (337)
Q Consensus       136 ~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~------------------~------~~-----------~~i~~  179 (337)
                      ..+-++..+|. ..+||++|  .+-..++||.+....                  +      |-           .-++-
T Consensus       201 ielk~ltisp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             heeeeeeecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence            22233344443 34677777  488999999432110                  0      00           12567


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      ++|+|+|..|...-. |..++++|+..++.+..+
T Consensus       279 vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWG-GEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             EEECCCCcEEEEeeC-CeEEEEEeecCCCCceee
Confidence            899999986554433 223689999888765443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=3.4e-09  Score=91.86  Aligned_cols=222  Identities=14%  Similarity=0.163  Sum_probs=143.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ...+..++|+|.--.||++..|. +++||-.....  +.......+.++++-+.+...+.++.       ..-|.+|...
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-------r~gIciW~~s  170 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-------RAGICIWSDS  170 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-------cceeEEEEcC
Confidence            34588999999777788888765 59998655321  22222356777777665544444443       4679999754


Q ss_pred             CC----CE----------EEEEEcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           84 TG----TA----------LRELNFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        84 ~~----~~----------~~~~~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      ..    +.          +.....+.+|+.+.+++++...++    +..|.|||..++..+.-.  .....++.-+.++|
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP  248 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP  248 (445)
T ss_pred             cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC
Confidence            21    11          112233458999999998766554    679999999988655443  22344666778888


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-----------
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-----------  209 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~-----------  209 (337)
                      |+.++..+..  |+..++|........     -.+.|...+|+|+|++|.-++....  +|+.+.-.+.           
T Consensus       249 dgd~lfaAt~--davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k  324 (445)
T KOG2139|consen  249 DGDVLFAATC--DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIK  324 (445)
T ss_pred             CCCEEEEecc--cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccce
Confidence            8889888774  899999965433211     1278999999999998776665443  3555431111           


Q ss_pred             ----eEeec-----cCC--cceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          210 ----SYSFR-----RGT--YPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       210 ----~~~~~-----~~~--~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                          +..+.     .+.  --.++.+|+|.|.|.   +||+.-..+
T Consensus       325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe---yLav~fKg~  367 (445)
T KOG2139|consen  325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE---YLAVIFKGQ  367 (445)
T ss_pred             eeeeeccchhhhhhcCcccccCccceeeECCCCC---EEEEEEcCC
Confidence                11110     010  023578999999999   999875544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.27  E-value=1.8e-10  Score=104.21  Aligned_cols=194  Identities=16%  Similarity=0.149  Sum_probs=128.2

Q ss_pred             EEEEEcCCc-eEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE-EEcCCc
Q 019672           21 GFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE-LNFLTS   96 (337)
Q Consensus        21 ~la~g~~~g-~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~-~~~~~~   96 (337)
                      .|+.+++|| +.+.+- .++.....  +.+.+..-.+.+++..+  ++.|     .||.|++|.- +|-...+ .....+
T Consensus        77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgL--lt~G-----EDG~iKiWSr-sGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGL--LTAG-----EDGVIKIWSR-SGMLRSTVVQNEES  147 (737)
T ss_pred             eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCcee--eeec-----CCceEEEEec-cchHHHHHhhcCce
Confidence            466666665 555553 23332222  22333333444455544  4443     5999999974 3432222 234668


Q ss_pred             eeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc----
Q 019672           97 ILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH----  170 (337)
Q Consensus        97 v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~----  170 (337)
                      |.+++|.|+.  ++.+..+.+.|=.+.....+-..+.|+  .-++++++++.+.+++++|  +|-..+|||.....    
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHD--GiiL~~~W~~~s~lI~sgG--ED~kfKvWD~~G~~Lf~S  223 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHD--GLVLSLSWSTQSNIIASGG--EDFRFKIWDAQGANLFTS  223 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccC--cEEEEeecCccccceeecC--CceeEEeecccCcccccC
Confidence            9999997754  444557788887776544444455443  3567889999999999998  79999999986433    


Q ss_pred             ccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          171 SHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       171 ~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      ..|+.||++++|+|| +.++.+|.. + .|            |.. ...+.|..++||+||.   .++.|...|.+
T Consensus       224 ~~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~~-p~~GSifnlsWS~DGT---Q~a~gt~~G~v  280 (737)
T KOG1524|consen  224 AAEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FSS-PRVGSIFNLSWSADGT---QATCGTSTGQL  280 (737)
T ss_pred             Chhccceeeeeeccc-cceeeeeee-e-ee------------ecC-CCccceEEEEEcCCCc---eeeccccCceE
Confidence            346699999999999 777777764 3 45            111 1234599999999999   99999998875

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=3.9e-10  Score=97.59  Aligned_cols=149  Identities=11%  Similarity=0.180  Sum_probs=102.1

Q ss_pred             ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC---
Q 019672           96 SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL---  169 (337)
Q Consensus        96 ~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~---  169 (337)
                      .+..++|++..  +++++ |+.|++||-+. .....++ +.....+.++++-|.+.-..+.+.  .+-|.||.....   
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgC--r~gIciW~~s~tln~  175 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGC--RAGICIWSDSRTLNA  175 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeee--cceeEEEEcCccccc
Confidence            56677787643  33444 88999999766 3333333 233455666666554333222333  355999975421   


Q ss_pred             -cc------cc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          170 -HS------HC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       170 -~~------~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                       +.      .+        ..+|+++.|++||..++++|-+...|.|||..+++.+.-..++  ...+.-+.|||||.  
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd--  251 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGD--  251 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCCC--
Confidence             10      01        1789999999999999999988777899999998875433232  23477799999999  


Q ss_pred             cEEEEEeCCCcEEEEecCC
Q 019672          235 DILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~  253 (337)
                       +|.+++-|+..++|+...
T Consensus       252 -~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  252 -VLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             -EEEEecccceeeeehhcc
Confidence             999999999999997543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=4.6e-10  Score=108.63  Aligned_cols=272  Identities=14%  Similarity=0.136  Sum_probs=161.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-CCEEEEE----EccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-GAFSIVE----MLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      -++-.++++.++=.  .+|.+|.--.+.+||+..+.++..... +.+..-.    ..-.+..++.+..       -+.+.
T Consensus         4 ~s~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~-------~~~v~   74 (967)
T KOG0974|consen    4 VSSLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAK-------SDEVY   74 (967)
T ss_pred             ccccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEe-------eccee
Confidence            35567777877766  678888777789999998866543211 0000000    0000111111111       00111


Q ss_pred             EEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE--EEEeeCCCccEEEEc
Q 019672           79 LFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL--CAFSPSLNACFLAVP  153 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~  153 (337)
                      .=+... +....  ...-|  ..+.+....+++.. ++.+.+||...+..+..+....-..-.  +-+-.+++..+++++
T Consensus        75 ~~~~~~-~~~~~--~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g  151 (967)
T KOG0974|consen   75 VKEASN-QIIER--FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG  151 (967)
T ss_pred             ecchhh-hhhhh--ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence            000000 00000  01111  12223344455554 889999999888777666433221111  112235666788877


Q ss_pred             CCCCccEEEEEEccCCcc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          154 ASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .  .-+.|.+|+..-...     .|++.|.++.++-||+++|+.|+|.+ +|+|++.+.+.......+ |.+.|..+.|.
T Consensus       152 s--v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fg-HsaRvw~~~~~  227 (967)
T KOG0974|consen  152 S--VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTGFG-HSARVWACCFL  227 (967)
T ss_pred             c--ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccccc-ccceeEEEEec
Confidence            6  479999999863222     35699999999999999999999987 799999998876522223 57789999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  308 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  308 (337)
                      |+     .+++++.|.+.++|+.....-           ..+....-...|..+.          .+....++++..||.
T Consensus       228 ~n-----~i~t~gedctcrvW~~~~~~l-----------~~y~~h~g~~iw~~~~----------~~~~~~~vT~g~Ds~  281 (967)
T KOG0974|consen  228 PN-----RIITVGEDCTCRVWGVNGTQL-----------EVYDEHSGKGIWKIAV----------PIGVIIKVTGGNDST  281 (967)
T ss_pred             cc-----eeEEeccceEEEEEeccccee-----------hhhhhhhhcceeEEEE----------cCCceEEEeeccCcc
Confidence            87     499999999999996543221           1121222223555533          223356889999999


Q ss_pred             EEEEEEecC
Q 019672          309 FVEYIFSIN  317 (337)
Q Consensus       309 ~~~~~~~~~  317 (337)
                      ++.|.+...
T Consensus       282 lk~~~l~~r  290 (967)
T KOG0974|consen  282 LKLWDLNGR  290 (967)
T ss_pred             hhhhhhhcc
Confidence            999988543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.27  E-value=6.7e-10  Score=95.56  Aligned_cols=282  Identities=12%  Similarity=0.124  Sum_probs=155.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-eEEEeCC-CCc--EE-E-EEeeC--------------CEEEEEEccCCCE-EEEEeC
Q 019672            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSS-TGR--LC-Y-ERAVG--------------AFSIVEMLYSSSL-LAIVGA   66 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g-~~vw~~~-~~~--~~-~-~~~~~--------------~~~~~~~~~~~~~-~~~~~~   66 (337)
                      .-|.++.|+..|.+||+|..+| +.+|.-+ ..+  .. + ..+.|              .+.-+.+....+. ..++++
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            4589999999999999999888 5677422 221  11 1 11111              1122344444433 234444


Q ss_pred             CCCCCCCCceEEEEECCCCCEEE-EEEcC-----CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           67 GEQPSLSPRRLCLFNTTTGTALR-ELNFL-----TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        67 g~~~~~~d~~v~iwd~~~~~~~~-~~~~~-----~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                            .|++|++|-+....... .+..+     +.+..+.+     -+.. ...+...     .+ +.+....++--+.
T Consensus       106 ------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~vea-----~p-rRv~aNaHtyhiN  168 (433)
T KOG1354|consen  106 ------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEVEA-----SP-RRVYANAHTYHIN  168 (433)
T ss_pred             ------CCcceeeeeeeccccccccccccccCCCCccceeec-----eeeccccceeee-----ee-eeeccccceeEee
Confidence                  49999999876433221 11111     11221111     0000 0000000     01 1122233444467


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------c-----cCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcC
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------C-----EAPLAAIVLSSN-GMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~-----~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~  205 (337)
                      +++.+.|...+.++.   |-.|.+|.+.-...-        +     +.-|++..|+|. .+.++..|+.|+ ||+-|++
T Consensus       169 SIS~NsD~Et~lSAD---dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR  244 (433)
T KOG1354|consen  169 SISVNSDKETFLSAD---DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMR  244 (433)
T ss_pred             eeeecCccceEeecc---ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeech
Confidence            888888888887764   788999987633211        0     156899999994 568999999998 7999998


Q ss_pred             CCce------eEeeccCCc--------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc--
Q 019672          206 EATK------SYSFRRGTY--------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS--  269 (337)
Q Consensus       206 ~~~~------~~~~~~~~~--------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~--  269 (337)
                      ...+      +.+......        -+.|..+.||++|+   |+++-+- -+|+|||+.....+..--+-..++..  
T Consensus       245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr---yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR---YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc---EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence            4322      211111110        12378899999999   7876543 58999999765543310000011110  


Q ss_pred             ---c----ccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeee
Q 019672          270 ---I----LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREF  330 (337)
Q Consensus       270 ---~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  330 (337)
                         +    .-+.+.+.|+-              ++.++++|+-++.+++|+++..  ..+...++.+.
T Consensus       321 c~lYEnD~IfdKFec~~sg--------------~~~~v~TGsy~n~frvf~~~~g--sk~d~tl~asr  372 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSG--------------NDSYVMTGSYNNVFRVFNLARG--SKEDFTLEASR  372 (433)
T ss_pred             HHHhhccchhheeEEEEcC--------------CcceEecccccceEEEecCCCC--cceeecccccc
Confidence               1    11223444443              3368999999999999985433  22234444433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=8.9e-09  Score=93.88  Aligned_cols=273  Identities=14%  Similarity=0.161  Sum_probs=161.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCC-----CceEEEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS-----PRRLCLFN   81 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----d~~v~iwd   81 (337)
                      ..+.+...++++|++||.+.++-++|++..+.+.+.+........+.+.+..+++.  .-.......     .-.+.+|+
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~--T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLL--TWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccc--cccccccccCCCCCCCceeeee
Confidence            44577889999999999999888999999888665554444444444444444442  211111111     23578999


Q ss_pred             CCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE--CCeEEEEECCCCeee-eeecCCCCCceEEEEeeCCCccEEEE--cCC
Q 019672           82 TTTGTALRELNFLT-SILAVRLNKKRLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAV--PAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~--~~~  155 (337)
                      ++++.....+.-.. .-....|+.+..+++-  .+.+++|++.+.+.+ +.+.  ........+++.|....+|+  ++.
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~--~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS--VSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeee--ccceeeEEecCCCCCceEEEEccCC
Confidence            99865544443222 2256777777666654  778999988764322 2222  11223334444433333332  110


Q ss_pred             C-CccEEEEEE---------------------------------------------------------ccCCcc----cc
Q 019672          156 T-TKGSVLVYN---------------------------------------------------------VMELHS----HC  173 (337)
Q Consensus       156 ~-~dg~v~i~d---------------------------------------------------------~~~~~~----~~  173 (337)
                      . .-..|+||.                                                         ++....    ..
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k  269 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK  269 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence            0 112333333                                                         221110    01


Q ss_pred             cCceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEE
Q 019672          174 EAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHV  248 (337)
Q Consensus       174 ~~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~i  248 (337)
                      ++||.++.|+|+|+.++..-  .-.. +-|||++ +..+..|..|    +=+++-|+|.|+   +|+.++-+   |.+.|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnlr-~~~v~df~eg----pRN~~~fnp~g~---ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN---IILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccce-EEEEcCC-CCEeEeCCCC----CccceEECCCCC---EEEEeecCCCCCceEE
Confidence            28999999999998777653  3334 5789985 6777777554    346789999999   88888776   78999


Q ss_pred             EecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe------CCcEEEEEEe
Q 019672          249 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY------NGYFVEYIFS  315 (337)
Q Consensus       249 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~~~~~~~~  315 (337)
                      ||+...+...+         ...+......|++.+              .++++.+.      |+.++||...
T Consensus       341 wDv~n~K~i~~---------~~a~~tt~~eW~PdG--------------e~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  341 WDVPNRKLIAK---------FKAANTTVFEWSPDG--------------EYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             Eeccchhhccc---------cccCCceEEEEcCCC--------------cEEEEEeccccEEecCCeEEEEec
Confidence            99987443221         111223345676655              45554432      6778888775

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=7.5e-09  Score=94.27  Aligned_cols=235  Identities=13%  Similarity=0.182  Sum_probs=147.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCC----CCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP----SLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~d~~v~iwd~~~~   85 (337)
                      =+.+.|||-|++|++=-..|+.+|--++...+....+.++..+++++.-++++.-+.....    ......++|||+.+|
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            3689999999999999999999999888877777766788888888877887666543221    123468999999999


Q ss_pred             CEEEEEEc--CC-ceeE-EEEcCC--eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC--
Q 019672           86 TALRELNF--LT-SILA-VRLNKK--RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT--  157 (337)
Q Consensus        86 ~~~~~~~~--~~-~v~~-i~~~~~--~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--  157 (337)
                      ...+.+..  .. .+.- +.|+.+  +++....++|.||+.....++..-.  -...++-.++++|.+.+||+=.-..  
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks--lki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS--LKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccc--cCCccccCcccCCCcceEEEEcccccC
Confidence            98887765  22 2222 345544  4444447899999887654332110  1223444445555555554321000  


Q ss_pred             ------------ccE-----------------------------------------EEEEEccCCccc-----ccCceEE
Q 019672          158 ------------KGS-----------------------------------------VLVYNVMELHSH-----CEAPLAA  179 (337)
Q Consensus       158 ------------dg~-----------------------------------------v~i~d~~~~~~~-----~~~~i~~  179 (337)
                                  ...                                         +.|+.++.....     .+.+|..
T Consensus       371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~  450 (698)
T KOG2314|consen  371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIA  450 (698)
T ss_pred             CcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheee
Confidence                        000                                         111111111100     0167888


Q ss_pred             EEeCCCCCEEEEEeCC--CcEEEEEEcCC-C---ceeEeeccCCcceeEEEEEeecCCCcccEEEEEe---CCCcEEEEe
Q 019672          180 IVLSSNGMYIATASEQ--GTIIRVFLVSE-A---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFS  250 (337)
Q Consensus       180 ~~~s~dg~~lat~s~d--g~~i~vwd~~~-~---~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s---~dg~v~iw~  250 (337)
                      .+|.|.|..+++-+..  .+.+++|-+++ +   .++.++..    ...+.|.|||.|+   +++++.   ..|.+.++|
T Consensus       451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~---fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGR---FVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCc---EEEEEEecccccceEEEe
Confidence            9999999988876533  23367888773 2   23444432    2367899999999   777664   458899999


Q ss_pred             cCC
Q 019672          251 PGF  253 (337)
Q Consensus       251 l~~  253 (337)
                      ++.
T Consensus       524 ~~~  526 (698)
T KOG2314|consen  524 TDY  526 (698)
T ss_pred             cch
Confidence            874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.25  E-value=1.2e-09  Score=90.94  Aligned_cols=114  Identities=17%  Similarity=0.218  Sum_probs=84.4

Q ss_pred             cCCceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEc
Q 019672           93 FLTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNV  166 (337)
Q Consensus        93 ~~~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~  166 (337)
                      ..++|.+++|+|+  .++++.   +..|.+||++ ++.+..+..  .  ....+.++|++.+++++|.. ..|.|.+||+
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~--~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~  132 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--Q--PRNTISWSPDGRFLVLAGFGNLNGDLEFWDV  132 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--C--CceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            3457999999876  454543   5689999997 666666643  2  23456778888899988731 3588999999


Q ss_pred             cCCccccc---CceEEEEeCCCCCEEEEEeC------CCcEEEEEEcCCCceeEee
Q 019672          167 MELHSHCE---APLAAIVLSSNGMYIATASE------QGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       167 ~~~~~~~~---~~i~~~~~s~dg~~lat~s~------dg~~i~vwd~~~~~~~~~~  213 (337)
                      ++.+.+.+   ..++.++|||||++|++++.      |.. ++||+.. |+++.+.
T Consensus       133 ~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng-~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  133 RKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNG-FKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceecccc-EEEEEec-CeEeEec
Confidence            98776644   56899999999999999875      444 6899984 7776654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=5.8e-09  Score=97.95  Aligned_cols=209  Identities=15%  Similarity=0.063  Sum_probs=128.9

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.+||.+..... .......+....+.++++.+++++..    .....|.+||+.+++......+.....+..|++++  
T Consensus       186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE----RGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC----CCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence            578887655332 22222334445667778888887642    12467999999988765443444455567888765  


Q ss_pred             EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE--EEEEEccCCcccc----cCc
Q 019672          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS--VLVYNVMELHSHC----EAP  176 (337)
Q Consensus       107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~--v~i~d~~~~~~~~----~~~  176 (337)
                      +++..  ++  .|++||+.+++.. .+.....  .....+++|++..+++.+. .+|.  |.++|+.++....    ...
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~~lt~~g~~  337 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAERLTFQGNY  337 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEeecCCCC
Confidence            43333  33  6999999887643 3322211  2234566778888877653 3444  6666766554321    134


Q ss_pred             eEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEec
Q 019672          177 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSP  251 (337)
Q Consensus       177 i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l  251 (337)
                      ....+|||||++|+..+.++  ..|.+||+.+++.. .+..+.   ......|+|||+   +|+..+.+   +.|.++++
T Consensus       338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~---~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGS---MVLYATREGGRGVLAAVST  410 (433)
T ss_pred             ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence            55789999999999876543  13689999887754 443321   234578999999   77776664   34777776


Q ss_pred             CC
Q 019672          252 GF  253 (337)
Q Consensus       252 ~~  253 (337)
                      +.
T Consensus       411 ~g  412 (433)
T PRK04922        411 DG  412 (433)
T ss_pred             CC
Confidence            53

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.24  E-value=2.2e-07  Score=84.70  Aligned_cols=269  Identities=14%  Similarity=0.121  Sum_probs=155.9

Q ss_pred             CceEEEeC--CCCcEEEEE---eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--C--EEEEEE-cCCce
Q 019672           28 DGFKIFDS--STGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--T--ALRELN-FLTSI   97 (337)
Q Consensus        28 ~g~~vw~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--~--~~~~~~-~~~~v   97 (337)
                      +++.+|++  +++++....   .......+.+.++.+.+..+....   ..++.|..|.+...  +  .+.+.. .....
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP   89 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence            36766655  666553322   224445566666777666655421   13678988887653  3  233333 33455


Q ss_pred             eEEEEcC--CeEEEEE--CCeEEEEECCC-Ceeeee---ecC--------CCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           98 LAVRLNK--KRLVIVL--REKTYIYDANT-LAILDT---IDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        98 ~~i~~~~--~~~~v~~--d~~i~i~d~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.+.+++  +.++++.  ++.+.++++.. +.+...   +..        .......-++.++|++.+++++.. ....|
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~D~v  168 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GADRV  168 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CCCEE
Confidence            6688855  4566665  88999999976 333222   110        011122335566788888877764 35679


Q ss_pred             EEEEccCCc--ccc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC--CCce--eEeec---cCCcc-eeEE
Q 019672          162 LVYNVMELH--SHC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATK--SYSFR---RGTYP-STIF  223 (337)
Q Consensus       162 ~i~d~~~~~--~~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~--~~~~--~~~~~---~~~~~-~~i~  223 (337)
                      .+|++....  ...        ...-+.++|+|||+++....+....|.++++.  +++.  +..+.   .+... ....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999987654  211        15678999999999998888766667899887  4432  22221   11111 1367


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCc-ccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAI-NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  302 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~  302 (337)
                      .|++||||++  ++++....++|.+|+++... ....       +.        .+......+   ..+...+++++|++
T Consensus       249 ~i~ispdg~~--lyvsnr~~~sI~vf~~d~~~g~l~~-------~~--------~~~~~G~~P---r~~~~s~~g~~l~V  308 (345)
T PF10282_consen  249 EIAISPDGRF--LYVSNRGSNSISVFDLDPATGTLTL-------VQ--------TVPTGGKFP---RHFAFSPDGRYLYV  308 (345)
T ss_dssp             EEEE-TTSSE--EEEEECTTTEEEEEEECTTTTTEEE-------EE--------EEEESSSSE---EEEEE-TTSSEEEE
T ss_pred             eEEEecCCCE--EEEEeccCCEEEEEEEecCCCceEE-------EE--------EEeCCCCCc---cEEEEeCCCCEEEE
Confidence            8899999992  34445567889999995331 1110       00        011100000   11223567789998


Q ss_pred             EE-eCCcEEEEEEecCCCC
Q 019672          303 IT-YNGYFVEYIFSINNCC  320 (337)
Q Consensus       303 ~~-~dg~~~~~~~~~~~~~  320 (337)
                      ++ .++.+.+|.++.+.+.
T Consensus       309 a~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  309 ANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             EETTTTEEEEEEEETTTTE
T ss_pred             EecCCCeEEEEEEeCCCCc
Confidence            88 5789999999988876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=7.7e-08  Score=87.60  Aligned_cols=231  Identities=14%  Similarity=0.168  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCEEEEEcCC-----ceEEEeCCC--CcEEE--EEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672           10 VFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLCY--ERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~-----g~~vw~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      -..++++|++++|.+..+.     ++..|.++.  +++..  ...  ......+.+..+...++.+.-      .+++|.
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~v~  112 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGSVS  112 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTEEE
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCeEE
Confidence            3567889999998877552     366666554  44422  222  244466777777777766653      489999


Q ss_pred             EEECCCC-CEEEE---EEc-----------CCceeEEEEcCC--eEEEEE--CCeEEEEECCCCe--e--eeeecCCCCC
Q 019672           79 LFNTTTG-TALRE---LNF-----------LTSILAVRLNKK--RLVIVL--REKTYIYDANTLA--I--LDTIDTVPNL  135 (337)
Q Consensus        79 iwd~~~~-~~~~~---~~~-----------~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~--~--~~~~~~~~~~  135 (337)
                      ++++... +....   +.+           .....++.++|+  .++++.  .+.|.+|++....  +  ...+..+. .
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-G  191 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-G  191 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-T
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-C
Confidence            9999874 33222   211           124567888876  455544  5699999996643  2  22333222 1


Q ss_pred             ceEEEEeeCCCccEEEEcCCCCccEEEEEEcc--CCcc--ccc-----------CceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHS--HCE-----------APLAAIVLSSNGMYIATASEQGTIIR  200 (337)
Q Consensus       136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~--~~~~--~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~  200 (337)
                      .+--.+.++|++.++.+... .+++|.++++.  ++..  .+.           .....|+++|||++|.++......|-
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            22333445566666655543 58899999887  3321  111           25788999999999888876655578


Q ss_pred             EEEcC--CCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCC
Q 019672          201 VFLVS--EATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  253 (337)
Q Consensus       201 vwd~~--~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~  253 (337)
                      +|++.  +|++  +..+..+  ......++|+|+|+   +|+++. .+++|.+|+++.
T Consensus       271 vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~---~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGR---YLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSS---EEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCC---EEEEEecCCCeEEEEEEeC
Confidence            99993  3433  2233221  12257899999999   777776 557899999853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.22  E-value=1.1e-10  Score=105.62  Aligned_cols=88  Identities=18%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      +.|+..+|+|||++||+.|.||. +||||..+.+++..++.  .-+...||+|||||+   |+++|+.|..|.||.+...
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGK---yIvtGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGK---YIVTGGEDDLVTVWSFEER  364 (636)
T ss_pred             ccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCcc---EEEecCCcceEEEEEeccc
Confidence            67899999999999999999997 69999998877655532  123489999999999   9999999999999999766


Q ss_pred             cccCCCCccccccc
Q 019672          255 INQRRGGRTSSILG  268 (337)
Q Consensus       255 ~~~~~~~~~~~~~~  268 (337)
                      +-..+.+....|+.
T Consensus       365 RVVARGqGHkSWVs  378 (636)
T KOG2394|consen  365 RVVARGQGHKSWVS  378 (636)
T ss_pred             eEEEecccccccee
Confidence            55444333334443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.22  E-value=2.6e-10  Score=97.56  Aligned_cols=183  Identities=16%  Similarity=0.197  Sum_probs=131.2

Q ss_pred             EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeee
Q 019672           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL  126 (337)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~  126 (337)
                      .+.+.+.+++++..+        +-++.|=|..+-+...-+..-..|.-|.|..+  +++++.  ++.|.+|++...+-.
T Consensus        13 ~c~fSp~g~yiAs~~--------~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLS--------RYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeeeeee--------eeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            456778888888765        34788888776654433333345656666544  333333  789999999888777


Q ss_pred             eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeC--------
Q 019672          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASE--------  194 (337)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~--------  194 (337)
                      ..++.  ++.++.+.+.+|++..+...+. -+-.|.+|.+.+.+..+    +..+..++|+|||++.|-.+.        
T Consensus        85 ckIde--g~agls~~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   85 CKIDE--GQAGLSSISWSPDGRHILLTSE-FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             EEecc--CCCcceeeeECCCcceEeeeec-ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence            77764  4567888899999966665554 58889999998876542    266789999999999887765        


Q ss_pred             ---------------------------CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672          195 ---------------------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  247 (337)
Q Consensus       195 ---------------------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~  247 (337)
                                                 ||..+-|||.--.-++..+.++.   .+..++|||.++   +|++|+.|+.++
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~q---flavGsyD~~lr  235 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQ---FLAVGSYDQMLR  235 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeecc---ceeEEEeccccc---eEEeeccchhhh
Confidence                                       56667788865444444443322   378899999999   999999999998


Q ss_pred             EEe
Q 019672          248 VFS  250 (337)
Q Consensus       248 iw~  250 (337)
                      |.+
T Consensus       236 vln  238 (447)
T KOG4497|consen  236 VLN  238 (447)
T ss_pred             hhc
Confidence            865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.1e-08  Score=96.22  Aligned_cols=173  Identities=16%  Similarity=0.032  Sum_probs=107.9

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      ..+|.+||........-..+...+....|++++  ++.+.    ...|++||+.+++... +.....  ...+..++|++
T Consensus       183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG  259 (433)
T PRK04922        183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDG  259 (433)
T ss_pred             eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCC
Confidence            457999998654433333445578888888765  44333    2369999998775432 221111  12345667778


Q ss_pred             cEEEEcCC-CCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcce
Q 019672          148 CFLAVPAS-TTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       148 ~~la~~~~-~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ..+++... .....|.+||+.++.....    ......+|+|||++|+.++.. |. .|.++|+.+++.. .+...  ..
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g~  336 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--GN  336 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--CC
Confidence            77765422 1234699999987654321    345678999999999988753 33 2456677766542 23211  12


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCCc
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI  255 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~~  255 (337)
                      .....+|||||+   +|+..+.++   .|.+||+.++.
T Consensus       337 ~~~~~~~SpDG~---~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        337 YNARASVSPDGK---KIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CccCEEECCCCC---EEEEEECCCCceeEEEEECCCCC
Confidence            234689999999   888765443   58999986654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=8.6e-09  Score=95.11  Aligned_cols=256  Identities=13%  Similarity=0.105  Sum_probs=142.1

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      +..+.+++.++ +..+|.++|+++......+..........+.+ ++..      .++.|..||.++|+.+-+.....+.
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v-~v~~------~~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLV-VVRT------NDGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEE-EEEC------CCCeEEEEEcCCCceeeEEccCCCc
Confidence            44555665554 57778777877765543221111111122333 3333      3789999999999988776554332


Q ss_pred             eE------EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC--Cc---eEEEEeeCC--CccEEEEcCCCCccEEEE
Q 019672           98 LA------VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN--LK---GLCAFSPSL--NACFLAVPASTTKGSVLV  163 (337)
Q Consensus        98 ~~------i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--~~---~~~~~~~~~--~~~~la~~~~~~dg~v~i  163 (337)
                      ..      .....+.+++.. ++.+..+|+.+++.+.+......  ..   .+..+...|  .+..+.+.+  .+|.+..
T Consensus       178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~--~~g~l~a  255 (377)
T TIGR03300       178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS--YQGRVAA  255 (377)
T ss_pred             eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE--cCCEEEE
Confidence            11      112334444444 68999999999987655432110  00   000010001  122444444  4789999


Q ss_pred             EEccCCcccccCceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC
Q 019672          164 YNVMELHSHCEAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       164 ~d~~~~~~~~~~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                      ||..+++.....+... .....++..+..++.||. +..+|..+|+.+.+..... .....+...  .+.   .|.+++.
T Consensus       256 ~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~---~l~~~~~  328 (377)
T TIGR03300       256 LDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGV-VVALDRRSGSELWKNDELK-YRQLTAPAV--VGG---YLVVGDF  328 (377)
T ss_pred             EECCCCcEEEeeccCCccCceEeCCEEEEECCCCe-EEEEECCCCcEEEcccccc-CCccccCEE--ECC---EEEEEeC
Confidence            9999887654311111 111124667888888997 5799999999876653211 111122222  345   7899999


Q ss_pred             CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672          243 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  312 (337)
Q Consensus       243 dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~  312 (337)
                      +|.|+++|.++++..-+      +.   ++.  ..++..          |.- -++.|++++.||+++.|
T Consensus       329 ~G~l~~~d~~tG~~~~~------~~---~~~--~~~~~s----------p~~-~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       329 EGYLHWLSREDGSFVAR------LK---TDG--SGIASP----------PVV-VGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             CCEEEEEECCCCCEEEE------EE---cCC--CccccC----------CEE-ECCEEEEEeCCceEEEe
Confidence            99999999876654211      00   000  001111          111 12679999999999887

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=1.2e-08  Score=96.01  Aligned_cols=211  Identities=14%  Similarity=0.095  Sum_probs=132.0

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.++|.+..... .......+....+.++++.+++++..    ..+..|.+||+.+++......+...+....|++++  
T Consensus       184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec----CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            567787655432 22233456667788888888888742    12578999999988765433455567778888765  


Q ss_pred             EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCcccc----cCce
Q 019672          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC----EAPL  177 (337)
Q Consensus       107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~----~~~i  177 (337)
                      +++..  ++  .|++||+.+++.. .+.....  ......++|++..+++.+.. ....|.++|+..+....    ...+
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~  336 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY  336 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence            33333  33  5888899877543 3332222  22334566778787766531 12368888876654321    2456


Q ss_pred             EEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC------cEEEE
Q 019672          178 AAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG------SLHVF  249 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg------~v~iw  249 (337)
                      ....|+|||++||..+.++  ..|.+||+.++.. ..+..+   ..+.++.|+|||+   +|+..+.++      .+.++
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~---~i~~~~~~~~~~~~~~L~~~  409 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGR---VIMFFRQTPGSGGAPKLYTV  409 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCC---EEEEEEccCCCCCcceEEEE
Confidence            7789999999999877543  2357888765543 334322   2356789999999   777655432      46777


Q ss_pred             ecCCC
Q 019672          250 SPGFA  254 (337)
Q Consensus       250 ~l~~~  254 (337)
                      |+...
T Consensus       410 dl~g~  414 (435)
T PRK05137        410 DLTGR  414 (435)
T ss_pred             ECCCC
Confidence            77543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=2.4e-10  Score=103.92  Aligned_cols=202  Identities=12%  Similarity=0.115  Sum_probs=124.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      +-+|.+||.|+...+.+..+.+|+-|| ++.|++....          +.-.+.++.-.+..+.+++..-.+++.     
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc-----  414 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC-----  414 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee-----
Confidence            347899999999999999999998887 6999654221          111122222233233344322223332     


Q ss_pred             CCCceEEEEECCCCCEEEEEEc---CCceeEEEEcCCeEEE-EECCeEEEEECCCCee---eeeecCC--CCC---ceEE
Q 019672           72 LSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKRLVI-VLREKTYIYDANTLAI---LDTIDTV--PNL---KGLC  139 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~v-~~d~~i~i~d~~~~~~---~~~~~~~--~~~---~~~~  139 (337)
                      ++|++|++|+.....+ +++..   +.-.+.+.+....... ..+.....+++.+.+.   +..+...  +.+   ..+.
T Consensus       415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in  493 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN  493 (577)
T ss_pred             cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence            2599999999877665 33322   1233445554333222 2244444444433322   2222111  111   1122


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      -+-.+|...+.+++.  +|+.|+++|..++...|.     ..++++++.|+|-+|++++.||. +++|.+....++.+.
T Consensus       494 ~vVs~~~~~~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~es  569 (577)
T KOG0642|consen  494 KVVSHPTADITFTAH--EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLES  569 (577)
T ss_pred             eEEecCCCCeeEecc--cCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeecc
Confidence            333455666777665  799999999999887654     78999999999999999999998 699999877665544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=1.8e-09  Score=94.32  Aligned_cols=236  Identities=11%  Similarity=0.041  Sum_probs=153.1

Q ss_pred             EEccCCCEEEEEeCCCCCCCCCceEEEEECC------CCCEEEEEEcC--CceeEEEEcC-CeEEEEE--CCeEEEEECC
Q 019672           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT------TGTALRELNFL--TSILAVRLNK-KRLVIVL--REKTYIYDAN  121 (337)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~------~~~~~~~~~~~--~~v~~i~~~~-~~~~v~~--d~~i~i~d~~  121 (337)
                      ++.|+.|...+++||     .|..+++|++.      +.+++....++  +.|.++.|+. +..+..+  +++|...|+.
T Consensus        61 AlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             eeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence            456666677777776     69999999974      44666655544  5899999964 4454444  7899999999


Q ss_pred             CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----c----cCceEEEEeCCC-CCEEEEE
Q 019672          122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----C----EAPLAAIVLSSN-GMYIATA  192 (337)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~----~~~i~~~~~s~d-g~~lat~  192 (337)
                      +.+.+..+....+...++.++.+|....+++..  .+|.|.+||.+.....    .    ......+-|+|. -.+|+++
T Consensus       136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t--~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT--RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             cceeeeeecccCcccceeecccCCCCceEEEEe--cCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence            988877775555556778888888777888776  5899999999865421    1    155778889995 4578888


Q ss_pred             eCCCcEEEEEEcCCCceeEeeccCCc------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccc
Q 019672          193 SEQGTIIRVFLVSEATKSYSFRRGTY------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI  266 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~~~~~------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~  266 (337)
                      ++.|. +.|||.+..+.. .++++..      ..+-.++.|+|.|.   .|.+--....--+||+-.+..+.-+      
T Consensus       214 ~~~~G-~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~---Q~msiRR~~~P~~~D~~S~R~~V~k------  282 (609)
T KOG4227|consen  214 SETGG-PNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGN---QFMSIRRGKCPLYFDFISQRCFVLK------  282 (609)
T ss_pred             cccCC-CCceeeccccch-HHhhhccccCcccchhhhheeeCCCCC---eehhhhccCCCEEeeeecccceeEe------
Confidence            88887 489999765431 1111111      11245788999998   6665544444456676544332210      


Q ss_pred             cccccc-ccce--eecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          267 LGSILP-ESVN--EVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       267 ~~~~~~-~~~~--~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                       ...-| .++.  .+-+.++           .+...+++|+.+=-+++|.+....
T Consensus       283 -~D~N~~GY~N~~T~KS~~F-----------~~D~~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  283 -SDHNPNGYCNIKTIKSMTF-----------IDDYTVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             -ccCCCCcceeeeeeeeeee-----------ecceeeeccCcccceEEEecCCCc
Confidence             00001 1111  1111111           223568999999999999995543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=1.4e-08  Score=95.47  Aligned_cols=214  Identities=10%  Similarity=0.007  Sum_probs=129.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC----CceEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTK----DGFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~----~g~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+..++.+.+|+|||+.|+..+.    ..+.+||+.+++... ....+......+.+++..+++....    .....|.+
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~  274 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQ----GGNTDIYT  274 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEec----CCCceEEE
Confidence            45678999999999999886643    236899998886432 2122333445677777777766531    01346888


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEEC----CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      ||+.+++...............|++++  +++..+    ..|+++|+.+++.. .+....  .......++|++..+++.
T Consensus       275 ~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~--~~~~~~~~SpdG~~ia~~  351 (435)
T PRK05137        275 MDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG--GRYSTPVWSPRGDLIAFT  351 (435)
T ss_pred             EECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC--CcccCeEECCCCCEEEEE
Confidence            899887654332233345567787764  554443    26889998766443 332211  123334566788888876


Q ss_pred             CCC-CccEEEEEEccCCccc---ccCceEEEEeCCCCCEEEEEeCCC-----cEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          154 AST-TKGSVLVYNVMELHSH---CEAPLAAIVLSSNGMYIATASEQG-----TIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       154 ~~~-~dg~v~i~d~~~~~~~---~~~~i~~~~~s~dg~~lat~s~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      ... ....|.+||+......   ....+....|+|||+.|+..+.++     ..+.++|+..+.. ..+..   ...+..
T Consensus       352 ~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~  427 (435)
T PRK05137        352 KQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASD  427 (435)
T ss_pred             EcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccC
Confidence            531 1246888897544321   113467889999999988766542     2356778765543 34421   223555


Q ss_pred             EEeec
Q 019672          225 LSFGQ  229 (337)
Q Consensus       225 l~fs~  229 (337)
                      .+|||
T Consensus       428 p~Wsp  432 (435)
T PRK05137        428 PAWSP  432 (435)
T ss_pred             cccCC
Confidence            67775

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.15  E-value=1.2e-08  Score=87.13  Aligned_cols=221  Identities=15%  Similarity=0.149  Sum_probs=147.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCC---cEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTG---RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..++|+|-+|++|++.+|++.++ .+.||.....   +..++...  ..+..+++.+.+|.+..++.       |+.-.+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayV   81 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYV   81 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCccc
Confidence            35799999999999999999887 5789876554   34454433  44566777777777766654       899999


Q ss_pred             EEC-CCCCE---EEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeee---eeecCCCCCceEEEEeeCCCccE
Q 019672           80 FNT-TTGTA---LRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        80 wd~-~~~~~---~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      |.. ..++-   +..+.++..+++|.|+|+  .+++.+ ...|.||-++...--   +.+.. +....+.+++++|++.+
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk-PirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC-ccccceeeeeccCCcce
Confidence            988 44432   233467788999999875  455544 457777766543211   11211 22235778899999988


Q ss_pred             EEEcCCCCccEEEEEEcc-----CC-------------ccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          150 LAVPASTTKGSVLVYNVM-----EL-------------HSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~-----~~-------------~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +|.++  .|+..+|+..-     ..             ...     ..+.|..+.|+|+|..||-.+-|++ +.+-|...
T Consensus       161 laaGs--~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~  237 (361)
T KOG1523|consen  161 LAAGS--TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAG  237 (361)
T ss_pred             ecccc--cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCC
Confidence            88877  59999998642     10             000     1177999999999999999999998 57878765


Q ss_pred             Cc-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          207 AT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       207 ~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                      .. .+......  .-+..++.|-.+..    ++.++.|
T Consensus       238 p~~~v~~~~~~--~lP~ls~~~ise~~----vv~ag~~  269 (361)
T KOG1523|consen  238 PSERVQSVATA--QLPLLSVSWISENS----VVAAGYD  269 (361)
T ss_pred             Cchhccchhhc--cCCceeeEeecCCc----eeecCCC
Confidence            54 34443322  13466677765543    4444455

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=6.2e-08  Score=89.42  Aligned_cols=262  Identities=14%  Similarity=0.110  Sum_probs=153.0

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      +..+.+++.++ +..+|..+|+++...+.............+.+ +++.      .++.|..+|.++|+.+.+......+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v-~v~~------~~g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLV-FVGT------EKGEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEE-EEEc------CCCEEEEEECCCCcEeeeeccCcee
Confidence            45666666655 68899999998877654332111122233333 3443      3789999999999998877665544


Q ss_pred             eE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE---EEEeeCCCccEEEEcCCCCccEEEEEEccCCccc
Q 019672           98 LA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH  172 (337)
Q Consensus        98 ~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~  172 (337)
                      .+ .....+.+++.. ++.++.+|.++++.+.++.........   ...... ++ .++++.  .+|.+..+|+.+++..
T Consensus       138 ~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~--~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       138 LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF--AGGKLVALDLQTGQPL  213 (377)
T ss_pred             ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC--CCCEEEEEEccCCCEe
Confidence            32 123445555554 789999999999887776543221110   000111 12 344444  3788999999888754


Q ss_pred             ccCce------------EEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEE
Q 019672          173 CEAPL------------AAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  238 (337)
Q Consensus       173 ~~~~i------------~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~la  238 (337)
                      .+..+            ..+.-+|  .+..+..++.+|. ++.||.++|+.+.+.....    .....  .++.   .+.
T Consensus       214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~~----~~~p~--~~~~---~vy  283 (377)
T TIGR03300       214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDASS----YQGPA--VDDN---RLY  283 (377)
T ss_pred             eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccCC----ccCce--EeCC---EEE
Confidence            32110            0111112  3457777888887 5899999999887664221    11222  2344   688


Q ss_pred             EEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          239 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       239 s~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      +++.+|.|+.+|..+++..-+      +  ..++..   .++.          | -..++.|++++.||.++.++  .++
T Consensus       284 v~~~~G~l~~~d~~tG~~~W~------~--~~~~~~---~~ss----------p-~i~g~~l~~~~~~G~l~~~d--~~t  339 (377)
T TIGR03300       284 VTDADGVVVALDRRSGSELWK------N--DELKYR---QLTA----------P-AVVGGYLVVGDFEGYLHWLS--RED  339 (377)
T ss_pred             EECCCCeEEEEECCCCcEEEc------c--ccccCC---cccc----------C-EEECCEEEEEeCCCEEEEEE--CCC
Confidence            888999999999876643210      0  000000   0000          0 01236899999999888775  455


Q ss_pred             CCeeceEE
Q 019672          319 CCESTWTL  326 (337)
Q Consensus       319 ~~~~~~~~  326 (337)
                      ++. .|.+
T Consensus       340 G~~-~~~~  346 (377)
T TIGR03300       340 GSF-VARL  346 (377)
T ss_pred             CCE-EEEE
Confidence            553 4444

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=5.9e-08  Score=90.95  Aligned_cols=207  Identities=15%  Similarity=0.081  Sum_probs=122.6

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.++|.+..... .......+....+.++++.+++++..    .....|.+||+.+++......+...+....|+|++  
T Consensus       178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE----SKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc----CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            456666543221 11222344455677888888887742    12357999999998765444455566678888875  


Q ss_pred             EEEEE--CCe--EEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc--cCCccc--c--cCc
Q 019672          107 LVIVL--REK--TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--MELHSH--C--EAP  176 (337)
Q Consensus       107 ~~v~~--d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~--~~~~~~--~--~~~  176 (337)
                      +++..  ++.  |+++|+..+. ...+..+..  ......++||+..+++.+. .+|...||.+  .++...  .  ...
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~~~lt~~g~~  329 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSD-RGGAPQIYRMPASGGAAQRVTFTGSY  329 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEec-CCCCcEEEEEECCCCceEEEecCCCC
Confidence            44333  454  5555665544 333432221  1223456778888876653 3456666654  333221  1  123


Q ss_pred             eEEEEeCCCCCEEEEEeCCCc--EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC-c--EEEEec
Q 019672          177 LAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-S--LHVFSP  251 (337)
Q Consensus       177 i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~--v~iw~l  251 (337)
                      ....+|||||++||..+.++.  .|.+||+.+++.. .+..+   .......|+|||+   +|+.++.++ .  +++.++
T Consensus       330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~---~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGR---YILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCC---EEEEEEecCCCEEEEEEEC
Confidence            446789999999998876642  3689999888653 33322   1235679999999   777776554 3  444444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.11  E-value=3.3e-10  Score=107.24  Aligned_cols=228  Identities=11%  Similarity=0.077  Sum_probs=148.5

Q ss_pred             EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeee
Q 019672           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDT  128 (337)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~  128 (337)
                      +..++..+..++.|     +.|.-|+||..+++.++.....+ +.|++++.+.+.+.++.   |.-|++|.++++.++..
T Consensus       195 ca~fDrtg~~Iitg-----sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv  269 (1113)
T KOG0644|consen  195 CAIFDRTGRYIITG-----SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV  269 (1113)
T ss_pred             eeeeccccceEeec-----CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH
Confidence            33444444334444     46999999999999999887655 48999999877766654   66799999999999988


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-CCc-cc-------cc-------------------------
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH-SH-------CE-------------------------  174 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-~~~-~~-------~~-------------------------  174 (337)
                      +..+.+  .+.+++++|..    +.+  .||++++||.+ ... ..       ..                         
T Consensus       270 Lrghtg--avtaiafsP~~----sss--~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  270 LRGHTG--AVTAIAFSPRA----SSS--DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             Hhcccc--ceeeeccCccc----cCC--CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            876654  57777777643    333  59999999987 110 00       00                         


Q ss_pred             -CceEEEEeCCCCCEEEEEeCCCc----------EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          175 -APLAAIVLSSNGMYIATASEQGT----------IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       175 -~~i~~~~~s~dg~~lat~s~dg~----------~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                       ..+.++++..++-.+++.+.|-.          .+.+|++.+|++++.+..  +...++.|.|+|-+.  -...+++.|
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~--ri~msag~d  417 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNP--RIAMSAGYD  417 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc--cccceeeeeecCCCc--HhhhhccCC
Confidence             22334444444444444443321          246888888887776642  345688899998776  266788999


Q ss_pred             CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          244 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       244 g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      |...|||+-.+...+.      |.   .++  ..+          ....|.+++..++..-.-|.++|+..-..+
T Consensus       418 gst~iwdi~eg~pik~------y~---~gh--~kl----------~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  418 GSTIIWDIWEGIPIKH------YF---IGH--GKL----------VDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             CceEeeecccCCccee------ee---ccc--cee----------eccccCCCCceEecCCCCCceEEeccCCCc
Confidence            9999999977665431      11   111  001          111235556777777778888888764333

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=6e-09  Score=101.10  Aligned_cols=182  Identities=14%  Similarity=0.150  Sum_probs=134.4

Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce-----eEEEEcCCeEEEEE---CCeEEEEECCCCee
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI-----LAVRLNKKRLVIVL---REKTYIYDANTLAI  125 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-----~~i~~~~~~~~v~~---d~~i~i~d~~~~~~  125 (337)
                      +.+....+++...       ++.+-+||...+....++...+..     .-+-.+++.+.++.   -+.|.+|+....+.
T Consensus        95 l~~e~k~i~l~~~-------~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   95 LFEENKKIALVTS-------RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             hhhhcceEEEEEc-------CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            3344455566654       899999999988877777665532     12234566666654   68999999863322


Q ss_pred             eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEE
Q 019672          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTII  199 (337)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i  199 (337)
                      -..+..|  ...+..+..+-++.++++.+  +|.++++|++.+.+..      |.+.|..++|.|+  +|+|+++|-+ .
T Consensus       168 p~~l~GH--eG~iF~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-c  240 (967)
T KOG0974|consen  168 PIRLKGH--EGSIFSIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-C  240 (967)
T ss_pred             cceeccc--CCceEEEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-E
Confidence            2223333  34567778878899999998  6999999999988764      4588999999999  9999999987 5


Q ss_pred             EEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          200 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       200 ~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      |+|+.. ++.+.+++ +|....|..++..++..   .+.+++.|+++++|++...
T Consensus       241 rvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  241 RVWGVN-GTQLEVYD-EHSGKGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEecc-cceehhhh-hhhhcceeEEEEcCCce---EEEeeccCcchhhhhhhcc
Confidence            999764 45555554 33344599999999888   9999999999999998654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=7.9e-08  Score=90.10  Aligned_cols=182  Identities=18%  Similarity=0.082  Sum_probs=108.8

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCC
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~  132 (337)
                      ..+++++..    .....|.+||...............+....|+|++  ++...  +  ..|++||+.+++... +...
T Consensus       164 ~~iayv~~~----~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~  238 (427)
T PRK02889        164 TRIAYVIKT----GNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF  238 (427)
T ss_pred             cEEEEEEcc----CCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC
Confidence            446666532    12457888887543333333455678888998875  33333  2  369999998886543 2211


Q ss_pred             CCCceEEEEeeCCCccEEEEcCCCCccEEEEE--EccCCccc--c--cCceEEEEeCCCCCEEEEEeCC-CcEEEEEEc-
Q 019672          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--NVMELHSH--C--EAPLAAIVLSSNGMYIATASEQ-GTIIRVFLV-  204 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~--d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~d-g~~i~vwd~-  204 (337)
                      .  ....+..++|++..+++... .+|...||  |+..+...  .  ........|+|||++|+..+.. |. ..||.+ 
T Consensus       239 ~--g~~~~~~~SPDG~~la~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~  314 (427)
T PRK02889        239 K--GSNSAPAWSPDGRTLAVALS-RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMP  314 (427)
T ss_pred             C--CCccceEECCCCCEEEEEEc-cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEE
Confidence            1  12335567788878876433 36665555  55443321  1  1345678999999998877754 44 356654 


Q ss_pred             -CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCCc
Q 019672          205 -SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI  255 (337)
Q Consensus       205 -~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~~  255 (337)
                       .+++. ..+...  .......+|||||+   +|+..+.++   .|.+||+..+.
T Consensus       315 ~~~g~~-~~lt~~--g~~~~~~~~SpDG~---~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        315 ASGGAA-QRVTFT--GSYNTSPRISPDGK---LLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             CCCCce-EEEecC--CCCcCceEECCCCC---EEEEEEccCCcEEEEEEECCCCC
Confidence             44443 222111  11234578999999   888877664   59999987654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=7.4e-09  Score=94.18  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=112.8

Q ss_pred             cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEee--CCCccEEEEcCCCCccEEEEEEcc
Q 019672           93 FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP--SLNACFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus        93 ~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~~dg~v~i~d~~  167 (337)
                      |.+-|.++.|+.++.++++   |-.+.|||.-..++++.+.+ .+...+.+..+  ...+..++++.  .|..|+++|+.
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHtaNIFsvKFvP~tnnriv~sgA--gDk~i~lfdl~  125 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTANIFSVKFVPYTNNRIVLSGA--GDKLIKLFDLD  125 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec-ccccceeEEeeeccCCCeEEEecc--CcceEEEEecc
Confidence            3457899999988766655   45899999988889999976 34556665554  33455666665  59999999998


Q ss_pred             CCccc---------------ccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCce-------eEeec-cCCcceeEE
Q 019672          168 ELHSH---------------CEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATK-------SYSFR-RGTYPSTIF  223 (337)
Q Consensus       168 ~~~~~---------------~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~-------~~~~~-~~~~~~~i~  223 (337)
                      ..+..               |+..|..++--|++ +.+-++++||+ ||-+|++....       ...+. .....-...
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhheee
Confidence            64321               23678889999998 78999999998 69999986431       11110 000112478


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |+..||...  .+||+|+.|-.+++||.+.
T Consensus       205 ~ltisp~rp--~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  205 CLTISPSRP--YYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eeeecCCCC--ceEEecCCCchhhhhhhhh
Confidence            999999988  4999999999999999643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.04  E-value=1.3e-07  Score=88.32  Aligned_cols=172  Identities=15%  Similarity=0.049  Sum_probs=107.9

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE--EEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      ...|.++|...+....-......+....|++++-  +.+.  +  ..|++||+.+++...... ...  ...+..++|++
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~--~~~~~~~spDg  245 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG--MNGAPAFSPDG  245 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC--CccceEECCCC
Confidence            4578888886544333333444677788887653  3333  2  479999998875433222 221  22345566777


Q ss_pred             cEEEEcCC-CCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCC-c-EEEEEEcCCCceeEeeccCCcce
Q 019672          148 CFLAVPAS-TTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       148 ~~la~~~~-~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg-~-~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ..+++... .....|.+||+.++....    .......+|+|||++|+..+..+ . .|.++|+.+++.. .+...  ..
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~  322 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GG  322 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CC
Confidence            77765432 123468889987664321    13345778999999988776543 2 2567888776643 33221  23


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCC---cEEEEecCCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFA  254 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~~  254 (337)
                      .+..++|+|||+   +|+.++.++   .|.+||+...
T Consensus       323 ~~~~~~~spdg~---~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       323 YNASPSWSPDGD---LIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CccCeEECCCCC---EEEEEEccCCceEEEEEeCCCC
Confidence            356789999999   888888776   7888888653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=2.9e-08  Score=90.88  Aligned_cols=174  Identities=15%  Similarity=0.182  Sum_probs=131.2

Q ss_pred             ceEEEEECCCCCEEEEEEcC-CceeEEEEcCC-eEEEEE--CCeEEEEECCCCeeeeeecCCC---------CCceEEEE
Q 019672           75 RRLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVP---------NLKGLCAF  141 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~  141 (337)
                      ..|.=.|++.|+-+.-+... ..+..+.+++- ++++++  ++.+..||.+....+..+....         +...+.++
T Consensus       155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence            57777899999988877766 47888888764 344444  8899999998876655553221         12337889


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      +++.++..++++.  .+|.|.|||+++.+...      ..||..+.|.+.+..=...|.|..++||||-.+|+....+..
T Consensus       235 ~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp  312 (703)
T KOG2321|consen  235 KFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP  312 (703)
T ss_pred             EecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc
Confidence            9988899999887  48999999999887642      288999999886443333445666789999999998776642


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                         ...++.+++-|++.   +++++-.++.++.|=+..-.+
T Consensus       313 ---t~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~LGP  347 (703)
T KOG2321|consen  313 ---TSDLNDFCFVPGSG---MFFTANESSKMHTYYIPSLGP  347 (703)
T ss_pred             ---cCCcCceeeecCCc---eEEEecCCCcceeEEccccCC
Confidence               34588999999998   999999999999988765443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.03  E-value=2.3e-07  Score=86.82  Aligned_cols=207  Identities=15%  Similarity=0.112  Sum_probs=125.6

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.++|.+..... .......+....+.++++.++++....    ....|.+||+.+++......+...+.+..|++++  
T Consensus       172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            456676544322 111112344456777778888776421    2368999999998765544555566678888764  


Q ss_pred             EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCccc----ccCce
Q 019672          107 LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSH----CEAPL  177 (337)
Q Consensus       107 ~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~----~~~~i  177 (337)
                      +++..  +  ..|++||+.+++... +......  .....+++++..+++.+.. ....|.++|+.+++..    ....+
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~--~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~  324 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGI--DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN  324 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEE-CCCCCCC--CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence            44443  2  369999998775432 3222211  1223455677777765421 1236777888765432    12556


Q ss_pred             EEEEeCCCCCEEEEEeCCC---cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc---EEEEec
Q 019672          178 AAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFSP  251 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~---v~iw~l  251 (337)
                      ...+|+|||++|+.++.++   . |.+||+.++... .+...   ......+|+|||+   +|+..+.++.   +.+.+.
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~---~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGR---MILYATTRGGRGVLGLVST  396 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCC---EEEEEEeCCCcEEEEEEEC
Confidence            7889999999999988775   4 578998876542 23221   1234568999999   7877777653   445443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.03  E-value=7.9e-09  Score=88.24  Aligned_cols=152  Identities=9%  Similarity=0.052  Sum_probs=110.2

Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc---cc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-C
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-A  207 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~  207 (337)
                      .+.+.++++|+..+|.+-  ...+|.||......   ..     |...|+.|+|+|..+.|++++.|... +||...+ +
T Consensus        12 pitchAwn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna-yVw~~~~~~   88 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA-YVWTQPSGG   88 (361)
T ss_pred             ceeeeeecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-cccccCCCC
Confidence            467788889999999876  47899999887655   22     34889999999999999999999885 7999844 4


Q ss_pred             ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc-----ceeecccc
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES-----VNEVLDPA  282 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~w~~~  282 (337)
                      +-..++..-......++|.|+|.++   .+|+||.-..|.||-++.+.+        .++.+.+.+.     ....|.+ 
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENd--------WWVsKhikkPirStv~sldWhp-  156 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKEN---KFAVGSGARLISVCYYEQEND--------WWVSKHIKKPIRSTVTSLDWHP-  156 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCc---eEEeccCccEEEEEEEecccc--------eehhhhhCCccccceeeeeccC-
Confidence            3222211111234578999999998   999999999999999876653        2233322221     2234444 


Q ss_pred             cceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          283 DHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       283 ~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                                   .+-.|.+|+.||+.++|....
T Consensus       157 -------------nnVLlaaGs~D~k~rVfSayI  177 (361)
T KOG1523|consen  157 -------------NNVLLAAGSTDGKCRVFSAYI  177 (361)
T ss_pred             -------------CcceecccccCcceeEEEEee
Confidence                         446788999999999998743

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=6.4e-07  Score=92.29  Aligned_cols=231  Identities=13%  Similarity=0.073  Sum_probs=138.0

Q ss_pred             EEEEEcCC-CCEEEEEcCC-ceEEEeCCCCcEEEEEee-C---------------CEEEEEEccCCCEEEEEeCCCCCCC
Q 019672           11 FFVSFNQD-NSGFALSTKD-GFKIFDSSTGRLCYERAV-G---------------AFSIVEMLYSSSLLAIVGAGEQPSL   72 (337)
Q Consensus        11 ~~~~fs~d-g~~la~g~~~-g~~vw~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~g~~~~~   72 (337)
                      ..++++++ |..+++-+.+ .+++||.+.. .+..... +               .-..+.+..+.+.+.++..      
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------  643 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------  643 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence            35788875 4455554444 4789997644 3322211 0               0112233333444444333      


Q ss_pred             CCceEEEEECCCCCEEEEEEcC------------------CceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeec
Q 019672           73 SPRRLCLFNTTTGTALRELNFL------------------TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTID  130 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~------------------~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~  130 (337)
                      ..+.|+.+|+.++. +.++...                  ....++++++  ..++++.  ++.|++||..++... .+.
T Consensus       644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence            35789999987764 3333110                  1235678876  3455554  578999998776432 111


Q ss_pred             CCC-------------CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------------------------
Q 019672          131 TVP-------------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------------------------  173 (337)
Q Consensus       131 ~~~-------------~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------------------------  173 (337)
                      ...             .......++.++++..|.++.. .++.|++||+.++....                        
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            100             0011223555666665555554 57899999987643110                        


Q ss_pred             --cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-----------cceeEEEEEeecCCCcccEEEEE
Q 019672          174 --EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       174 --~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~l~fs~dg~~~~~las~  240 (337)
                        -.....++++++|+.+++-+.+++ |++||..++........+.           .-.....|+++++|+   ++++-
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaD  876 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVAD  876 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEE
Confidence              012468999999998888877776 7999998876543221110           011367899999999   89999


Q ss_pred             eCCCcEEEEecCCCc
Q 019672          241 SSSGSLHVFSPGFAI  255 (337)
Q Consensus       241 s~dg~v~iw~l~~~~  255 (337)
                      +.+++|++||+.+..
T Consensus       877 t~Nn~Irvid~~~~~  891 (1057)
T PLN02919        877 TNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCCEEEEEECCCCc
Confidence            999999999997754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=7e-08  Score=90.91  Aligned_cols=213  Identities=10%  Similarity=0.046  Sum_probs=124.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-Cc---eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~-~g---~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ...++.+..|+|||+.|+..+. ++   +.+||+.+++...-.. .+......+.++++.++++....    ....|.+|
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~  291 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----GQPEIYVV  291 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----CCeEEEEE
Confidence            3456788999999999886543 32   5788988876432211 12223356777888887765420    12358888


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      |+.+++...............|++++  +++..  +  ..|+++|+.+++... +.....  .....+++|++.++++.+
T Consensus       292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~--~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE--QNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC--CCcCeeECCCCCEEEEEE
Confidence            99887654333333345567787764  44444  2  268888887775433 211111  112234566777887765


Q ss_pred             CCCcc--EEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC-c-EEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKG--SVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg--~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg-~-~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      . .++  .|.++|+.++....  . .......|+|||+.|+..+.++ . .+.+++. +|.....+..+  ...+...+|
T Consensus       369 ~-~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~~~p~W  444 (448)
T PRK04792        369 R-TNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEVKSPAW  444 (448)
T ss_pred             e-cCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCcCCCcc
Confidence            3 244  45567877664321  1 1223457999999988776543 2 2566776 56555555322  234666788


Q ss_pred             ec
Q 019672          228 GQ  229 (337)
Q Consensus       228 s~  229 (337)
                      ||
T Consensus       445 sp  446 (448)
T PRK04792        445 SP  446 (448)
T ss_pred             CC
Confidence            76

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=1.5e-07  Score=88.37  Aligned_cols=214  Identities=14%  Similarity=0.062  Sum_probs=125.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-c---eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKD-G---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~-g---~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+..++.+.+|+|||+.|+..+.. +   +.+||+++++...-.. .+......+.++++.+++....    ..+..|.+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~----~g~~~Iy~  271 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSK----DGNPEIYV  271 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEcc----CCCceEEE
Confidence            345678899999999998765432 2   5788998885432211 1222335677777777765532    01347899


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCC--eEEEEEC----CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKK--RLVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      ||+.+++...-...........|+++  .++...+    ..|+++|+.+++... +.....  ......++|++..+++.
T Consensus       272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~--~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGN--YNARPRLSADGKTLVMV  348 (430)
T ss_pred             EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC--CccceEECCCCCEEEEE
Confidence            99998875432223334455677765  4555442    268888987775432 221111  11223455677788776


Q ss_pred             CCCCcc--EEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          154 ASTTKG--SVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       154 ~~~~dg--~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      .. .++  .|.++|+.++....  . .......|+|||+.|+.++.++  ..+.++++. |.....+..  ....+...+
T Consensus       349 ~~-~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~p~  424 (430)
T PRK00178        349 HR-QDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVREPS  424 (430)
T ss_pred             Ec-cCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCCCc
Confidence            53 233  57888988764321  1 2233568999999998877653  224566774 443334432  223456667


Q ss_pred             eec
Q 019672          227 FGQ  229 (337)
Q Consensus       227 fs~  229 (337)
                      |||
T Consensus       425 ws~  427 (430)
T PRK00178        425 WSP  427 (430)
T ss_pred             cCC
Confidence            776

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.99  E-value=1.9e-06  Score=77.59  Aligned_cols=250  Identities=11%  Similarity=0.067  Sum_probs=142.8

Q ss_pred             CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCC-CC--CCCCCceEEEEECCCCCEEEEEEcCCce-------
Q 019672           28 DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAG-EQ--PSLSPRRLCLFNTTTGTALRELNFLTSI-------   97 (337)
Q Consensus        28 ~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~d~~v~iwd~~~~~~~~~~~~~~~v-------   97 (337)
                      +.+.|.|.++++.+-....+......+.++...+.++... .+  .+-.+..|.+||..+.+.+.++..+...       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            4578999999988776654332222367777766655540 00  0114789999999999999998865432       


Q ss_pred             -eEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC-C-
Q 019672           98 -LAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME-L-  169 (337)
Q Consensus        98 -~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~-~-  169 (337)
                       ..+.++++  .++++.   ++.+.+.|+.+++.+.++..+. +..++.  .+++..+ +.+.   ||......+.+ + 
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~--t~e~~~~-~~~~---Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP--TANDTFF-MHCR---DGSLAKVGYGTKGN  179 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE--ecCCccE-EEee---cCceEEEEecCCCc
Confidence             25566655  456555   6799999999999999998743 222322  2122222 2221   23332221111 0 


Q ss_pred             ------c-------ccccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCC-----CceeEeeccC-----CcceeEEEE
Q 019672          170 ------H-------SHCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-----ATKSYSFRRG-----TYPSTIFSL  225 (337)
Q Consensus       170 ------~-------~~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~-----~~~~~~~~~~-----~~~~~i~~l  225 (337)
                            .       .+...|    .|.+ ||+++....+ |+ |.+.|+..     .+.+..+..+     -.+..+.-+
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence                  0       011123    4455 8888877776 87 58999533     3333222111     112224449


Q ss_pred             EeecCCCcccEEEEEeC----------CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672          226 SFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  295 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  295 (337)
                      +++||++   .|.+...          .+.|.++|+++.+...+           ++- -...|..          ...+
T Consensus       254 a~~~dg~---~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-----------i~v-G~~~~~i----------avS~  308 (352)
T TIGR02658       254 AYHRARD---RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-----------IEL-GHEIDSI----------NVSQ  308 (352)
T ss_pred             EEcCCCC---EEEEEecCCccccccCCCCEEEEEECCCCeEEEE-----------EeC-CCceeeE----------EECC
Confidence            9999998   7776432          14688888876654221           000 0113333          2356


Q ss_pred             ccC-EEEEEE-eCCcEEEEEEe
Q 019672          296 KRA-SVSVIT-YNGYFVEYIFS  315 (337)
Q Consensus       296 ~~~-~l~~~~-~dg~~~~~~~~  315 (337)
                      +++ .|++.+ .+|.+.+++..
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECc
Confidence            667 777777 57888877653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=1.1e-06  Score=82.58  Aligned_cols=171  Identities=14%  Similarity=0.027  Sum_probs=105.6

Q ss_pred             eEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           76 RLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .|.++|...+....-......+....|+|++  ++...  +  ..|.+||+.+++... +.....  ...+..++|++..
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g--~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEG--LNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCC--CcCCeEECCCCCE
Confidence            6888888765544334555678888898765  43333  2  369999998875433 221111  1224566777777


Q ss_pred             EEEcCC-CCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcceeE
Q 019672          150 LAVPAS-TTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       150 la~~~~-~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      +++... .....|.+||+.++....    ........|+|||+.|+..+.. |. .|.++|+.+++.. .+....  ...
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~--~~~  333 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVG--NYN  333 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC--CCc
Confidence            775432 123368888998765321    1345678899999988877653 32 2567788777643 222111  112


Q ss_pred             EEEEeecCCCcccEEEEEeCC-C--cEEEEecCCCc
Q 019672          223 FSLSFGQSMQFQDILVATSSS-G--SLHVFSPGFAI  255 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~d-g--~v~iw~l~~~~  255 (337)
                      ...+|||||+   +|+..+.+ +  .|.++|+.++.
T Consensus       334 ~~~~~Spdg~---~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        334 ARPRLSADGK---TLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             cceEECCCCC---EEEEEEccCCceEEEEEECCCCC
Confidence            3568999999   78777654 3  47788887654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.95  E-value=8.2e-07  Score=76.25  Aligned_cols=207  Identities=17%  Similarity=0.177  Sum_probs=129.7

Q ss_pred             ceEEEeCCCCcEEEEEeeC---CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeE-EEEcC
Q 019672           29 GFKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLNK  104 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~~  104 (337)
                      .+..||..+|+.+......   ...........+.+.+.+.       ++.|..||..+|+.+.+...+.++.. .....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~   76 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPGPISGAPVVDG   76 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence            3588898888888776531   1112112223444444433       79999999999999998887665332 35567


Q ss_pred             CeEEEEE-CCeEEEEECCCCeeeeee-cCCCCCc---eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----
Q 019672          105 KRLVIVL-REKTYIYDANTLAILDTI-DTVPNLK---GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----  174 (337)
Q Consensus       105 ~~~~v~~-d~~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----  174 (337)
                      +.++++. ++.++.+|..+++.+..+ .......   ........  +..++++.  .++.|..+|+.+++.+-+     
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT--SSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE--TCSEEEEEETTTTEEEEEEESST
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe--ccCcEEEEecCCCcEEEEeecCC
Confidence            7777777 789999999999998874 3321111   11222222  22444443  268899999998876422     


Q ss_pred             ----Cc------eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          175 ----AP------LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       175 ----~~------i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                          .+      +..-.+..++ .+..++.+|.++.+ |+.+++.+.+..  . . .+.. ...+++.   .|..++.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~-~-~~~~-~~~~~~~---~l~~~~~~~  222 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I-S-GIYS-LPSVDGG---TLYVTSSDG  222 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S-S--ECE-CEECCCT---EEEEEETTT
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C-C-CccC-CceeeCC---EEEEEeCCC
Confidence                11      1222333345 67777778866666 999999765332  1 1 1222 1346666   788888999


Q ss_pred             cEEEEecCCCcc
Q 019672          245 SLHVFSPGFAIN  256 (337)
Q Consensus       245 ~v~iw~l~~~~~  256 (337)
                      .|..||+++++.
T Consensus       223 ~l~~~d~~tG~~  234 (238)
T PF13360_consen  223 RLYALDLKTGKV  234 (238)
T ss_dssp             EEEEEETTTTEE
T ss_pred             EEEEEECCCCCE
Confidence            999999988753

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.90  E-value=2.4e-08  Score=101.80  Aligned_cols=162  Identities=12%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             CCceEEEEECCCCCEEEEEEcC--CceeEEEEcCCe--EEEE-ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           73 SPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKR--LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~--~~v~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      .|+.|++|....++.+..+...  ..|..+.|+.++  +.++ +||.+.+|... .++....+-+  ..+...+.+-+  
T Consensus      2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch--nk~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH--NKALSDFRFIG-- 2302 (2439)
T ss_pred             CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccC--Cccccceeeee--
Confidence            5999999999999988876543  467777776543  3333 39999999987 3444333332  23344444432  


Q ss_pred             cEEEEcCCC-CccEEEEEEccCCc---cc---ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          148 CFLAVPAST-TKGSVLVYNVMELH---SH---CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       148 ~~la~~~~~-~dg~v~i~d~~~~~---~~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ..++++|.. .++.+.+||..-..   .+   |.+.++++++-|.-++|++|+.+|. ++|||++..++++++..     
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqrql~h~~~~----- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQRQLRHTFQA----- 2376 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHHHHHHHhhh-----
Confidence            356666532 46789999965322   23   3488999999999999999999998 69999998887666531     


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                            +. ...   ++++|+..|.|+||++....
T Consensus      2377 ------~~-~~~---~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 ------LD-TRE---YFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             ------hh-hhh---eeeccCcccceEEEEccccc
Confidence                  33 233   89999999999999998764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=8.4e-07  Score=81.28  Aligned_cols=229  Identities=12%  Similarity=0.163  Sum_probs=141.2

Q ss_pred             EEEEEcCCCCEEEEEcCCceEEEeCCCCcEE-EEEeeCCEEEEEEccC--CCEEEEEeCCCCCCCCCceEEEEECCCC--
Q 019672           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLC-YERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLCLFNTTTG--   85 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~v~iwd~~~~--   85 (337)
                      ++.+|++|.++.|=-..+.+.+|++.+.+.. ..++..++....+.+.  ...+++-.-+.  +.....|+||.....  
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~--kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK--KGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC--CCCCcEEEEeccccccc
Confidence            6889999988765445567899998876543 3334455555555544  23444432211  125789999987522  


Q ss_pred             -CEEEEEE-cCCceeEEEEcCC--eEEE-EE---C---------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           86 -TALRELN-FLTSILAVRLNKK--RLVI-VL---R---------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        86 -~~~~~~~-~~~~v~~i~~~~~--~~~v-~~---d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                       +.+..-. +...-..+.|++.  .+++ +.   |         .+++++++........+.. .+|  +.++.+++.+.
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GP--Vhdv~W~~s~~  283 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGP--VHDVTWSPSGR  283 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCC--ceEEEECCCCC
Confidence             1221111 2223344666643  2332 22   3         3688888874444434331 223  44555555553


Q ss_pred             EEE-EcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          149 FLA-VPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       149 ~la-~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      -++ +-|. .--.+.|||++-.-.  ..+++=+++-|+|.|++|+-++-+   |. |.|||+.+.+++..+.-.  .  -
T Consensus       284 EF~VvyGf-MPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~--~--t  357 (566)
T KOG2315|consen  284 EFAVVYGF-MPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA--N--T  357 (566)
T ss_pred             EEEEEEec-ccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC--C--c
Confidence            333 3343 467799999863321  123889999999999999988754   66 589999998888777421  2  2


Q ss_pred             EEEEeecCCCcccEEEEEeCC------CcEEEEecCC
Q 019672          223 FSLSFGQSMQFQDILVATSSS------GSLHVFSPGF  253 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~d------g~v~iw~l~~  253 (337)
                      +-+.|+|||+   +++++...      +.++||+...
T Consensus       358 t~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  358 TVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             eEEEEcCCCc---EEEEEeccccEEecCCeEEEEecC
Confidence            3469999999   88877654      7899999764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.1e-05  Score=70.59  Aligned_cols=236  Identities=13%  Similarity=0.157  Sum_probs=143.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC----ceEEEeCCC--CcEEEEE----eeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            7 SYPVFFVSFNQDNSGFALSTKD----GFKIFDSST--GRLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~----g~~vw~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .+..+.++|+|++++|.++-..    ++..|.++.  |++.+-.    .+.+-..+++..+..++..+.-      .-+.
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g~  112 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSGS  112 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCce
Confidence            4567899999999998876543    466665554  6664322    2344467788777777766553      4688


Q ss_pred             EEEEECCC-CCE---EEEEEcCCc----------eeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeee----ecCCCC
Q 019672           77 LCLFNTTT-GTA---LRELNFLTS----------ILAVRLNKKRLVI--VL--REKTYIYDANTLAILDT----IDTVPN  134 (337)
Q Consensus        77 v~iwd~~~-~~~---~~~~~~~~~----------v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~----~~~~~~  134 (337)
                      |.++-++. |.+   +....+...          +-...++|++..+  +.  -++|.+|++..+++...    +.. ..
T Consensus       113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-G~  191 (346)
T COG2706         113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP-GA  191 (346)
T ss_pred             EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC-CC
Confidence            99988755 332   223333222          5666777766333  22  56999999987754322    221 11


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC--c--cccc-----------CceEEEEeCCCCCEEEEEeCCCcEE
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--H--SHCE-----------APLAAIVLSSNGMYIATASEQGTII  199 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~--~--~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i  199 (337)
                      ...-+.|.++  +++..+..- -+++|.+|.....  +  .++.           ....+|.++|||++|.++..--..|
T Consensus       192 GPRHi~FHpn--~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI  268 (346)
T COG2706         192 GPRHIVFHPN--GKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSI  268 (346)
T ss_pred             CcceEEEcCC--CcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            2233455544  444333332 4899999987763  2  1111           5678899999999988765433345


Q ss_pred             EEEEcCC-CceeEeeccCCcce-eEEEEEeecCCCcccEEEEEeCC-CcEEEEecCCCc
Q 019672          200 RVFLVSE-ATKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGFAI  255 (337)
Q Consensus       200 ~vwd~~~-~~~~~~~~~~~~~~-~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~~~  255 (337)
                      -+|.+.. +.++..+......+ .-....|+|+|+   +|+++..+ ..|.+|.++...
T Consensus       269 ~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         269 AVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEcCCC
Confidence            6776643 22232221111111 246789999999   88877776 469999987543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.89  E-value=2.6e-06  Score=77.30  Aligned_cols=241  Identities=11%  Similarity=0.102  Sum_probs=150.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC--------CCCCCceE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ--------PSLSPRRL   77 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~d~~v   77 (337)
                      ..-++.+++|||.|++|+.....++.+|.-..+..+.......+..+.+.+...++..-+....        |...++.+
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            4557899999999999999999999999988876666655567777777666666654443211        23456789


Q ss_pred             EEEECCCCCEEEEEEcCC-c--ee-EEEEcCCeEEEE--ECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC--ccE
Q 019672           78 CLFNTTTGTALRELNFLT-S--IL-AVRLNKKRLVIV--LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--ACF  149 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~-~--v~-~i~~~~~~~~v~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  149 (337)
                      .+||..+|..+..+.... +  .. -+.|+-+..+++  ..+.++|+++...-....+... .+.++..++.+|.  +..
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l-r~~gi~dFsisP~~n~~~  189 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL-RPVGILDFSISPEGNHDE  189 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc-cccceeeEEecCCCCCce
Confidence            999999999998876543 2  22 244544433333  4789999997221111111111 1345555555443  333


Q ss_pred             EEEcC---CCCccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEe------C-----CCcEEEEEEcCCCcee
Q 019672          150 LAVPA---STTKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATAS------E-----QGTIIRVFLVSEATKS  210 (337)
Q Consensus       150 la~~~---~~~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s------~-----dg~~i~vwd~~~~~~~  210 (337)
                      ||+=.   ....+++++|.+...+.+.+     ..=..+.|++.|++|..--      .     ..+ +.|++++.....
T Consensus       190 la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e~~i~  268 (561)
T COG5354         190 LAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITERSIP  268 (561)
T ss_pred             EEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeecccccc
Confidence            44321   11478899999886554432     2334577888888765321      1     122 467777632221


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEe--CCCcEEEEecCCC
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATS--SSGSLHVFSPGFA  254 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s--~dg~v~iw~l~~~  254 (337)
                      ...   ....+|...+|+|+++   .+++.+  ...++.++|++..
T Consensus       269 V~~---~~~~pVhdf~W~p~S~---~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         269 VEK---DLKDPVHDFTWEPLSS---RFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             eec---cccccceeeeecccCC---ceeEEecccccceeecccccc
Confidence            111   1245799999999988   655554  6778999998764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1e-05  Score=70.82  Aligned_cols=269  Identities=13%  Similarity=0.137  Sum_probs=150.6

Q ss_pred             CCceEEEeCCCC--cEEE---EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC--CCEEE--EEEcC-Cc
Q 019672           27 KDGFKIFDSSTG--RLCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--GTALR--ELNFL-TS   96 (337)
Q Consensus        27 ~~g~~vw~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~--~~~~~--~~~~~-~~   96 (337)
                      .+++.+|++++.  ++..   .........+.+..+.+.+..+-..    -.++.|.-+.+..  |+...  ..... .+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~----~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~   90 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP----GEEGGVAAYRIDPDDGRLTFLNRQTLPGSP   90 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEec----CCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence            567899987743  2211   1123455566776666555444321    0256677666543  54332  22222 23


Q ss_pred             eeEEEEcCCe--EEEEE--CCeEEEEECCC-CeeeeeecC--C----CCCc---e-EEEEeeCCCccEEEEcCCCCccEE
Q 019672           97 ILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDT--V----PNLK---G-LCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        97 v~~i~~~~~~--~~v~~--d~~i~i~d~~~-~~~~~~~~~--~----~~~~---~-~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      -+-+++++++  ++++.  .+.|.++-++. |.+...+..  +    +++.   . .-.....|++.+|+++.-. .-.|
T Consensus        91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri  169 (346)
T COG2706          91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRI  169 (346)
T ss_pred             CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceE
Confidence            3678887765  44444  78999999965 322211111  0    1111   0 2233457889899988753 3469


Q ss_pred             EEEEccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-ceeEeec------cCCc-ceeEEEE
Q 019672          162 LVYNVMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFR------RGTY-PSTIFSL  225 (337)
Q Consensus       162 ~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~------~~~~-~~~i~~l  225 (337)
                      .+|++..++....        ..-+.|+|+|+|+++-..++=...|-+|..... ..+.++.      .... ....-.|
T Consensus       170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI  249 (346)
T COG2706         170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI  249 (346)
T ss_pred             EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence            9999987664321        567899999999988877764334679998763 2222221      1111 1225678


Q ss_pred             EeecCCCcccEEEEE-eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          226 SFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       226 ~fs~dg~~~~~las~-s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      ..+|||+   +|-++ -....|-+|.+......-      .+.......   ..|  .+      .+.+.+.++.|++..
T Consensus       250 his~dGr---FLYasNRg~dsI~~f~V~~~~g~L------~~~~~~~te---g~~--PR------~F~i~~~g~~Liaa~  309 (346)
T COG2706         250 HISPDGR---FLYASNRGHDSIAVFSVDPDGGKL------ELVGITPTE---GQF--PR------DFNINPSGRFLIAAN  309 (346)
T ss_pred             EECCCCC---EEEEecCCCCeEEEEEEcCCCCEE------EEEEEeccC---CcC--Cc------cceeCCCCCEEEEEc
Confidence            8999999   55543 223478899886543210      111100000   000  01      112244557788777


Q ss_pred             e-CCcEEEEEEecCCCC
Q 019672          305 Y-NGYFVEYIFSINNCC  320 (337)
Q Consensus       305 ~-dg~~~~~~~~~~~~~  320 (337)
                      . ...+.+|..+.+++.
T Consensus       310 q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         310 QKSDNITVFERDKETGR  326 (346)
T ss_pred             cCCCcEEEEEEcCCCce
Confidence            6 567899999988876

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=2.2e-06  Score=80.77  Aligned_cols=208  Identities=14%  Similarity=0.022  Sum_probs=119.1

Q ss_pred             eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--
Q 019672           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (337)
Q Consensus        30 ~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (337)
                      +.++|.+..... .......+....+.++++.+++++...    ....|.+||+.+++...............|++++  
T Consensus       200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCE
Confidence            345576554322 222223344557778888888876420    1347999999988754433334444567787764  


Q ss_pred             EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc--cEEEEEEccCCcccc---c-Cc
Q 019672          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK--GSVLVYNVMELHSHC---E-AP  176 (337)
Q Consensus       107 ~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d--g~v~i~d~~~~~~~~---~-~~  176 (337)
                      ++++.  ++  .|+++|+.+++.. .+.....  .....+++|++..+++.+. .+  ..|.++|+.+++...   . ..
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~-~~g~~~Iy~~dl~~g~~~~Lt~~g~~  351 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSE-RGGKPQIYRVNLASGKVSRLTFEGEQ  351 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEEEecCCCC
Confidence            44433  44  5888899877543 3322211  2233455677777776553 23  346666776654321   1 22


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcE--EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-Cc--EEEEec
Q 019672          177 LAAIVLSSNGMYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSP  251 (337)
Q Consensus       177 i~~~~~s~dg~~lat~s~dg~~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~--v~iw~l  251 (337)
                      ....+|+|||++|+..+.++..  |.++|+.+++.. .+....   ......|+|||+   +|+..+.+ +.  +.++++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~---~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGT---MVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence            3457899999999887664322  345788777642 332221   112347999999   66665544 43  666665


Q ss_pred             C
Q 019672          252 G  252 (337)
Q Consensus       252 ~  252 (337)
                      +
T Consensus       425 ~  425 (448)
T PRK04792        425 D  425 (448)
T ss_pred             C
Confidence            4

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.84  E-value=3.6e-08  Score=100.57  Aligned_cols=190  Identities=14%  Similarity=0.192  Sum_probs=132.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-CCEEE--EEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSI--VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .|.++.=+|-..+.++|+.+|. ++|....++.+..... +...+  +.+.+.++...++.+       ||.+.+|... 
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~-------dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG-------DGDLSLWQAS- 2281 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeecc-------CCceeecccC-
Confidence            4666666788888888888885 9999888887776543 33222  334556676666655       8999999987 


Q ss_pred             CCEEEEEEcCC-ceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           85 GTALRELNFLT-SILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        85 ~~~~~~~~~~~-~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      .++......+. ...++.|-...++.++    ++.+.+||.--.-...-+. ..+..+..++...|..++++++|.  +|
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr--~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGR--KG 2358 (2439)
T ss_pred             CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCC--cC
Confidence            45555554443 4455555444444444    4589999974322111122 134456777777788889999884  89


Q ss_pred             EEEEEEccCCcccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          160 SVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      .|.+||++..+..|+-+.    ++ ...++++|+..|. |+||++....+++.+..
T Consensus      2359 ~v~l~D~rqrql~h~~~~----~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA----LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh----hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence            999999998888777444    44 5569999999998 79999998888887753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=1.2e-06  Score=81.27  Aligned_cols=255  Identities=11%  Similarity=0.074  Sum_probs=143.8

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      +..+.+++.++ +..+|.++|+++......+..........+. +++..      .++.|..+|.++|+.+-+.....+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~-v~v~~------~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGL-VLVHT------SNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCE-EEEEC------CCCEEEEEEccCCCEeeeecCCCCc
Confidence            34566666655 6889999999887665433211111111233 34443      3789999999999988777643221


Q ss_pred             e------EEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC--ce---EEEEeeCC---CccEEEEcCCCCccEEE
Q 019672           98 L------AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--KG---LCAFSPSL---NACFLAVPASTTKGSVL  162 (337)
Q Consensus        98 ~------~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~--~~---~~~~~~~~---~~~~la~~~~~~dg~v~  162 (337)
                      .      .-....+.+++.. ++.+..+|..+++.+.+.......  ..   ...+...|   ++ .+...+  .+|.+.
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~--~~g~l~  269 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALA--YNGNLV  269 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEE--cCCeEE
Confidence            1      1112334555555 788999999998876654321110  00   00000111   22 333344  378899


Q ss_pred             EEEccCCcccccCc---eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          163 VYNVMELHSHCEAP---LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       163 i~d~~~~~~~~~~~---i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      .+|+.+++..-+.+   ...+.  .++..|..++.+|. +..+|..+|+.+.+...... ....+.... ++    +|..
T Consensus       270 ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v~-~g----~l~v  340 (394)
T PRK11138        270 ALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVLY-NG----YLVV  340 (394)
T ss_pred             EEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEEE-CC----EEEE
Confidence            99999887653311   11122  24567777888887 57899999988765432111 111222222 34    6888


Q ss_pred             EeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          240 TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                      ++.+|.|++.|.++++..-+      +  ...+.   .+++.          | -..+++|++++.||.++.+.+
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~------~--~~~~~---~~~s~----------P-~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQ------Q--KVDSS---GFLSE----------P-VVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEE------E--EcCCC---cceeC----------C-EEECCEEEEEeCCceEEEEeC
Confidence            99999999999877643110      0  00000   01110          0 012368999999999988764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.81  E-value=4.4e-06  Score=77.62  Aligned_cols=216  Identities=9%  Similarity=0.068  Sum_probs=127.3

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCE-EE----------EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAF-SI----------VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      +..+.+++.++ +.-+|.++|+++...+.... ..          .......+.+ +++.      .++.+..+|.++|+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v-~v~~------~~g~l~ald~~tG~  141 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKV-YIGS------EKGQVYALNAEDGE  141 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEE-EEEc------CCCEEEEEECCCCC
Confidence            34555555554 58889999998876543220 00          0011112233 3443      47899999999999


Q ss_pred             EEEEEEcCCceeE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCc---eEEEEeeCCCccEEEEcCCCCccEE
Q 019672           87 ALRELNFLTSILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        87 ~~~~~~~~~~v~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      .+-+......+.+ -.+..+.+++.. ++.+..+|..+++.+..........   +..+-... ++ .++.+.  .+|.+
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~--~~g~v  217 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGG--DNGRV  217 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEc--CCCEE
Confidence            8887766554332 223455566555 7899999999999887775431100   00000011 12 333333  37888


Q ss_pred             EEEEccCCcccccCc------------eEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          162 LVYNVMELHSHCEAP------------LAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       162 ~i~d~~~~~~~~~~~------------i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      ..+|..+++...+.+            ...+.-+|  .+..+..++.+|. +.-+|..+|+.+.+...+.    ...+..
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~----~~~~~~  292 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYGS----VNDFAV  292 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCCC----ccCcEE
Confidence            888988877543211            11122233  2456666778887 4789999999877654321    112222


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                        ++.   .+..++.+|.++.+|.++++
T Consensus       293 --~~~---~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        293 --DGG---RIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             --ECC---EEEEEcCCCeEEEEECCCCc
Confidence              344   67788889999999987664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.78  E-value=1.2e-07  Score=85.28  Aligned_cols=244  Identities=10%  Similarity=0.076  Sum_probs=141.3

Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc--CCceeEEEEcC---CeEEE-EE-CCeEEEEECC-CCee
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRLNK---KRLVI-VL-REKTYIYDAN-TLAI  125 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~--~~~v~~i~~~~---~~~~v-~~-d~~i~i~d~~-~~~~  125 (337)
                      +.|....-.+++++     .|.+|.+||+..++....+..  ..+|...+|-|   +.-++ +. |+.+++=.+. ++..
T Consensus       148 V~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  148 VHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             eeecccCceeeccC-----ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            34444444445552     699999999999888776643  23565555533   33333 23 8888887663 3322


Q ss_pred             e--eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc--------cC---ceEEEEeCCCCC-EEEE
Q 019672          126 L--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EA---PLAAIVLSSNGM-YIAT  191 (337)
Q Consensus       126 ~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--------~~---~i~~~~~s~dg~-~lat  191 (337)
                      .  ..+..+.++.-.+++-+..... +.++|  +|+.++-+|++......        ..   ....++.+|-.. ++|+
T Consensus       223 e~t~rl~~h~g~vhklav~p~sp~~-f~S~g--eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  223 ENTKRLAPHEGPVHKLAVEPDSPKP-FLSCG--EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             ecceecccccCccceeeecCCCCCc-ccccc--cccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence            2  2233344444556666544433 34455  59999999988654321        12   578899999655 8999


Q ss_pred             EeCCCcEEEEEEcCCCce------eEeeccCC----cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc--ccCC
Q 019672          192 ASEQGTIIRVFLVSEATK------SYSFRRGT----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI--NQRR  259 (337)
Q Consensus       192 ~s~dg~~i~vwd~~~~~~------~~~~~~~~----~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~--~~~~  259 (337)
                      |+.|- ..|+||.+.-..      +..|...+    .+..|++++|+.++.   -|+++-+|--|++|.-....  ++-+
T Consensus       300 gG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---ElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  300 GGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---ELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             CChhh-hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---ceeeeecccceEEeccccccCCCCCC
Confidence            99986 469999865432      23332221    233599999998887   56666667789999533221  1111


Q ss_pred             CCcccccccc-cccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          260 GGRTSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       260 ~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ......+... +-.+. ..       ..++-.--+||+.+++++|+.=|.|.+|.-.+.
T Consensus       376 ~s~~~~~~k~vYKGHr-N~-------~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHR-NS-------RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             Ccchhhccchhhcccc-cc-------cccceeeeccCccceEEecCccceEEEEecchh
Confidence            0000011111 00000 00       001111124888899999999999999976543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.78  E-value=4.7e-06  Score=75.17  Aligned_cols=201  Identities=15%  Similarity=0.142  Sum_probs=132.4

Q ss_pred             EcCCCCEEEEEcCCceEEEeCCCCcEE-EEEe-----e--C-----CEEEEE-E-ccCCCEEEEEeCCCCCCCCCceEEE
Q 019672           15 FNQDNSGFALSTKDGFKIFDSSTGRLC-YERA-----V--G-----AFSIVE-M-LYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus        15 fs~dg~~la~g~~~g~~vw~~~~~~~~-~~~~-----~--~-----~~~~~~-~-~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .|.||+.++-.....+.+||.++.++. .+..     .  .     +...++ + .-+++.+++++-|        +..|
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------kaFi  345 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------KAFI  345 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--------cEEE
Confidence            467898888776666899998776432 1111     0  0     011111 1 2256888998864        6666


Q ss_pred             EECCCCCEEEEEEcCCceeEEEE--cCCeEEEEE-CC-eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNFLTSILAVRL--NKKRLVIVL-RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~--~~~~~~v~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      .+.-.+ ....+.....|.-..+  .++..+++. |+ .+-|||.++++..+...   +-..+.++..++++..++.+. 
T Consensus       346 ~~~~~~-~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---~lg~I~av~vs~dGK~~vvaN-  420 (668)
T COG4946         346 MRPWDG-YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---DLGNIEAVKVSPDGKKVVVAN-  420 (668)
T ss_pred             ECCCCC-eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC---CccceEEEEEcCCCcEEEEEc-
Confidence            654433 2334444455654443  566777777 55 89999999886544432   234577888888888888776 


Q ss_pred             CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCc---EEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~---~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                       ...++.++|+.++...     ..+-|+.++|||++++||.+=-+|-   .|+++|+.+++........   +.=.+-+|
T Consensus       421 -dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t---a~DfsPaF  496 (668)
T COG4946         421 -DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT---AYDFSPAF  496 (668)
T ss_pred             -CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc---ccccCccc
Confidence             4788999999988643     1277999999999999999877762   3799999887764332221   22245589


Q ss_pred             ecCCC
Q 019672          228 GQSMQ  232 (337)
Q Consensus       228 s~dg~  232 (337)
                      .||++
T Consensus       497 D~d~r  501 (668)
T COG4946         497 DPDGR  501 (668)
T ss_pred             CCCCc
Confidence            99998

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=5.7e-06  Score=77.50  Aligned_cols=218  Identities=12%  Similarity=0.003  Sum_probs=123.4

Q ss_pred             CCCCeEEEEEcCCCCEEE---EEcCCc---eEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            6 SSYPVFFVSFNQDNSGFA---LSTKDG---FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la---~g~~~g---~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ....+.+-+|+|||+.++   ++..++   +.+.++.+++...-. ..+......+.++++.+++++....  ..+-.+.
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~  260 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYG--NPDLFIQ  260 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCC--CcceeEE
Confidence            345667789999997532   444443   466688877532211 1223334567788888888774210  1244556


Q ss_pred             EEECCCC--CEEEEEE-cC-CceeEEEEcCCe--EEEEE--CC--eEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCc
Q 019672           79 LFNTTTG--TALRELN-FL-TSILAVRLNKKR--LVIVL--RE--KTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        79 iwd~~~~--~~~~~~~-~~-~~v~~i~~~~~~--~~v~~--d~--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      +|++..+  .....+. .. .......|+|++  ++...  ++  .|+++++.. +.....+.....  ......++|++
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~--~~~~p~wSPDG  338 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR--NSSCPAWSPDG  338 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC--CccceeECCCC
Confidence            6887653  1222232 22 233567788775  44444  34  455556542 222333322211  23345667788


Q ss_pred             cEEEEcCCC-CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCC-C-cEEEEEEcCCCceeEeeccCCcce
Q 019672          148 CFLAVPAST-TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQ-G-TIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       148 ~~la~~~~~-~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~d-g-~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ..|++.... ....|.+||+.+++...-    ..+....|+|||+.|+..+.+ + ..|.++|+.+++..... .+  ..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~--~g  415 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IG--SG  415 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cC--CC
Confidence            888876531 134799999987754321    356789999999988755432 2 23678899877653322 22  23


Q ss_pred             eEEEEEeecC
Q 019672          221 TIFSLSFGQS  230 (337)
Q Consensus       221 ~i~~l~fs~d  230 (337)
                      .+...+|||-
T Consensus       416 ~~~~p~Ws~~  425 (428)
T PRK01029        416 EKRFPSWGAF  425 (428)
T ss_pred             cccCceecCC
Confidence            3556778774

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.76  E-value=2.7e-07  Score=78.81  Aligned_cols=285  Identities=12%  Similarity=0.124  Sum_probs=148.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-----EEEEEeeCC--------------EEEEEEccCC--CEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-----LCYERAVGA--------------FSIVEMLYSS--SLLAI   63 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-----~~~~~~~~~--------------~~~~~~~~~~--~~~~~   63 (337)
                      ....|+++.|...|.+|++|..+| +.+|.-+...     ...+.+.+.              +.-+++.-+.  +.. +
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF-L  103 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF-L  103 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE-E
Confidence            345699999999999999998877 5777543321     111122111              1122332222  233 3


Q ss_pred             EeCCCCCCCCCceEEEEECCCCCE--EEEE----EcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCC
Q 019672           64 VGAGEQPSLSPRRLCLFNTTTGTA--LREL----NFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVP  133 (337)
Q Consensus        64 ~~~g~~~~~~d~~v~iwd~~~~~~--~~~~----~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~  133 (337)
                      +++      .|++|++|.+.....  +.+-    .++.+..+-..+++.+....    |.-|..+.       ..+....
T Consensus       104 lst------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-------~rvyaNa  170 (460)
T COG5170         104 LST------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-------CRVYANA  170 (460)
T ss_pred             Eec------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc-------ceecccc
Confidence            444      499999999865421  1111    11111110000111111110    11111110       1111122


Q ss_pred             CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------c-----cCceEEEEeCCC-CCEEEEEeCCCcEE
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------C-----EAPLAAIVLSSN-GMYIATASEQGTII  199 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~-----~~~i~~~~~s~d-g~~lat~s~dg~~i  199 (337)
                      ++.-+.+++++.|...+.++.   |-.|.+|++.-...-        +     +.-|++..|+|. ...+...++.|. |
T Consensus       171 H~yhiNSiS~NsD~et~lSaD---dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-I  246 (460)
T COG5170         171 HPYHINSISFNSDKETLLSAD---DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-I  246 (460)
T ss_pred             ceeEeeeeeecCchheeeecc---ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-E
Confidence            344466788888887877764   677888987643211        1     156889999995 456777788898 7


Q ss_pred             EEEEcCCCc------eeEeeccCC--------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc
Q 019672          200 RVFLVSEAT------KSYSFRRGT--------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS  265 (337)
Q Consensus       200 ~vwd~~~~~------~~~~~~~~~--------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~  265 (337)
                      ++-|++...      .+.+.....        -...|..+.|+++|+   ++++-+ --+|+|||+...+.+...   ..
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---yIlsRd-yltvkiwDvnm~k~pikT---i~  319 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---YILSRD-YLTVKIWDVNMAKNPIKT---IP  319 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---EEEEec-cceEEEEecccccCCcee---ec
Confidence            999997322      222111110        012478899999998   777654 468999999887765420   00


Q ss_pred             cccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          266 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       266 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                       +--.+.+....+....-. .-+.-+.+..+.+.+++|+.++.+-+|..++.
T Consensus       320 -~h~~l~~~l~d~YEnDai-fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         320 -MHCDLMDELNDVYENDAI-FDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             -hHHHHHHHHHhhhhccce-eeeEEEEecCCcccccccccccceeeeccccC
Confidence             000000111111111000 00112233456688999999999988885443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.74  E-value=4.9e-06  Score=77.93  Aligned_cols=174  Identities=8%  Similarity=-0.006  Sum_probs=100.7

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEE--EE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVI--VL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v--~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      ...|.+.|...+....-......+..=.|+|+  ++.+  ..  +  ..|++.++.+++.........   ......++|
T Consensus       164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSP  240 (428)
T PRK01029        164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSP  240 (428)
T ss_pred             cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECC
Confidence            34688888765544332223345556678887  3322  22  2  368888998775433322211   223456778


Q ss_pred             CccEEEEcCCC---CccEEEEEEccCC---c--cccc---CceEEEEeCCCCCEEEEEeC-CCcEEEEEE--cCC-Ccee
Q 019672          146 NACFLAVPAST---TKGSVLVYNVMEL---H--SHCE---APLAAIVLSSNGMYIATASE-QGTIIRVFL--VSE-ATKS  210 (337)
Q Consensus       146 ~~~~la~~~~~---~dg~v~i~d~~~~---~--~~~~---~~i~~~~~s~dg~~lat~s~-dg~~i~vwd--~~~-~~~~  210 (337)
                      |+..|++....   .+..+.+|++..+   .  .+..   ......+|||||+.|+..+. +|. .+||.  +.. +...
T Consensus       241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~  319 (428)
T PRK01029        241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSP  319 (428)
T ss_pred             CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccce
Confidence            88888876421   1334455776542   1  1111   23467899999999887764 554 35554  432 2223


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCCcc
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAIN  256 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~~~  256 (337)
                      ..+...  ...+....|||||+   +|+..+.+   ..|.+||+.+++.
T Consensus       320 ~~lt~~--~~~~~~p~wSPDG~---~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        320 RLLTKK--YRNSSCPAWSPDGK---KIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             EEeccC--CCCccceeECCCCC---EEEEEEcCCCCcEEEEEECCCCCe
Confidence            333222  23456789999999   88876554   3589999876643

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=5.9e-06  Score=70.91  Aligned_cols=206  Identities=14%  Similarity=0.113  Sum_probs=123.8

Q ss_pred             CceEEEEECCCCCEEEEEEcCC---ceeE-EEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           74 PRRLCLFNTTTGTALRELNFLT---SILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~---~v~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      +++|..||.++|+.+-+.....   ...+ .....+.++++. ++.++.||..+++.+.++..........  ....+  
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~--   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGG--   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETT--
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eeccc--
Confidence            6799999999999999887632   2222 223677777775 8899999999999988876533222221  22222  


Q ss_pred             EEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  219 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~  219 (337)
                      .+++..  .++.+..+|+.+++...+         ..........++..++.+..+|. |..+|.++|+.+.........
T Consensus        78 ~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   78 RVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             EEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-
T ss_pred             cccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCC
Confidence            233232  267899999888876533         11122223334778888888887 579999999998877543211


Q ss_pred             --eeE-------EEEEeecCCCcccEEEEEeCCCc-EEEEecCCCcccCCCCcccccccccccccceeecccccceeeee
Q 019672          220 --STI-------FSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN  289 (337)
Q Consensus       220 --~~i-------~~l~fs~dg~~~~~las~s~dg~-v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  289 (337)
                        ..+       ..+.+. ++    .+..++.++. +.+ |+++++.                     .|...... .. 
T Consensus       155 ~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~-d~~tg~~---------------------~w~~~~~~-~~-  205 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAV-DLATGEK---------------------LWSKPISG-IY-  205 (238)
T ss_dssp             SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEE-ETTTTEE---------------------EEEECSS--EC-
T ss_pred             CCcceeeecccccceEEE-CC----EEEEEcCCCeEEEE-ECCCCCE---------------------EEEecCCC-cc-
Confidence              111       233333 34    4666676775 555 8877652                     11110000 00 


Q ss_pred             ccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          290 AFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       290 ~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      .. ....++.|++.+.+|.+..|++.+
T Consensus       206 ~~-~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  206 SL-PSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             EC-EECCCTEEEEEETTTEEEEEETTT
T ss_pred             CC-ceeeCCEEEEEeCCCEEEEEECCC
Confidence            00 022347889888999988886643

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=2.7e-06  Score=71.38  Aligned_cols=179  Identities=16%  Similarity=0.057  Sum_probs=117.1

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEE------cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRL------NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~------~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      +.+.+.+|...+++-... .....+.++.+      +.-.+.++. |.++++.++..+..-..+..+ + ..+...+.++
T Consensus        92 ~~g~fd~~~~~tn~~h~~-~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~-~-~~~ns~~~sn  168 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLY-QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ-N-LTQNSLHYSN  168 (344)
T ss_pred             ccceeeeecccCccccee-eecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc-c-cceeeeEEcC
Confidence            578999999987653322 12222222222      233455555 778888887544222222211 1 2244556667


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE---eec
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY---SFR  214 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~---~~~  214 (337)
                      ++.++++.|  ....|..|.+......+.        ..=.+..|+.....+|+++.||++ .|||++......   .-.
T Consensus       169 d~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~-~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  169 DPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC-AIYDVRNMATPMAEISST  245 (344)
T ss_pred             CCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE-EEEEecccccchhhhccc
Confidence            788999888  467899998765433221        345678899999999999999985 899998754332   223


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      +.++.+.+..+.||+-|. .++|.-.-.-+.+||-|+++..+..
T Consensus       246 rp~hnGa~R~c~Fsl~g~-lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGL-LDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             CCCCCCceEEEEecCCCc-ceEEEEecCcceEEEEEcccCceee
Confidence            455677899999998765 3466666666889999999877644

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.72  E-value=4.9e-06  Score=76.78  Aligned_cols=178  Identities=19%  Similarity=0.238  Sum_probs=120.7

Q ss_pred             cCCCCEEEEEcCCce-EEEeCCCCcEEEEEee-----CCEEEEEE----cc----------------CCCEEEEEeCCCC
Q 019672           16 NQDNSGFALSTKDGF-KIFDSSTGRLCYERAV-----GAFSIVEM----LY----------------SSSLLAIVGAGEQ   69 (337)
Q Consensus        16 s~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~-----~~~~~~~~----~~----------------~~~~~~~~~~g~~   69 (337)
                      .|-+.+||..+.+|. ++|++.++++..+...     +......+    .+                +...+++ |.   
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl-gt---   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL-GT---   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe-ec---
Confidence            345678888888875 9999999877554321     11111111    00                1112233 32   


Q ss_pred             CCCCCceEEEEECCCCCEEEEEE---cCCceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           70 PSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        70 ~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                         ..+.|-+++...|+....+.   +.++|.++.++.+--.+  +. |.++..|+....+.++.....  +..+..+++
T Consensus        78 ---~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~~~sl~i  152 (541)
T KOG4547|consen   78 ---PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPLVSSLCI  152 (541)
T ss_pred             ---CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCccceEEE
Confidence               47899999999999887776   44578888776553333  22 779999999998887777543  234556677


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCC-----CCEEEEEeCCCcEEEEEEcCC
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~d-----g~~lat~s~dg~~i~vwd~~~  206 (337)
                      .||+..+++++    ++|++||+.+.+.+.     .++|++++|--+     |.++.++..-.+.|.+|-+..
T Consensus       153 s~D~~~l~~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  153 SPDGKILLTAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cCCCCEEEecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            78888998876    689999999988753     389999999877     777776654444466887654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.69  E-value=1.3e-06  Score=75.77  Aligned_cols=154  Identities=14%  Similarity=0.277  Sum_probs=96.4

Q ss_pred             CceeEEEEcCCeEEEEE--CCeEEEEECCCCe-eeeeecCCC-CC----ceEEEEeeCCCcc-EEEEcCCCCccEEEEEE
Q 019672           95 TSILAVRLNKKRLVIVL--REKTYIYDANTLA-ILDTIDTVP-NL----KGLCAFSPSLNAC-FLAVPASTTKGSVLVYN  165 (337)
Q Consensus        95 ~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~-~~~~~~~~~-~~----~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d  165 (337)
                      -.|.+|+++.++-...+  |=+|-+|++.--. ....+...+ +.    .-+.+-.++|..+ ++++++  ..|+|++.|
T Consensus       165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcD  242 (433)
T KOG1354|consen  165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCD  242 (433)
T ss_pred             eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEee
Confidence            36888999877644433  4489999985432 222222111 11    1123334445433 455555  489999999


Q ss_pred             ccCCcc------cc---c------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCc-----
Q 019672          166 VMELHS------HC---E------------APLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTY-----  218 (337)
Q Consensus       166 ~~~~~~------~~---~------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~-----  218 (337)
                      ++....      +.   .            ..|..+.|+++|+++++-..- + ++|||+. ..+.+.++..+..     
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHH
Confidence            984321      00   0            678999999999999986543 4 6999994 4444443321100     


Q ss_pred             -----cee---EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          219 -----PST---IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       219 -----~~~---i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                           ...   -..++||-++.   ++++||-.+..++|++..+.
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~---~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDS---YVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcc---eEecccccceEEEecCCCCc
Confidence                 011   24579999998   99999999999999976543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.62  E-value=2.4e-05  Score=70.72  Aligned_cols=117  Identities=17%  Similarity=0.226  Sum_probs=85.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc--eEEEeCCCCcE-EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG--FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g--~~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +++..|....+.-+++-++.|..+|  +-|||.++++. ......+.+..+....++..+++. .      ....+.+.|
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-N------dr~el~vid  429 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-N------DRFELWVID  429 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-c------CceEEEEEE
Confidence            5677899999999999999999887  58999999974 555566777777777776665543 2      245666778


Q ss_pred             CCCCCEEEE-EEcCCceeEEEEcCCeEEEEE-------CCeEEEEECCCCeeeee
Q 019672           82 TTTGTALRE-LNFLTSILAVRLNKKRLVIVL-------REKTYIYDANTLAILDT  128 (337)
Q Consensus        82 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~  128 (337)
                      +.+|....- -+-..-|+.+.|+++.-.++-       ...|++||+.+++....
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            888875332 122346899999998776664       34899999988776543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.62  E-value=1.3e-06  Score=77.03  Aligned_cols=95  Identities=17%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          158 KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       158 dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      ...+.+|....+...    |.+.+..|+++||+++|+|+..|+. |||-.....-.+..|..|| ..-|..++.-++.  
T Consensus       131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclGH-~eFVS~isl~~~~--  206 (390)
T KOG3914|consen  131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLGH-KEFVSTISLTDNY--  206 (390)
T ss_pred             ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhcccc-HhheeeeeeccCc--
Confidence            455556655444322    4488999999999999999999997 7998777766777777664 5568888887664  


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccC
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                        .|++||.|++|++||+.+++...
T Consensus       207 --~LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  207 --LLLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             --eeeecCCCCcEEEEecccCCccc
Confidence              69999999999999999988754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.62  E-value=1.1e-05  Score=67.96  Aligned_cols=204  Identities=13%  Similarity=0.097  Sum_probs=117.1

Q ss_pred             CEEEEEcCCc-eEEEeCCCCcEEEE-E--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-
Q 019672           20 SGFALSTKDG-FKIFDSSTGRLCYE-R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-   94 (337)
Q Consensus        20 ~~la~g~~~g-~~vw~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-   94 (337)
                      .+||+|+.-| +.+|.+.+.+.... .  ...++.++.---+...-++.+.      .|.++++.+++-+..-.....+ 
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s------ndht~k~~~~~~~s~~~~~h~~~  158 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS------NDHTGKTMVVSGDSNKFAVHNQN  158 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc------CCcceeEEEEecCcccceeeccc
Confidence            4678886655 79999887653221 1  1233333221112222233333      4888888887654433222222 


Q ss_pred             CceeEEEEcCCe--EEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLNKKR--LVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      -.+..+.++++.  +.+++ ...|..|.+... +.+..+...+....-.+.+++.....+|++.  +||++.|||++...
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~--Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF--QDGTCAIYDVRNMA  236 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe--cCCcEEEEEecccc
Confidence            135566666554  33444 458999988653 2222222222333345567777777888887  69999999998654


Q ss_pred             cc----------ccCceEEEEeCCCCC--EEEEEeCCCcEEEEEEcCCCceeEeeccCC------cceeEEEEEeecCCC
Q 019672          171 SH----------CEAPLAAIVLSSNGM--YIATASEQGTIIRVFLVSEATKSYSFRRGT------YPSTIFSLSFGQSMQ  232 (337)
Q Consensus       171 ~~----------~~~~i~~~~~s~dg~--~lat~s~dg~~i~vwd~~~~~~~~~~~~~~------~~~~i~~l~fs~dg~  232 (337)
                      ..          |.+.+..+.|+|-|.  +|.- ++--..+.|-|++++...+.+....      ....|..-.|+.++.
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE  315 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence            32          348999999998655  2333 3332336899999987655442211      112367777777766

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.4e-07  Score=84.75  Aligned_cols=171  Identities=16%  Similarity=0.218  Sum_probs=115.0

Q ss_pred             CCCceEEEEECCCC-------CEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC--C-ceEE
Q 019672           72 LSPRRLCLFNTTTG-------TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN--L-KGLC  139 (337)
Q Consensus        72 ~~d~~v~iwd~~~~-------~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--~-~~~~  139 (337)
                      +.|++|++|.++..       .+..++. |..+|.++.|-.+...+++ |+-|++||---++++.++...+.  . ..+.
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ik  833 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIK  833 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeE
Confidence            36999999997632       2333443 3458888888666544544 99999999876766665532221  1 2222


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      ++ ++-+...+. ++.....+|+++|.+.....++          +.+.++++.|.|+++|.|=..|. |-+.|.++|+.
T Consensus       834 cl-~nv~~~ili-AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc-i~~LDaR~G~v  910 (1034)
T KOG4190|consen  834 CL-ENVDRHILI-AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC-IAILDARNGKV  910 (1034)
T ss_pred             ec-ccCcchhee-eeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc-EEEEecCCCce
Confidence            33 222333333 3322578999999988764432          55899999999999999999997 57999999999


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEE-Eec
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV-FSP  251 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~i-w~l  251 (337)
                      +..++. . .+....++- |..+   .|+....|.++.| |--
T Consensus       911 INswrp-m-ecdllqlaa-psdq---~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  911 INSWRP-M-ECDLLQLAA-PSDQ---ALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             eccCCc-c-cchhhhhcC-chhH---HHHhhcccceeEeeehh
Confidence            887753 2 233334443 5666   7888888888888 854

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.60  E-value=6.3e-05  Score=77.87  Aligned_cols=176  Identities=15%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             CCceEEEEECCCCCEEEEEEcC---------------CceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCC-
Q 019672           73 SPRRLCLFNTTTGTALRELNFL---------------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTV-  132 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~---------------~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~-  132 (337)
                      ..++|++||.. ++.+..+...               ....+|+++++  .++++.  .+.|+++|+.++.. .++... 
T Consensus       588 ~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G  665 (1057)
T PLN02919        588 NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNG  665 (1057)
T ss_pred             CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccC
Confidence            47899999975 4444433221               12466777653  456655  46799999877543 232110 


Q ss_pred             -------CC-------CceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCcccc-------------------cCceE
Q 019672          133 -------PN-------LKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSHC-------------------EAPLA  178 (337)
Q Consensus       133 -------~~-------~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~~-------------------~~~i~  178 (337)
                             ..       ...-..++.++ ++.++++..  .++.|++||..++....                   -...+
T Consensus       666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~  743 (1057)
T PLN02919        666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS  743 (1057)
T ss_pred             cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc
Confidence                   00       00012334455 333333333  47889999986653210                   03456


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee-----------ccCCc--------ceeEEEEEeecCCCcccEEEE
Q 019672          179 AIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-----------RRGTY--------PSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       179 ~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~-----------~~~~~--------~~~i~~l~fs~dg~~~~~las  239 (337)
                      .|+++|+|+.|..+..+...|++||+.++......           ..+..        -.....++|+++|.   ++++
T Consensus       744 GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---LYVA  820 (1057)
T PLN02919        744 GISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---IYVA  820 (1057)
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---EEEE
Confidence            79999999855555444334799999876532110           00000        01135889999998   8999


Q ss_pred             EeCCCcEEEEecCCCc
Q 019672          240 TSSSGSLHVFSPGFAI  255 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~  255 (337)
                      -+.+++|++||.++..
T Consensus       821 Ds~N~rIrviD~~tg~  836 (1057)
T PLN02919        821 DSYNHKIKKLDPATKR  836 (1057)
T ss_pred             ECCCCEEEEEECCCCe
Confidence            9999999999987643

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.58  E-value=9.4e-05  Score=75.35  Aligned_cols=270  Identities=15%  Similarity=0.148  Sum_probs=156.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEE----eCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIF----DSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ....|.++.+-+|...+.++..+| +.+.    +.++.+.-. ..-..++...+++++...++++++       +++|.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-------~~~l~~  146 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-------EGNLLL  146 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-------CCEEEE
Confidence            456799999999999888888887 4566    444443322 222367888888888999999987       677777


Q ss_pred             EECCCCCEEEEEEcCC------ceeEEEEcCCeE-EEEECCeEEEEECCCCeee----eeecCCCCCceEEEEeeCCCcc
Q 019672           80 FNTTTGTALRELNFLT------SILAVRLNKKRL-VIVLREKTYIYDANTLAIL----DTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~------~v~~i~~~~~~~-~v~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      -+ ++-.++.+.....      .-..+-|-.+.- +=+..++----.++.....    ..+.   ...+...+++-+|+.
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s---~dd~~~~ISWRGDG~  222 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS---WDDGRVRISWRGDGE  222 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc---cCCCceEEEECCCCc
Confidence            64 4455555544321      112222211100 0000010000000111000    0111   122456778889999


Q ss_pred             EEEEcCC--CC--ccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeC--CCcEEEEEEcCCCceeEeeccC-
Q 019672          149 FLAVPAS--TT--KGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRG-  216 (337)
Q Consensus       149 ~la~~~~--~~--dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~--dg~~i~vwd~~~~~~~~~~~~~-  216 (337)
                      ++|+...  ..  -..++||+-. +.....     +--.+++|-|.|++||+.-.  +...|-+|. ++|..-.+|... 
T Consensus       223 yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~  300 (928)
T PF04762_consen  223 YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRF  300 (928)
T ss_pred             EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCC
Confidence            9997753  11  2578999865 332221     33457899999999998875  122244565 455544444322 


Q ss_pred             -CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccc--cc---ceeecccccceeeeec
Q 019672          217 -TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP--ES---VNEVLDPADHHVLRNA  290 (337)
Q Consensus       217 -~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~--~~---~~~~w~~~~~~~~~~~  290 (337)
                       .....|..|+|++|+.   .||.--.|. |++|-...-         ..|+...+.  +.   ..-.|++..       
T Consensus       301 ~~~~~~v~~l~Wn~ds~---iLAv~~~~~-vqLWt~~NY---------HWYLKqei~~~~~~~~~~~~Wdpe~-------  360 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSE---ILAVWLEDR-VQLWTRSNY---------HWYLKQEIRFSSSESVNFVKWDPEK-------  360 (928)
T ss_pred             CCCCceeeEEEECCCCC---EEEEEecCC-ceEEEeeCC---------EEEEEEEEEccCCCCCCceEECCCC-------
Confidence             2345699999999999   899977554 999976432         122222211  11   114576653       


Q ss_pred             cCCCcccCEEEEEEeCCcEEEEEE
Q 019672          291 FPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       291 ~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                            ..+|.+++.+|.+.++.+
T Consensus       361 ------p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  361 ------PLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             ------CCEEEEEecCCcEEEEEE
Confidence                  367999999999977666

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.53  E-value=8.1e-05  Score=75.81  Aligned_cols=293  Identities=14%  Similarity=0.183  Sum_probs=153.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC-C-------CCCCce
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-P-------SLSPRR   76 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~-------~~~d~~   76 (337)
                      -+.+|.+++||||++.||..+.++ +.+- ..+++.+.+...+.     -.+..+..+.||-|+. +       +.+.+.
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~m-t~~fd~i~E~~l~~-----~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~  192 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLM-TRDFDPISEVPLDS-----DDFGESKHVSVGWGKKETQFHGSAGKAAARQ  192 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEE-eccceEEEEeecCc-----cccCCCceeeeccCcccCccCcchhhhhhhh
Confidence            356899999999999998887665 3333 34455554433211     0111122233333311 1       000000


Q ss_pred             EEEEECCCC-CEEEEEEcCCceeEEEEcCCe--EEEEE-----C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           77 LCLFNTTTG-TALRELNFLTSILAVRLNKKR--LVIVL-----R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        77 v~iwd~~~~-~~~~~~~~~~~v~~i~~~~~~--~~v~~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                        +=|.... .....+.....-..|+|-+|+  +++..     +  ..++||+-. |++..+-+...+-  .-++++-|.
T Consensus       193 --~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL--e~~l~WrPs  267 (928)
T PF04762_consen  193 --LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL--EGALSWRPS  267 (928)
T ss_pred             --ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc--cCCccCCCC
Confidence              0011000 000111122233457776655  33332     2  479999954 6544333322221  225566677


Q ss_pred             ccEEEEcCCC-CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeecc
Q 019672          147 ACFLAVPAST-TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRR  215 (337)
Q Consensus       147 ~~~la~~~~~-~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~  215 (337)
                      |.++|++... ....|.+|.-...+.        .....|..++|++|+..||..-.|.  |.+|-..+..  +.+++.-
T Consensus       268 G~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~  345 (928)
T PF04762_consen  268 GNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRF  345 (928)
T ss_pred             CCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEc
Confidence            7899977531 134566666432221        1126799999999999999988775  6999987764  2333432


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCC--Ccc--------------cccccccccccc--ee
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG--GRT--------------SSILGSILPESV--NE  277 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~--~~~--------------~~~~~~~~~~~~--~~  277 (337)
                      .. ...+..+.|+|...  ..|......|.+..++..-.......  ...              ..+.....|..-  ..
T Consensus       346 ~~-~~~~~~~~Wdpe~p--~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~  422 (928)
T PF04762_consen  346 SS-SESVNFVKWDPEKP--LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE  422 (928)
T ss_pred             cC-CCCCCceEECCCCC--CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence            21 22345589999876  37888888788877665432221100  000              011112222211  11


Q ss_pred             ecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          278 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      +- .   ..-++.+++.+.+..+++...||.+.+|.++...
T Consensus       423 l~-~---~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  423 LE-L---PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             Ec-C---CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            10 0   0113444556666779999999999999986653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.51  E-value=0.00037  Score=60.29  Aligned_cols=209  Identities=13%  Similarity=0.074  Sum_probs=123.9

Q ss_pred             EEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672           12 FVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (337)
Q Consensus        12 ~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~   89 (337)
                      ++.|.+ ++.++.+....+ +..|+..+++...... ....-+.+....+.++++..        +.+.++|+.+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PGPNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SSEEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CCCceEEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence            578888 667677765554 6888988876543222 22222333323344444432        456666999886544


Q ss_pred             EEEc---C---CceeEEEEcCCeEEEEE-C----------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           90 ELNF---L---TSILAVRLNKKRLVIVL-R----------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        90 ~~~~---~---~~v~~i~~~~~~~~v~~-d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      ....   .   ....++.+++++.+..+ .          +.+..++.. ++........   .....+++++++..|.+
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~---~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL---GFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE---SSEEEEEEETTSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc---ccccceEECCcchheee
Confidence            3332   1   25678889887754443 1          456777766 4433222211   12234556677776665


Q ss_pred             cCCCCccEEEEEEccCCcc-------cc---c--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          153 PASTTKGSVLVYNVMELHS-------HC---E--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~-------~~---~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      +.+ ..+.|..+|+.....       ..   .  +..-.++++.+|++.++....+. |.++|.+ |+.+..+....  .
T Consensus       151 ~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~--~  225 (246)
T PF08450_consen  151 ADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV--P  225 (246)
T ss_dssp             EET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS--S
T ss_pred             ccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC--C
Confidence            544 478899998863221       11   1  23788999999998877766676 6799977 88888776542  2


Q ss_pred             eEEEEEee-cCCCcccEEEEEe
Q 019672          221 TIFSLSFG-QSMQFQDILVATS  241 (337)
Q Consensus       221 ~i~~l~fs-~dg~~~~~las~s  241 (337)
                      .+++++|. |+.+   .|...+
T Consensus       226 ~~t~~~fgg~~~~---~L~vTt  244 (246)
T PF08450_consen  226 RPTNCAFGGPDGK---TLYVTT  244 (246)
T ss_dssp             SEEEEEEESTTSS---EEEEEE
T ss_pred             CEEEEEEECCCCC---EEEEEe
Confidence            58999995 6666   555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.50  E-value=3.9e-07  Score=54.50  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +++.++..  |...|++|+|+|++.   +|++++.|++|+|||
T Consensus         2 ~~~~~~~~--h~~~i~~i~~~~~~~---~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRG--HSSSINSIAWSPDGN---FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEES--SSSSEEEEEEETTSS---EEEEEETTSEEEEEE
T ss_pred             eEEEEEcC--CCCcEEEEEEecccc---cceeeCCCCEEEEEC
Confidence            45666642  466799999999998   999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.48  E-value=3.9e-05  Score=73.25  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEEcCCC-----------CE-EEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEE---ccCC-CEEEEEe
Q 019672            5 SSSYPVFFVSFNQDN-----------SG-FALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEM---LYSS-SLLAIVG   65 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg-----------~~-la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~---~~~~-~~~~~~~   65 (337)
                      -|+..|+.+.|.|-.           .. ||++.-.| +.+||...+..+...+.+  .+..+++   ...+ ..++.+.
T Consensus        53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh  132 (1062)
T KOG1912|consen   53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH  132 (1062)
T ss_pred             cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec
Confidence            456789999997632           12 34444445 799998877655444332  2222232   2233 3444444


Q ss_pred             CCCCCCCCCceEEEEECCCCCEEEEEEcCCceeE-EEEc
Q 019672           66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLN  103 (337)
Q Consensus        66 ~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~  103 (337)
                      +       .++|.+||..+|+..-.+.....+.. +.++
T Consensus       133 ~-------ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~D  164 (1062)
T KOG1912|consen  133 G-------SSTLVLWNTDTGEKFWKYDYSHEILSCFRVD  164 (1062)
T ss_pred             C-------CcEEEEEEccCCceeeccccCCcceeeeeeC
Confidence            4       68999999999988777665554433 4443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.48  E-value=0.00015  Score=61.79  Aligned_cols=193  Identities=11%  Similarity=0.125  Sum_probs=121.0

Q ss_pred             EEEcCCCCEEEEEcCCceEEEeCCCC-c-EEEEE----e-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           13 VSFNQDNSGFALSTKDGFKIFDSSTG-R-LCYER----A-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        13 ~~fs~dg~~la~g~~~g~~vw~~~~~-~-~~~~~----~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      ++.+.||+.||+-.+..+.|-..... . .+-..    + ...-..+++.++...++++..       .++|+++|+.. 
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-------~G~i~vfdl~g-   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-------TGTIRVFDLMG-   74 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-------CCeEEEEeccc-
Confidence            56789999999988888766643322 1 11111    1 123355677788888888765       68999999875 


Q ss_pred             CEEEEEEc--------CCceeEEEEcC--------CeEEEEE-CCeEEEEECC-----CCeeeeeecCCC-CCceEEEEe
Q 019672           86 TALRELNF--------LTSILAVRLNK--------KRLVIVL-REKTYIYDAN-----TLAILDTIDTVP-NLKGLCAFS  142 (337)
Q Consensus        86 ~~~~~~~~--------~~~v~~i~~~~--------~~~~v~~-d~~i~i~d~~-----~~~~~~~~~~~~-~~~~~~~~~  142 (337)
                      ..+..+..        ...|.++.|-+        ..+++.. +|.++=|-+.     ..+..+++.... .+.++.++.
T Consensus        75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            33433321        12455554422        1344443 7766655542     234445554322 356788888


Q ss_pred             eCCCccEEEEcCCCCcc---------EEEEEEccCCccc----------------------------------ccCceEE
Q 019672          143 PSLNACFLAVPASTTKG---------SVLVYNVMELHSH----------------------------------CEAPLAA  179 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg---------~v~i~d~~~~~~~----------------------------------~~~~i~~  179 (337)
                      .+|...+|.++|...+.         -+..|.+.+...-                                  .+..|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            88887888887743211         2556665432110                                  0156889


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      |.+||||++||+...+|. |.+|++.+-+...++.
T Consensus       235 mSlSPdg~~La~ih~sG~-lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGS-LSLWEIPSLRLQRSWK  268 (282)
T ss_pred             EEECCCCCEEEEEEcCCe-EEEEecCcchhhcccc
Confidence            999999999999999998 5899999887766654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.00041  Score=64.78  Aligned_cols=188  Identities=11%  Similarity=0.064  Sum_probs=111.6

Q ss_pred             EEEccCCCE-EEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE----CCeEEEEECCCCe
Q 019672           52 VEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDANTLA  124 (337)
Q Consensus        52 ~~~~~~~~~-~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~  124 (337)
                      -.+.++++. +++++...    ....|.++|+.+++...-...........|+|++  +++..    +..|+++|+.+++
T Consensus       193 p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             EEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            456666664 55555420    1458999999988765544555556666788764  44443    3479999997775


Q ss_pred             eeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEEccCCcccc--cCceEEEEeCCCCCEEEEEeCCC-----
Q 019672          125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC--EAPLAAIVLSSNGMYIATASEQG-----  196 (337)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~--~~~i~~~~~s~dg~~lat~s~dg-----  196 (337)
                      .. .+.....  ......++||+..+++.+.. ....|.+.|+.++....  ........|||||++||..+...     
T Consensus       269 ~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        269 LT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             EE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence            43 3322221  11223466777777766531 12267778887665421  11212358999999998877542     


Q ss_pred             ---cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-Cc--EEEEecCC
Q 019672          197 ---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSPGF  253 (337)
Q Consensus       197 ---~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~--v~iw~l~~  253 (337)
                         .-|.+.|+.+++. ..+..+.   ......|||||+   +|+-.+.+ +.  +.+.+++.
T Consensus       346 ~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~---~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        346 KNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGG---SIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCC---EEEEEEccCCcEEEEEEecCC
Confidence               2357788888764 3343321   123578999999   66666544 33  44555543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.46  E-value=1.1e-05  Score=70.11  Aligned_cols=190  Identities=13%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCC-CC---cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSS-TG---RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +.++++++++++...|.+|.++| +.=|.+. ..   ........+...+..+.|+-..-.+++.|     .|. =..|-
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~-----~dk-~~~~h  141 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG-----KDK-QFAWH  141 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec-----ccc-ceEEE
Confidence            56789999999999999999887 3444321 11   11111111222333333333222223322     233 34454


Q ss_pred             -CCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEEC--CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 -TTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 -~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                       .+.+..+..+.+.....+..+.-....+.. .+.|.+-.+  ....++.++..+  ...+.++++++...++.++.  .
T Consensus       142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~--~  217 (404)
T KOG1409|consen  142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGA--S  217 (404)
T ss_pred             eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEecc--c
Confidence             455555555544333322222211222222 334443332  334455555544  44678888888877877776  5


Q ss_pred             ccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          158 KGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       158 dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      |..|.+||+--.+-.      |...|..+..-+--+.|.++++||. |-+||++..
T Consensus       218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn~~  272 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMNVK  272 (404)
T ss_pred             cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEeccce
Confidence            899999998644321      2366777777777789999999997 579998644

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=0.00014  Score=67.88  Aligned_cols=189  Identities=13%  Similarity=0.092  Sum_probs=113.2

Q ss_pred             CeEEEEEcCCCCE-EEEEcCC-c---eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            9 PVFFVSFNQDNSG-FALSTKD-G---FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         9 ~v~~~~fs~dg~~-la~g~~~-g---~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .+....|+|||+. ++..+.. +   +.++|+.+++...-... +......+.+++..+++....    ..+..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEEC
Confidence            6778999999985 5543332 2   57889988865332222 333445678888888776542    12567888899


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCe--EEEEECC----eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           83 TTGTALRELNFLTSILAVRLNKKR--LVIVLRE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      .+++...-.........-.|+|++  ++...+.    .|+++|+.+++..+.... ..  ..  ..++|++..+++....
T Consensus       265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~--~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NN--SSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cC--ceECCCCCEEEEEEcC
Confidence            887643322222222344677654  5555533    789999987765333221 11  11  2566778888877642


Q ss_pred             Cc-------cEEEEEEccCCccc--cc-CceEEEEeCCCCCEEEEEeCCCc--EEEEEEcCC
Q 019672          157 TK-------GSVLVYNVMELHSH--CE-APLAAIVLSSNGMYIATASEQGT--IIRVFLVSE  206 (337)
Q Consensus       157 ~d-------g~v~i~d~~~~~~~--~~-~~i~~~~~s~dg~~lat~s~dg~--~i~vwd~~~  206 (337)
                      .+       ..|.+.|+.++...  .. .......|+|||+.|+..+.++.  .+.+.++..
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            11       36888888766532  11 23345889999998887765432  244566643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=8.4e-07  Score=76.86  Aligned_cols=148  Identities=11%  Similarity=0.100  Sum_probs=95.4

Q ss_pred             CCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-----CEEEEEE
Q 019672           18 DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-----TALRELN   92 (337)
Q Consensus        18 dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-----~~~~~~~   92 (337)
                      -|..+++|.+.++-+-|+++|..-.=....++....+.-..++ ++.|.      ..+.|...|++.+     .+...+-
T Consensus       224 ~gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nL-v~~Gc------RngeI~~iDLR~rnqG~~~~a~rly  296 (425)
T KOG2695|consen  224 MGYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNL-VFNGC------RNGEIFVIDLRCRNQGNGWCAQRLY  296 (425)
T ss_pred             ceeeecccccceeEEEEeecccccccccchhHHHHHhcccCCe-eEecc------cCCcEEEEEeeecccCCCcceEEEE
Confidence            3455778888888888988885432223333333333323343 34443      5789999999864     4566777


Q ss_pred             cCCceeEEE---EcCCeEEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672           93 FLTSILAVR---LNKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus        93 ~~~~v~~i~---~~~~~~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      |++.|+++.   ++.+.+++.. +++|++||++--+.   +.+++.|.|...-.-+..++.+..++++|  +|-.-+||.
T Consensus       297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G--dDcytRiWs  374 (425)
T KOG2695|consen  297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG--DDCYTRIWS  374 (425)
T ss_pred             cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc--CeeEEEEEe
Confidence            888887765   4666666665 89999999986655   77777776654444444455555566555  477777777


Q ss_pred             ccCCccccc
Q 019672          166 VMELHSHCE  174 (337)
Q Consensus       166 ~~~~~~~~~  174 (337)
                      +.++..+.+
T Consensus       375 l~~ghLl~t  383 (425)
T KOG2695|consen  375 LDSGHLLCT  383 (425)
T ss_pred             cccCceeec
Confidence            777666554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.44  E-value=0.00012  Score=66.79  Aligned_cols=225  Identities=13%  Similarity=0.168  Sum_probs=139.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----------------CceEEEeCCCCcEEEEEeeCCE-----EEEEEccCCCEEEEEeC
Q 019672            8 YPVFFVSFNQDNSGFALSTK----------------DGFKIFDSSTGRLCYERAVGAF-----SIVEMLYSSSLLAIVGA   66 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~----------------~g~~vw~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   66 (337)
                      ..|..+.|+|.+++|.+=+.                +.+.|||+.++.+++.......     .++.+..+.++.+-+.+
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            46889999999999987432                2357999999999887643222     25566666676665544


Q ss_pred             CCCCCCCCceEEEEECCCCCEEEEEEc----CCceeEEEEcCC----eEEEEE------CCeEEEEECCCCeeeeeecCC
Q 019672           67 GEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLNKK----RLVIVL------REKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        67 g~~~~~~d~~v~iwd~~~~~~~~~~~~----~~~v~~i~~~~~----~~~v~~------d~~i~i~d~~~~~~~~~~~~~  132 (337)
                              ..+.|+++ ++. +....+    ...|....++|.    .++.-+      ..++++|.+.....+.+-.. 
T Consensus       152 --------~sl~i~e~-t~n-~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-  220 (561)
T COG5354         152 --------SSLYIHEI-TDN-IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-  220 (561)
T ss_pred             --------CeEEEEec-CCc-cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-
Confidence                    48999987 332 112111    235666777654    222222      45899999976554433210 


Q ss_pred             CCCceEEEEeeCCCccEEEEcC---------CCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEe--CCCc
Q 019672          133 PNLKGLCAFSPSLNACFLAVPA---------STTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATAS--EQGT  197 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~---------~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s--~dg~  197 (337)
                      .+ ..-|.+.+++.+.++++--         +-....+.|++++.....    .+++|...+|+|.++.+++.+  .+..
T Consensus       221 fk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~  299 (561)
T COG5354         221 FK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS  299 (561)
T ss_pred             Ee-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccc
Confidence            00 0123344444443333210         001356888888743321    248999999999999888766  4544


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCC
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGF  253 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~  253 (337)
                       +-++|++.. ...-+..+    .=+.+.|||.++   +++.++-|   |.|-||+...
T Consensus       300 -~s~~~lr~N-l~~~~Pe~----~rNT~~fsp~~r---~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         300 -VSVFDLRGN-LRFYFPEQ----KRNTIFFSPHER---YILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             -eeecccccc-eEEecCCc----ccccccccCccc---EEEEecCCccccceEEeccCC
Confidence             578999765 44444322    234578999999   88888777   6799998654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=0.00049  Score=60.25  Aligned_cols=231  Identities=14%  Similarity=0.121  Sum_probs=131.3

Q ss_pred             eEEEEEcC-CCCEEEEEcCCc-e-EEEeCCCCcEEEEEee----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672           10 VFFVSFNQ-DNSGFALSTKDG-F-KIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus        10 v~~~~fs~-dg~~la~g~~~g-~-~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .-.++.+| ++..++.+-.-| + .+||..+++.......    +-.++-.+..++..+...-..  -....+.|-|||.
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~   84 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND--YETGRGVIGVYDA   84 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc--cCCCcEEEEEEEC
Confidence            34577888 555577777666 4 8999999987655432    112344566667766554331  1234789999999


Q ss_pred             C-CCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-------------------CCeEEEEECCCCeeeeeecCCC--CCce
Q 019672           83 T-TGTALRELNFLT-SILAVRLNKKR--LVIVL-------------------REKTYIYDANTLAILDTIDTVP--NLKG  137 (337)
Q Consensus        83 ~-~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-------------------d~~i~i~d~~~~~~~~~~~~~~--~~~~  137 (337)
                      . +-+.+.++.... .--.+.+.+++  ++|+.                   +-++.+.|..+++++.+...++  +.-.
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS  164 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS  164 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence            8 556677776443 23344555555  55553                   1235556667777666644322  1111


Q ss_pred             EEEEeeCCCccEEEEcCCC--------------CccEEEEEEccCCcc-cccCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672          138 LCAFSPSLNACFLAVPAST--------------TKGSVLVYNVMELHS-HCEAPLAAIVLSSNGMYIATASEQGTIIRVF  202 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~--------------~dg~v~i~d~~~~~~-~~~~~i~~~~~s~dg~~lat~s~dg~~i~vw  202 (337)
                      +--++.++++..++..-..              .++.++..++..... ...+.|-+|+++++|.++|..|-.|..+-+|
T Consensus       165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            1122223333222211100              011122222211110 1128899999999999999999888888999


Q ss_pred             EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |..+++.+.....    ..+..|+-.+++    ++++.+. |.  ++.+..
T Consensus       245 d~~tg~~~~~~~l----~D~cGva~~~~~----f~~ssG~-G~--~~~~~~  284 (305)
T PF07433_consen  245 DAATGRLLGSVPL----PDACGVAPTDDG----FLVSSGQ-GQ--LIRLSP  284 (305)
T ss_pred             ECCCCCEeecccc----CceeeeeecCCc----eEEeCCC-cc--EEEccC
Confidence            9999998765532    236666666555    5665544 43  444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.41  E-value=0.00017  Score=63.81  Aligned_cols=217  Identities=17%  Similarity=0.168  Sum_probs=122.9

Q ss_pred             ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeC----CCCCCCCCceEEEEECCCCCEEEEEEcCCc--ee----
Q 019672           29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA----GEQPSLSPRRLCLFNTTTGTALRELNFLTS--IL----   98 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~----   98 (337)
                      .+.|+|.++++.+-....+-...+.+.++.+.+..++.    +..+ -....|.+||.++-++..++..+..  ..    
T Consensus        18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG-~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRG-ERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEE-EEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccc-cceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            46888999998876665544555566677766654432    1000 1234699999999999998877653  11    


Q ss_pred             --EEEEc--CCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc----
Q 019672           99 --AVRLN--KKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----  167 (337)
Q Consensus        99 --~i~~~--~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~----  167 (337)
                        .+.++  ...+++..   ..+|.|-|+...+.+.++.++.    ...+-|.++..+...|+   ||.+.-..+.    
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~---DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCG---DGSLLTVTLDADGK  169 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEET---TSCEEEEEETSTSS
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEec---CCceEEEEECCCCC
Confidence              12333  33344443   4578888888888888886642    12222222222333332   3333333332    


Q ss_pred             --------------------------------------------CCccccc-----------------CceEEEEeCCCC
Q 019672          168 --------------------------------------------ELHSHCE-----------------APLAAIVLSSNG  186 (337)
Q Consensus       168 --------------------------------------------~~~~~~~-----------------~~i~~~~~s~dg  186 (337)
                                                                  .......                 +.-.-+++++..
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~  249 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS  249 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence                                                        1110000                 223446666654


Q ss_pred             CEEEEEeC---C------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE-EeCCCcEEEEecCCCcc
Q 019672          187 MYIATASE---Q------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA-TSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       187 ~~lat~s~---d------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las-~s~dg~v~iw~l~~~~~  256 (337)
                      ++|..--.   +      |+-|-++|+.+++++.++..   ..++.+|+.|.|.+  .+|.+ ...++.+.|||..+++.
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~--P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDK--PLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS---EEEEEETTTTEEEEEETTT--E
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCC--cEEEEEcCCCCeEEEEeCcCCcE
Confidence            44443221   1      23456779999999988853   34688999999887  35544 45689999999988765


Q ss_pred             cC
Q 019672          257 QR  258 (337)
Q Consensus       257 ~~  258 (337)
                      .+
T Consensus       325 ~~  326 (342)
T PF06433_consen  325 VR  326 (342)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.35  E-value=8.9e-07  Score=52.88  Aligned_cols=31  Identities=32%  Similarity=0.556  Sum_probs=28.3

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          172 HCEAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       172 ~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      .|..+|++|+|+|++++||+++.|++ |++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             CCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            35589999999999999999999997 69997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.35  E-value=0.00011  Score=62.62  Aligned_cols=147  Identities=12%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             CccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--eeccCCcceeEE
Q 019672          157 TKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRRGTYPSTIF  223 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~--~~~~~~~~~~i~  223 (337)
                      ..|.|.++........+.           ....++.|++.|..++++-.+|. +.+-+...+....  +++  .|..+++
T Consensus        93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~-~~~v~~t~~~le~vq~wk--~He~E~W  169 (339)
T KOG0280|consen   93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGS-ISGVYETEMVLEKVQTWK--VHEFEAW  169 (339)
T ss_pred             ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCc-EEEEecceeeeeeccccc--ccceeee
Confidence            478888887653322111           22467888999999999999998 4555555444333  443  3466788


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccc-ccceeeee-ccCCCcccCEEE
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP-ADHHVLRN-AFPAGVKRASVS  301 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~-~~~~~~~~~~l~  301 (337)
                      ...|+....  |.+.+|++|+.+..||++-+++.                    +|.. ..+..-+. .....+++.+|+
T Consensus       170 ta~f~~~~p--nlvytGgDD~~l~~~D~R~p~~~--------------------i~~n~kvH~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  170 TAKFSDKEP--NLVYTGGDDGSLSCWDIRIPKTF--------------------IWHNSKVHTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             eeecccCCC--ceEEecCCCceEEEEEecCCcce--------------------eeecceeeecceEEEecCCCCCceEE
Confidence            899986655  69999999999999999844331                    1111 00100011 111234568999


Q ss_pred             EEEeCCcEEEEEEe-------cCCCCeeceEEee
Q 019672          302 VITYNGYFVEYIFS-------INNCCESTWTLDR  328 (337)
Q Consensus       302 ~~~~dg~~~~~~~~-------~~~~~~~~~~~~~  328 (337)
                      +|+-|..++.|+..       +.+-+.+.|.+..
T Consensus       228 TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~  261 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH  261 (339)
T ss_pred             EeccccceeeeehhcccCccccCccccceEEEEe
Confidence            99999999999885       1222346787743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=1.8e-05  Score=73.60  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +.|.|++++|+...|+.|+.||+ |.+||...+.....  +.  .-..+.++|+|+|.   ++++|+..|.+.+||+.-
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~--ka--~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA--KA--EFIPTLIAWHPDGA---IFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CcceEEecCcccceEEEEecCCe-EEEEEcCCCeeeee--ee--cccceEEEEcCCCc---EEEEEcCCceEEEEEeec
Confidence            78999999999999999999998 57999977643322  11  23467899999999   999999999999999764

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.34  E-value=1.3e-05  Score=70.86  Aligned_cols=154  Identities=13%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             EEEEcCCCCEEEEEcCCce-EEEeCCCCc----EE--EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672           12 FVSFNQDNSGFALSTKDGF-KIFDSSTGR----LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~-~vw~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .+..+++++++|++..... .+++.....    ++  +........+..+..+...++....|     .+..+.+|....
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkag-----D~~~~di~s~~~  141 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAG-----DVYSFDILSADS  141 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecC-----Cceeeeeecccc
Confidence            3456788888888876553 466554332    21  22233444555566666666555554     567889998877


Q ss_pred             CCEEEEEEcCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           85 GTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.+.-.+.|-+-++++++++|.-.+.+   |++|+|-.....-.+..+.. ++...+..++.-+ +..|.++|  .|++|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~-~~~LlS~s--GD~tl  217 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTD-NYLLLSGS--GDKTL  217 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeecc-CceeeecC--CCCcE
Confidence            777777777788999999887655554   77899877765544555432 2334455555533 44567776  49999


Q ss_pred             EEEEccCCccccc
Q 019672          162 LVYNVMELHSHCE  174 (337)
Q Consensus       162 ~i~d~~~~~~~~~  174 (337)
                      ++||+.+++.+++
T Consensus       218 r~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  218 RLWDITSGKLLDT  230 (390)
T ss_pred             EEEecccCCcccc
Confidence            9999999998765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.27  E-value=1.6e-05  Score=66.60  Aligned_cols=152  Identities=10%  Similarity=0.157  Sum_probs=89.2

Q ss_pred             ceeEEEEcCCeEEEEE-CCeEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCCc
Q 019672           96 SILAVRLNKKRLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMELH  170 (337)
Q Consensus        96 ~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~  170 (337)
                      +..+.....++++++. |+.+.+++.+.... .+.+...  ..+....+....+..+.+++..   .-+...+|+++..+
T Consensus        93 p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~--~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~  170 (319)
T KOG4714|consen   93 PNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSI--HSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK  170 (319)
T ss_pred             CcccccccCCceEecCCCceEEEEechHHHhhhhhcccc--cccccccceeecccEEecCCcceEeeccceeeecccccc
Confidence            3344444455566655 78888888764211 1111110  0111111111122244333310   01234455554333


Q ss_pred             cc---cc--CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          171 SH---CE--APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       171 ~~---~~--~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      ..   ++  ..|.+++-+|. .+.+++|++||. +-+||.+....+..+-. .|+++|.-+-|+|...  +.|+++++||
T Consensus       171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk~p--~~Lft~sedG  246 (319)
T KOG4714|consen  171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLK-AHKAEIWEVHFHPKNP--EHLFTCSEDG  246 (319)
T ss_pred             cccccccccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHH-HhhhhhhheeccCCCc--hheeEecCCC
Confidence            22   11  55999999995 456777888886 68999998865444433 3577899999999876  5999999999


Q ss_pred             cEEEEecCC
Q 019672          245 SLHVFSPGF  253 (337)
Q Consensus       245 ~v~iw~l~~  253 (337)
                      .+--||-.+
T Consensus       247 slw~wdas~  255 (319)
T KOG4714|consen  247 SLWHWDAST  255 (319)
T ss_pred             cEEEEcCCC
Confidence            999999764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=1.4e-06  Score=83.83  Aligned_cols=202  Identities=14%  Similarity=0.143  Sum_probs=130.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +...-+|++|+-+.++|++|+-.| +++||+.+|...-....|+  +..++-.-+++.+.+.+..     +.--..+|++
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~-----S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS-----SSPLSALWDA 1174 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc-----cCchHHHhcc
Confidence            456789999999999999999887 6999999997655444444  4455555556666665552     2335678997


Q ss_pred             CC-CCEEEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCC--CCceEEEEeeCCCccEEEEcCCC
Q 019672           83 TT-GTALRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        83 ~~-~~~~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      .. +.+.+++..   -.+++|+..  ..++++ .+...+||+.+...+.++-+..  +...-.+.+++|+..++.     
T Consensus      1175 ~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----- 1246 (1516)
T ss_pred             ccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-----
Confidence            53 444444432   334566542  333444 5688999999987776643221  111113345666666665     


Q ss_pred             CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          157 TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .||  .+||.+....+|.    ..-..=.|+|.|..++.-+      .|||+++.+.++.... .   .-..|.|+..|.
T Consensus      1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~-L---dqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS------EIWDMRTFKLLHSVPS-L---DQCAVTFNSTGD 1314 (1516)
T ss_pred             eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec------hhhhhHHHHHHhcCcc-c---cceEEEeccCcc
Confidence            355  4799998876665    2122336899999887642      4799999887765531 1   245678999887

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.23  E-value=3.4e-05  Score=74.87  Aligned_cols=173  Identities=18%  Similarity=0.229  Sum_probs=117.8

Q ss_pred             CCEEEEE-cCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-c
Q 019672           19 NSGFALS-TKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-S   96 (337)
Q Consensus        19 g~~la~g-~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~   96 (337)
                      ++.+..| -.+.+..+|+.+.++....+...-++.-+..++. ..++|.      ..|+|.+-|..+.+.++++..++ .
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr-~lf~G~------t~G~V~LrD~~s~~~iht~~aHs~s  219 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNR-NLFCGD------TRGTVFLRDPNSFETIHTFDAHSGS  219 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCc-EEEeec------ccceEEeecCCcCceeeeeeccccc
Confidence            3344444 4455678888887766554433322222333333 334443      47899999999999999997665 7


Q ss_pred             eeEEEEcCCeEEEEE----------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEc
Q 019672           97 ILAVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV  166 (337)
Q Consensus        97 v~~i~~~~~~~~v~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~  166 (337)
                      |.++...++.++.++          |.-|+|||++.++.+.-+..+..+ ...-+.|.-.. .+|+++  ..|+.++-|.
T Consensus       220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S--~sGq~q~vd~  295 (1118)
T KOG1275|consen  220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTS--QSGQFQFVDT  295 (1118)
T ss_pred             eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEe--cccceeeccc
Confidence            888999999888775          557999999998887777665554 22344443333 344444  3689999994


Q ss_pred             cCCcc-------cc--cCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          167 MELHS-------HC--EAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       167 ~~~~~-------~~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      .+...       ++  ...+.++++|++|..+|-|..+|. |.+|-
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA  340 (1118)
T ss_pred             cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence            33221       11  155999999999999999999997 69997

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.19  E-value=6.4e-05  Score=73.07  Aligned_cols=167  Identities=15%  Similarity=0.207  Sum_probs=117.1

Q ss_pred             CceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      .+.+...|+.+.+......... .|.-+..+...+.++. .|+|.+-|.++.+.++++..|.+  .+..+...  +..|+
T Consensus       156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~--siSDfDv~--GNlLi  231 (1118)
T KOG1275|consen  156 QEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG--SISDFDVQ--GNLLI  231 (1118)
T ss_pred             hhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccc--ceeeeecc--CCeEE
Confidence            4567778999888877776655 4655555555555544 78999999999999999987755  45566654  44777


Q ss_pred             EcCCC-------CccEEEEEEccCCccccc----CceEEEEeCCC-CCEEEEEeCCCcEEEEEE---cCCCc-eeEeecc
Q 019672          152 VPAST-------TKGSVLVYNVMELHSHCE----APLAAIVLSSN-GMYIATASEQGTIIRVFL---VSEAT-KSYSFRR  215 (337)
Q Consensus       152 ~~~~~-------~dg~v~i~d~~~~~~~~~----~~i~~~~~s~d-g~~lat~s~dg~~i~vwd---~~~~~-~~~~~~~  215 (337)
                      ++|..       -|.-|+|||++..+.+..    ..-.-+.|.|. -..+|.+|..|. ..+-|   +.+.. .++-+  
T Consensus       232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq-~q~vd~~~lsNP~~~~~~v--  308 (1118)
T KOG1275|consen  232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQ-FQFVDTATLSNPPAGVKMV--  308 (1118)
T ss_pred             EeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccc-eeeccccccCCCccceeEE--
Confidence            77732       367799999998876532    22245677775 347888888897 47888   32221 11111  


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ......+..+.+|++|+   .||.|..+|.|++|.
T Consensus       309 ~p~~s~i~~fDiSsn~~---alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  309 NPNGSGISAFDISSNGD---ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccCCCcceeEEecCCCc---eEEEecccCcEeeec
Confidence            11223488999999999   999999999999997

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.18  E-value=7.4e-05  Score=62.70  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCC-
Q 019672          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSS-  184 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~-  184 (337)
                      -+..+.|+++..+.+..  .......+.+++.+|..+.+.++|. .||.+.+||.+....      .|+.+|+.+-|+| 
T Consensus       158 ~d~~~a~~~~p~~t~~~--~~~~~~~v~~l~~hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  158 QDNFYANTLDPIKTLIP--SKKALDAVTALCSHPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             ccceeeecccccccccc--cccccccchhhhCCcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            45667777754332211  1112234677777777777776665 699999999987753      3669999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEEcC
Q 019672          185 NGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       185 dg~~lat~s~dg~~i~vwd~~  205 (337)
                      ++..|.++++||.++ -||..
T Consensus       235 ~p~~Lft~sedGslw-~wdas  254 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLW-HWDAS  254 (319)
T ss_pred             CchheeEecCCCcEE-EEcCC
Confidence            677999999999864 78875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=3.1e-05  Score=69.55  Aligned_cols=189  Identities=9%  Similarity=0.096  Sum_probs=126.3

Q ss_pred             CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE----EcCCceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeee
Q 019672           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL----NFLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDT  128 (337)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~  128 (337)
                      ..+++..++       -|+.++.|--..-.-+.-+    .+...|..+..+-++.+.++    |..++++|+.+...+.-
T Consensus        19 ka~fiiqAS-------lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminm   91 (558)
T KOG0882|consen   19 KAKFIIQAS-------LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINM   91 (558)
T ss_pred             hhheEEeee-------cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhh
Confidence            345555554       4899999975432222111    22346677777777776665    67999999987766655


Q ss_pred             ecCCCCCceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCc-------ccccCceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672          129 IDTVPNLKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH-------SHCEAPLAAIVLSSNGMYIATASEQGTIIR  200 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~-------~~~~~~i~~~~~s~dg~~lat~s~dg~~i~  200 (337)
                      +....-|...+.+...++ -..+|.+.. .+|.+.|+|-....       ..|..||.++.++|-+.-+++....|. |.
T Consensus        92 iKL~~lPg~a~wv~skGd~~s~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VE  169 (558)
T KOG0882|consen   92 IKLVDLPGFAEWVTSKGDKISLIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VE  169 (558)
T ss_pred             cccccCCCceEEecCCCCeeeeEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eE
Confidence            555444545544443332 335666555 68999999966433       235599999999999999988887785 78


Q ss_pred             EEEcCC------CceeEeeccC-------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          201 VFLVSE------ATKSYSFRRG-------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       201 vwd~~~------~~~~~~~~~~-------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      -|..+.      .+....++..       .......++.|+|+|.   .+++-+.|..|+++++++++-.
T Consensus       170 yWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  170 YWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---QISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             eecCCCcccCccccccccccccchhhcccccccCccceEEccccC---cccccCcccEEEEEEeccchhh
Confidence            998862      1111111110       1123478999999999   9999999999999999887643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.16  E-value=0.00021  Score=68.53  Aligned_cols=293  Identities=16%  Similarity=0.095  Sum_probs=165.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeC--CEEEEEEccCC----------CEEEEEeCCCCCCCC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG--AFSIVEMLYSS----------SLLAIVGAGEQPSLS   73 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~g~~~~~~   73 (337)
                      +...-..+.|+|.| ++|-|+-.-+.|-|..+.+.+.....+  .+..+.+.+.+          ..+.+.++.     -
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~   87 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----I   87 (1062)
T ss_pred             CcccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc-----c
Confidence            34446788999987 577788777888898887777655443  34445543311          223333332     4


Q ss_pred             CceEEEEECCCCCEEEEEEcCC-ceeEEEEcC------CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNK------KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~------~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      .|+|.+||...+..+..+.++. ++.++.|-+      +.+++.. ...+.+|+..+|+.+....-..  .-+.++..+|
T Consensus        88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DP  165 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDP  165 (1062)
T ss_pred             cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCC
Confidence            6899999999998888887664 777777632      2333333 6799999999998887765333  3455677665


Q ss_pred             C-ccEEEEcCCCCccEEEEEEccCCcc-----------------cc-----------c---------CceEEEEeCCCCC
Q 019672          146 N-ACFLAVPASTTKGSVLVYNVMELHS-----------------HC-----------E---------APLAAIVLSSNGM  187 (337)
Q Consensus       146 ~-~~~la~~~~~~dg~v~i~d~~~~~~-----------------~~-----------~---------~~i~~~~~s~dg~  187 (337)
                      - ..+++..|+  .|.|.+-+....+.                 .|           +         .....++|+|.-+
T Consensus       166 fd~rh~~~l~s--~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r  243 (1062)
T KOG1912|consen  166 FDSRHFCVLGS--KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR  243 (1062)
T ss_pred             CCcceEEEEcc--CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh
Confidence            2 334444442  56666655421110                 00           0         1123467788544


Q ss_pred             EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccc
Q 019672          188 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL  267 (337)
Q Consensus       188 ~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~  267 (337)
                      -+.-..--.. +.|+|++-.+.+.........+++  +.+-|+++ .+.|.+.-.||.+.||--+...+.-+  .+...+
T Consensus       244 n~lfi~~pre-llv~dle~~~~l~vvpier~~akf--v~vlP~~~-rd~LfclH~nG~ltirvrk~~~~~f~--~~~~~l  317 (1062)
T KOG1912|consen  244 NILFITFPRE-LLVFDLEYECCLAVVPIERGGAKF--VDVLPDPR-RDALFCLHSNGRLTIRVRKEEPTEFK--KPNASL  317 (1062)
T ss_pred             ceEEEEeccc-eEEEcchhhceeEEEEeccCCcce--eEeccCCC-cceEEEEecCCeEEEEEeeccCcccc--ccchhh
Confidence            2222222223 469999988887766433222333  55556655 35899999999999997554222111  011111


Q ss_pred             cccccccceeecccccc-eeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          268 GSILPESVNEVLDPADH-HVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       268 ~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      ..-+..++..+-..... ...-+.+|..  .+.+.+.-++|...+|++..
T Consensus       318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~--~sa~avl~s~g~~~~w~l~~  365 (1062)
T KOG1912|consen  318 SMDLGEQVHVVRPMEEFRPVIGASCPST--PSALAVLYSSGDSTFWQLSN  365 (1062)
T ss_pred             ccccccceEEEeechhcccceeecCCCC--hhhhhhhhhcchhHHHhhhc
Confidence            11222332222221111 0111222222  23455667788888888863

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=7.4e-06  Score=71.14  Aligned_cols=141  Identities=6%  Similarity=0.101  Sum_probs=92.6

Q ss_pred             eEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---------cccCc
Q 019672          106 RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---------HCEAP  176 (337)
Q Consensus       106 ~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~~~  176 (337)
                      ++.+.++..+-+-|+.++-. +.+.+.   ..+.++.+.....++.. |. ..|.|..+|++....         -|.+.
T Consensus       227 hfs~G~sqqv~L~nvetg~~-qsf~sk---sDVfAlQf~~s~nLv~~-Gc-RngeI~~iDLR~rnqG~~~~a~rlyh~Ss  300 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQ-QSFQSK---SDVFALQFAGSDNLVFN-GC-RNGEIFVIDLRCRNQGNGWCAQRLYHDSS  300 (425)
T ss_pred             eecccccceeEEEEeecccc-cccccc---hhHHHHHhcccCCeeEe-cc-cCCcEEEEEeeecccCCCcceEEEEcCcc
Confidence            34455577888888887632 233332   24566666554445544 44 589999999986532         13478


Q ss_pred             eEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCce---eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          177 LAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       177 i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |+++..-. ++++|.+.+.+|+ |++||.+--++   +..+..+.....-.-+-..+...   .++++++|...+||.++
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEecc
Confidence            88887665 7788999999998 79999986665   65553221111111123345555   79999999999999998


Q ss_pred             CCcc
Q 019672          253 FAIN  256 (337)
Q Consensus       253 ~~~~  256 (337)
                      .+.-
T Consensus       377 ~ghL  380 (425)
T KOG2695|consen  377 SGHL  380 (425)
T ss_pred             cCce
Confidence            6543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.14  E-value=0.0016  Score=57.13  Aligned_cols=181  Identities=14%  Similarity=0.217  Sum_probs=113.0

Q ss_pred             EEEEcCCCCEEEEEcCC-----c-eEEEeCC-CCcEEEEEeeCCEE--EEEEccCCCEEEEEeCCCC--C---------C
Q 019672           12 FVSFNQDNSGFALSTKD-----G-FKIFDSS-TGRLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQ--P---------S   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~-----g-~~vw~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~--~---------~   71 (337)
                      .-.|++||++|.+..++     | +-|||.. +.+.+-++..+++.  -+.+.++...+++.-||-.  |         .
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            35799999999887553     3 4899998 55666666554443  1334556656666555422  1         1


Q ss_pred             CCCceEEEEECCCCCEEEEEEcC----C-ceeEEEEcCCeEEEEE---CC-------eEEEEECCCCeeeeeecCCCC--
Q 019672           72 LSPRRLCLFNTTTGTALRELNFL----T-SILAVRLNKKRLVIVL---RE-------KTYIYDANTLAILDTIDTVPN--  134 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~----~-~v~~i~~~~~~~~v~~---d~-------~i~i~d~~~~~~~~~~~~~~~--  134 (337)
                      ..+-.+.+-|..+|+.+.+...+    . .|.-++++.++.++..   .+       -+.+++-.  +.+..+..+..  
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHH
Confidence            34456788889999988775542    2 6777888887766654   11       24444433  22333322211  


Q ss_pred             ---CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCc
Q 019672          135 ---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGT  197 (337)
Q Consensus       135 ---~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~  197 (337)
                         ...+-+++.++++.++++++- .-|.+.+||..+++.+..   ..+..++-.+++ +++|.+ .|.
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSP-RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECC-CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-Ccc
Confidence               123446666677777776664 578999999999987654   556777777776 565544 454

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.12  E-value=0.00051  Score=58.77  Aligned_cols=140  Identities=11%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             CCeEEEEECCCCeeeeeecCCCC----CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc-------ccccCceEEE
Q 019672          112 REKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-------SHCEAPLAAI  180 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-------~~~~~~i~~~  180 (337)
                      .+.|.+|..........++....    .....++.+++-+..+++..  .+|.+.+-+.....       ..|+.++.-+
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta  171 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTA  171 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeee
Confidence            67888887654433333322111    11123334444444566655  47888855443322       2345778888


Q ss_pred             EeCC-CCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          181 VLSS-NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       181 ~~s~-dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      .|+. +.+.+.+|++||. +.-||++ .++.+..-.+ .|..-|.++.=||...  .++++|+-|..|++||.+.-.+|
T Consensus       172 ~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGS-LSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             ecccCCCceEEecCCCce-EEEEEecCCcceeeecce-eeecceEEEecCCCCC--ceEEEeccccceeeeehhcccCc
Confidence            8876 4468889999998 5899999 3444433111 2344588887775533  39999999999999998754443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.12  E-value=0.0018  Score=58.35  Aligned_cols=215  Identities=15%  Similarity=0.153  Sum_probs=119.1

Q ss_pred             ceEEEeCCCCcEEEEEeeC--C--EEEEEEccCC-----CEEEEEeCCC----CCCCCCceEEEEECCCC-------CEE
Q 019672           29 GFKIFDSSTGRLCYERAVG--A--FSIVEMLYSS-----SLLAIVGAGE----QPSLSPRRLCLFNTTTG-------TAL   88 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~~~~--~--~~~~~~~~~~-----~~~~~~~~g~----~~~~~d~~v~iwd~~~~-------~~~   88 (337)
                      .+++.|..+.+.+......  +  .....+.+..     .-++++|.+-    .+....|.|.++++...       +.+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            3688888888776544331  1  1122233232     3344444331    11112389999999884       234


Q ss_pred             EEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE--E
Q 019672           89 RELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--N  165 (337)
Q Consensus        89 ~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~--d  165 (337)
                      .+...+++|.++..-.++++++..+.|.+|++...+ ....-. ...+..++++...++  +++++..  ...+.++  +
T Consensus        83 ~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~-~~~~~~i~sl~~~~~--~I~vgD~--~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAF-YDSPFYITSLSVFKN--YILVGDA--MKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEE-E-BSSSEEEEEEETT--EEEEEES--SSSEEEEEEE
T ss_pred             EEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhhe-ecceEEEEEEecccc--EEEEEEc--ccCEEEEEEE
Confidence            456778899999887888888889999999997776 332221 122235566665544  7777663  4556665  4


Q ss_pred             ccCCcc--cc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-------Cc-eeEeeccCCcceeEEEE---Eee
Q 019672          166 VMELHS--HC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-------AT-KSYSFRRGTYPSTIFSL---SFG  228 (337)
Q Consensus       166 ~~~~~~--~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-------~~-~~~~~~~~~~~~~i~~l---~fs  228 (337)
                      ....+.  +.    ...++++.|-+|++.++.+..+|. +.++....       +. .+.....-+....|+++   ++.
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            322211  11    155888888867678999999998 46877652       22 22222111223346666   555


Q ss_pred             cC--CCc---ccEEEEEeCCCcEEEE
Q 019672          229 QS--MQF---QDILVATSSSGSLHVF  249 (337)
Q Consensus       229 ~d--g~~---~~~las~s~dg~v~iw  249 (337)
                      |.  +..   ...++-++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            52  220   0148888899998744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.11  E-value=0.004  Score=62.89  Aligned_cols=270  Identities=16%  Similarity=0.148  Sum_probs=152.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      +..|.++.|-.++..+.+++..| +.+=|.++..... ..-..++...++.++...++++++       ..+|.+- ...
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~-------~~tll~m-T~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG-------RQTLLFM-TKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC-------CcEEEEE-ecc
Confidence            36899999999998888887777 4555877765433 223367777888888899999987       4555443 222


Q ss_pred             CCEEEEEEc------CCceeEEEEcCCeEEE-EECCeEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcC--
Q 019672           85 GTALRELNF------LTSILAVRLNKKRLVI-VLREKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--  154 (337)
Q Consensus        85 ~~~~~~~~~------~~~v~~i~~~~~~~~v-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--  154 (337)
                      -.++.+...      .+....+-|-.....+ +..++....+... .+....+..+.   .-..+++-+|+.++|+..  
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~---~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD---HKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc---CCceEEEccCCcEEEEEEEe
Confidence            233322211      1122223332211111 1111111111100 01111111111   124567778888888732  


Q ss_pred             CCCc-cEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEe---CCCcEEEEEEcCCCceeEee--ccCCcceeEE
Q 019672          155 STTK-GSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSF--RRGTYPSTIF  223 (337)
Q Consensus       155 ~~~d-g~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s---~dg~~i~vwd~~~~~~~~~~--~~~~~~~~i~  223 (337)
                      +..+ ..|+|||-. +...+     .+.=.+++|-|.|.++|+--   +|+. |.+|.- +|-.-..|  +......+|.
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffEr-NGL~hg~f~l~~p~de~~ve  293 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFER-NGLRHGEFVLPFPLDEKEVE  293 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEec-CCccccccccCCcccccchh
Confidence            1123 789999976 33222     25567899999999999864   3445 457763 34322222  2222223489


Q ss_pred             EEEeecCCCcccEEEE---EeCCCcEEEEecCCCcccCCCCcccccccc--cccccceeecccccceeeeeccCCCcccC
Q 019672          224 SLSFGQSMQFQDILVA---TSSSGSLHVFSPGFAINQRRGGRTSSILGS--ILPESVNEVLDPADHHVLRNAFPAGVKRA  298 (337)
Q Consensus       224 ~l~fs~dg~~~~~las---~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  298 (337)
                      .++|+.++.   .||+   ......|++|-+..-         ..|+..  ..|....-+|++...             .
T Consensus       294 ~L~Wns~sd---iLAv~~~~~e~~~v~lwt~~Ny---------hWYLKq~l~~~~~~~~~W~p~~~-------------~  348 (1265)
T KOG1920|consen  294 ELAWNSNSD---ILAVVTSNLENSLVQLWTTGNY---------HWYLKQELQFSQKALLMWDPVTE-------------K  348 (1265)
T ss_pred             eeeecCCCC---ceeeeecccccceEEEEEecCe---------EEEEEEEEeccccccccccCCCc-------------e
Confidence            999999998   8888   444455999986532         122222  123333468888542             5


Q ss_pred             EEEEEEeCCcEEEEEEe
Q 019672          299 SVSVITYNGYFVEYIFS  315 (337)
Q Consensus       299 ~l~~~~~dg~~~~~~~~  315 (337)
                      +|++.+.+|.+.++.+-
T Consensus       349 ~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  349 TLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             eEEEEecCCcEEEEEEE
Confidence            78888888888887763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=2.4e-05  Score=72.01  Aligned_cols=198  Identities=11%  Similarity=0.134  Sum_probs=119.9

Q ss_pred             CCCCCeEEE-EEcCCCCEEEEEcCCceEEEeCCCC-------cEE--EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            5 SSSYPVFFV-SFNQDNSGFALSTKDGFKIFDSSTG-------RLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         5 ~~~~~v~~~-~fs~dg~~la~g~~~g~~vw~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      +|.+.|+.+ +.+...+++.++.++.+++|.+.+.       ...  |..+..++-.+.+..+...+  ++       .|
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~S-------cD  803 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--AS-------CD  803 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--ee-------cc
Confidence            455556555 3455556666666677899987653       112  22233333333333333333  22       48


Q ss_pred             ceEEEEECCCCCEEEEEEc---CC---ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCC--CCCc-eEEEEe
Q 019672           75 RRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV--PNLK-GLCAFS  142 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~--~~~~-~~~~~~  142 (337)
                      +.|.+||.-.++++..+.-   ++   .|.++.--...++++.   ..+++++|-+..+-..+++..  +.|. ..-+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            8999999888877664321   22   3444432234455544   679999999988766665432  3332 233666


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCccccc-Cce----EEEEeCCCCCEEEEEeCCCcEEEE-EEcCCCceeEeecc
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCE-APL----AAIVLSSNGMYIATASEQGTIIRV-FLVSEATKSYSFRR  215 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-~~i----~~~~~s~dg~~lat~s~dg~~i~v-wd~~~~~~~~~~~~  215 (337)
                      ..+.+..+|.+-  ..|.|.+.|.++++.... .|.    ..++ .|..+.||....|.++ -| |..-+|....+.+.
T Consensus       884 Va~~GN~lAa~L--SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl-aVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  884 VADKGNKLAAAL--SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL-AVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             eccCcchhhHHh--cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee-EeeehhcCCeeeeccCC
Confidence            666777888776  489999999999986643 222    2222 3666788888888774 57 98888776555543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.11  E-value=0.005  Score=53.19  Aligned_cols=181  Identities=15%  Similarity=0.106  Sum_probs=110.6

Q ss_pred             CCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc--CCeEEEEECCeEEEEECCCCeeeeeecC--CC
Q 019672           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN--KKRLVIVLREKTYIYDANTLAILDTIDT--VP  133 (337)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~--~~~~~v~~d~~i~i~d~~~~~~~~~~~~--~~  133 (337)
                      .+.+.++..      ..+.|..||..+++. ..+..+. ...+.+.  .+.++++..+.+.++|+.+++.......  ..
T Consensus        11 ~g~l~~~D~------~~~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~   82 (246)
T PF08450_consen   11 DGRLYWVDI------PGGRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG   82 (246)
T ss_dssp             TTEEEEEET------TTTEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred             CCEEEEEEc------CCCEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence            444555554      468999999987654 3345555 5555555  4566677777888889988855433322  12


Q ss_pred             -CCceEEEEeeCCCccEEEEcCCCC----c--cEEEEEEccCCccc--c--cCceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672          134 -NLKGLCAFSPSLNACFLAVPASTT----K--GSVLVYNVMELHSH--C--EAPLAAIVLSSNGMYIATASEQGTIIRVF  202 (337)
Q Consensus       134 -~~~~~~~~~~~~~~~~la~~~~~~----d--g~v~i~d~~~~~~~--~--~~~i~~~~~s~dg~~lat~s~dg~~i~vw  202 (337)
                       .......+..++++.+.++.....    .  |.|..++.. ++..  .  ....+.++|+|||+.|..+......|..+
T Consensus        83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen   83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEE
Confidence             334555677778887666543110    1  667777777 3321  1  16679999999999776554433336777


Q ss_pred             EcCCCce-------eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          203 LVSEATK-------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       203 d~~~~~~-------~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ++.....       +..+..  .....-.+++..+|+   +.++.-..+.|.+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~--~~g~pDG~~vD~~G~---l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPG--GPGYPDGLAVDSDGN---LWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SS--SSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred             eccccccceeeeeeEEEcCC--CCcCCCcceEcCCCC---EEEEEcCCCEEEEECCC
Confidence            8753221       122221  112367899999998   77777788899999965

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.08  E-value=0.0024  Score=61.02  Aligned_cols=187  Identities=17%  Similarity=0.141  Sum_probs=102.0

Q ss_pred             EEEEEcC-CceEEEeCCCCcEEEEEeeCCE------EEEE--EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           21 GFALSTK-DGFKIFDSSTGRLCYERAVGAF------SIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        21 ~la~g~~-~g~~vw~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      .+.+++. ..+.-+|..+++++...+....      ..+.  ........++++.      .++.|.-+|.++|+.+-+.
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~------~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT------FDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec------CCCeEEEEECCCCCEeeee
Confidence            3444444 4467789999988766543211      0000  0111112334443      4889999999999998777


Q ss_pred             EcCCc------ee-EEEEcCCeEEEEE----------CCeEEEEECCCCeeeeeecCCCCCc-----------------e
Q 019672           92 NFLTS------IL-AVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLK-----------------G  137 (337)
Q Consensus        92 ~~~~~------v~-~i~~~~~~~~v~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-----------------~  137 (337)
                      ....+      +. ...+..+.+++..          ++.+..+|..+++.+..+.......                 .
T Consensus       137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG  216 (488)
T ss_pred             cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence            65443      11 1223344455443          4678899999998887765421100                 0


Q ss_pred             -E-EEEeeCCCccEEEEcCCC----------------CccEEEEEEccCCccccc-----CceE------EEEe----CC
Q 019672          138 -L-CAFSPSLNACFLAVPAST----------------TKGSVLVYNVMELHSHCE-----APLA------AIVL----SS  184 (337)
Q Consensus       138 -~-~~~~~~~~~~~la~~~~~----------------~dg~v~i~d~~~~~~~~~-----~~i~------~~~~----s~  184 (337)
                       + ...+.++.+..++++..+                .++.|.-+|+.+++..-+     ....      ...+    .-
T Consensus       217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~  296 (488)
T cd00216         217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK  296 (488)
T ss_pred             CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence             0 011112222334443310                123788889888876522     1110      0011    12


Q ss_pred             CCC---EEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          185 NGM---YIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       185 dg~---~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +|.   .++.++.+|. +...|.++|+.+.+..
T Consensus       297 ~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~  328 (488)
T cd00216         297 DGKPVPAIVHAPKNGF-FYVLDRTTGKLISARP  328 (488)
T ss_pred             CCCeeEEEEEECCCce-EEEEECCCCcEeeEeE
Confidence            343   5777888897 5789999999987664

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.08  E-value=0.0066  Score=58.09  Aligned_cols=227  Identities=15%  Similarity=0.133  Sum_probs=125.4

Q ss_pred             CEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEE-----EE-EEccCCCEEEEEeCCCCCC---CCCceEEEEECCCCCEEE
Q 019672           20 SGFALSTKDG-FKIFDSSTGRLCYERAVGAFS-----IV-EMLYSSSLLAIVGAGEQPS---LSPRRLCLFNTTTGTALR   89 (337)
Q Consensus        20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~~~---~~d~~v~iwd~~~~~~~~   89 (337)
                      ..+.+++.++ +.-+|.++|+++...+.....     +. ........+ +++......   ..++.|...|.++|+.+-
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v-~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLV-IIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEE-EEeccccccccCCCCcEEEEEECCCCceee
Confidence            4566666555 588899999988776543210     10 001112333 333210000   136789999999999887


Q ss_pred             EEEcCCc---------------------ee-EEEEc--CCeEEEEE-CC------------------eEEEEECCCCeee
Q 019672           90 ELNFLTS---------------------IL-AVRLN--KKRLVIVL-RE------------------KTYIYDANTLAIL  126 (337)
Q Consensus        90 ~~~~~~~---------------------v~-~i~~~--~~~~~v~~-d~------------------~i~i~d~~~~~~~  126 (337)
                      ++....+                     +. ...++  .+.+++.+ ++                  .+.-+|..+++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            7654211                     10 12222  34455554 32                  6899999999988


Q ss_pred             eeecCCCCCc---------eEEEEe-eCCCc-cEEEEcCCCCccEEEEEEccCCcccccCce--EEEEeCCCCCEEEEE-
Q 019672          127 DTIDTVPNLK---------GLCAFS-PSLNA-CFLAVPASTTKGSVLVYNVMELHSHCEAPL--AAIVLSSNGMYIATA-  192 (337)
Q Consensus       127 ~~~~~~~~~~---------~~~~~~-~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~~~i--~~~~~s~dg~~lat~-  192 (337)
                      ..++...+..         .+..+. .++.. ..++.+.  .+|.+...|..+++.+-+..+  ..++.+| +...+.+ 
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~~~~~~~~-~~vyv~~~  346 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEVEQPMAYDP-GLVYLGAF  346 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEeeccccccCC-ceEEEccc
Confidence            7765332110         011111 11111 2344444  489999999999987654222  2345555 3322211 


Q ss_pred             ----------------eCCCcEEEEEEcCCCceeEeeccCCcc------eeE--EEEEeecCCCcccEEEEEeCCCcEEE
Q 019672          193 ----------------SEQGTIIRVFLVSEATKSYSFRRGTYP------STI--FSLSFGQSMQFQDILVATSSSGSLHV  248 (337)
Q Consensus       193 ----------------s~dg~~i~vwd~~~~~~~~~~~~~~~~------~~i--~~l~fs~dg~~~~~las~s~dg~v~i  248 (337)
                                      ..+|. +.-.|+.+|+.+.+...+...      .+.  ..++.  .+.   .|.+++.||.|+.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~---~v~~g~~dG~l~a  420 (488)
T cd00216         347 HIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN---LVFAGAADGYFRA  420 (488)
T ss_pred             cccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC---eEEEECCCCeEEE
Confidence                            13455 457788888888776543111      111  11222  345   7899999999999


Q ss_pred             EecCCCcc
Q 019672          249 FSPGFAIN  256 (337)
Q Consensus       249 w~l~~~~~  256 (337)
                      +|.++++.
T Consensus       421 ld~~tG~~  428 (488)
T cd00216         421 FDATTGKE  428 (488)
T ss_pred             EECCCCce
Confidence            99988764

The alignment model contains an 8-bladed beta-propeller.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=0.0014  Score=60.83  Aligned_cols=229  Identities=16%  Similarity=0.205  Sum_probs=135.9

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~   89 (337)
                      -..||.|++++|--..+++.||+..+..++-..  ...++...++++-++.+|+=+-..+  ...-++.|-.+-+++.++
T Consensus       310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~--~~parvtL~evPs~~~iR  387 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN--NIPARVTLMEVPSKREIR  387 (698)
T ss_pred             eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc--CCcceEEEEecCccceee
Confidence            358999999999888899999998875544322  2345555566666777776654211  234567777777777666


Q ss_pred             EEEcCCceeE--EEE--cCCeEEEEECC-----------eEEEEECCCCee-eeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           90 ELNFLTSILA--VRL--NKKRLVIVLRE-----------KTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        90 ~~~~~~~v~~--i~~--~~~~~~v~~d~-----------~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      +-... .|.+  +.|  +++++++-.|.           .+.|+.++.... +..+..   ...+.++++.|.+..+++-
T Consensus       388 t~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  388 TKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             eccce-eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeeccCCCeEEEE
Confidence            54322 2322  334  34555554421           344555543321 112221   1235667766666555433


Q ss_pred             -CCCCccEEEEEEccCC-cc---c---ccCceEEEEeCCCCCEEEEEeC---CCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          154 -ASTTKGSVLVYNVMEL-HS---H---CEAPLAAIVLSSNGMYIATASE---QGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       154 -~~~~dg~v~i~d~~~~-~~---~---~~~~i~~~~~s~dg~~lat~s~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                       |.....++.+|-+.+. ..   +   .+...+.+-|+|.|+++|.+.-   .|. +..+|+....... .....| ...
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~-~~~~eh-~~a  540 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKD-TASPEH-FAA  540 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhh-ccCccc-ccc
Confidence             3224567889988732 11   1   1266889999999999988754   455 5788986422211 111111 225


Q ss_pred             EEEEeecCCCcccEEEEEeCCCc------EEEEecC
Q 019672          223 FSLSFGQSMQFQDILVATSSSGS------LHVFSPG  252 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~------v~iw~l~  252 (337)
                      +.+.|.|.|+   |+.++|.-..      -+||+.+
T Consensus       541 t~veWDPtGR---YvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  541 TEVEWDPTGR---YVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             ccceECCCCC---EEEEeeehhhhccccceEEEEee
Confidence            6789999999   9999887543      4566654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.01  E-value=0.0074  Score=51.88  Aligned_cols=158  Identities=12%  Similarity=0.135  Sum_probs=101.3

Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           72 LSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      +....|+.+|+.+++...+...+...  -.+...++.+...+  ++...+||..+.+.+.++.-..+.-++   +.+ ..
T Consensus        65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGL---t~d-g~  140 (264)
T PF05096_consen   65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGL---TSD-GK  140 (264)
T ss_dssp             TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EE---EEC-SS
T ss_pred             CCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCcceEE---EcC-CC
Confidence            34678999999999998888877755  44777788888888  889999999999999888665444444   333 23


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--  215 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~--  215 (337)
                      .++.+-|   ...+..+|..+.+...+          ..++-+.+- +|...|-.=.... |-.-|..+|+.+..+..  
T Consensus       141 ~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~-I~~Idp~tG~V~~~iDls~  215 (264)
T PF05096_consen  141 RLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR-IVRIDPETGKVVGWIDLSG  215 (264)
T ss_dssp             CEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE-EEEEETTT-BEEEEEE-HH
T ss_pred             EEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe-EEEEeCCCCeEEEEEEhhH
Confidence            4455544   46799999887655432          456667664 6766665555444 45678899987654420  


Q ss_pred             -------CC----cceeEEEEEeecCCCcccEEEEE
Q 019672          216 -------GT----YPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       216 -------~~----~~~~i~~l~fs~dg~~~~~las~  240 (337)
                             ..    .....+.+|+.|..+  .+++||
T Consensus       216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~--~l~vTG  249 (264)
T PF05096_consen  216 LRPEVGRDKSRQPDDDVLNGIAYDPETD--RLFVTG  249 (264)
T ss_dssp             HHHHHTSTTST--TTS-EEEEEEETTTT--EEEEEE
T ss_pred             hhhcccccccccccCCeeEeEeEeCCCC--EEEEEe
Confidence                   00    123489999998887  244444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.01  E-value=0.00088  Score=63.84  Aligned_cols=221  Identities=11%  Similarity=0.132  Sum_probs=128.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCC----cE--E---------EEEeeCCEEEEEEccCCCEEEEEeCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG----RL--C---------YERAVGAFSIVEMLYSSSLLAIVGAGE   68 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~----~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~   68 (337)
                      +....+.|++||....++|+|+.+|. +|--+++.    +.  +         ...++|...+.-..++.+..-+.+.. 
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD-   90 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD-   90 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC-
Confidence            44567899999999999999999996 88865432    11  0         11223333333334444333333321 


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEE---cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeee-eecCCCCCceEEEE
Q 019672           69 QPSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCAF  141 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~  141 (337)
                          .+|-|.+|=+-.|....++.   -.+-|.+++|+.++  +.++. ||.|.+=.+...+.-. .++.    .-+..+
T Consensus        91 ----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~hv  162 (1189)
T KOG2041|consen   91 ----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLAHV  162 (1189)
T ss_pred             ----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----heccce
Confidence                48899999887775443321   12457778886543  44443 7776665554332211 1111    011222


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCccc--cc--------------CceEEEEe--------CCCCCEEEEEeCCCc
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSH--CE--------------APLAAIVL--------SSNGMYIATASEQGT  197 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--~~--------------~~i~~~~~--------s~dg~~lat~s~dg~  197 (337)
                      .+++|...+.+.-  ..|.+.+||.+.....  +.              ..|..+.|        -||-..||.+-..|.
T Consensus       163 ~ws~D~~~~Lf~~--ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr  240 (1189)
T KOG2041|consen  163 LWSEDLEQALFKK--ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR  240 (1189)
T ss_pred             eecccHHHHHhhh--cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence            3445555544443  4789999998653221  10              22444554        358888999999887


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                       +.|-.-.+......+..+   ..|....|+++|.   +||+++.+
T Consensus       241 -~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~---vLAvcG~~  279 (1189)
T KOG2041|consen  241 -MQIMRSENDPEPVVVDTG---MKIVGAKWNHNGA---VLAVCGND  279 (1189)
T ss_pred             -ehhhhhcCCCCCeEEecc---cEeecceecCCCc---EEEEccCc
Confidence             466544433333333332   3578899999999   99999887

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.00  E-value=0.0001  Score=70.16  Aligned_cols=153  Identities=11%  Similarity=0.138  Sum_probs=101.6

Q ss_pred             ceeEEEEcC----CeEEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccC
Q 019672           96 SILAVRLNK----KRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVME  168 (337)
Q Consensus        96 ~v~~i~~~~----~~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~  168 (337)
                      .|..+.|++    +.-+|.+ ..+..+|++... .....+..+.+..++..+.++|... .+|+++  .|-.|..||+++
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rS  146 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRS  146 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc--ccccceeeeccC
Confidence            355555653    3444444 456778988432 1122344456667788877766543 567776  588999999998


Q ss_pred             Ccccc------cCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCc-eeEeeccCCcceeEEEEEeecCCCcccEEEEE
Q 019672          169 LHSHC------EAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       169 ~~~~~------~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~  240 (337)
                      .....      ...-..|+|+- ++..+|+  ..|..|++||++.|. .+..++.  +.+.|++++|..--.  ..+.+.
T Consensus       147 p~~p~ys~~~w~s~asqVkwnyk~p~vlas--shg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~--s~~~s~  220 (1081)
T KOG0309|consen  147 PHRPFYSTSSWRSAASQVKWNYKDPNVLAS--SHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKY--SEIMSS  220 (1081)
T ss_pred             CCcceeeeecccccCceeeecccCcchhhh--ccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhh--hhhccc
Confidence            76432      25667788886 5555554  345568999998765 4555543  466789999875432  268899


Q ss_pred             eCCCcEEEEecCCCcc
Q 019672          241 SSSGSLHVFSPGFAIN  256 (337)
Q Consensus       241 s~dg~v~iw~l~~~~~  256 (337)
                      +.|++|++||.++..+
T Consensus       221 ~~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  221 SNDGTVKFWDYSKSTT  236 (1081)
T ss_pred             CCCCceeeeccccccc
Confidence            9999999999876544

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.00  E-value=0.0056  Score=52.44  Aligned_cols=152  Identities=13%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             eeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCC-----CceEEEEeeCC-----C--ccEEEEcCCCCccEE
Q 019672           97 ILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSL-----N--ACFLAVPASTTKGSV  161 (337)
Q Consensus        97 v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~--~~~la~~~~~~dg~v  161 (337)
                      -+.++|+++..+++.   .|+|++||+.. ..+..+.....     ...+..+.+-+     .  ..+++. .+  .|.+
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y--~G~L  121 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NY--RGQL  121 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEE-ec--ccee
Confidence            467889998766654   67999999965 33444432111     01222222211     1  123333 32  5777


Q ss_pred             EEEEccCC-----ccccc--------CceEEEEeCCCCCEEEEEeCC-Cc---------EEEEEEcCCCceeEe------
Q 019672          162 LVYNVMEL-----HSHCE--------APLAAIVLSSNGMYIATASEQ-GT---------IIRVFLVSEATKSYS------  212 (337)
Q Consensus       162 ~i~d~~~~-----~~~~~--------~~i~~~~~s~dg~~lat~s~d-g~---------~i~vwd~~~~~~~~~------  212 (337)
                      +-|-+..+     +..|.        ..|+++.++|.-++|+.|+.. ..         -+--|-+-++..-+.      
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~  201 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSE  201 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccC
Confidence            76665322     11121        689999999998877776531 11         023565544332110      


Q ss_pred             --------------e-------ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          213 --------------F-------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       213 --------------~-------~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                                    +       +.+.....|..|..||||+   +||+...+|.|.+|++..-.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  202 DDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccccccccccceeeccceeeeeccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcch
Confidence                          0       0111233489999999999   99999999999999997644

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.94  E-value=0.0084  Score=52.62  Aligned_cols=210  Identities=16%  Similarity=0.197  Sum_probs=120.0

Q ss_pred             CCCCEEEEEcCCceEEEeC-CCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE------
Q 019672           17 QDNSGFALSTKDGFKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR------   89 (337)
Q Consensus        17 ~dg~~la~g~~~g~~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~------   89 (337)
                      ..++.|++|+++|+.+|+. ...+.....+...+..+.+...-+.+++.+        |++|.++++..-....      
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccccccc
Confidence            4678899999999999988 333333333334477777777778777765        5799999976543322      


Q ss_pred             ---------EEEcCCceeEEE----Ec-CCeEEEEECCeEEEEECCCC-----eeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           90 ---------ELNFLTSILAVR----LN-KKRLVIVLREKTYIYDANTL-----AILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        90 ---------~~~~~~~v~~i~----~~-~~~~~v~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                               .+.....+..++    .. ...++++...+|.+|.....     +..+++..+..+..+   .+.++  .+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i---~~~~~--~i  151 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSI---AFLGN--KI  151 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEE---EEeCC--EE
Confidence                     111222344333    11 22455566889998877542     466777665544333   33333  55


Q ss_pred             EEcCCCCccEEEEEEccCCcccc-----------------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC-----------------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--  211 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~-----------------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~--  211 (337)
                      +.+.   .....+.|+.++....                 ..++..+.++. +.+|++-.+-|  + ..|. .|+...  
T Consensus       152 ~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~~~~~g--~-fv~~-~G~~~r~~  223 (275)
T PF00780_consen  152 CVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLCYDNIG--V-FVNK-NGEPSRKS  223 (275)
T ss_pred             EEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEEecceE--E-EEcC-CCCcCccc
Confidence            5543   3457888887553211                 03455555544 46676543322  2 3344 454332  


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .+.-.   ....++++.  ..   ||++-+.+ .|.||++.++..
T Consensus       224 ~i~W~---~~p~~~~~~--~p---yli~~~~~-~iEV~~~~~~~l  259 (275)
T PF00780_consen  224 TIQWS---SAPQSVAYS--SP---YLIAFSSN-SIEVRSLETGEL  259 (275)
T ss_pred             EEEcC---CchhEEEEE--CC---EEEEECCC-EEEEEECcCCcE
Confidence            22211   234566775  34   77776664 599999987743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00031  Score=67.56  Aligned_cols=140  Identities=14%  Similarity=0.191  Sum_probs=95.4

Q ss_pred             ceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc
Q 019672           96 SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE  174 (337)
Q Consensus        96 ~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~  174 (337)
                      .+.+.+++...+...+ +|.+++++.... ....+...         +.+.+|.++++++  .||.|.|..+-+.+..++
T Consensus        41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s---------~~~~~Gey~asCS--~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   41 AISCCAVHDKFFALGTHRGAVYLTTCQGN-PKTNFDHS---------SSILEGEYVASCS--DDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             HHHHHHhhcceeeeccccceEEEEecCCc-cccccccc---------ccccCCceEEEec--CCCcEEEeeccCCcccee
Confidence            4556667777777777 789999987532 21112111         1156788999998  699999998887776653


Q ss_pred             ----CceEEEEeCCC-----CCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          175 ----APLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       175 ----~~i~~~~~s~d-----g~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                          -|+.+++++||     .+.+++|+.-| ++ ++.-.= |.+... ......++|.++.|.  |.   ++|=++++|
T Consensus       109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv-L~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~---lIAWand~G  180 (846)
T KOG2066|consen  109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV-LSERNWLGNKDSV-VLSEGEGPIHSIKWR--GN---LIAWANDDG  180 (846)
T ss_pred             EecCCcceeEEeccchhhhhhhheeecCcce-EE-EehhhhhcCccce-eeecCccceEEEEec--Cc---EEEEecCCC
Confidence                89999999998     56789999888 54 543210 111111 112234679999997  66   888888887


Q ss_pred             cEEEEecCCCcc
Q 019672          245 SLHVFSPGFAIN  256 (337)
Q Consensus       245 ~v~iw~l~~~~~  256 (337)
                       |+|||+.+...
T Consensus       181 -v~vyd~~~~~~  191 (846)
T KOG2066|consen  181 -VKVYDTPTRQR  191 (846)
T ss_pred             -cEEEeccccce
Confidence             89999876543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.93  E-value=0.0096  Score=50.47  Aligned_cols=102  Identities=14%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             CEEEEEcCCc-eEEEeCCCCcEEEEEeeCC-EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           20 SGFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      +++..|+-.+ ++--|..+|++..+...+. +..-.+. -++.+++ +.      ..+.+.+.+.++|.....+..-+.|
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~-GC------y~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVL-GC------YSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEE-EE------ccCcEEEEEecchhheeeeeehhhh
Confidence            4566676665 4777888888877654322 2222222 3444333 33      3678999999999877766554443


Q ss_pred             eE---EEEcCCeEEEEE-CCeEEEEECCCCeeeeee
Q 019672           98 LA---VRLNKKRLVIVL-REKTYIYDANTLAILDTI  129 (337)
Q Consensus        98 ~~---i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~  129 (337)
                      ..   +.++...+.+.+ |++.+..|.++...+...
T Consensus        96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            22   344555555555 788888888776555443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00017  Score=64.98  Aligned_cols=231  Identities=13%  Similarity=0.075  Sum_probs=144.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-C-ceEEEeCCCCcEEEEEeeCC-EEEEEEccCCC----EEEEEeCCCCCCCCCceEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTK-D-GFKIFDSSTGRLCYERAVGA-FSIVEMLYSSS----LLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~-~-g~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~g~~~~~~d~~v~   78 (337)
                      +-..|.+++.+.||.++.+..+ + .+++||+++...+....... -..+++.++++    .++ ++.     +.++.+.
T Consensus        52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IA-Vs~-----~~sg~i~  125 (558)
T KOG0882|consen   52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIA-VSL-----FKSGKIF  125 (558)
T ss_pred             HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEE-eec-----ccCCCcE
Confidence            4456778888999999888665 4 47999998875543222211 12234444443    333 333     3688999


Q ss_pred             EEECCCCCE-EEE--EEcCCceeEEEEcCCeEEEEE---CCeEEEEECCC------Ceeeeeec-------CCCCCceEE
Q 019672           79 LFNTTTGTA-LRE--LNFLTSILAVRLNKKRLVIVL---REKTYIYDANT------LAILDTID-------TVPNLKGLC  139 (337)
Q Consensus        79 iwd~~~~~~-~~~--~~~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~------~~~~~~~~-------~~~~~~~~~  139 (337)
                      ++|-...-+ ..-  --+.++|..+.+++-.-.+.+   .|.|.-|....      .++...+.       .........
T Consensus       126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt  205 (558)
T KOG0882|consen  126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT  205 (558)
T ss_pred             EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence            999765432 221  124568988888765444433   57899998762      11111111       111122235


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc--------------------------------------CceEEEE
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------------------------------------APLAAIV  181 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------------------------------------~~i~~~~  181 (337)
                      ++.++|++..+++-+  .|..|++++.++++..+.                                      ..-..+.
T Consensus       206 s~Efsp~g~qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~  283 (558)
T KOG0882|consen  206 SFEFSPDGAQISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV  283 (558)
T ss_pred             ceEEccccCcccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeE
Confidence            677788888888887  589999999988764321                                      2346788


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC----------------Cccee-------EEEEEeecCCCcccEEE
Q 019672          182 LSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG----------------TYPST-------IFSLSFGQSMQFQDILV  238 (337)
Q Consensus       182 ~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~----------------~~~~~-------i~~l~fs~dg~~~~~la  238 (337)
                      |+..|++|..|+-=|  |+|.++.+++....+.+.                .+.+.       =..+.|-+|-.   +++
T Consensus       284 fdes~~flly~t~~g--ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt---~~c  358 (558)
T KOG0882|consen  284 FDESGNFLLYGTILG--IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPT---IVC  358 (558)
T ss_pred             EcCCCCEEEeeccee--EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCe---EEE
Confidence            999999999999887  699999998876544211                00000       01234556655   777


Q ss_pred             EEeCCCcEEEE
Q 019672          239 ATSSSGSLHVF  249 (337)
Q Consensus       239 s~s~dg~v~iw  249 (337)
                      ++=..+.+++|
T Consensus       359 ~a~kk~rfylf  369 (558)
T KOG0882|consen  359 TAFKKNRFYLF  369 (558)
T ss_pred             eeeecceEEEE
Confidence            77777888888

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.92  E-value=0.0029  Score=60.62  Aligned_cols=154  Identities=7%  Similarity=0.031  Sum_probs=89.5

Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEe---CCC---------------------
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATAS---EQG---------------------  196 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s---~dg---------------------  196 (337)
                      +++..+...+. ..+.+.+.|..+.+...+    .....++++|||+++.+.+   +.|                     
T Consensus       202 nDGk~l~~~~e-y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~  280 (635)
T PRK02888        202 NDGKDLDDPKK-YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR  280 (635)
T ss_pred             CCCCEeecccc-eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH
Confidence            45555443332 568888889887765443    4456788999999988776   211                     


Q ss_pred             ---------------cEEEEEEcCC-----CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          197 ---------------TIIRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       197 ---------------~~i~vwd~~~-----~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                     ..+.+.|..+     .+.+..+.-+   ...+.|++||||++  .++++..+++|.|.|+++.++
T Consensus       281 iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGky--lyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        281 IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKY--FIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCE--EEEeCCCCCcEEEEEChhhhh
Confidence                           1135666665     2334434322   22567899999993  455556689999999987543


Q ss_pred             cCC--CCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          257 QRR--GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       257 ~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      .-.  ........+..         ...-+++   +..+..+++...+.-.|..+.+|+++.
T Consensus       356 ~~~~~~~~~~~vvaev---------evGlGPL---HTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEP---------ELGLGPL---HTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEee---------ccCCCcc---eEEECCCCCEEEeEeecceeEEEehHH
Confidence            110  00000001000         0001111   122344567777888899999999976

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.92  E-value=0.0067  Score=56.82  Aligned_cols=213  Identities=10%  Similarity=0.080  Sum_probs=111.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      .....+++||+|+.+++++++...||.....+......  +.. ..+.. .+..++...       .++|.|+.--.++.
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~--g~~-~vw~~-~n~yAv~~~-------~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS--GLS-FVWSS-RNRYAVLES-------SSTIKIYKNFKNEV  101 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE---SE-EEE-T-SSEEEEE-T-------TS-EEEEETTEE-T
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc--eeE-EEEec-CccEEEEEC-------CCeEEEEEcCcccc
Confidence            34678999999999999888888999865554433322  222 22222 455555543       57899863222233


Q ss_pred             EEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc
Q 019672           88 LRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~  167 (337)
                      ...+..+..+..|.. +.-+.+..++.|.+||..+++.++.+...    .+-.+.+++++.++|..+   +..+.|++..
T Consensus       102 ~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t---~~~i~il~~~  173 (443)
T PF04053_consen  102 VKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT---KDSIYILKYN  173 (443)
T ss_dssp             T-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE----S-SEEEEEE-
T ss_pred             ceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe---CCeEEEEEec
Confidence            334444444555544 55555566778999999999999999753    244556777888988886   4567776543


Q ss_pred             CC--------------ccccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeeccCCcceeEEEEEeec
Q 019672          168 EL--------------HSHCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       168 ~~--------------~~~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~fs~  229 (337)
                      ..              ...++  ..|.+.+|.-|  .++-.+.. + ++-  +..|+.  +..+     ..+++=+.+.|
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkY--l~~Ge~~~i~~l-----d~~~yllgy~~  242 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKY--LVNGETGIIAHL-----DKPLYLLGYLP  242 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEE--EETTEEEEEEE------SS--EEEEEET
T ss_pred             chhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEE--EEcCCcceEEEc-----CCceEEEEEEc
Confidence            22              22332  67888888766  34433333 4 443  444443  2222     23466677887


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..+   .+.....|+.|..+.++.
T Consensus       243 ~~~---~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  243 KEN---RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TTT---EEEEE-TT--EEEEE--H
T ss_pred             cCC---EEEEEECCCCEEEEEECH
Confidence            665   788888888888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.92  E-value=9.5e-05  Score=70.14  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------------------cccCceEEEEeCCCCCEEEEE
Q 019672          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------------------HCEAPLAAIVLSSNGMYIATA  192 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------------------~~~~~i~~~~~s~dg~~lat~  192 (337)
                      ++...+-+++++.+..++|++|  .||.+++..+.+...                    .|.+.|.-+.|+.+.+.|-|.
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            3445677888998889999999  699999987654221                    133789999999999999998


Q ss_pred             eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          193 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..+|- |-||-+..|.-..++......+.|.+++|+.||+   .++..-.||.|-|=.++.
T Consensus        90 Dt~Gl-IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdG  146 (1189)
T KOG2041|consen   90 DTSGL-IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDG  146 (1189)
T ss_pred             CCCce-EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeecc
Confidence            88985 5699999887655554333456799999999999   999999999987766653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.92  E-value=0.0011  Score=57.85  Aligned_cols=226  Identities=10%  Similarity=0.081  Sum_probs=120.7

Q ss_pred             cCCCEEEEEeCCCCCCCCCceEEEEEC-CCCCEEEEE--EcCCceeEEEEcCC--eEEEEE-CCeEEEEECC----CCee
Q 019672           56 YSSSLLAIVGAGEQPSLSPRRLCLFNT-TTGTALREL--NFLTSILAVRLNKK--RLVIVL-REKTYIYDAN----TLAI  125 (337)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~v~iwd~-~~~~~~~~~--~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~----~~~~  125 (337)
                      +..+.++.++       .|+++|||-- ..++.-..+  ..++++.++.+..+  .+++.. .+++.-+.+.    .+..
T Consensus        34 ~~e~gv~~~s-------~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~  106 (404)
T KOG1409|consen   34 PKEEGVISVS-------EDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTF  106 (404)
T ss_pred             cCCCCeEEcc-------ccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcch
Confidence            3345555554       4999999943 333322222  34567888887654  344444 5677776553    2222


Q ss_pred             eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCc--EE
Q 019672          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGT--II  199 (337)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~--~i  199 (337)
                      ++....+  ...+.++-++....++++.+.  |..+.---.+++..+-.    .+-+++.+.-.  +...|-..|.  ..
T Consensus       107 ~r~~~~h--~~~v~~~if~~~~e~V~s~~~--dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~l  180 (404)
T KOG1409|consen  107 LKDYLAH--QARVSAIVFSLTHEWVLSTGK--DKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITML  180 (404)
T ss_pred             hhhhhhh--hcceeeEEecCCceeEEEecc--ccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEE
Confidence            3333222  233445555444457777773  44443322333332211    11112222111  2223322332  23


Q ss_pred             EEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeec
Q 019672          200 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  279 (337)
Q Consensus       200 ~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w  279 (337)
                      |+. ...-..+.++..  +...|++++|.|..+   .|.+|+.|..|-+||+.-.+..       .+......+.+..+|
T Consensus       181 r~~-~~~~~~i~~~~~--h~~~~~~l~Wd~~~~---~LfSg~~d~~vi~wdigg~~g~-------~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  181 KLE-QNGCQLITTFNG--HTGEVTCLKWDPGQR---LLFSGASDHSVIMWDIGGRKGT-------AYELQGHNDKVQALS  247 (404)
T ss_pred             EEe-ecCCceEEEEcC--cccceEEEEEcCCCc---EEEeccccCceEEEeccCCcce-------eeeeccchhhhhhhh
Confidence            333 234456666643  466799999999988   9999999999999998644321       111111112222222


Q ss_pred             ccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          280 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      ...-             ..++++...||.+..|+++....+
T Consensus       248 ~~~~-------------t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  248 YAQH-------------TRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             hhhh-------------heeeeeccCCCeEEEEeccceeec
Confidence            2211             268999999999999999766444

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.0045  Score=59.36  Aligned_cols=183  Identities=15%  Similarity=0.113  Sum_probs=106.1

Q ss_pred             EEcCCCCEEEEEcC-Cc-eEEEeCCCCcEEEEEeeCC-EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           14 SFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        14 ~fs~dg~~la~g~~-~g-~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      -+.|||+.+..-++ .+ +.+.|.++.+...+....+ ...+.+.++...+...+....   ...++..-+......+..
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCceEEE
Confidence            45678876644333 22 4677888777666544322 234455665555544431100   112333333222221111


Q ss_pred             EEcCCceeEEEEcCCeEEEEECCeEEEEECCC-----CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672           91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANT-----LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus        91 ~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      +.... +..+.-+++...+ .+++|.+.|.++     .+.+..+..+..|.++   ..+||+.++++++. .+.+|.|+|
T Consensus       276 fni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV---~vSPDGkylyVank-lS~tVSVID  349 (635)
T PRK02888        276 FNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV---NTSPDGKYFIANGK-LSPTVTVID  349 (635)
T ss_pred             EchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccce---EECCCCCEEEEeCC-CCCcEEEEE
Confidence            11110 0011112233333 467899999988     5677778777776665   56688889888886 689999999


Q ss_pred             ccCCcccc------------c----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          166 VMELHSHC------------E----APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       166 ~~~~~~~~------------~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +.+.+...            +    ..-...+|+++|+...|---|..+ -.||+.+
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv-~kwn~~~  405 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI-VKWNIEA  405 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeeccee-EEEehHH
Confidence            98866411            1    233567899999988888888875 5799876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.84  E-value=0.0022  Score=57.79  Aligned_cols=168  Identities=13%  Similarity=0.157  Sum_probs=102.3

Q ss_pred             ceEEEEECCCCCEEEEEEcCC--ceeEE---EEcC------CeEEEEE----------C-CeEEEEECCCC----eeeee
Q 019672           75 RRLCLFNTTTGTALRELNFLT--SILAV---RLNK------KRLVIVL----------R-EKTYIYDANTL----AILDT  128 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~--~v~~i---~~~~------~~~~v~~----------d-~~i~i~d~~~~----~~~~~  128 (337)
                      ..|++.|..+.+.+.++.+..  .+.++   .+..      ..+++++          . |.|.+|++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            368899998888887776544  45444   3432      3344443          1 78999999873    12222


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc-cccc------CceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCE------APLAAIVLSSNGMYIATASEQGTIIRV  201 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~v  201 (337)
                      +....-...+.++..-. +.+++..|    +.|.+|++...+ ....      ..+.++..  .+++|+.|.....+ .+
T Consensus        82 i~~~~~~g~V~ai~~~~-~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv-~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN-GRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV-SL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEET-TEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE-EE
T ss_pred             EEEEeecCcceEhhhhC-CEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCE-EE
Confidence            21111233466777653 33555443    689999998776 3321      34455544  45688888876653 56


Q ss_pred             EEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          202 FLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       202 wd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +..+ .+..+..+.+...+..++++.|-+|+.   .++++..+|.++++....
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-S
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEECC
Confidence            5443 244455554444455689999987777   899999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.78  E-value=0.022  Score=49.93  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=115.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEE---------------E-eeCCEEEEE--EccCCCEEEEEeCCCC
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE---------------R-AVGAFSIVE--MLYSSSLLAIVGAGEQ   69 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~---------------~-~~~~~~~~~--~~~~~~~~~~~~~g~~   69 (337)
                      .+|..+..-|+-+.|++=++..+.++++........               . ...++...+  -.........+..   
T Consensus        36 ~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~---  112 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV---  112 (275)
T ss_pred             ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE---
Confidence            348999999998888877777789998766543321               1 112233222  1122233333332   


Q ss_pred             CCCCCceEEEEECCCC-----CEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCC----------
Q 019672           70 PSLSPRRLCLFNTTTG-----TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN----------  134 (337)
Q Consensus        70 ~~~~d~~v~iwd~~~~-----~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~----------  134 (337)
                          .++|.+|.+..+     +...++..+..+..+.|.++.++++..+...+.|+.++.....+.....          
T Consensus       113 ----kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~  188 (275)
T PF00780_consen  113 ----KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS  188 (275)
T ss_pred             ----CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence                569999887543     5678888999999999999999999988999999987654333221111          


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      ...+..+..+. +.+|.+-    +..-...|.. ++...      .....++++..  .+|+.-+.++  |.||++.+++
T Consensus       189 ~~~~~~~~~~~-~e~Ll~~----~~~g~fv~~~-G~~~r~~~i~W~~~p~~~~~~~--pyli~~~~~~--iEV~~~~~~~  258 (275)
T PF00780_consen  189 SKPLGIFQLSD-NEFLLCY----DNIGVFVNKN-GEPSRKSTIQWSSAPQSVAYSS--PYLIAFSSNS--IEVRSLETGE  258 (275)
T ss_pred             CCceEEEEeCC-ceEEEEe----cceEEEEcCC-CCcCcccEEEcCCchhEEEEEC--CEEEEECCCE--EEEEECcCCc
Confidence            11222333322 3344432    2222233332 22221      25566777743  4777777654  6999999999


Q ss_pred             eeEeec
Q 019672          209 KSYSFR  214 (337)
Q Consensus       209 ~~~~~~  214 (337)
                      +++.+.
T Consensus       259 lvQ~i~  264 (275)
T PF00780_consen  259 LVQTIP  264 (275)
T ss_pred             EEEEEE
Confidence            988875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.026  Score=52.69  Aligned_cols=201  Identities=15%  Similarity=0.236  Sum_probs=103.2

Q ss_pred             EEEcCCCCEEEEEcCC------------ceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672           13 VSFNQDNSGFALSTKD------------GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus        13 ~~fs~dg~~la~g~~~------------g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ++..|.|..+|.-.+.            .+.||+.. |+++...  +.+.+....+.. ...++++.       .||.++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~LvvV~-------~dG~v~  104 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEELVVVQ-------SDGTVR  104 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCeEEEEE-------cCCEEE
Confidence            4556777777766555            46788865 4444433  223333344433 33445554       389999


Q ss_pred             EEECCCCCEEEEEEcCC-----ce-----eEEEEcCCeEEEEE-CCeEEEEEC-CCCeeeeeecC-CC---------CCc
Q 019672           79 LFNTTTGTALRELNFLT-----SI-----LAVRLNKKRLVIVL-REKTYIYDA-NTLAILDTIDT-VP---------NLK  136 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~-----~v-----~~i~~~~~~~~v~~-d~~i~i~d~-~~~~~~~~~~~-~~---------~~~  136 (337)
                      ++|+. |+.  ++....     .|     ..+.+.++++++.+ ++.+.+.+- ......+.+.. +.         ...
T Consensus       105 vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~  181 (410)
T PF04841_consen  105 VYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT  181 (410)
T ss_pred             EEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence            99986 333  222211     22     22344456776665 555544422 21111111110 00         000


Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      .+..+  +.+....+...  .++.+.+.+-...+.+ ..+++..+++||+|++||.-..+|. +.|.+..-.+.+.++..
T Consensus       182 ~i~~l--~~~~~~~i~~~--~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  182 VIPLL--SSDRVVEILLA--NGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             cceEe--ecCcceEEEEe--cCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEeec
Confidence            01111  12222222222  2455665554332222 2378999999999999999999998 46877665566666644


Q ss_pred             CCcceeEEEEEeecCC
Q 019672          216 GTYPSTIFSLSFGQSM  231 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg  231 (337)
                      +. ......|.|.-++
T Consensus       257 ~~-~~~p~~~~WCG~d  271 (410)
T PF04841_consen  257 DS-KSPPKQMAWCGND  271 (410)
T ss_pred             Cc-CCCCcEEEEECCC
Confidence            31 2234566666544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.0064  Score=59.31  Aligned_cols=197  Identities=14%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             EEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEcc---CCCEEEEEeCCCCCCCCCceEEEEECCCC---C
Q 019672           14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLY---SSSLLAIVGAGEQPSLSPRRLCLFNTTTG---T   86 (337)
Q Consensus        14 ~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~d~~v~iwd~~~~---~   86 (337)
                      .|++.+..++.|+.+| +.++| ...+.++..+.....++...+   ..+.++.++-+..+  ..-.|+|||++.-   .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCC--CceEEEEecccccCCCC
Confidence            3568888899999887 44444 233444554443333444433   33455555533211  1237999998632   2


Q ss_pred             -EEEE-----EE--c---CCceeEEEEcCCeE-EEEE--CCeEEEEE--CCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           87 -ALRE-----LN--F---LTSILAVRLNKKRL-VIVL--REKTYIYD--ANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        87 -~~~~-----~~--~---~~~v~~i~~~~~~~-~v~~--d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                       +.+.     ++  .   +.++..++++.+-. ++++  +|.|..+.  +-..+-.+....+.....++++....++..+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence             2221     11  2   23667777766533 3333  78888873  2111111222222233344544443333331


Q ss_pred             EEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      .+..  +...|.+|.+......+      ..+++|.+|++.-..+++++..+  +.+||....+.-..|..|+
T Consensus       187 lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  187 LFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             EEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeecCCC
Confidence            1111  24569999988444111      17789999998666566666554  6899998766666676443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0021  Score=63.59  Aligned_cols=128  Identities=16%  Similarity=0.237  Sum_probs=88.5

Q ss_pred             CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-------CCccEEEEcCCCCccEEEEEEccCCc--ccc--------c
Q 019672          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-------LNACFLAVPASTTKGSVLVYNVMELH--SHC--------E  174 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~dg~v~i~d~~~~~--~~~--------~  174 (337)
                      .+.++-.||..|+.+..+..+.+.. +..+.++       +...++..    .+..+..||.+-..  .+.        .
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEE----CCCceEEeccCCCCCceeeccccccccC
Confidence            3578899999999999988765432 5566653       22233333    26779999987532  221        1


Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ...+|++-+.+| +||.||.+|. ||+||- .|+.-++.-.+ -..+|..|..+.||+   |+++++. ..+-|++..
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGk---wilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGK---WILATCK-TYLLLIDTL  647 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCc---EEEEeec-ceEEEEEEe
Confidence            668899988887 6899999998 799994 45443433223 246799999999999   7776654 467787753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.69  E-value=0.0093  Score=59.22  Aligned_cols=126  Identities=13%  Similarity=0.322  Sum_probs=84.3

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC--ceeEEEEc-------CCeEEEEE-CCeEEEEECCCCe--eeee-ecCCCCCceEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLN-------KKRLVIVL-REKTYIYDANTLA--ILDT-IDTVPNLKGLC  139 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~-------~~~~~v~~-d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~  139 (337)
                      .++.|.-.|+++|+.+.++.++.  +|..+.-+       +...+++. ++.++.||.+-..  ++.. ...........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            46889999999999999998876  35666442       33344444 7899999997532  2211 11111112345


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                      |++...+| ++|+++  .+|.|++||-. ++...+      .||..|..+.||++|++.+..-  +-|+++
T Consensus       582 ~~aTt~~G-~iavgs--~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty--LlLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGS--NKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCKTY--LLLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEe--CCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeecce--EEEEEE
Confidence            66666665 667776  58999999943 332222      8999999999999998877653  347775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.63  E-value=0.0028  Score=59.38  Aligned_cols=208  Identities=12%  Similarity=0.115  Sum_probs=96.9

Q ss_pred             EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEc-CCeEEEEE-CCeEEEE-ECCCCeeeee
Q 019672           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN-KKRLVIVL-REKTYIY-DANTLAILDT  128 (337)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~-d~~i~i~-d~~~~~~~~~  128 (337)
                      +...++...+++++        |+.-.|+.....+....    ++-..+.|. ++.+++.. .++|.|+ ++ +.+....
T Consensus        38 ls~npngr~v~V~g--------~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~-~~~~~k~  104 (443)
T PF04053_consen   38 LSHNPNGRFVLVCG--------DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNF-KNEVVKS  104 (443)
T ss_dssp             EEE-TTSSEEEEEE--------TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETT-EE-TT--
T ss_pred             EEECCCCCEEEEEc--------CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcC-ccccceE
Confidence            34445556665543        56778877443332221    222334454 45555555 5789996 33 2222234


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~  205 (337)
                      +..+.....+..      |.+|+..+   ++.|.+||+.+++.+.+   .+|..+.||++|+++|-.+.+..  .|++..
T Consensus       105 i~~~~~~~~If~------G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i--~il~~~  173 (443)
T PF04053_consen  105 IKLPFSVEKIFG------GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSI--YILKYN  173 (443)
T ss_dssp             ---SS-EEEEE-------SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SE--EEEEE-
T ss_pred             EcCCcccceEEc------CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeE--EEEEec
Confidence            544333334433      55676665   45899999999987765   55899999999999999998863  465543


Q ss_pred             CC--------------ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc-CCCCccccccccc
Q 019672          206 EA--------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ-RRGGRTSSILGSI  270 (337)
Q Consensus       206 ~~--------------~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~-~~~~~~~~~~~~~  270 (337)
                      ..              +.+.++     ...|.+.+|..| -   ++.+...  .++-+  -.+... .......-|+.++
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~---fiYtT~~--~lkYl--~~Ge~~~i~~ld~~~yllgy  240 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-C---FIYTTSN--HLKYL--VNGETGIIAHLDKPLYLLGY  240 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-E---EEEE-TT--EEEEE--ETTEEEEEEE-SS--EEEEE
T ss_pred             chhcccccccCchhceEEEEEe-----cceeEEEEEEcC-E---EEEEcCC--eEEEE--EcCCcceEEEcCCceEEEEE
Confidence            22              222221     234777778765 3   5555544  45442  111100 0000000111111


Q ss_pred             ccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          271 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       271 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      +                       ++.++++....|+.+..+.++...-
T Consensus       241 ~-----------------------~~~~~ly~~Dr~~~v~~~~ld~~~~  266 (443)
T PF04053_consen  241 L-----------------------PKENRLYLIDRDGNVISYELDLSEL  266 (443)
T ss_dssp             E-----------------------TTTTEEEEE-TT--EEEEE--HHHH
T ss_pred             E-----------------------ccCCEEEEEECCCCEEEEEECHHHH
Confidence            1                       1237899999999999999887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.01  Score=53.13  Aligned_cols=234  Identities=9%  Similarity=0.058  Sum_probs=122.1

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEc-CCceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNS-GFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~-~la~g~-~~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+..-|..++|+|..+ ++..++ ++.++|.|+++......... ..+..+++.-+....+++|.      ..|.|.++|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD  264 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYD  264 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEE
Confidence            3455689999999888 444444 45679999998876654433 33444555555556667765      588999999


Q ss_pred             CCCCCEE-EEEEc---CCceeEEE-------EcCCeEEEEECCeEEEEECCCC--eeeeeecCCCCCceEEEEeeCCCc-
Q 019672           82 TTTGTAL-RELNF---LTSILAVR-------LNKKRLVIVLREKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNA-  147 (337)
Q Consensus        82 ~~~~~~~-~~~~~---~~~v~~i~-------~~~~~~~v~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-  147 (337)
                      ++..+-. .++..   ..+|..|+       |...+++++.--....|++.-.  -.....+. .++.....+..++-. 
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN  343 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence            9865422 22211   12344333       2334555555555566665321  11111111 111122233332211 


Q ss_pred             cEEEEcCCC---------------CccEEEEEEccCCc---cccc-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          148 CFLAVPAST---------------TKGSVLVYNVMELH---SHCE-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       148 ~~la~~~~~---------------~dg~v~i~d~~~~~---~~~~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      ..|++.-++               .|| -.||--+...   ...+ ..-..+.-.++.++|+.-+.+.+-+.+||..+++
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            122221110               011 1222221111   0000 1112222345667777666555557899999999


Q ss_pred             eeEeeccCCcceeEEEEEeec-CCCcccEEEEEeCCCcEEEEecC
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .++++..   ..+|..++... +|.  .+|++-. |..+|||..+
T Consensus       423 vvQ~l~~---~epv~Dicp~~~n~~--syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  423 VVQTLAL---SEPVLDICPNDTNGS--SYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeeccc---CcceeecceeecCCc--chhhhee-cceEEEEecC
Confidence            9998853   35677776553 333  2666655 5589998754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.59  E-value=0.00036  Score=66.61  Aligned_cols=292  Identities=10%  Similarity=0.042  Sum_probs=157.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCC-Cc---EEEEEeeCCEEEEEEccCC-CEEEEEeCCCCCCCCCceEEEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GR---LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ..++..++.+|-|+-+|.++..|+.+-|++. +.   -++....-.++.+.+..++ .-..+|+.      +..+-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhhh
Confidence            3567788999999999999999988888754 32   2333322334555555444 23444554      356778899


Q ss_pred             CCCC--CEEEEE--EcCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           82 TTTG--TALREL--NFLTSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        82 ~~~~--~~~~~~--~~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +...  +.+.-+  .+...|+++-|+++.   +..+. |..+..||++... .+.......+...-+.+..- +...+|.
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-Ccchhhh
Confidence            7532  333322  334478999997654   33333 8899999998763 34443333232223333331 2234444


Q ss_pred             cCCCCccEEEEEEccCCccc------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          153 PASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      .   ....|++||++.+...      +...|+.++|+.- -..+.+.+.||+ ++.||........+... ....+|.--
T Consensus       177 s---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~v-tt~~piw~~  251 (1081)
T KOG0309|consen  177 S---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTV-TTNFPIWRG  251 (1081)
T ss_pred             c---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceec-cccCcceec
Confidence            3   2567999999876532      2377888888763 346788999998 59999865443222111 112345555


Q ss_pred             EeecCCCcccEEEEE-eCCCcEEEEecCCCccc---CCCCcc-cccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          226 SFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQ---RRGGRT-SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       226 ~fs~dg~~~~~las~-s~dg~v~iw~l~~~~~~---~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      .|-|=|.  .+..-- -.++.|++++-+..-..   ....++ ..|.| .-.....-.|....-.    -..-+.++-+|
T Consensus       252 r~~Pfg~--g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlWR~r~e~----~~d~d~rdfQL  324 (1081)
T KOG0309|consen  252 RYLPFGE--GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLWRKRKEC----DGDYDSRDFQL  324 (1081)
T ss_pred             cccccCc--eeEeccccCCeeeeeccccchhhhhccccCCcceeeecC-cchHHHHHhhhhcccc----cCCCCccceeE
Confidence            5555443  122211 11224555543321110   000001 01111 1111111133321100    00112345689


Q ss_pred             EEEEeCCcEEEEEEecC
Q 019672          301 SVITYNGYFVEYIFSIN  317 (337)
Q Consensus       301 ~~~~~dg~~~~~~~~~~  317 (337)
                      ++=+.|-.++.|.++.+
T Consensus       325 VTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  325 VTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             EEeecCCceEeeeccHH
Confidence            99999999999999765

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.56  E-value=0.0024  Score=59.81  Aligned_cols=90  Identities=17%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             EEEEECCCCeeeee-ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEE
Q 019672          115 TYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIA  190 (337)
Q Consensus       115 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~la  190 (337)
                      -.+|++...++... +..-+-+..+++.+.+|+...++.+-  .||+|.+||...+.....   -..+.++|+|+|..++
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC--~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC--EDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe--cCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEE
Confidence            45677754432211 11112233456666777777777665  699999999876543222   5578999999999999


Q ss_pred             EEeCCCcEEEEEEcCCC
Q 019672          191 TASEQGTIIRVFLVSEA  207 (337)
Q Consensus       191 t~s~dg~~i~vwd~~~~  207 (337)
                      +|++.|. +.+||+.-.
T Consensus       316 V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  316 VGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEcCCce-EEEEEeecC
Confidence            9999997 699998643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=0.00013  Score=70.80  Aligned_cols=177  Identities=16%  Similarity=0.126  Sum_probs=113.7

Q ss_pred             CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE----CC-eEEEEECC
Q 019672           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL----RE-KTYIYDAN  121 (337)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~----d~-~i~i~d~~  121 (337)
                      ...++++.-..+.+++.+       ..|.|+++++.+|.....+..++ +|+-+..+.++-...+    .. -..+|++.
T Consensus      1103 ~fTc~afs~~~~hL~vG~-------~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGS-------HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             ceeeEEeecCCceEEeee-------ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            344555555556776654       37899999999999888777654 7887877665533322    22 46689985


Q ss_pred             C-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCCCCEEEE
Q 019672          122 T-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSNGMYIAT  191 (337)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat  191 (337)
                      . +...+++...    ..+-|+-+.....+-+.    ...+.+||+++.....+         ..=++..|||+.+++. 
T Consensus      1176 s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~----~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1176 STGGPRHSFDED----KAVKFSNSLQFRALGTE----ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             cccCcccccccc----ceeehhhhHHHHHhccc----ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            3 4555666432    11223322222222222    24589999999876543         2348899999998876 


Q ss_pred             EeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          192 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       192 ~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                        .||  + +||++..+.++.|.+-.  ..+. =.|+|.|.   -++..+     .|||+++.+-
T Consensus      1247 --ndG--v-LWDvR~~~aIh~FD~ft--~~~~-G~FHP~g~---eVIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1247 --NDG--V-LWDVRIPEAIHRFDQFT--DYGG-GGFHPSGN---EVIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred             --eCc--e-eeeeccHHHHhhhhhhe--eccc-ccccCCCc---eEEeec-----hhhhhHHHHH
Confidence              577  4 89999998888875421  1122 26999998   777665     4899887653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.53  E-value=0.0013  Score=56.76  Aligned_cols=79  Identities=14%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce---eEeeccCCc---ceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          172 HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTY---PSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       172 ~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~---~~~~~~~~~---~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      .|.-.|+++.|+.|...+.++. |=+ |.+|++.-...   +..++....   ...|++..|+|...  +.+--.+..|+
T Consensus       170 aH~yhiNSiS~NsD~et~lSaD-dLr-INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--n~fmYSsSkG~  245 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSAD-DLR-INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--NVFMYSSSKGE  245 (460)
T ss_pred             cceeEeeeeeecCchheeeecc-cee-eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--ceEEEecCCCc
Confidence            4557799999999998888764 334 68999864322   222221110   12389999999876  47778888999


Q ss_pred             EEEEecCCC
Q 019672          246 LHVFSPGFA  254 (337)
Q Consensus       246 v~iw~l~~~  254 (337)
                      |++-|+++.
T Consensus       246 Ikl~DlRq~  254 (460)
T COG5170         246 IKLNDLRQS  254 (460)
T ss_pred             EEehhhhhh
Confidence            999999753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.015  Score=56.42  Aligned_cols=166  Identities=11%  Similarity=0.128  Sum_probs=106.9

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCc-EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCc
Q 019672           19 NSGFALSTKDG-FKIFDSSTGR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS   96 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~   96 (337)
                      ++.|+-|+-+| +.+++.+..- ..+..  ..     ....+.+++.++.       ||+|.|-.+-+.+..+++.+..+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~--s~-----~~~~Gey~asCS~-------DGkv~I~sl~~~~~~~~~df~rp  114 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNPKTNFDH--SS-----SILEGEYVASCSD-------DGKVVIGSLFTDDEITQYDFKRP  114 (846)
T ss_pred             cceeeeccccceEEEEecCCcccccccc--cc-----cccCCceEEEecC-------CCcEEEeeccCCccceeEecCCc
Confidence            35678888776 5777755331 11111  11     1345667776654       99999999999999999999999


Q ss_pred             eeEEEEcCC------eEEEEECC-eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672           97 ILAVRLNKK------RLVIVLRE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (337)
Q Consensus        97 v~~i~~~~~------~~~v~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~  169 (337)
                      +.+|+++|+      +.+++++. .+.++.-+=.+....+..+.....+.++++.+  .++|.++  .+| |+|||+.+.
T Consensus       115 iksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g--~lIAWan--d~G-v~vyd~~~~  189 (846)
T KOG2066|consen  115 IKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRG--NLIAWAN--DDG-VKVYDTPTR  189 (846)
T ss_pred             ceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecC--cEEEEec--CCC-cEEEecccc
Confidence            999999988      23444422 27776543222222222333445577788764  4999887  355 999999876


Q ss_pred             ccccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          170 HSHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       170 ~~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +.+..           .--..+.|.++. .|+-|=.| + |+|..++.
T Consensus       190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~-v~i~~I~~  234 (846)
T KOG2066|consen  190 QRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-S-VKICSIKK  234 (846)
T ss_pred             ceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-e-EEEEEEec
Confidence            65321           224567888774 56677666 3 68888873

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.0027  Score=58.76  Aligned_cols=136  Identities=14%  Similarity=0.282  Sum_probs=86.3

Q ss_pred             CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---------eEEEEE-CCeEEEEECCCC-e-
Q 019672           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIVL-REKTYIYDANTL-A-  124 (337)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~v~~-d~~i~i~d~~~~-~-  124 (337)
                      +++++.+.++      ..+.|.-.|+++|+.+.+..++..|.-+.+.++         .-+++. ++.|.-||.+-. + 
T Consensus       344 dsnlil~~~~------~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  344 DSNLILMDGG------EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             ccceEeeCCC------CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence            4455554444      457888899999999999999887666666543         223333 789999998632 1 


Q ss_pred             eeeeecCCC--CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCC
Q 019672          125 ILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       125 ~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      .+...+.+.  ....-.|++.-.++ ++++++  .+|.|++||- .+....+      .+|..|..+.||++|+..+.. 
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS--~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-  492 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTESG-YIVVGS--LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-  492 (644)
T ss_pred             eeeeeeccccccccccceeeecCCc-eEEEee--cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc-
Confidence            111111111  01122344444444 667776  5899999997 3433322      889999999999998877654 


Q ss_pred             cEEEEEEc
Q 019672          197 TIIRVFLV  204 (337)
Q Consensus       197 ~~i~vwd~  204 (337)
                      .+ -+-++
T Consensus       493 yL-lLi~t  499 (644)
T KOG2395|consen  493 YL-LLIDT  499 (644)
T ss_pred             EE-EEEEE
Confidence            33 35554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.46  E-value=0.12  Score=49.93  Aligned_cols=182  Identities=16%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             EEEEEc-CCceEEEeCCCCcEEEEEeeCC---EE---EEE-----EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           21 GFALST-KDGFKIFDSSTGRLCYERAVGA---FS---IVE-----MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        21 ~la~g~-~~g~~vw~~~~~~~~~~~~~~~---~~---~~~-----~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      .+.+++ ...+.-+|..+|+++...+...   ..   ...     .....+.+ +++.      .|+.|.-.|.++|+.+
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v-~v~t------~dg~l~ALDa~TGk~~  143 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKV-FFGT------LDARLVALDAKTGKVV  143 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEE-EEEc------CCCEEEEEECCCCCEE
Confidence            444444 4446778999999887654311   10   000     11112233 3433      4889999999999988


Q ss_pred             EEEEcCC-----ceeE-EEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCc-------------------
Q 019672           89 RELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK-------------------  136 (337)
Q Consensus        89 ~~~~~~~-----~v~~-i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~-------------------  136 (337)
                      -+.....     .+.+ -.+..+.+++..       ++.|.-+|..+++.+..+.+.+...                   
T Consensus       144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw  223 (527)
T TIGR03075       144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW  223 (527)
T ss_pred             eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence            7654321     1111 112345555543       4789999999999887765432210                   


Q ss_pred             --------e--E-EEEeeCCCccEEEEcCCC----------C----ccEEEEEEccCCccc-------cc-------Cce
Q 019672          137 --------G--L-CAFSPSLNACFLAVPAST----------T----KGSVLVYNVMELHSH-------CE-------APL  177 (337)
Q Consensus       137 --------~--~-~~~~~~~~~~~la~~~~~----------~----dg~v~i~d~~~~~~~-------~~-------~~i  177 (337)
                              +  + ...+.+++..++..+...          .    ...|.-.|+++++..       |.       .+.
T Consensus       224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                    0  0 122444444444433210          0    125677788888764       11       223


Q ss_pred             EEEEeCCCCC---EEEEEeCCCcEEEEEEcCCCcee
Q 019672          178 AAIVLSSNGM---YIATASEQGTIIRVFLVSEATKS  210 (337)
Q Consensus       178 ~~~~~s~dg~---~lat~s~dg~~i~vwd~~~~~~~  210 (337)
                      .-+.+..+|+   .++.+..+|. +.+.|-.+|+.+
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence            3344446777   7888999996 589999999986

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.42  E-value=0.068  Score=46.06  Aligned_cols=115  Identities=14%  Similarity=0.147  Sum_probs=73.1

Q ss_pred             EEEEcCCCCEEEEEcCCc---eEEEeCCCCcEEEEEeeCCEEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           12 FVSFNQDNSGFALSTKDG---FKIFDSSTGRLCYERAVGAFSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g---~~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      .+.|..+|.++-+.+..|   ++.+|+++++.+.......-..- .+..-.+.+...+-      ..+...+||..+-+.
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTTEE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEccccceE
Confidence            455666777655444443   68999999988766544321111 11122455555554      589999999999999


Q ss_pred             EEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCC
Q 019672           88 LRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~  132 (337)
                      +.++.++..=..+..+.+.+++.. ..+++++|..+.+..+.+...
T Consensus       123 ~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~  168 (264)
T PF05096_consen  123 IGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT  168 (264)
T ss_dssp             EEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E
T ss_pred             EEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEE
Confidence            999999888888887777766654 568999999888777776443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.29  E-value=0.0012  Score=65.64  Aligned_cols=97  Identities=14%  Similarity=0.248  Sum_probs=69.1

Q ss_pred             cEEEEcCCCCccEEEEEEccC-Ccccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce-
Q 019672          148 CFLAVPASTTKGSVLVYNVME-LHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-  220 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~-~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~-  220 (337)
                      ..++.+.+  .|.|...|+.. ....+     +++|++++|+.||++++.|-.+|. |.+||+.+++.++.+..+.++. 
T Consensus       100 ~~ivi~Ts--~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  100 VPIVIGTS--HGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeEEEEcC--chhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccc
Confidence            35666553  67788888765 23222     299999999999999999999997 6899999998888776543332 


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .|..+.+..++.   .+.++...|.  +|++.
T Consensus       177 ~vi~v~~t~~nS---~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS---KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence            233344445555   7888888886  67653

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.15  Score=50.25  Aligned_cols=169  Identities=17%  Similarity=0.230  Sum_probs=92.4

Q ss_pred             CCceEEEEECCCCCEEEEE-EcCCc-eeEEEEcCC--eEEEEE-C-C----eEEEEECCCC------eee--eeecC---
Q 019672           73 SPRRLCLFNTTTGTALREL-NFLTS-ILAVRLNKK--RLVIVL-R-E----KTYIYDANTL------AIL--DTIDT---  131 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~-~~~~~-v~~i~~~~~--~~~v~~-d-~----~i~i~d~~~~------~~~--~~~~~---  131 (337)
                      .+|.|.+.+-.- +.+..+ .++.. |.-+....+  .++... | +    .++|||+...      +.+  +.+.+   
T Consensus        43 ~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~n  121 (933)
T KOG2114|consen   43 ADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKN  121 (933)
T ss_pred             ccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCC
Confidence            478887776432 222333 23334 444444343  233333 3 2    5899999532      223  12222   


Q ss_pred             CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE--ccCCc-----ccc--cCceEEEEeCCCCCE-EEEEeCCCcEEEE
Q 019672          132 VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN--VMELH-----SHC--EAPLAAIVLSSNGMY-IATASEQGTIIRV  201 (337)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d--~~~~~-----~~~--~~~i~~~~~s~dg~~-lat~s~dg~~i~v  201 (337)
                      +.++...+.++.+.+-..+|++-  .+|.|..+.  +..-+     ..+  ..||+.+++..+++. +..+... . |.+
T Consensus       122 p~~~~p~s~l~Vs~~l~~Iv~Gf--~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~-V~~  197 (933)
T KOG2114|consen  122 PTNPSPASSLAVSEDLKTIVCGF--TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-Q-VML  197 (933)
T ss_pred             CCCCCcceEEEEEccccEEEEEe--cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-e-eEE
Confidence            22233344455444455566544  589999884  22111     112  289999999999887 3333333 3 579


Q ss_pred             EEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          202 FLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       202 wd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |.+..... ...+  ..+...+.|.+|++...   .+++++.. -+.+|+.+
T Consensus       198 y~l~gr~p~~~~l--d~~G~~lnCss~~~~t~---qfIca~~e-~l~fY~sd  243 (933)
T KOG2114|consen  198 YSLSGRTPSLKVL--DNNGISLNCSSFSDGTY---QFICAGSE-FLYFYDSD  243 (933)
T ss_pred             EEecCCCcceeee--ccCCccceeeecCCCCc---cEEEecCc-eEEEEcCC
Confidence            99873331 2223  23456789999986554   35555443 69999876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.11  E-value=0.24  Score=46.31  Aligned_cols=162  Identities=16%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             eEEEEECCCCCEEEEEEcC-CceeEEEEcCC-eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE-----EEEeeCCCc
Q 019672           76 RLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL-----CAFSPSLNA  147 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  147 (337)
                      .|.||+.. |+++.++... +++.++.|+.+ .+++.. +|.+++||+.... ...+........+     .+......|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence            69999874 6677777665 58999999655 455444 8999999986433 1111110000111     111221233


Q ss_pred             cEEEEcCCCCccEEEEEE-ccCCcc---ccc-----------CceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          148 CFLAVPASTTKGSVLVYN-VMELHS---HCE-----------APLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d-~~~~~~---~~~-----------~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                       .++..+   ++.+.+.. ......   ...           ..... ..++.+....+....++. +.+-+-...+.  
T Consensus       140 -ivvLt~---~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--  212 (410)
T PF04841_consen  140 -IVVLTG---NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--  212 (410)
T ss_pred             -EEEECC---CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc--
Confidence             222222   33443332 111100   000           00000 234444444444444433 33223222111  


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                       +.   ...++..|+.||+|+   ++|.-..+|.+.|...+-
T Consensus       213 -i~---~~~~i~~iavSpng~---~iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  213 -ID---SDGPIIKIAVSPNGK---FIALFTDSGNLWVVSSDF  247 (410)
T ss_pred             -cc---CCCCeEEEEECCCCC---EEEEEECCCCEEEEECcc
Confidence             11   124689999999999   999999999998887543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0022  Score=57.23  Aligned_cols=91  Identities=13%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             EEEEEccCCccc---c--cCceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          161 VLVYNVMELHSH---C--EAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       161 v~i~d~~~~~~~---~--~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                      |++.+..+.+..   +  ...|..++|||..+ +|..++.+.. |+|.|+++......+..   ...+++++|.-|..  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a---~~~~wSC~wDlde~--  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIA---YNQIWSCCWDLDER--  248 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheec---cCCceeeeeccCCc--
Confidence            666655444432   2  26799999999877 6777777765 89999999887776643   25699999998877  


Q ss_pred             cEEEEEeCCCcEEEEecCCCccc
Q 019672          235 DILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      +++-+|-..|.|.|||++....+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCch
Confidence            59999999999999999876543

>smart00320 WD40 WD40 repeats

Probab=97.10  E-value=0.0017  Score=36.96  Aligned_cols=29  Identities=17%  Similarity=0.438  Sum_probs=26.3

Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ...|.++.|++++.   ++++++.|+.+++|+
T Consensus        12 ~~~i~~~~~~~~~~---~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGK---YLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCC---EEEEecCCCeEEEcC
Confidence            45699999999998   999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.23  Score=45.89  Aligned_cols=216  Identities=13%  Similarity=0.123  Sum_probs=135.2

Q ss_pred             EEEEEcCCCCEEEEEc--CCceEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           11 FFVSFNQDNSGFALST--KDGFKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~--~~g~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      ..+++++++..+.+..  .+.+.+.|..+.+.+.....+ .-..+.+.++.+.+.....+    ..++++.+.|..+++.
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~----~~~~~vsvid~~t~~~  152 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAG----NGNNTVSVIDAATNKV  152 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecc----cCCceEEEEeCCCCeE
Confidence            4678899998655444  466899998777776655433 22334555666555444432    1268999999999998


Q ss_pred             EEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeee-e----ecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           88 LRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-T----IDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      +.+......-..+++++++  ++++.  ++.+.+.|.......+ .    +.....+ ....+.++....+++-... .+
T Consensus       153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~-~~  230 (381)
T COG3391         153 TATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGS-GS  230 (381)
T ss_pred             EEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccC-CC
Confidence            8886554322778887654  45554  7799999987665542 1    2222222 2344555444444444332 24


Q ss_pred             cEEEEEEccCCccccc-Cc-----eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-eeEEEEEeecCC
Q 019672          159 GSVLVYNVMELHSHCE-AP-----LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSLSFGQSM  231 (337)
Q Consensus       159 g~v~i~d~~~~~~~~~-~~-----i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~l~fs~dg  231 (337)
                      +.+...|..++..... .+     ...+.++|+|+.+......+..+.+-|..+.+....+..+... ..+..+++.+..
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            7899999888765433 22     3458999999998888655434688999888877765443321 235666776654


Q ss_pred             C
Q 019672          232 Q  232 (337)
Q Consensus       232 ~  232 (337)
                      .
T Consensus       311 ~  311 (381)
T COG3391         311 D  311 (381)
T ss_pred             c
Confidence            3

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.25  Score=46.16  Aligned_cols=241  Identities=15%  Similarity=0.132  Sum_probs=123.6

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-----eEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCC----CCCCceEE
Q 019672           10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQP----SLSPRRLC   78 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~-~g-----~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~d~~v~   78 (337)
                      +...+++|||+++|.+.+ +|     ++++|+++++.+... .......+.+..++..+.+..-....    ......|.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346789999999887643 22     589999999876543 21111226777787788777654221    11266799


Q ss_pred             EEECCCCCEE--EEEEcC--Cc-eeEEEEcCC--eEEEEE----C-CeEEEEECCCC----eeeeeecCCCCCceEEEEe
Q 019672           79 LFNTTTGTAL--RELNFL--TS-ILAVRLNKK--RLVIVL----R-EKTYIYDANTL----AILDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        79 iwd~~~~~~~--~~~~~~--~~-v~~i~~~~~--~~~v~~----d-~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~  142 (337)
                      .|.+.++...  .-+...  .- ...+..+++  .+++..    + ..+++.|+..+    .....+...... ....+.
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~  284 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVD  284 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEE
Confidence            9998876432  222222  22 456666654  344433    3 46888898764    223333222111 112222


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCcccc--------cC--ceEEEEeCCCCCEEEEEeCCCc-EEEEEEcCCCceeE
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EA--PLAAIVLSSNGMYIATASEQGT-IIRVFLVSEATKSY  211 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--------~~--~i~~~~~s~dg~~lat~s~dg~-~i~vwd~~~~~~~~  211 (337)
                      ...+..++.+......+.|...++......+        ..  .+..+....+ .+++.--.++. .|+++++..+....
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl~~~~~~~~~l~v~~~~~~~~~~  363 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVLSYRENGSSRLRVYDLDDGKESR  363 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEEEEEECCccEEEEEECCCCcEEe
Confidence            2333334444332245777778877665311        12  3455544322 34444444442 35789988444444


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCCc
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI  255 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~~  255 (337)
                      .+... ..+.|..+...+++.  .+.++-+.-   +++.-||+.+++
T Consensus       364 ~~~~p-~~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  364 EIPLP-EAGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEESS-SSSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTC
T ss_pred             eecCC-cceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCC
Confidence            44322 233466666666665  244433333   456667776554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.08  E-value=0.0048  Score=58.90  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             EEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee-
Q 019672          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS-  210 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~-  210 (337)
                      ..++..  ...+++.+.+  .|.+.+|.-..+....      .+.+..+.+|++..++|.|+..|. |.++-++.+..- 
T Consensus        38 lTc~ds--t~~~l~~GsS--~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   38 LTCVDA--TEEYLAMGSS--AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKELPRD  112 (726)
T ss_pred             EEEeec--CCceEEEecc--cceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhccCCCc
Confidence            344443  4558888874  7999999877665432      256778889999999999998886 578887764321 


Q ss_pred             -EeeccCC--cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          211 -YSFRRGT--YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       211 -~~~~~~~--~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                       .-+....  |+..|++++||+|+.   .+.+|...|+|+.-.|+.
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence             1122222  356799999999999   999999999999988876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.06  E-value=0.11  Score=53.11  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=98.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      -+..|-+++||||++.++..+....-++...+...+.+...     ..-..+.+-|...--.+-|.       -++...-
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-------~gr~~~~  180 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS-------EGRQAAR  180 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecc-------hhhhccc
Confidence            35689999999999998888776655554444444433321     11111122121111111111       1111111


Q ss_pred             ECCCC-CEEEEEEcCCceeEEEEcCCe--EEEEE-----C-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           81 NTTTG-TALRELNFLTSILAVRLNKKR--LVIVL-----R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        81 d~~~~-~~~~~~~~~~~v~~i~~~~~~--~~v~~-----d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      +.... +.+........=..|.|-.++  +++..     + .+|+|||-. +. +.....+ ....--++++-|.|..+|
T Consensus       181 ~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~-~~~l~~~LsWkPsgs~iA  257 (1265)
T KOG1920|consen  181 QKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEP-VEGLQHSLSWKPSGSLIA  257 (1265)
T ss_pred             ccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCc-ccccccceeecCCCCeEe
Confidence            11100 000111112222346775554  44422     4 689999976 43 3333221 111223556666777888


Q ss_pred             EcCCC-CccEEEEEEccCCcc--------cccCceEEEEeCCCCCEEEEE--eCCCcEEEEEEcCCC
Q 019672          152 VPAST-TKGSVLVYNVMELHS--------HCEAPLAAIVLSSNGMYIATA--SEQGTIIRVFLVSEA  207 (337)
Q Consensus       152 ~~~~~-~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~dg~~lat~--s~dg~~i~vwd~~~~  207 (337)
                      +.... .++.|.+|.-...+.        ....+|..++|+.++..||+-  ...+..|++|-+.+-
T Consensus       258 ~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  258 AIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            76532 356788887543321        122569999999999999872  223344789987654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.02  E-value=0.00039  Score=65.38  Aligned_cols=194  Identities=15%  Similarity=0.214  Sum_probs=115.4

Q ss_pred             CCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEE-EE--EEcCCceeEEEEcCC---eEEEEE-----CCe
Q 019672           47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RE--LNFLTSILAVRLNKK---RLVIVL-----REK  114 (337)
Q Consensus        47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~-~~--~~~~~~v~~i~~~~~---~~~v~~-----d~~  114 (337)
                      ..+.+++..++.+ .+..+|      .++|.|.+-.++...-. .+  -.+..+.++++|++-   .++++.     |..
T Consensus        57 qy~kcva~~y~~d~cIlavG------~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVG------SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCceeehhhcCCchhhhhhc------cccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            4566677666665 222233      25788888877654322 22  233457788888653   333333     457


Q ss_pred             EEEEECCCC--eee--eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc----ccccCceEEEEeCC-C
Q 019672          115 TYIYDANTL--AIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH----SHCEAPLAAIVLSS-N  185 (337)
Q Consensus       115 i~i~d~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~----~~~~~~i~~~~~s~-d  185 (337)
                      +.|||+.++  .+.  ..+.+ .-..+...+++..+..++.++.  ....+.++|++...    .+.+..+..+.++| .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm--~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGM--TSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS  207 (783)
T ss_pred             ccceecccccCCCcccccccc-ccccCccccccccCcchhhccc--ccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence            999999765  111  11222 1112223455555555555544  46789999998332    23346788899999 8


Q ss_pred             CCEEEEEeCCCcEEEEEEc-CCCc-eeEeeccC--CcceeEEEEEeecCCCcccEEEEEeCC-CcEEEEecCC
Q 019672          186 GMYIATASEQGTIIRVFLV-SEAT-KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGF  253 (337)
Q Consensus       186 g~~lat~s~dg~~i~vwd~-~~~~-~~~~~~~~--~~~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~  253 (337)
                      +.++++-+ ||. |-+||. .+-+ .+..+.+.  ..+..+..++|+|...  ..|++.+.| ++|+++++..
T Consensus       208 ~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--glla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  208 PNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--GLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--chhhhhccCcceEEEecccc
Confidence            88988766 775 689994 2222 12222111  1123488999999765  367777766 7899999864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.96  E-value=0.069  Score=39.48  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=61.0

Q ss_pred             EeeCCCc-cEEEEcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          141 FSPSLNA-CFLAVPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       141 ~~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      +.++.++ .-|++++  +|..|++|+-.....  ..+..|.+++-... ..++.|-+.|+ |-+|+-  .+.+.+.+..+
T Consensus         8 ~d~d~dg~~eLlvGs--~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~--~~RlWRiKSK~   81 (111)
T PF14783_consen    8 FDFDGDGENELLVGS--DDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGT-VGVYDR--SQRLWRIKSKN   81 (111)
T ss_pred             EecCCCCcceEEEec--CCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCE-EEEEeC--cceeeeeccCC
Confidence            3344443 2344444  699999998654321  12378888887776 57899999998 588875  44555554322


Q ss_pred             cceeEEEEEe---ecCCCcccEEEEEeCCCcEEE
Q 019672          218 YPSTIFSLSF---GQSMQFQDILVATSSSGSLHV  248 (337)
Q Consensus       218 ~~~~i~~l~f---s~dg~~~~~las~s~dg~v~i  248 (337)
                         .+.++++   .-||.  .-|++|-.+|.|-+
T Consensus        82 ---~~~~~~~~D~~gdG~--~eLI~GwsnGkve~  110 (111)
T PF14783_consen   82 ---QVTSMAFYDINGDGV--PELIVGWSNGKVEV  110 (111)
T ss_pred             ---CeEEEEEEcCCCCCc--eEEEEEecCCeEEe
Confidence               2444443   34444  36999999988743

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.92  E-value=0.27  Score=43.98  Aligned_cols=239  Identities=13%  Similarity=0.148  Sum_probs=123.4

Q ss_pred             ceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeEEEEE-----------CCeEEEEECCCCeeeeeecCCCCCceEE---
Q 019672           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL-----------REKTYIYDANTLAILDTIDTVPNLKGLC---  139 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~---  139 (337)
                      +++.+.|..+++.+..+...- .-..++-+++.++++.           .+-|.+||..+.....++..++.+...+   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            589999999999888775432 1122333445565543           2369999999999888887655322211   


Q ss_pred             --EEeeCCCccEEEEcCCCCccEEEEEEccCCcccccCce-EEEEeCCCC-CEEEEEeCCCcEEEEEEcC-CCceeEeec
Q 019672          140 --AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPL-AAIVLSSNG-MYIATASEQGTIIRVFLVS-EATKSYSFR  214 (337)
Q Consensus       140 --~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~~~i-~~~~~s~dg-~~lat~s~dg~~i~vwd~~-~~~~~~~~~  214 (337)
                        .+..+.++.++.+....-...|.|.|+...+.+.+-++ -|.-.=|.| +.+.+-|.||++. -..+. .|+...+..
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~-~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLL-TVTLDADGKEAQKST  175 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEE-EEEETSTSSEEEEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceE-EEEECCCCCEeEeec
Confidence              12233455555443322346788889888776654111 111111322 4588899999964 56665 565542221


Q ss_pred             cCCc--cee-EEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeecc
Q 019672          215 RGTY--PST-IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF  291 (337)
Q Consensus       215 ~~~~--~~~-i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  291 (337)
                      .-.+  ..+ ...=+++.++.   .+.=-+-+|.|+--|+.......  .+++..+.   +.....-|.|.+.-.    +
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~---~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t---~~e~~~~WrPGG~Q~----~  243 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGG---RLYFVSYEGNVYSADLSGDSAKF--GKPWSLLT---DAEKADGWRPGGWQL----I  243 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTT---EEEEEBTTSEEEEEEETTSSEEE--EEEEESS----HHHHHTTEEE-SSS-----E
T ss_pred             cccCCCCcccccccceECCCC---eEEEEecCCEEEEEeccCCcccc--cCcccccC---ccccccCcCCcceee----e
Confidence            1111  111 22224454444   45557888999988887654211  11111110   011123455544211    1


Q ss_pred             CCCcccCEEEEEE--------eCCcEEEEEEecCCCCe-eceEE
Q 019672          292 PAGVKRASVSVIT--------YNGYFVEYIFSINNCCE-STWTL  326 (337)
Q Consensus       292 ~~~~~~~~l~~~~--------~dg~~~~~~~~~~~~~~-~~~~~  326 (337)
                      +.++..++|++.-        .|+.=.+|.+|.++.++ ..|.+
T Consensus       244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l  287 (342)
T PF06433_consen  244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL  287 (342)
T ss_dssp             EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred             eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence            1223335555542        35566789898888875 33444

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0044  Score=58.47  Aligned_cols=88  Identities=16%  Similarity=0.170  Sum_probs=62.1

Q ss_pred             EEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----ccCceE-EEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe
Q 019672          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLA-AIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  212 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~-~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~  212 (337)
                      +.-+-++|.-.++|+..  .+|.|.+..+.-.+.-    +..+++ +++|.|||++||.|=.||+ |++.|+.+|..+..
T Consensus        23 i~~~ewnP~~dLiA~~t--~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRT--EKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCccchhheec--cCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCceec
Confidence            34445566666777766  5787877776633321    224455 9999999999999999998 69999999988876


Q ss_pred             eccCCcceeEEEEEeec
Q 019672          213 FRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       213 ~~~~~~~~~i~~l~fs~  229 (337)
                      +.. .....|.++-|+|
T Consensus       100 ~~~-s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLF-SVETDISKGIWDR  115 (665)
T ss_pred             ccc-ccccchheeeccc
Confidence            421 2234577777863

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.0062  Score=57.51  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=60.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE-EEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI-FSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i-~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      -.|.-+.|+|.-.+||++.++|.++ +.-+. .+++.++...  ...+ .+++|.|||+   .||.|=.||+|++-|+++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gell-i~R~n-~qRlwtip~p--~~~v~~sL~W~~DGk---llaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELL-IHRLN-WQRLWTIPIP--GENVTASLCWRPDGK---LLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEE-EEEec-cceeEeccCC--CCccceeeeecCCCC---EEEEEecCCeEEEEEccC
Confidence            4577788999999999999999853 67666 7788877522  1234 4999999999   999999999999999987


Q ss_pred             Ccc
Q 019672          254 AIN  256 (337)
Q Consensus       254 ~~~  256 (337)
                      +..
T Consensus        94 ~~~   96 (665)
T KOG4640|consen   94 GGR   96 (665)
T ss_pred             CCc
Confidence            654

>smart00320 WD40 WD40 repeats

Probab=96.72  E-value=0.003  Score=35.78  Aligned_cols=29  Identities=34%  Similarity=0.765  Sum_probs=25.8

Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          174 EAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       174 ~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      ...|.++.|+|++.++++++.||. +++||
T Consensus        12 ~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             CCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            468999999999999999999997 68996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.70  E-value=0.82  Score=46.06  Aligned_cols=275  Identities=12%  Similarity=0.115  Sum_probs=140.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCce---EEEeCCCCcEEEEE--ee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGF---KIFDSSTGRLCYER--AV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~---~vw~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +..|....|--|..+|.++..+|.   .++|..++.+--.+  +.  .++..-.+...+.--+++.+       |+-..+
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-------drP~vi  655 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-------DRPTVI  655 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-------CCCEEE
Confidence            345667778788889999998883   45566666542221  11  23332233222222222222       455555


Q ss_pred             EECCCCCEEEE-EEcCC--ceeEEEE--cCCeEEEEECCeEEEEECCCCeee--eeecCCCCCceEEEEeeCCCccEEEE
Q 019672           80 FNTTTGTALRE-LNFLT--SILAVRL--NKKRLVIVLREKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        80 wd~~~~~~~~~-~~~~~--~v~~i~~--~~~~~~v~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      |-.. ++...+ +..+.  .++.+.-  -++.++.+..+.+++.-+..-+.+  +++..+..+..+   +..+....+++
T Consensus       656 Y~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI---~~q~~sl~~~v  731 (1096)
T KOG1897|consen  656 YSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRI---CYQESSLTFGV  731 (1096)
T ss_pred             EecC-CcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhhe---EecccceEEEE
Confidence            5432 222221 11111  1111110  245666677777777766544332  233333333332   11111112221


Q ss_pred             cC------------CCCccEEEEEEccCCccccc---------CceEEEEeCCC-CCEEEEEeC----------CCcEEE
Q 019672          153 PA------------STTKGSVLVYNVMELHSHCE---------APLAAIVLSSN-GMYIATASE----------QGTIIR  200 (337)
Q Consensus       153 ~~------------~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~d-g~~lat~s~----------dg~~i~  200 (337)
                      ..            ...-..++++|-++.+..+.         -.|.++.|..| +++++.|..          .|++ -
T Consensus       732 ~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRI-i  810 (1096)
T KOG1897|consen  732 LSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRI-I  810 (1096)
T ss_pred             EecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceE-E
Confidence            11            00124577788777765432         44666678887 788888763          3663 4


Q ss_pred             EEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecc
Q 019672          201 VFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  280 (337)
Q Consensus       201 vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  280 (337)
                      ||....++.+.......-.+.++++.-- +|+   +||+  -...|++|++.++++.+.   ...   ...|..      
T Consensus       811 vfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk---llA~--In~~vrLye~t~~~eLr~---e~~---~~~~~~------  872 (1096)
T KOG1897|consen  811 VFEFEELNSLELVAETVVKGAVYALVEF-NGK---LLAG--INQSVRLYEWTTERELRI---ECN---ISNPII------  872 (1096)
T ss_pred             EEEEecCCceeeeeeeeeccceeehhhh-CCe---EEEe--cCcEEEEEEccccceehh---hhc---ccCCeE------
Confidence            7777665444433222223345555432 465   5543  445799999988755431   000   011110      


Q ss_pred             cccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          281 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                               ++.-...++.|++|..-+.+....++.++++
T Consensus       873 ---------aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~  903 (1096)
T KOG1897|consen  873 ---------ALDLQVKGDEIAVGDLMRSITLLQYKGDEGN  903 (1096)
T ss_pred             ---------EEEEEecCcEEEEeeccceEEEEEEeccCCc
Confidence                     1111234588999999999999999888876

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.68  E-value=0.0059  Score=37.78  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  210 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~  210 (337)
                      .+|.+++|+|...+||.|+.+|. |.|+.+ +++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcCc
Confidence            67999999999999999999998 579988 66654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.097  Score=48.86  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc----CCCCccEEEEEEccCCcc----c---c----cCce
Q 019672          113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP----ASTTKGSVLVYNVMELHS----H---C----EAPL  177 (337)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~dg~v~i~d~~~~~~----~---~----~~~i  177 (337)
                      +.++-.|+..|+.+.+...+.. ..+..+.+..+...+...    |- .+..|.-||.+-...    .   +    ...-
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecccccccccc
Confidence            4677778888887777765543 234444443333222211    11 367788899874322    0   1    1556


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .|.+-..+| +||.||.+|. ||+||- .+..-++.-.+ -..+|..|..+.||+   +|++.. +.++-+-++.
T Consensus       434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGK---wil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGK---WILATC-KTYLLLIDTL  500 (644)
T ss_pred             ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCc---EEEEec-ccEEEEEEEe
Confidence            777777776 7999999998 799997 55544443333 245799999999999   666554 5577777653

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.61  E-value=0.95  Score=45.64  Aligned_cols=226  Identities=12%  Similarity=0.109  Sum_probs=116.9

Q ss_pred             CCCceEEEEECCCC-CEEEEEEcCC--ceeEEE--Ec---CCeEEEEECCeEEEEECCCCeeeeeecC-CCCCceEEEEe
Q 019672           72 LSPRRLCLFNTTTG-TALRELNFLT--SILAVR--LN---KKRLVIVLREKTYIYDANTLAILDTIDT-VPNLKGLCAFS  142 (337)
Q Consensus        72 ~~d~~v~iwd~~~~-~~~~~~~~~~--~v~~i~--~~---~~~~~v~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~  142 (337)
                      +.|+++|+.-..-+ ......+.++  .+..++  ++   +++++++.-+.-++..+...-....... ......+.+-.
T Consensus       379 ~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~  458 (1096)
T KOG1897|consen  379 FKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCST  458 (1096)
T ss_pred             CCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEc
Confidence            47999999754332 2233444444  444554  32   2456666666667777654311111110 01111121111


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCcc--cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHS--HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ..++ +++-..    ...|++++-.....  .....++..+.+.+...++.++.++. +-..++..+. +.+..+.....
T Consensus       459 i~g~-~lvQvT----s~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~-l~y~~i~~~~-l~e~~~~~~e~  531 (1096)
T KOG1897|consen  459 INGN-QLVQVT----SNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLA-LFYLEIEDGG-LREVSHKEFEY  531 (1096)
T ss_pred             cCCc-eEEEEe----cccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccE-EEEEEeeccc-eeeeeeheecc
Confidence            2222 222221    34578777551111  11256666666777778888887775 3345666555 33332222345


Q ss_pred             eEEEEEeecCCCccc---EEEEEeCCCcEEEEe-cCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcc
Q 019672          221 TIFSLSFGQSMQFQD---ILVATSSSGSLHVFS-PGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK  296 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~---~las~s~dg~v~iw~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  296 (337)
                      +|.|+.++|-|..++   ++++|..+..+.+-- ++......    ....-+..+|...             ....+..+
T Consensus       532 evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~----~~~l~~~~iPRSI-------------l~~~~e~d  594 (1096)
T KOG1897|consen  532 EVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT----HEQLSGEIIPRSI-------------LLTTFEGD  594 (1096)
T ss_pred             eeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee----eeccCCCccchhe-------------eeEEeecc
Confidence            799999997643335   899998887765443 22211100    0000112223211             00111333


Q ss_pred             cCEEEEEEeCCcEEEEEEecCCCCe
Q 019672          297 RASVSVITYNGYFVEYIFSINNCCE  321 (337)
Q Consensus       297 ~~~l~~~~~dg~~~~~~~~~~~~~~  321 (337)
                      ..+|+++..||.+..|.++..+++.
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~l  619 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQL  619 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceE
Confidence            5899999999999999999888863

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.68  Score=42.81  Aligned_cols=173  Identities=12%  Similarity=0.108  Sum_probs=117.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      .++.|.+.|..+.+.............+.++++  .+.++.    ++.+.+.|-.+.+.+..+.....+   ..+..+|+
T Consensus        94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~  170 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPD  170 (381)
T ss_pred             CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCC
Confidence            478999999888888887766655666777654  455554    367888888888887776543334   44455666


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc-c--------CceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEe-e
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC-E--------APLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYS-F  213 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-~--------~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~-~  213 (337)
                      +..+..... .++.|.+.|.......+ .        ..-..++++|+|+++......   ++ +.+.|..++..... .
T Consensus       171 g~~vyv~~~-~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~  248 (381)
T COG3391         171 GNKVYVTNS-DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDL  248 (381)
T ss_pred             CCeEEEEec-CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEecc
Confidence            665555543 58999999987665442 1        345678999999976665443   34 57889888877654 2


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEE-eCCCcEEEEecCCCc
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAI  255 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~-s~dg~v~iw~l~~~~  255 (337)
                      ..+. . ....++++|+|+   ++-+. +..+.+.+-|..+..
T Consensus       249 ~~~~-~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         249 PVGS-G-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             cccc-C-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCc
Confidence            2221 1 234679999999   66665 445889998877643

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.51  E-value=0.012  Score=36.44  Aligned_cols=31  Identities=19%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .++|.+++|+|...   +||.++.+|.|.|+.+.
T Consensus        11 ~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence            45699999999998   99999999999999984

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.6  Score=41.67  Aligned_cols=174  Identities=11%  Similarity=0.061  Sum_probs=92.6

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeE-EEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCC---CceEEEEeeCCCccE
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILA-VRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACF  149 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~-i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  149 (337)
                      .+.|.-||..+++ ...+..+..+.+ ..++..+.+++.+..+++++..++..+..+.....   .........+|++.+
T Consensus        46 ~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~  124 (307)
T COG3386          46 GGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI  124 (307)
T ss_pred             CCeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE
Confidence            6788888887665 334445554444 44577778888888888888865554323211111   011112233455555


Q ss_pred             EEEcCC---------CCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC--CceeE--
Q 019672          150 LAVPAS---------TTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATKSY--  211 (337)
Q Consensus       150 la~~~~---------~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~--~~~~~--  211 (337)
                      .+..-.         ..-|.|.-+|. .+....     -..-+.|+|||||+.|..+-.....|.-|++..  +..-.  
T Consensus       125 wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~  203 (307)
T COG3386         125 WFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRR  203 (307)
T ss_pred             EEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcc
Confidence            443221         12343444443 222211     144588999999998888776644455565542  21110  


Q ss_pred             -eeccCCcceeEEEEEeecCCCcccEEEEEeCCC-cEEEEecC
Q 019672          212 -SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG  252 (337)
Q Consensus       212 -~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~v~iw~l~  252 (337)
                       .+.....+...-.++...+|.   +.+++-..| .|++|+.+
T Consensus       204 ~~~~~~~~~G~PDG~~vDadG~---lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         204 GFVDFDEEPGLPDGMAVDADGN---LWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             eEEEccCCCCCCCceEEeCCCC---EEEecccCCceEEEECCC
Confidence             011111122234566777887   554444444 89999876

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.46  E-value=0.26  Score=46.17  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=92.1

Q ss_pred             ceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc
Q 019672           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      ..+.++|+.+++......+...-..-.|+|+  .++++.  ++  .|+++|+...+..+ +........  .=+++|++.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~--~Ps~spdG~  294 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINT--SPSWSPDGS  294 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcccc--CccCCCCCC
Confidence            4699999999887666666665555667764  455555  44  68888998766333 322211111  334567888


Q ss_pred             EEEEcCCCCccE--EEEEEccCCcccc--c--CceEEEEeCCCCCEEEEEeCC-Cc-EEEEEEcCCCceeEeeccCCcce
Q 019672          149 FLAVPASTTKGS--VLVYNVMELHSHC--E--APLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       149 ~la~~~~~~dg~--v~i~d~~~~~~~~--~--~~i~~~~~s~dg~~lat~s~d-g~-~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      .+++.+. ..|.  |.++|+.......  .  ..-..-.+||||++|+-.+.. |. .|-+.|+.++..+..+....   
T Consensus       295 ~ivf~Sd-r~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---  370 (425)
T COG0823         295 KIVFTSD-RGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---  370 (425)
T ss_pred             EEEEEeC-CCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc---
Confidence            8887764 3555  4555665443211  1  222267789999999987753 32 24466776665444443221   


Q ss_pred             eEEEEEeecCCCcccEEEEEeCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~d  243 (337)
                      ....-.|.|+|.   .+...+..
T Consensus       371 ~~e~ps~~~ng~---~i~~~s~~  390 (425)
T COG0823         371 LNESPSWAPNGR---MIMFSSGQ  390 (425)
T ss_pred             cCCCCCcCCCCc---eEEEeccC
Confidence            123446777777   44444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.44  E-value=0.0097  Score=58.15  Aligned_cols=104  Identities=16%  Similarity=0.222  Sum_probs=74.8

Q ss_pred             eCCCccEEEEcC--CCCccEEEEEEccCCccc--cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672          143 PSLNACFLAVPA--STTKGSVLVYNVMELHSH--CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  216 (337)
Q Consensus       143 ~~~~~~~la~~~--~~~dg~v~i~d~~~~~~~--~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~  216 (337)
                      ++|-.+++|+++  ....|.|.||-- ++.+.  -+  -.+++++|+|..-.||.|-+-|. +.+|...+.+. .+.. .
T Consensus        23 WHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-htv~-~   98 (1416)
T KOG3617|consen   23 WHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HTVV-E   98 (1416)
T ss_pred             cCCCCceeEEEEecCCCCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccce-eEEEecCCcee-eeec-c
Confidence            444445555443  223688988832 23222  12  34678999999888999988886 68999876543 4443 3


Q ss_pred             CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          217 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       217 ~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .|+++|.-+.|||+|.   .|.++..-|.|++|....
T Consensus        99 th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CCCCCceeEEecCCCC---eEEEcCCCceeEEEEeee
Confidence            4678899999999999   999999999999999874

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.39  E-value=0.52  Score=43.69  Aligned_cols=179  Identities=17%  Similarity=0.209  Sum_probs=89.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC----------EEEEEE---ccCC----CEEEEEeCCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA----------FSIVEM---LYSS----SLLAIVGAGE   68 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~----------~~~~~~---~~~~----~~~~~~~~g~   68 (337)
                      .++|++++.| |=-++|+|.++| +.|.|+..-..++......          +..+++   .+..    ....+++.  
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT--  162 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT--  162 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE--
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe--
Confidence            6899999987 556899999887 6999998778888754322          222222   1221    34555655  


Q ss_pred             CCCCCCceEEEEECC--C-CCEEEE----E-EcCCceeEEE-EcC-----------------------CeEEEEECCeEE
Q 019672           69 QPSLSPRRLCLFNTT--T-GTALRE----L-NFLTSILAVR-LNK-----------------------KRLVIVLREKTY  116 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~--~-~~~~~~----~-~~~~~v~~i~-~~~-----------------------~~~~v~~d~~i~  116 (337)
                          ..|.+.+|.+.  . +.....    . ...++|..|. ++.                       ..++++++..++
T Consensus       163 ----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  163 ----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             ----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             ----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence                46888888754  1 222211    1 2344555554 221                       145556699999


Q ss_pred             EEECCCCeeeeeecCCCCCceEEEEee---CCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCC
Q 019672          117 IYDANTLAILDTIDTVPNLKGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSS  184 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~  184 (337)
                      ++...+.+..+......-....+++.+   ...+..|++--  .+|.|++|.+...+.+..         ..+...+|++
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            999988776665542211112223321   11233344333  489999999988776533         2234455566


Q ss_pred             CCCEEEEEeC
Q 019672          185 NGMYIATASE  194 (337)
Q Consensus       185 dg~~lat~s~  194 (337)
                      +|..++-.+.
T Consensus       317 ~Gdi~~~~gp  326 (395)
T PF08596_consen  317 NGDIFYWTGP  326 (395)
T ss_dssp             TS-EEEE-SS
T ss_pred             CCCEEEEeCc
Confidence            6665544433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.35  E-value=0.016  Score=56.68  Aligned_cols=87  Identities=14%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEeCCCC
Q 019672          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVLSSNG  186 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~s~dg  186 (337)
                      .|+|.||- .+|++.+.+.-+   ....+++++|....||.+=  +-|.+.+|...+.+.     .|+.+|..+.|||+|
T Consensus        40 ~GSVtIfa-dtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gw--e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G  113 (1416)
T KOG3617|consen   40 GGSVTIFA-DTGEPQRDVTYP---VHATSLCWHPEEFVLAQGW--EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG  113 (1416)
T ss_pred             CceEEEEe-cCCCCCcccccc---eehhhhccChHHHHHhhcc--ccceeEEEecCCceeeeeccCCCCCceeEEecCCC
Confidence            57888883 556655554332   3345678888887777664  578999998776543     355999999999999


Q ss_pred             CEEEEEeCCCcEEEEEEcC
Q 019672          187 MYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       187 ~~lat~s~dg~~i~vwd~~  205 (337)
                      ..|.|+..-|. +.+|...
T Consensus       114 ~~l~t~d~~g~-v~lwr~d  131 (1416)
T KOG3617|consen  114 TVLMTLDNPGS-VHLWRYD  131 (1416)
T ss_pred             CeEEEcCCCce-eEEEEee
Confidence            99999999997 5899765

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.33  E-value=0.33  Score=48.42  Aligned_cols=82  Identities=15%  Similarity=0.197  Sum_probs=55.1

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC----------CCce--eEe-ec------cCCcceeEEEEEeecCCCccc
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVS----------EATK--SYS-FR------RGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~----------~~~~--~~~-~~------~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      ..|..|.+||+|++||-.+..|-.  |-.+.          .|+.  ..+ +.      .......|..+.|+|.+..-.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~--V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV--VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE--EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            568999999999999999998843  44442          1221  111 10      111234689999999851112


Q ss_pred             EEEEEeCCCcEEEEecCCCcccC
Q 019672          236 ILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      .|++-..|+++++||+.....+.
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPW  185 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCe
Confidence            89999999999999997655443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.32  E-value=0.61  Score=40.23  Aligned_cols=187  Identities=15%  Similarity=0.145  Sum_probs=96.6

Q ss_pred             CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCe-EEEEE--CCeEEEEECCC
Q 019672           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKR-LVIVL--REKTYIYDANT  122 (337)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~-~~v~~--d~~i~i~d~~~  122 (337)
                      ++.-+.+.++.+.++.+..      .++.|.-.+. +|+.+.++.+..  ..-+|.+-.+. +++..  ++.+.++++..
T Consensus        23 e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            4556667677788888887      3788888886 588888887764  67778776544 44444  56888888832


Q ss_pred             C------eeeeeec--CC-CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC---Ccc-------------cccCce
Q 019672          123 L------AILDTID--TV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LHS-------------HCEAPL  177 (337)
Q Consensus       123 ~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~---~~~-------------~~~~~i  177 (337)
                      .      .....+.  .. .+..+.-.++.++.+..+..+-  +..-..+|.+..   ...             .....+
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k--E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK--ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE--ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe--CCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            1      1112222  22 2334556667776655544442  233345554432   111             011668


Q ss_pred             EEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEee--ccCCcc-----eeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672          178 AAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSF--RRGTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHVF  249 (337)
Q Consensus       178 ~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~--~~~~~~-----~~i~~l~fs~dg~~~~~las~s~dg~v~iw  249 (337)
                      .+++++|. |++++...+.. .+-.+| .+|+.+..+  ..+.+.     ..--.|+|.++|.    |...|.-+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~-~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESR-LLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----LYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTT-EEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EEEEETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCC-eEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC----EEEEcCCceEEEe
Confidence            99999996 45555555554 456788 567765544  332211     1356899999998    4444555555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.06  E-value=1.1  Score=40.85  Aligned_cols=92  Identities=15%  Similarity=0.100  Sum_probs=43.7

Q ss_pred             ccEEEEEEccCCcccc--c-CceEEEEeCCCCCEEEEEeCCC---------------cEEEEEEcCCCceeEeec-----
Q 019672          158 KGSVLVYNVMELHSHC--E-APLAAIVLSSNGMYIATASEQG---------------TIIRVFLVSEATKSYSFR-----  214 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~--~-~~i~~~~~s~dg~~lat~s~dg---------------~~i~vwd~~~~~~~~~~~-----  214 (337)
                      +..|.-+|+.++....  . .+...+-.++||+++|-=+.|.               ..|++++++.++...-.+     
T Consensus       263 ~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw  342 (386)
T PF14583_consen  263 DFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW  342 (386)
T ss_dssp             -EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred             ceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence            3445556666554321  1 3455666689999887544431               145678888776432111     


Q ss_pred             ---cCCc-ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          215 ---RGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       215 ---~~~~-~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                         .++. ... ....|||||+.  .|.++...|...||-++
T Consensus       343 ~v~~~~~q~~h-Php~FSPDgk~--VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  343 KVLDGDRQVTH-PHPSFSPDGKW--VLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             --BTTBSSTT-----EE-TTSSE--EEEEE-TTSS-EEEEEE
T ss_pred             eeecCCCccCC-CCCccCCCCCE--EEEECCCCCCccEEEEe
Confidence               1100 011 24689999992  56666667888887553

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.99  E-value=0.94  Score=44.38  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             EEeeCCCccEEEEcC------CCCccEEEEEEccCCcccc--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          140 AFSPSLNACFLAVPA------STTKGSVLVYNVMELHSHC--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       140 ~~~~~~~~~~la~~~------~~~dg~v~i~d~~~~~~~~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      ....++++..+|+..      .+....+.+++........  ....+.-.|+|||+.|++.+....+.++.+-.....+.
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~  433 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLA  433 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCceEE
Confidence            334456676766553      1112356666653222111  13478889999999998887543434444332222222


Q ss_pred             eec--cC----CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          212 SFR--RG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       212 ~~~--~~----~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      .+.  .+    .....|.++.|||||.   .+|.-. +|.|+|=-
T Consensus       434 ~~~vd~ge~~~~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~  474 (591)
T PRK13616        434 RTPVDASAVASRVPGPISELQLSRDGV---RAAMII-GGKVYLAV  474 (591)
T ss_pred             EEeccCchhhhccCCCcCeEEECCCCC---EEEEEE-CCEEEEEE
Confidence            111  00    1123599999999999   888766 47777633

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.97  E-value=0.22  Score=46.16  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=54.4

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec--c----CCcceeEEEEEee-----cCCCcccEEEEEeCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR--R----GTYPSTIFSLSFG-----QSMQFQDILVATSSS  243 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~--~----~~~~~~i~~l~fs-----~dg~~~~~las~s~d  243 (337)
                      ++|++++.|.-| ++|.|.++|++ -|.|++....++.-.  .    ......|+++.|+     .|+..+-.|++|.+.
T Consensus        87 g~vtal~~S~iG-Fvaigy~~G~l-~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~  164 (395)
T PF08596_consen   87 GPVTALKNSDIG-FVAIGYESGSL-VVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS  164 (395)
T ss_dssp             -SEEEEEE-BTS-EEEEEETTSEE-EEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred             CcEeEEecCCCc-EEEEEecCCcE-EEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence            899999998555 99999999985 699998888776521  1    1123358888887     344333479999999


Q ss_pred             CcEEEEecC
Q 019672          244 GSLHVFSPG  252 (337)
Q Consensus       244 g~v~iw~l~  252 (337)
                      |.+.+|.+-
T Consensus       165 G~v~~fkIl  173 (395)
T PF08596_consen  165 GNVLTFKIL  173 (395)
T ss_dssp             SEEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.43  Score=41.35  Aligned_cols=81  Identities=19%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             EEcCCCCEEEEEcCC-----ce-EEEeCCCC-cEEEEEeeCCEE--EEEEccCCCEEEEEeCCCC--C---------CCC
Q 019672           14 SFNQDNSGFALSTKD-----GF-KIFDSSTG-RLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQ--P---------SLS   73 (337)
Q Consensus        14 ~fs~dg~~la~g~~~-----g~-~vw~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~--~---------~~~   73 (337)
                      .|+|||.+|.+..+|     |+ -|||...+ +.+-++..++++  -+.+..++..++.+.||-.  |         .+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999998876543     34 79997643 333334333333  2334557777777666421  1         122


Q ss_pred             CceEEEEECCCCCEEEEEEcC
Q 019672           74 PRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      .-.+.+.|..+|..+.+...+
T Consensus       200 ePSlvlld~atG~liekh~Lp  220 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLP  220 (366)
T ss_pred             CccEEEEeccccchhhhccCc
Confidence            334666666666666554433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.95  E-value=0.32  Score=45.52  Aligned_cols=133  Identities=17%  Similarity=0.067  Sum_probs=76.7

Q ss_pred             CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE--EEEEccCCcccc--c--CceEEEEeCCCC
Q 019672          113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV--LVYNVMELHSHC--E--APLAAIVLSSNG  186 (337)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v--~i~d~~~~~~~~--~--~~i~~~~~s~dg  186 (337)
                      ..++++|+.+++.........+   ..+-.++||+..++++.. .||..  .++|+.......  .  +.-..=.|+|||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~-rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSS-RDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEEC-CCCCccEEEEcCCCCcceecccCCccccCccCCCCC
Confidence            3699999988865544442222   223456677788887765 45654  555776654321  1  222355789999


Q ss_pred             CEEEEEeCCCcE--EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCc--EEEEecCCCc
Q 019672          187 MYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGS--LHVFSPGFAI  255 (337)
Q Consensus       187 ~~lat~s~dg~~--i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~--v~iw~l~~~~  255 (337)
                      ++|+-.|+.+..  |.+.|.+.++. ..+........  .-.+||||+   +|+..+. +|.  |-+.++..+.
T Consensus       294 ~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~--~p~~SpdG~---~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         294 SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS--NPVWSPDGD---KIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc--CccCCCCCC---EEEEEeccCCceeeEEeccCCCC
Confidence            999988765432  34556655543 33322211111  557999999   7776664 344  5555554433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.67  E-value=1.3  Score=38.31  Aligned_cols=151  Identities=11%  Similarity=0.124  Sum_probs=85.5

Q ss_pred             CceeEEEEcC--CeEEEEEC--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLNK--KRLVIVLR--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~~--~~~~v~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ..+.+|.+++  +.++++.|  +.|..++. +++.++.+.... ....-++..-+++.++++..  .++.+.++++....
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~   97 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDT   97 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEET--TTTEEEEEEE----
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccc
Confidence            3689999986  45666664  47877886 477887775432 12233444456666766654  37888888873221


Q ss_pred             c----c------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC---CceeEee-----c-cCCcceeEEEE
Q 019672          171 S----H------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE---ATKSYSF-----R-RGTYPSTIFSL  225 (337)
Q Consensus       171 ~----~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~---~~~~~~~-----~-~~~~~~~i~~l  225 (337)
                      .    .            ....+-.++|+|.++.|..+-+..- .+|+.+..   +..+...     . .......+.++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceeccccce
Confidence            1    0            0145889999999888888877765 46776653   2221111     1 01112247889


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +|+|...  .+++.+.....|.++|.+
T Consensus       177 ~~~p~t~--~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  177 SYDPRTG--HLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             EEETTTT--EEEEEETTTTEEEEE-TT
T ss_pred             EEcCCCC--eEEEEECCCCeEEEECCC
Confidence            9998765  377777777889888843

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.65  E-value=1.8  Score=40.08  Aligned_cols=192  Identities=11%  Similarity=0.081  Sum_probs=85.1

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCC----CEEEEEEcC--------CceeEEEEcCCe-EEEEE--------CCeEEE
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELNFL--------TSILAVRLNKKR-LVIVL--------REKTYI  117 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~----~~~~~~~~~--------~~v~~i~~~~~~-~~v~~--------d~~i~i  117 (337)
                      +++++-+-      ..++|.|.|+.+.    +..+.++-.        +.-..+..-+++ +++..        .+.+.+
T Consensus        88 r~Li~PgL------~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   88 RYLILPGL------RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -EEEEEBT------TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred             CcEEeeee------ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence            45555443      5789999998743    333333310        011112223443 44432        236888


Q ss_pred             EECCCCeeeeeecCCCC-CceEEEEeeCCCccEEEEcCC------------------CCccEEEEEEccCCccccc----
Q 019672          118 YDANTLAILDTIDTVPN-LKGLCAFSPSLNACFLAVPAS------------------TTKGSVLVYNVMELHSHCE----  174 (337)
Q Consensus       118 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~------------------~~dg~v~i~d~~~~~~~~~----  174 (337)
                      +|-.+.+.....+.... ...-..+-..|....++++.-                  .-..++.+||+.+.+..+.    
T Consensus       162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            88887777766654322 122234444555556665530                  0246899999999887654    


Q ss_pred             ---CceEEEEeC--CCCCEEEEEe-CCCcEEEEEEcCCCc----eeEeeccC---------------CcceeEEEEEeec
Q 019672          175 ---APLAAIVLS--SNGMYIATAS-EQGTIIRVFLVSEAT----KSYSFRRG---------------TYPSTIFSLSFGQ  229 (337)
Q Consensus       175 ---~~i~~~~~s--~dg~~lat~s-~dg~~i~vwd~~~~~----~~~~~~~~---------------~~~~~i~~l~fs~  229 (337)
                         .....|.|.  |+..+=.+|+ -.+++.++|....++    ++.++...               .-+.-|+.+..|.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence               235566664  5555544443 344444555544453    22222100               0023489999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCcccC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~~~~  258 (337)
                      |.++  +.++.=.+|.|+-||+..+.+++
T Consensus       322 DDrf--LYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  322 DDRF--LYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             TS-E--EEEEETTTTEEEEEE-SSTTS-E
T ss_pred             CCCE--EEEEcccCCcEEEEecCCCCCCc
Confidence            9994  55666778999999999887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.57  E-value=0.65  Score=34.39  Aligned_cols=94  Identities=15%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPN  134 (337)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~  134 (337)
                      ++..-+++++      .|..||+|+-.  +.+.+++..+.|..+.- .+..+..+. .|+|-+|+-.  +.+..++....
T Consensus        13 dg~~eLlvGs------~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~   82 (111)
T PF14783_consen   13 DGENELLVGS------DDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKNQ   82 (111)
T ss_pred             CCcceEEEec------CCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCCC
Confidence            3334455655      69999999754  67888888888888765 445555555 7899999753  33445554444


Q ss_pred             CceEEEEeeCCCccE-EEEcCCCCccEEE
Q 019672          135 LKGLCAFSPSLNACF-LAVPASTTKGSVL  162 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~-la~~~~~~dg~v~  162 (337)
                      +..+..+..+.++.. |+++=  .+|.|-
T Consensus        83 ~~~~~~~D~~gdG~~eLI~Gw--snGkve  109 (111)
T PF14783_consen   83 VTSMAFYDINGDGVPELIVGW--SNGKVE  109 (111)
T ss_pred             eEEEEEEcCCCCCceEEEEEe--cCCeEE
Confidence            445555555554433 33332  356553

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.51  E-value=0.074  Score=44.37  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=64.6

Q ss_pred             EEEEcCCCCccEEEEEEccCCccc----c--cCceEE-EEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc-e
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSH----C--EAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-S  220 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~----~--~~~i~~-~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~-~  220 (337)
                      -+++++  .+|.|.+|...-.-..    .  ..+|.+ +.--.++.+..+++.||. ||.|+++-++.+...  +++. .
T Consensus        72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~--g~h~~~  146 (238)
T KOG2444|consen   72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYV--GQHNFE  146 (238)
T ss_pred             eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeee--ccccCC
Confidence            444454  5899999987622111    1  134433 333456678889999997 799999988876543  2233 3


Q ss_pred             eEEEEEeecCCCcccEEEEE--eCCCcEEEEecCCCcc
Q 019672          221 TIFSLSFGQSMQFQDILVAT--SSSGSLHVFSPGFAIN  256 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~--s~dg~v~iw~l~~~~~  256 (337)
                      ++..+..+..+.   +++.+  |.|..++.|+++....
T Consensus       147 ~~e~~ivv~sd~---~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  147 SGEELIVVGSDE---FLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             CcceeEEecCCc---eEEeeccccchhhhhcchhhhhc
Confidence            444445555566   78888  8888888898876554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.36  E-value=0.11  Score=49.95  Aligned_cols=122  Identities=13%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ..|.--+++..+++|+.|++-|. +.+|+-..++....-..+ ....+..+..|++..   ++|+|+..|.|-||.+...
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEY---LVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             ceEEEEEeecCCceEEEecccce-EEEEecCchhhhcccccC-ccceEEEEEecchhH---hhhhhcCCceEEeehhhcc
Confidence            44555566778899999999997 589997776654322222 233466778899988   8999999999999998773


Q ss_pred             cccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          255 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      ..+.     ..|+... .         ..+...+.++.+.+++.++++|..-|+|..-.|+.
T Consensus       109 ~p~~-----~~~~t~~-d---------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRD-----LDYVTPC-D---------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCc-----ceeeccc-c---------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            3322     1111100 0         01334455566666779999999999999999987

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.33  E-value=0.066  Score=32.14  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=26.8

Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .|.++.|||+....++|+-+-..|.|+|+|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4789999975432348999988999999999853

It contains a characteristic DLL sequence motif.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.33  E-value=1.9  Score=42.31  Aligned_cols=110  Identities=20%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             EEEEeeCCCccEEEEcC----------CCCccEEEEEEccCCccc--ccCceEEEEeCCCCCEEEEEeCCCcEEEE---E
Q 019672          138 LCAFSPSLNACFLAVPA----------STTKGSVLVYNVMELHSH--CEAPLAAIVLSSNGMYIATASEQGTIIRV---F  202 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~----------~~~dg~v~i~d~~~~~~~--~~~~i~~~~~s~dg~~lat~s~dg~~i~v---w  202 (337)
                      ...-+++|++..+++..          ....+.+.+.++..+...  ....|..+.|||||++||... +|. +.|   -
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vv  476 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGK-VYLAVVE  476 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEE
Confidence            34445566655554442          112345655566544332  136799999999999999877 465 445   4


Q ss_pred             EcCCCce-e---EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          203 LVSEATK-S---YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       203 d~~~~~~-~---~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ....|+. +   .++..+ ....+.++.|.+++.    |+++..++...+|.+.-.
T Consensus       477 r~~~G~~~l~~~~~l~~~-l~~~~~~l~W~~~~~----L~V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        477 QTEDGQYALTNPREVGPG-LGDTAVSLDWRTGDS----LVVGRSDPEHPVWYVNLD  527 (591)
T ss_pred             eCCCCceeecccEEeecc-cCCccccceEecCCE----EEEEecCCCCceEEEecC
Confidence            4455641 1   111111 112357899999997    456666666667766543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.30  E-value=2.2  Score=38.90  Aligned_cols=215  Identities=12%  Similarity=0.079  Sum_probs=110.0

Q ss_pred             cCCCCEEEEEcC----------CceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672           16 NQDNSGFALSTK----------DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus        16 s~dg~~la~g~~----------~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      |||+++++...+          ..+.|||+++++...-.. ........++++++.++++.+        +.|.+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~--------~nly~~~~~~   72 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD--------NNLYLRDLAT   72 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET--------TEEEEESSTT
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec--------CceEEEECCC
Confidence            689998777432          235789999876532211 345666788899999999864        7999999887


Q ss_pred             CCEEEEEEcCC-------------------ceeEEEEcCCeEEE--EE--CCeEEEEECCCCeeeeeecCCC-CCceEEE
Q 019672           85 GTALRELNFLT-------------------SILAVRLNKKRLVI--VL--REKTYIYDANTLAILDTIDTVP-NLKGLCA  140 (337)
Q Consensus        85 ~~~~~~~~~~~-------------------~v~~i~~~~~~~~v--~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~  140 (337)
                      ++. ..++..+                   .-.++.|+|+.-.+  ..  +..+..+.+..      ..... ....+..
T Consensus        73 ~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~  145 (353)
T PF00930_consen   73 GQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVES  145 (353)
T ss_dssp             SEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEE
T ss_pred             CCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccc
Confidence            743 3333211                   12345666654322  22  33333333210      00000 0001222


Q ss_pred             EeeCCCccEEEEcCCC-CccEEEEEEccCCcccc----------cCceEEEEeCCCCCEEEE--EeCCCc--EEEEEEcC
Q 019672          141 FSPSLNACFLAVPAST-TKGSVLVYNVMELHSHC----------EAPLAAIVLSSNGMYIAT--ASEQGT--IIRVFLVS  205 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~~~----------~~~i~~~~~s~dg~~lat--~s~dg~--~i~vwd~~  205 (337)
                      +..       ..+|.. ..-.+.|+|+.+++...          ...+..+.|.++++.|+.  .+.+.+  .+.+.|..
T Consensus       146 ~~Y-------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~  218 (353)
T PF00930_consen  146 IRY-------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAS  218 (353)
T ss_dssp             EE---------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEEC
T ss_pred             ccc-------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECC
Confidence            221       011210 12235667887765421          156899999999983333  333332  24567887


Q ss_pred             CCceeEeeccCCcce---eEEEEEee-cCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          206 EATKSYSFRRGTYPS---TIFSLSFG-QSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       206 ~~~~~~~~~~~~~~~---~i~~l~fs-~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +++.-..++.. ...   .-....|. +++.  .+|.....+|.-||+-++...
T Consensus       219 tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~--~~l~~s~~~G~~hly~~~~~~  269 (353)
T PF00930_consen  219 TGETRVVLEET-SDGWVDVYDPPHFLGPDGN--EFLWISERDGYRHLYLYDLDG  269 (353)
T ss_dssp             TTTCEEEEEEE-SSSSSSSSSEEEE-TTTSS--EEEEEEETTSSEEEEEEETTS
T ss_pred             CCceeEEEEec-CCcceeeecccccccCCCC--EEEEEEEcCCCcEEEEEcccc
Confidence            77643222111 111   11234444 6666  388888888988888765443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.27  E-value=0.085  Score=48.25  Aligned_cols=89  Identities=12%  Similarity=0.111  Sum_probs=57.1

Q ss_pred             ccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc---------------
Q 019672          158 KGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY---------------  218 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~---------------  218 (337)
                      .+.+.|||+.+++....    ..+....|||+|+.+|-... +. |.+++..+++..+--..|..               
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~n-ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NN-LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TE-EEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-Cc-eEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            57799999998764322    57899999999999999875 45 57999887754332221200               


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCC-CcEEEEec
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSP  251 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l  251 (337)
                      -..-..+.|||||+   +||....| ..|+.+.+
T Consensus       100 ~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen  100 FDRRSAVWWSPDSK---YLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             SSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEE
T ss_pred             cccccceEECCCCC---EEEEEEECCcCCceEEe
Confidence            00114578999999   77777655 44665554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.24  E-value=1.7  Score=37.24  Aligned_cols=107  Identities=10%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPN  134 (337)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~  134 (337)
                      ++..+++++.      -.+.+.--|.++|+.+-+......+.+-+. -+|.+++.- .+.+++.+.+++.+...+...+.
T Consensus        21 dskT~v~igS------Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   21 DSKTLVVIGS------HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             CCceEEEEec------CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            3444445544      367888889999988776555554433222 345544433 88999999999977776654332


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~  173 (337)
                       ...-+ ..++++.++..++  .|+.....|.++...+-
T Consensus        95 -vk~~a-~~d~~~glIycgs--hd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   95 -VKVRA-QCDFDGGLIYCGS--HDGNFYALDPKTYGCVY  129 (354)
T ss_pred             -hccce-EEcCCCceEEEec--CCCcEEEecccccceEE
Confidence             12222 2244555665554  69999999998876553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.23  E-value=3.2  Score=40.21  Aligned_cols=225  Identities=11%  Similarity=0.110  Sum_probs=121.6

Q ss_pred             EEEEEcCC-ceEEEeCCCCcEEEEEeeCCE----EEEE--EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc
Q 019672           21 GFALSTKD-GFKIFDSSTGRLCYERAVGAF----SIVE--MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF   93 (337)
Q Consensus        21 ~la~g~~~-g~~vw~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~   93 (337)
                      .+.+++.+ .+.-+|.++|+++........    .+..  +.. .+.+++...+.. ...++.|..+|.++|+.+-++..
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence            44555544 468889999998876543211    1100  011 223332222100 01368999999999988765432


Q ss_pred             CC--------------------------------cee-EEEEcC--CeEEEEE-------------CC----eEEEEECC
Q 019672           94 LT--------------------------------SIL-AVRLNK--KRLVIVL-------------RE----KTYIYDAN  121 (337)
Q Consensus        94 ~~--------------------------------~v~-~i~~~~--~~~~v~~-------------d~----~i~i~d~~  121 (337)
                      -.                                .+. .+.+++  +.+++.+             |+    +|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            10                                111 123333  2344433             12    67777889


Q ss_pred             CCeeeeeecCCCCC---------ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccccc-------------C---
Q 019672          122 TLAILDTIDTVPNL---------KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCE-------------A---  175 (337)
Q Consensus       122 ~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~~-------------~---  175 (337)
                      +++....++..++.         ..+..+..++. ...++.+.  .+|.+.+.|-.+++.+..             .   
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            99887776553321         11222222221 13565665  489999999988775310             0   


Q ss_pred             --ce----------------------------EEEEeCCCCCEEEEEeCC------------------------------
Q 019672          176 --PL----------------------------AAIVLSSNGMYIATASEQ------------------------------  195 (337)
Q Consensus       176 --~i----------------------------~~~~~s~dg~~lat~s~d------------------------------  195 (337)
                        ++                            ..++++|+..++.....+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence              01                            126677766555443332                              


Q ss_pred             ---CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          196 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       196 ---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                         |. +.-+|+.+|+.+.++......  .-+. ..-.+.   .++.++.+|.++.+|.++++.
T Consensus       438 ~~~g~-l~AiD~~tGk~~W~~~~~~p~--~~~~-l~t~g~---lvf~g~~~G~l~a~D~~TGe~  494 (527)
T TIGR03075       438 DHMGS-LIAWDPITGKIVWEHKEDFPL--WGGV-LATAGD---LVFYGTLEGYFKAFDAKTGEE  494 (527)
T ss_pred             CCcee-EEEEeCCCCceeeEecCCCCC--CCcc-eEECCc---EEEEECCCCeEEEEECCCCCE
Confidence               33 457888888887766533211  1111 112445   677788899999999998865

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=1.5  Score=36.33  Aligned_cols=157  Identities=9%  Similarity=0.082  Sum_probs=89.7

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-cee--EEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-SIL--AVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~--~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      .-..|+.||+.+|+.+.+-+... .+.  .+.-.++.+...+  ++..+.||..+.+.+..+.-..+   -.+++.++.+
T Consensus        66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge---GWgLt~d~~~  142 (262)
T COG3823          66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE---GWGLTSDDKN  142 (262)
T ss_pred             ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc---ceeeecCCcc
Confidence            35689999999999988766552 232  2333456666666  88999999998887777654333   2445554443


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--  215 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~--  215 (337)
                       ++-+.|   ..+++.-|..+.....+          ..++.+.| -||...|-.=.+.++ -.-|.++|+.+..+..  
T Consensus       143 -LimsdG---satL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I-~rI~p~sGrV~~widlS~  216 (262)
T COG3823         143 -LIMSDG---SATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRI-ARIDPDSGRVVAWIDLSG  216 (262)
T ss_pred             -eEeeCC---ceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecce-EEEcCCCCcEEEEEEccC
Confidence             333322   34555556655443221          22333333 256666655555443 3456667765543321  


Q ss_pred             --------CCcceeEEEEEeecCCCcccEEEEE
Q 019672          216 --------GTYPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       216 --------~~~~~~i~~l~fs~dg~~~~~las~  240 (337)
                              ..+....+.+|+.|++.  .++++|
T Consensus       217 L~~~~~~~~~~~nvlNGIA~~~~~~--r~~iTG  247 (262)
T COG3823         217 LLKELNLDKSNDNVLNGIAHDPQQD--RFLITG  247 (262)
T ss_pred             CchhcCccccccccccceeecCcCC--eEEEec
Confidence                    11122467889988874  155554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.10  E-value=4.4  Score=41.06  Aligned_cols=140  Identities=16%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCcee----------------E-EEEcCCeEEEEE-----------CCeEEEEECCCCe
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSIL----------------A-VRLNKKRLVIVL-----------REKTYIYDANTLA  124 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~----------------~-i~~~~~~~~v~~-----------d~~i~i~d~~~~~  124 (337)
                      .|+.|.-.|.++|+....+..+..|.                + -.+..+.+++..           ++.|+-+|.++++
T Consensus       268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            48899999999999886654332220                0 112345555542           4679999999999


Q ss_pred             eeeeecCCC-C------Cc--------eE-EEEeeCCCccEEEEcC----------------CCCccEEEEEEccCCccc
Q 019672          125 ILDTIDTVP-N------LK--------GL-CAFSPSLNACFLAVPA----------------STTKGSVLVYNVMELHSH  172 (337)
Q Consensus       125 ~~~~~~~~~-~------~~--------~~-~~~~~~~~~~~la~~~----------------~~~dg~v~i~d~~~~~~~  172 (337)
                      ++..+.... .      ..        .. ...+.+++..++..+.                ....+.|.-.|+.+++..
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            987775320 0      00        00 1122233322322211                002456667788887754


Q ss_pred             c-------c-------CceEEEEeCC-CCC---EEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          173 C-------E-------APLAAIVLSS-NGM---YIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       173 ~-------~-------~~i~~~~~s~-dg~---~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      -       .       .+..-+.+.. +|+   .++.++.+|. +.+.|-++|+.+...
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ-IYVLDRRTGEPIVPV  485 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE-EEEEECCCCCEEeec
Confidence            1       1       1222233433 664   7889999997 589999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.04  E-value=0.0042  Score=58.74  Aligned_cols=154  Identities=17%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             CCCCeEEEEEcC-CCCEEEEEcCCc-----eEEEeCCCC--cE----EEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCC
Q 019672            6 SSYPVFFVSFNQ-DNSGFALSTKDG-----FKIFDSSTG--RL----CYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSL   72 (337)
Q Consensus         6 ~~~~v~~~~fs~-dg~~la~g~~~g-----~~vw~~~~~--~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~   72 (337)
                      ...+-++++|++ |.+.||+|-++.     +.|||+.++  ..    .+.. ...+...+++. ....+++.|.      
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm------  173 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGM------  173 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhccc------
Confidence            345688999997 567789886542     589998776  11    1111 12233344444 2233333333      


Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-ceeEEEEc---CCeEEEEECCeEEEEE-CCCC-eeeeeecCCCC--CceEEEEeeC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-SILAVRLN---KKRLVIVLREKTYIYD-ANTL-AILDTIDTVPN--LKGLCAFSPS  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~---~~~~~v~~d~~i~i~d-~~~~-~~~~~~~~~~~--~~~~~~~~~~  144 (337)
                      ..+.+.+.|++...... ..+.. .+.++.++   +++++...|+.|.+|| .++- .++..+...++  +..+.+++..
T Consensus       174 ~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  174 TSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             ccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            46789999987432111 11222 34555554   4555555599999999 3332 33334432233  3345555554


Q ss_pred             CCc-cEEEEcCCCCccEEEEEEccC
Q 019672          145 LNA-CFLAVPASTTKGSVLVYNVME  168 (337)
Q Consensus       145 ~~~-~~la~~~~~~dg~v~i~d~~~  168 (337)
                      |.. .++++... ..++|+.+|+..
T Consensus       253 Ptrtglla~l~R-dS~tIrlydi~~  276 (783)
T KOG1008|consen  253 PTRTGLLAVLSR-DSITIRLYDICV  276 (783)
T ss_pred             cCCcchhhhhcc-CcceEEEecccc
Confidence            432 24555554 589999999863

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.99  E-value=1.5  Score=43.38  Aligned_cols=145  Identities=22%  Similarity=0.244  Sum_probs=83.0

Q ss_pred             CCeEEEEECCeEEEEECCCCeee------eeecC--------------CCCCceEEEE--eeCCCccEEEEcCCCCccEE
Q 019672          104 KKRLVIVLREKTYIYDANTLAIL------DTIDT--------------VPNLKGLCAF--SPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus       104 ~~~~~v~~d~~i~i~d~~~~~~~------~~~~~--------------~~~~~~~~~~--~~~~~~~~la~~~~~~dg~v  161 (337)
                      .+.+++|..+.|+||++.....+      ..+.+              .+.+..+.-+  ..-+....|+.+.  .||.|
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~--DdG~V  126 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCT--DDGDV  126 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEe--cCCeE
Confidence            67778888889999987543221      11111              0112222211  1112334555554  59999


Q ss_pred             EEEEccCCc-----------c-------cc------cCceEEEEeC--CCCCEEEEEeCCCcEEEEEEcCCC-ceeEeec
Q 019672          162 LVYNVMELH-----------S-------HC------EAPLAAIVLS--SNGMYIATASEQGTIIRVFLVSEA-TKSYSFR  214 (337)
Q Consensus       162 ~i~d~~~~~-----------~-------~~------~~~i~~~~~s--~dg~~lat~s~dg~~i~vwd~~~~-~~~~~~~  214 (337)
                      .+|.+.+..           .       ..      ....+.++++  ...++||.+++... |-||=.... +....-.
T Consensus       127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce-EEEEEEecccccccccc
Confidence            999763210           0       00      1678899998  77778888777654 567654331 1111111


Q ss_pred             cCCcceeEEEEEeecCCCccc---EEEEEeCCCcEEEEec
Q 019672          215 RGTYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSP  251 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~---~las~s~dg~v~iw~l  251 (337)
                      ...+...|.+|+|-++...++   ++++++-.|.+-+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            112234588999987663222   7889999999988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.13  Score=51.92  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=49.0

Q ss_pred             CCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          185 NGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       185 dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .+..+|.|++.|.+ -..|+...  +..+..+ ....+|.+++|+.||+   +++.|-.+|-|.+||+..++.
T Consensus        98 ~~~~ivi~Ts~ghv-l~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~---~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHV-LLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS---LLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             eeeeEEEEcCchhh-hhhhhhcc--cchhhcCCccCCcceeeEecCCCc---eeccccCCCcEEEEEccCCcc
Confidence            45688999988875 47777543  1112222 2245799999999999   999999999999999987654

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.70  E-value=3  Score=37.26  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=60.8

Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccC--Cccc-------c---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVME--LHSH-------C---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~--~~~~-------~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      .++++||+..+.++.. ..+.|.-|++..  +...       .   .+..-.++.+.+|.+-+++-..|..|.+|+-. |
T Consensus       167 Gla~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G  244 (307)
T COG3386         167 GLAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G  244 (307)
T ss_pred             ceEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence            5566777777777664 457888887752  2111       0   14455677778888776555554336789887 8


Q ss_pred             ceeEeeccCCcceeEEEEEee-cCCCcccEEEEEeCC
Q 019672          208 TKSYSFRRGTYPSTIFSLSFG-QSMQFQDILVATSSS  243 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs-~dg~~~~~las~s~d  243 (337)
                      +++.+++...  ..+.+++|- |+.+   .|...+..
T Consensus       245 ~l~~~i~lP~--~~~t~~~FgG~~~~---~L~iTs~~  276 (307)
T COG3386         245 KLLGEIKLPV--KRPTNPAFGGPDLN---TLYITSAR  276 (307)
T ss_pred             cEEEEEECCC--CCCccceEeCCCcC---EEEEEecC
Confidence            8888775432  346778886 5555   55555544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.70  E-value=0.69  Score=38.31  Aligned_cols=90  Identities=12%  Similarity=0.129  Sum_probs=56.0

Q ss_pred             eEEEeCCCCcEEEEEeeCC-EEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE
Q 019672           30 FKIFDSSTGRLCYERAVGA-FSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL  107 (337)
Q Consensus        30 ~~vw~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~  107 (337)
                      +++||+.+++.++.....+ -..- .+.-..+.+...+-      .++.-..+|..+-+++.++.+++.=.++.-+.+.+
T Consensus        70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~L  143 (262)
T COG3823          70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNL  143 (262)
T ss_pred             eEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------ccceeEEEChHHhhhhcccccCCcceeeecCCcce
Confidence            5899999999887754431 1100 11122333333333      47888899999999999998888878877766665


Q ss_pred             EEEECC--eEEEEECCCCeee
Q 019672          108 VIVLRE--KTYIYDANTLAIL  126 (337)
Q Consensus       108 ~v~~d~--~i~i~d~~~~~~~  126 (337)
                      +.. ||  .++.-|-++...+
T Consensus       144 ims-dGsatL~frdP~tfa~~  163 (262)
T COG3823         144 IMS-DGSATLQFRDPKTFAEL  163 (262)
T ss_pred             Eee-CCceEEEecCHHHhhhc
Confidence            443 44  4555555544333

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.14  E-value=4  Score=36.36  Aligned_cols=221  Identities=16%  Similarity=0.215  Sum_probs=94.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEe-CCCCcE---EEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFD-SSTGRL---CYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~-~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +-+.++..+.|..+..-+++|....  |+. .+.|+-   .......  ......+.+..+...+++.       .+ +.
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-------~g-~l   83 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-------PG-LL   83 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-------TT-EE
T ss_pred             CCCCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-------Cc-eE
Confidence            4466899999997777788887653  333 333332   2111111  1222333444444444432       22 33


Q ss_pred             EEECCCCCEEEEEE----cCCceeE-EEEcCCeEEEEECCeEEEEECC-CCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           79 LFNTTTGTALRELN----FLTSILA-VRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        79 iwd~~~~~~~~~~~----~~~~v~~-i~~~~~~~~v~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +--...|+.=..+.    .+..... ..+.++...++.+. -.||-.. .++.-+.+.. .....+..+...+++.++++
T Consensus        84 l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vav  161 (302)
T PF14870_consen   84 LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAV  161 (302)
T ss_dssp             EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEE
T ss_pred             EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEE
Confidence            33333333222222    1222222 23344544444432 1233222 2322222221 12234556677889999988


Q ss_pred             cCCCCccEE-EEEEccCC-cccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEE-cCCCceeEe--eccCCcceeEE
Q 019672          153 PASTTKGSV-LVYNVMEL-HSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATKSYS--FRRGTYPSTIF  223 (337)
Q Consensus       153 ~~~~~dg~v-~i~d~~~~-~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd-~~~~~~~~~--~~~~~~~~~i~  223 (337)
                      +.   .|.+ .-||--.. =..|    ...|.++.|+|++.+.+.+ ..|. |+.=+ ...++...+  .......-.+.
T Consensus       162 s~---~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~l  236 (302)
T PF14870_consen  162 SS---RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGIL  236 (302)
T ss_dssp             ET---TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EE
T ss_pred             EC---cccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeE
Confidence            76   3544 46775422 1122    2789999999998876654 6664 55544 122222111  11101112389


Q ss_pred             EEEeecCCCcccEEEEEeCCCcE
Q 019672          224 SLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      .++|.+++.   ..|+|+. |++
T Consensus       237 d~a~~~~~~---~wa~gg~-G~l  255 (302)
T PF14870_consen  237 DLAYRPPNE---IWAVGGS-GTL  255 (302)
T ss_dssp             EEEESSSS----EEEEEST-T-E
T ss_pred             EEEecCCCC---EEEEeCC-ccE
Confidence            999999987   6665554 544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.13  E-value=0.89  Score=42.45  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             EEeeCCCccEEEEc----CCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCC----------cEEEE
Q 019672          140 AFSPSLNACFLAVP----ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQG----------TIIRV  201 (337)
Q Consensus       140 ~~~~~~~~~~la~~----~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg----------~~i~v  201 (337)
                      .++++|++.++|++    |+ +...++++|+.+++.+..    ..-..++|.+||+.|+....+.          ..|+.
T Consensus       128 ~~~~Spdg~~la~~~s~~G~-e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGS-EWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTS-SEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCC-ceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            56777888888855    33 456799999999876643    1122399999999877665332          23567


Q ss_pred             EEcCCCcee--EeeccCCccee-EEEEEeecCCCcccEEEEEeCCC----cEEEEecCCC
Q 019672          202 FLVSEATKS--YSFRRGTYPST-IFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFA  254 (337)
Q Consensus       202 wd~~~~~~~--~~~~~~~~~~~-i~~l~fs~dg~~~~~las~s~dg----~v~iw~l~~~  254 (337)
                      |.+.++..-  ..+.. ..... ...+..|+|++   +|+..+..+    .+++.++...
T Consensus       207 ~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~---~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGR---YLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSS---EEEEEEESSSSEEEEEEEECCCT
T ss_pred             EECCCChHhCeeEEee-cCCCcEEEEEEecCccc---EEEEEEEccccCCeEEEEecccc
Confidence            777666432  22222 22222 56789999999   766544332    3777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.76  E-value=0.073  Score=44.40  Aligned_cols=97  Identities=9%  Similarity=0.030  Sum_probs=45.7

Q ss_pred             CCceEEEEECCCCCEEEEE-EcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeee-eecCCCCCceEEEEeeCCCccE
Q 019672           73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +|+.|+-++++..+.-..- .+...-..+.-....+++.+ ++.|++|+........ .+....+ ...+.+ +..+...
T Consensus        38 a~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-~i~~~I-p~~~~~~  115 (238)
T KOG2444|consen   38 ADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-SIDLGI-PNGRDSS  115 (238)
T ss_pred             CCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc-cceecc-ccccccc
Confidence            4677777766543322211 11111111111233455544 8999999876322211 1111111 122333 3333323


Q ss_pred             EEEcCCCCccEEEEEEccCCccc
Q 019672          150 LAVPASTTKGSVLVYNVMELHSH  172 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~  172 (337)
                      +++.+. ++|.|+.|+++-.+.+
T Consensus       116 ~~c~~~-~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen  116 LGCVGA-QDGRIRACNIKPNKVL  137 (238)
T ss_pred             eeEEec-cCCceeeeccccCcee
Confidence            444443 6999999998866543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.71  E-value=4.7  Score=35.69  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=81.5

Q ss_pred             CceEEEEECCCCCEEEEEEcCC-------ceeEEEEcC--C----eE-EEEE--CCeEEEEECCCCeeeeeecCCC--CC
Q 019672           74 PRRLCLFNTTTGTALRELNFLT-------SILAVRLNK--K----RL-VIVL--REKTYIYDANTLAILDTIDTVP--NL  135 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~-------~v~~i~~~~--~----~~-~v~~--d~~i~i~d~~~~~~~~~~~~~~--~~  135 (337)
                      .-+|.+||+++++.++++.++.       ...++.++.  .    .. +++-  ...|.|||+.+++..+......  .+
T Consensus        33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            4589999999999999988764       345566644  1    33 3333  4589999999987654442211  11


Q ss_pred             ---------------ceEEEEee---CCCccEEEEcCCCCccEEEEEEccCCcc--------c------c----c-CceE
Q 019672          136 ---------------KGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHS--------H------C----E-APLA  178 (337)
Q Consensus       136 ---------------~~~~~~~~---~~~~~~la~~~~~~dg~v~i~d~~~~~~--------~------~----~-~~i~  178 (337)
                                     .++..++.   ++++..|.+..-   ..-++|.+.+.-.        .      +    + ....
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l---ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~  189 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL---SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD  189 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET---T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeC---CCCcEEEEEHHHhhCccccccccccccceeccccCCCCc
Confidence                           11222222   224444444321   1123333321100        0      0    0 3567


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEEcCCCc---eeEeeccCCc-ceeEEEEEeec--CCC
Q 019672          179 AIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTY-PSTIFSLSFGQ--SMQ  232 (337)
Q Consensus       179 ~~~~s~dg~~lat~s~dg~~i~vwd~~~~~---~~~~~~~~~~-~~~i~~l~fs~--dg~  232 (337)
                      .++++++|.+..+--+... |..|+..+.-   .+..+..... -.-+.++++.+  +|.
T Consensus       190 g~~~D~~G~ly~~~~~~~a-I~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNA-IGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             EEEEETTTEEEEEECCCTE-EEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             eEEECCCCcEEEecCCCCe-EEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence            8899999998888888876 5789987622   1122221111 12267788888  776

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.61  E-value=5.9  Score=39.37  Aligned_cols=119  Identities=9%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             CceEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCC-----------c---------eeEeeccCCcceeEEEEEee--cC
Q 019672          175 APLAAIVLSS--NGMYIATASEQGTIIRVFLVSEA-----------T---------KSYSFRRGTYPSTIFSLSFG--QS  230 (337)
Q Consensus       175 ~~i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~-----------~---------~~~~~~~~~~~~~i~~l~fs--~d  230 (337)
                      ..|+.+....  +...|+.+.+||.+ -+|.+++-           +         +...++   -.+..++|+++  ..
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V-~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~  176 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDV-LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKK  176 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeE-EEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCc
Confidence            4466666654  34578889999985 69976210           0         011111   12358899998  77


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCccc---CEEEEEEeCC
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR---ASVSVITYNG  307 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~l~~~~~dg  307 (337)
                      .+   +||++++...|.||-.....+......+.. ....+|.              +.+++...+.   ..|++.+-.|
T Consensus       177 ~r---lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~-~~hNIP~--------------VSFl~~~~d~~G~v~v~a~dI~G  238 (717)
T PF08728_consen  177 SR---LIAVSSNSQEVTVFAFALVDERFYHVPSHQ-HSHNIPN--------------VSFLDDDLDPNGHVKVVATDISG  238 (717)
T ss_pred             ce---EEEEecCCceEEEEEEeccccccccccccc-cccCCCe--------------eEeecCCCCCccceEEEEEeccC
Confidence            77   999999999999987765422111010000 1122221              1122222222   2788899999


Q ss_pred             cEEEEEEe
Q 019672          308 YFVEYIFS  315 (337)
Q Consensus       308 ~~~~~~~~  315 (337)
                      .+.+|.+.
T Consensus       239 ~v~~~~I~  246 (717)
T PF08728_consen  239 EVWTFKIK  246 (717)
T ss_pred             cEEEEEEE
Confidence            99999984

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.56  E-value=4.7  Score=35.23  Aligned_cols=67  Identities=10%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ..|-+|+.+.+..+++..|-.|+..-+||..+|..+..-..    .....|+  +...   =+++.|.+|.+.++.
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva--~~~~---gf~vssg~G~~~~~s  346 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVA--AAKG---GFAVSSGQGRIIFYS  346 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccce--eccC---ceEEecCCceEEecc
Confidence            77899999988888888888888777999999987654321    1122233  3333   477778889998874

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.48  E-value=3.5  Score=39.55  Aligned_cols=139  Identities=12%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             CceeEEEEcCCeEEEEE-----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC----c-cEEEEcCCCCccEEEEE
Q 019672           95 TSILAVRLNKKRLVIVL-----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----A-CFLAVPASTTKGSVLVY  164 (337)
Q Consensus        95 ~~v~~i~~~~~~~~v~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~la~~~~~~dg~v~i~  164 (337)
                      +++.+++|.....++.+     .+.+++=|   .+.+.+|+      -++++++.|.    . .+||+.-   ...|.||
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE------hV~GlsW~P~~~~~~paLLAVQH---kkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE------HVHGLSWAPPCTADTPALLAVQH---KKHVTVW   87 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc------eeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence            47788888654444433     34443322   23344443      2445555443    2 4677654   6889999


Q ss_pred             EccCC-----ccc--cc------Cc--eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-ee-EeeccCCcceeEEEEEe
Q 019672          165 NVMEL-----HSH--CE------AP--LAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KS-YSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       165 d~~~~-----~~~--~~------~~--i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-~~-~~~~~~~~~~~i~~l~f  227 (337)
                      .+.-.     +..  ++      -|  -..+.|+|....|+.=..+...| ++++.... .+ ..++   ..+.|+|.+|
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~---~~G~IhCACW  163 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK---TSGLIHCACW  163 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc---CCceEEEEEe
Confidence            88622     111  11      22  24678999988777655544333 66665332 22 2221   2456999999


Q ss_pred             ecCCCcccEEEEEeCCC-cEEEEecC
Q 019672          228 GQSMQFQDILVATSSSG-SLHVFSPG  252 (337)
Q Consensus       228 s~dg~~~~~las~s~dg-~v~iw~l~  252 (337)
                      .+||+   .|+++-... --+|||-.
T Consensus       164 T~DG~---RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  164 TKDGQ---RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCcCC---EEEEEeCCeEEEEEecCc
Confidence            99999   877775542 24678743

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=93.45  E-value=5.4  Score=35.59  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             EcCCCCEEEEEcCCceEEEeCCC--CcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672           15 FNQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus        15 fs~dg~~la~g~~~g~~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      +..++++|+.|++.|+.+.+...  .+...-.....+..+++...-+.++++++      ..+.|+.+++.
T Consensus         9 ~~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsg------k~~~L~~~~L~   73 (302)
T smart00036        9 ITCDGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISG------KKPQLYSHPLS   73 (302)
T ss_pred             cccCCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeC------CcceEEEEEHH
Confidence            34455789999999997777654  34444445567778888888888888886      24569999973

Unpublished observations.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.37  E-value=6.9  Score=36.57  Aligned_cols=128  Identities=16%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             CCceEEEEECCCCC-----EEEEEEcCCceeEEEEcC-------CeEEEEECCeEEEEECCC--Ce-------eeeeecC
Q 019672           73 SPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNK-------KRLVIVLREKTYIYDANT--LA-------ILDTIDT  131 (337)
Q Consensus        73 ~d~~v~iwd~~~~~-----~~~~~~~~~~v~~i~~~~-------~~~~v~~d~~i~i~d~~~--~~-------~~~~~~~  131 (337)
                      -.|.++|++...+.     .+.+.....||..+...+       ..++|....++.||.+..  +.       .+..+..
T Consensus        45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye  124 (418)
T PF14727_consen   45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE  124 (418)
T ss_pred             cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence            47999999986543     556777888999987632       345555588999998821  11       1111111


Q ss_pred             C---CCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEE
Q 019672          132 V---PNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVF  202 (337)
Q Consensus       132 ~---~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vw  202 (337)
                      |   ......+.-.+.+.  ..++++-+  -||.+.+|+-......+.    --...++|.|.-..|++++.+.. +.-|
T Consensus       125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~-l~~Y  201 (418)
T PF14727_consen  125 HSLQRTAYNMCCGPFGGVKGRDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWT-LECY  201 (418)
T ss_pred             EecccceeEEEEEECCCCCCceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCcee-EEEe
Confidence            1   11112222222221  34666666  599999998765432111    11233456666667888877654 3444


Q ss_pred             E
Q 019672          203 L  203 (337)
Q Consensus       203 d  203 (337)
                      .
T Consensus       202 k  202 (418)
T PF14727_consen  202 K  202 (418)
T ss_pred             c
Confidence            4

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.99  E-value=0.42  Score=28.74  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=23.7

Q ss_pred             CceEEEEeCCCCC---EEEEEeCCCcEEEEEEcCC
Q 019672          175 APLAAIVLSSNGM---YIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       175 ~~i~~~~~s~dg~---~lat~s~dg~~i~vwd~~~  206 (337)
                      +.|.++.|||+..   +||-+-..|. +.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            4689999998544   7776665665 79999985

It contains a characteristic DLL sequence motif.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.87  E-value=8.1  Score=36.00  Aligned_cols=188  Identities=13%  Similarity=0.095  Sum_probs=82.6

Q ss_pred             CCCEEEEEcCCc--eEEEeCCCC--cE--EEEEee------CCEE---EEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672           18 DNSGFALSTKDG--FKIFDSSTG--RL--CYERAV------GAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus        18 dg~~la~g~~~g--~~vw~~~~~--~~--~~~~~~------~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +.++|++.+-.+  +.|+|+.+.  +.  ....+.      .+..   .+-+.++++.++..-|+... ...+.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence            456777776443  677787643  22  212211      1111   12344555555544333222 34678999998


Q ss_pred             CCCCEEEEEEcCC----ceeEEEEcCCeEEE-EE----------------------CCeEEEEECCCCeeeeeecCCCCC
Q 019672           83 TTGTALRELNFLT----SILAVRLNKKRLVI-VL----------------------REKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        83 ~~~~~~~~~~~~~----~v~~i~~~~~~~~v-~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      ++.+.+...+...    --.++.+.+.+.+. .+                      .+++.+||+.+.+.++++....+.
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            8887777765432    22445555443222 11                      258999999999999999876442


Q ss_pred             ceEE--EEeeCCCccEEEEcCCCCccEEEEE-EccCCcccc--------------------------cCceEEEEeCCCC
Q 019672          136 KGLC--AFSPSLNACFLAVPASTTKGSVLVY-NVMELHSHC--------------------------EAPLAAIVLSSNG  186 (337)
Q Consensus       136 ~~~~--~~~~~~~~~~la~~~~~~dg~v~i~-d~~~~~~~~--------------------------~~~i~~~~~s~dg  186 (337)
                      ...+  -+..+|+..+=+++.. -..+|..| ....++-..                          ..-|+.|.+|.|.
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            2222  3344555444222221 23445443 322222100                          0237899999999


Q ss_pred             CEEEEEe-CCCcEEEEEEcCCCc
Q 019672          187 MYIATAS-EQGTIIRVFLVSEAT  208 (337)
Q Consensus       187 ~~lat~s-~dg~~i~vwd~~~~~  208 (337)
                      ++|..++ .+|. ||-||+.+..
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP~  345 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDPF  345 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SSTT
T ss_pred             CEEEEEcccCCc-EEEEecCCCC
Confidence            9888766 5676 7999997754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.68  E-value=1.5  Score=41.25  Aligned_cols=82  Identities=15%  Similarity=0.212  Sum_probs=53.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEE-EE---EE----cCCCceeEeec---c------CCcceeEEEEEeecCCCcccEE
Q 019672          175 APLAAIVLSSNGMYIATASEQGTII-RV---FL----VSEATKSYSFR---R------GTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i-~v---wd----~~~~~~~~~~~---~------~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      -.|..+..|+.|..+|-++.+|-+| .+   |-    +++|+.....+   .      ....-.+..++|+|++-.-..|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            4578888999999999999999532 11   21    23443322111   0      0111236778999987111378


Q ss_pred             EEEeCCCcEEEEecCCCcc
Q 019672          238 VATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       238 as~s~dg~v~iw~l~~~~~  256 (337)
                      ..-++|++|+|||+....+
T Consensus       184 ~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEecCcEEEEEecCCcch
Confidence            8899999999999987654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.62  E-value=2.8  Score=41.08  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=58.7

Q ss_pred             CeEEEEE--CCeEEEEECCCCeeeeeecC-CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc-----CCcc----c
Q 019672          105 KRLVIVL--REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-----ELHS----H  172 (337)
Q Consensus       105 ~~~~v~~--d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~-----~~~~----~  172 (337)
                      ++++++.  ...+.|||.+.+....+-.. ..++..-..+...|+++.+.+.|.  .+.|.+|--.     ....    +
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf--~~~v~l~~Q~R~dy~~~~p~w~~i  118 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF--PHHVLLYTQLRYDYTNKGPSWAPI  118 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc--CcEEEEEEccchhhhcCCccccee
Confidence            4444444  44899999988865443322 123333345666788888777774  6888887432     1110    0


Q ss_pred             -------cc-CceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          173 -------CE-APLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       173 -------~~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                             ++ .+|....|-++|.+++.++.   .+.|+|-
T Consensus       119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk  155 (631)
T PF12234_consen  119 RKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDK  155 (631)
T ss_pred             EEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECC
Confidence                   12 78999999999987665533   2567763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.18  E-value=5.4  Score=39.16  Aligned_cols=71  Identities=14%  Similarity=0.101  Sum_probs=49.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee--cCCCcccEEEEEeCCCcEEEEe
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ....-+.-|.-+ .+|...++++.+.|||.+.+...++-.. .....|.++.|.  |||+   .+++-+-...|.++-
T Consensus        30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q---siLaVGf~~~v~l~~  102 (631)
T PF12234_consen   30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ---SILAVGFPHHVLLYT  102 (631)
T ss_pred             CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC---EEEEEEcCcEEEEEE
Confidence            344445555543 4666677788889999999886654432 124568899886  8898   777777788898885

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=91.94  E-value=13  Score=36.30  Aligned_cols=187  Identities=9%  Similarity=0.035  Sum_probs=89.3

Q ss_pred             CCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCeeeee
Q 019672           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDT  128 (337)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~~~~  128 (337)
                      .+.+.++||.......-+++..||+.+++....-..+.  .-.++....+.+++.+  +     .++..||..+.+=. .
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~  381 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-M  381 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-E
Confidence            34555555421111123578889998876432211111  1122333345555544  2     25888998765321 1


Q ss_pred             ecCCCCCc-eEEEEeeCCCccEEEEcCCCC---------------------ccEEEEEEccCCccc-----ccCceEEEE
Q 019672          129 IDTVPNLK-GLCAFSPSLNACFLAVPASTT---------------------KGSVLVYNVMELHSH-----CEAPLAAIV  181 (337)
Q Consensus       129 ~~~~~~~~-~~~~~~~~~~~~~la~~~~~~---------------------dg~v~i~d~~~~~~~-----~~~~i~~~~  181 (337)
                      +..-+.+. ...+...  ++...+.+|.+.                     -..+..||..+.+-.     .......-+
T Consensus       382 ~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~  459 (557)
T PHA02713        382 LPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV  459 (557)
T ss_pred             CCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence            11111111 1112222  345666666421                     135778887765321     111111112


Q ss_pred             eCCCCCEEEEEeCCC-----cEEEEEEcCC-Cc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC--cEEEEec
Q 019672          182 LSSNGMYIATASEQG-----TIIRVFLVSE-AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSP  251 (337)
Q Consensus       182 ~s~dg~~lat~s~dg-----~~i~vwd~~~-~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg--~v~iw~l  251 (337)
                      ..-+|+..+.|+.++     ..+..||..+ .+  .+..+...  ......+++  +|+   +.++|+.++  ++..||.
T Consensus       460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~--~~~---iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH--DNT---IMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE--CCE---EEEEeeecceeehhhcCc
Confidence            233567777776542     2246788876 33  22223211  111222222  677   899999888  6777776


Q ss_pred             CCC
Q 019672          252 GFA  254 (337)
Q Consensus       252 ~~~  254 (337)
                      .+.
T Consensus       533 ~~~  535 (557)
T PHA02713        533 YTY  535 (557)
T ss_pred             ccc
Confidence            554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.89  E-value=1  Score=38.13  Aligned_cols=61  Identities=20%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE---------------EcCCceeEEEEcCCeEEEEE--CCeEE
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL---------------NFLTSILAVRLNKKRLVIVL--REKTY  116 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~v~~--d~~i~  116 (337)
                      +....+++..++.       +|.+.+||+++++.+...               .....|..+.++.++.-++.  ++..+
T Consensus        18 l~~~~~~Ll~iT~-------~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y   90 (219)
T PF07569_consen   18 LECNGSYLLAITS-------SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY   90 (219)
T ss_pred             EEeCCCEEEEEeC-------CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence            4445666666654       899999999998765432               11234555555554433322  55666


Q ss_pred             EEECC
Q 019672          117 IYDAN  121 (337)
Q Consensus       117 i~d~~  121 (337)
                      .|+..
T Consensus        91 ~y~~~   95 (219)
T PF07569_consen   91 SYSPD   95 (219)
T ss_pred             Eeccc
Confidence            66643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.85  E-value=1.1  Score=26.27  Aligned_cols=33  Identities=9%  Similarity=0.130  Sum_probs=24.2

Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672          184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  216 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~  216 (337)
                      |+|++|.++......|.++|..+++.+.++.-+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            678877777654444689999998888777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PRK10115 protease 2; Provisional

Probab=91.77  E-value=16  Score=36.81  Aligned_cols=237  Identities=12%  Similarity=0.059  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCEEEEEcCC-c-----eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672           10 VFFVSFNQDNSGFALSTKD-G-----FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~-g-----~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      +..+.++|||++|+.+.+. |     +++.|+.+++.+...-...-..+.+..+++.+.+...... ......|..+++.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~-~~~~~~v~~h~lg  207 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPV-TLLPYQVWRHTIG  207 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCC-CCCCCEEEEEECC
Confidence            7778999999999887653 3     4677888886432221111123566667777777654211 0134689999998


Q ss_pred             CCC--EEEEEEc-CCcee-EEEE--cCCeEEEEE----CCeEEEEECC--CCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           84 TGT--ALRELNF-LTSIL-AVRL--NKKRLVIVL----REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        84 ~~~--~~~~~~~-~~~v~-~i~~--~~~~~~v~~----d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ++.  -..-+.. ..... .+..  +...+++..    ++.+.+++..  +++....+....+  ..+.+....+..++.
T Consensus       208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ly~~  285 (686)
T PRK10115        208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD--HEYSLDHYQHRFYLR  285 (686)
T ss_pred             CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC--CEEEEEeCCCEEEEE
Confidence            882  2222222 12221 2222  334444433    4578888842  3332212221111  222222223333333


Q ss_pred             EcCCCCccEEEEEEccC-C--ccc--c-c-CceEEEEeCCCCCEEEEEeCCCcE-EEEEEcCCCceeEeeccCCcceeEE
Q 019672          152 VPASTTKGSVLVYNVME-L--HSH--C-E-APLAAIVLSSNGMYIATASEQGTI-IRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~-~--~~~--~-~-~~i~~~~~s~dg~~lat~s~dg~~-i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      +........|...++.. .  +.+  + . ..|..+.+..+ .++++...+|.. ++++|..+ ..+..+... ....+.
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~-~~~~~l~~~-~~~~~~  362 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKT-REVIGIAFD-DPAYVT  362 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCC-CceEEecCC-CCceEe
Confidence            33211233444445542 1  111  1 1 35777887733 556666666642 23345433 334444311 111233


Q ss_pred             EEEee--cCCCcccEEEEEeCC---CcEEEEecCCC
Q 019672          224 SLSFG--QSMQFQDILVATSSS---GSLHVFSPGFA  254 (337)
Q Consensus       224 ~l~fs--~dg~~~~~las~s~d---g~v~iw~l~~~  254 (337)
                      .+.++  +++.  .++++.+.-   +.+..+|+.+.
T Consensus       363 ~~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        363 WIAYNPEPETS--RLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             eecccCCCCCc--eEEEEEecCCCCCEEEEEECCCC
Confidence            33444  4433  144444433   45777777654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.71  E-value=1.4  Score=37.21  Aligned_cols=66  Identities=21%  Similarity=0.292  Sum_probs=43.3

Q ss_pred             eCCCCCEEEEEeCCCcEEEEEEcCCCceeEee------ccC------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672          182 LSSNGMYIATASEQGTIIRVFLVSEATKSYSF------RRG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF  249 (337)
Q Consensus       182 ~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~------~~~------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw  249 (337)
                      +..++++|.+-+.+|. +++||+.+++.+..-      -..      .....|.++.++.+|.   -+++-+ +|..+.|
T Consensus        18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~---PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV---PIVTLS-NGDSYSY   92 (219)
T ss_pred             EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC---EEEEEe-CCCEEEe
Confidence            3456778888888887 588998887754321      000      1223478888888887   555554 4778888


Q ss_pred             ecC
Q 019672          250 SPG  252 (337)
Q Consensus       250 ~l~  252 (337)
                      +.+
T Consensus        93 ~~~   95 (219)
T PF07569_consen   93 SPD   95 (219)
T ss_pred             ccc
Confidence            754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.51  E-value=5.2  Score=30.77  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=39.2

Q ss_pred             CceEEEEECC--------CCCEEEEEEcCCceeEEEE-------cCCeEEEEECCeEEEEECCCCeeeee
Q 019672           74 PRRLCLFNTT--------TGTALRELNFLTSILAVRL-------NKKRLVIVLREKTYIYDANTLAILDT  128 (337)
Q Consensus        74 d~~v~iwd~~--------~~~~~~~~~~~~~v~~i~~-------~~~~~~v~~d~~i~i~d~~~~~~~~~  128 (337)
                      -++|.|.+..        ....+..+.+..+|++++-       ..+-+++++..++..||+....-+..
T Consensus        19 ~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fy   88 (136)
T PF14781_consen   19 GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFY   88 (136)
T ss_pred             CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhh
Confidence            4678888765        3345677788888888753       24667888899999999976654433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.12  E-value=5.7  Score=34.82  Aligned_cols=78  Identities=12%  Similarity=0.140  Sum_probs=60.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ..+.++.|+|+.+.|.+..+....| ||=..+|+.+.++..... +.--.+.+.-+|+   +.++--.++.+.++.++.+
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~i-VElt~~GdlirtiPL~g~-~DpE~Ieyig~n~---fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAI-VELTKEGDLIRTIPLTGF-SDPETIEYIGGNQ---FVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceE-EEEecCCceEEEeccccc-CChhHeEEecCCE---EEEEehhcceEEEEEEcCC
Confidence            5599999999999888888877765 888889999988754321 2234678888898   8888888899999998876


Q ss_pred             ccc
Q 019672          255 INQ  257 (337)
Q Consensus       255 ~~~  257 (337)
                      ...
T Consensus       161 t~~  163 (316)
T COG3204         161 TTV  163 (316)
T ss_pred             ccE
Confidence            543

>PHA03098 kelch-like protein; Provisional

Probab=91.07  E-value=16  Score=35.47  Aligned_cols=186  Identities=8%  Similarity=0.029  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCeeeeee
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTI  129 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~~~~~  129 (337)
                      +.+.++||........+.+..||..+++....-..+.  .-.++....+.+++.+  +     +.+..||..+.+-. ..
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~-~~  373 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR-EE  373 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee-eC
Confidence            4455555432111123468889988876543221111  1122223345555544  2     35778888765321 11


Q ss_pred             cCCCCCceEEEEeeCCCccEEEEcCCCCc----cEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCC----
Q 019672          130 DTVPNLKGLCAFSPSLNACFLAVPASTTK----GSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQG----  196 (337)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~d----g~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg----  196 (337)
                      ...+.+..-.+.... ++.+.+.+|...+    ..+..||..+.+-...     ..-...+...+++..+.|+.++    
T Consensus       374 ~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  452 (534)
T PHA03098        374 PPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI  452 (534)
T ss_pred             CCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC
Confidence            111111111122222 3456666663111    4688899876532111     0001112223566667776432    


Q ss_pred             ---cEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019672          197 ---TIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF  253 (337)
Q Consensus       197 ---~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~  253 (337)
                         ..+.+||..+++-.  ..+...  ......+.  -+++   +++.|+.+     +.|.+||..+
T Consensus       453 ~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~--~~~~---iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        453 KVYNIVESYNPVTNKWTELSSLNFP--RINASLCI--FNNK---IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             cccceEEEecCCCCceeeCCCCCcc--cccceEEE--ECCE---EEEEcCCcCCcccceeEEEeCCC
Confidence               12468888776532  111111  11111122  2666   77777654     4678887654

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=91.03  E-value=11  Score=33.45  Aligned_cols=135  Identities=13%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             eEEEEECCCCeeeeeecCCCC----CceEEEEeeCC--Cc---cEEEEcCCCCccEEEEEEccCCccc---cc-------
Q 019672          114 KTYIYDANTLAILDTIDTVPN----LKGLCAFSPSL--NA---CFLAVPASTTKGSVLVYNVMELHSH---CE-------  174 (337)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~---~~la~~~~~~dg~v~i~d~~~~~~~---~~-------  174 (337)
                      +|.+||+.+.++++++..+..    ...+..+..+.  ..   .+...+.. ..+-|.|+|+.+++.-   +.       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~-~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS-GGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-TTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-CcCcEEEEEccCCcEEEEecCCcceecc
Confidence            678889999988888755432    22344444333  11   23333333 3567999999876531   10       


Q ss_pred             --------------CceEEEEeCC---CCCEEEEEeCCCcEEEEEEcCCC-----ce---------eEeeccCCcceeEE
Q 019672          175 --------------APLAAIVLSS---NGMYIATASEQGTIIRVFLVSEA-----TK---------SYSFRRGTYPSTIF  223 (337)
Q Consensus       175 --------------~~i~~~~~s~---dg~~lat~s~dg~~i~vwd~~~~-----~~---------~~~~~~~~~~~~i~  223 (337)
                                    ..+..++.+|   +|++|.-..-.|.  ++|-+.+.     ..         +..+  +.....-.
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSD  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SEC
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceec--cccCCCCc
Confidence                          4467777766   7777777776654  35554321     11         1111  11112345


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .++++++|.   ++.+--..+.|..|+..++..
T Consensus       190 g~~~D~~G~---ly~~~~~~~aI~~w~~~~~~~  219 (287)
T PF03022_consen  190 GMAIDPNGN---LYFTDVEQNAIGCWDPDGPYT  219 (287)
T ss_dssp             EEEEETTTE---EEEEECCCTEEEEEETTTSB-
T ss_pred             eEEECCCCc---EEEecCCCCeEEEEeCCCCcC
Confidence            688999998   888999999999999876543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.59  E-value=18  Score=38.23  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             CeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEE-eeCCC-----c-cEEEEcCCCCccEEEEEEccC----Ccc--
Q 019672          105 KRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAF-SPSLN-----A-CFLAVPASTTKGSVLVYNVME----LHS--  171 (337)
Q Consensus       105 ~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~-~~la~~~~~~dg~v~i~d~~~----~~~--  171 (337)
                      ++..+..|+.+.+|+..++.....+.+..+..--+.+ .|.|.     = .+|+.+   +--.|.|+-+.-    ...  
T Consensus        91 ~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   91 GRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             cceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCcccc
Confidence            3455556999999999887666666554443222222 22221     1 122222   234466654321    111  


Q ss_pred             ------c--ccCceEEEEeCCCCCEEEEEeCCCcEEE-EEEcCCC---c---ee--------------EeeccCCcceeE
Q 019672          172 ------H--CEAPLAAIVLSSNGMYIATASEQGTIIR-VFLVSEA---T---KS--------------YSFRRGTYPSTI  222 (337)
Q Consensus       172 ------~--~~~~i~~~~~s~dg~~lat~s~dg~~i~-vwd~~~~---~---~~--------------~~~~~~~~~~~i  222 (337)
                            +  ....|+|+....+|+.+.+| .||.+.. +|...+|   +   ++              ..+. +.+..+|
T Consensus       168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI  245 (1311)
T KOG1900|consen  168 FNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPI  245 (1311)
T ss_pred             cccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcc
Confidence                  0  11568999988899876655 5554322 2232222   1   10              1111 2345578


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ..++.....+   .|-+-+..|+|.+|++...
T Consensus       246 ~qi~ID~SR~---IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  246 RQITIDNSRN---ILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eeeEeccccc---eeeeeccCceEEEEEccCC
Confidence            8999987777   9999999999999999874

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=6.7  Score=40.65  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             CccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC--cceeEEEEEeec
Q 019672          157 TKGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT--YPSTIFSLSFGQ  229 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~l~fs~  229 (337)
                      .|+.|++.-+.-.....+     ...+|++|+|.|+.++.|-..|+++ =|- .+++...++.+..  ....|.+|+|-.
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~v-Qy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEV-QYE-PSLEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEE-Eee-cccceeecccCCCcCCCcceeEEEEec
Confidence            478888877654433322     6789999999999999999999854 332 2333333332211  124599999987


Q ss_pred             CCCcccEEEEEeC
Q 019672          230 SMQFQDILVATSS  242 (337)
Q Consensus       230 dg~~~~~las~s~  242 (337)
                      .-.   ||++-+.
T Consensus       254 t~e---flvvy~n  263 (1405)
T KOG3630|consen  254 TQE---FLVVYGN  263 (1405)
T ss_pred             cee---EEEEecc
Confidence            766   7776543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=15  Score=32.33  Aligned_cols=156  Identities=16%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             EEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672           87 ALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      .+..+....-+.++.+++++..++- +.-++|.|+.+...-..+....-.....++..+++  +...+.  .+.-..+.|
T Consensus        79 l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn--~aYVad--lddgfLivd  154 (370)
T COG5276          79 LLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN--YAYVAD--LDDGFLIVD  154 (370)
T ss_pred             eEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC--EEEEee--ccCcEEEEE
Confidence            4455666777889999999999988 66899999987643333211111123345555554  433333  234477788


Q ss_pred             ccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce-eEEEEEeecCCCcccE
Q 019672          166 VMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQSMQFQDI  236 (337)
Q Consensus       166 ~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~-~i~~l~fs~dg~~~~~  236 (337)
                      +.+.....-        ..-..++.|  |++...+..|+.+ .|-|+.+.....-+. .-... .++++..|++--   +
T Consensus       155 vsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL-~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~---y  227 (370)
T COG5276         155 VSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL-TIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRA---Y  227 (370)
T ss_pred             CCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe-EEEEccCCCCCeEEE-EEecCCceEEEEecCCee---E
Confidence            876553221        233456665  4566666677774 789987654322111 11112 478888887765   5


Q ss_pred             EEEEeCCCcEEEEecCCCc
Q 019672          237 LVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~  255 (337)
                      ++....  -+-+-|...++
T Consensus       228 ~vvy~e--gvlivd~s~~s  244 (370)
T COG5276         228 LVVYDE--GVLIVDVSGPS  244 (370)
T ss_pred             EEEccc--ceEEEecCCCC
Confidence            554432  35556655544

>PHA02713 hypothetical protein; Provisional

Probab=88.83  E-value=25  Score=34.43  Aligned_cols=117  Identities=9%  Similarity=0.070  Sum_probs=57.0

Q ss_pred             ceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEEC--------CeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672           75 RRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      ..+..||..+++...--..+.+.  .++..-.+.+++++.        +.+..||..+..- ..+..-+.+..-.+...-
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEE
Confidence            46788998887644322222211  233444566666541        2477888876532 122111111111222221


Q ss_pred             CCccEEEEcCCCC---ccEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeCC
Q 019672          145 LNACFLAVPASTT---KGSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASEQ  195 (337)
Q Consensus       145 ~~~~~la~~~~~~---dg~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~d  195 (337)
                       ++.+.+.+|.+.   -..+..||..+.+-..     .  .....+++  +|+..+.|+.+
T Consensus       351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence             345667777421   1358889987643211     1  11222333  67888888765

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=88.46  E-value=14  Score=31.01  Aligned_cols=144  Identities=15%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             eEEEEcC-CeEEEEE-CCeEEEEECC--CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC-cc---EEEEE---Ec
Q 019672           98 LAVRLNK-KRLVIVL-REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-KG---SVLVY---NV  166 (337)
Q Consensus        98 ~~i~~~~-~~~~v~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-dg---~v~i~---d~  166 (337)
                      ..+...+ +.++++. ...|.+|++.  ..+.+.++.+-+   .+..+..+..|.++++--.+. ..   .+++|   +.
T Consensus        21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVG---RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchh---heeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence            3444445 7777755 6799999997  345667776642   345555556666887654211 12   46664   32


Q ss_pred             cC--Cccc------c---------------------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce------eE
Q 019672          167 ME--LHSH------C---------------------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK------SY  211 (337)
Q Consensus       167 ~~--~~~~------~---------------------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~------~~  211 (337)
                      ..  ...+      |                     ..++.+++.-|-..-|+.|+.+ + +.||.+.....      +-
T Consensus        98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~-l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-K-LVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-E-EEEEEEEEEEEecccccEE
Confidence            21  0000      0                     0467788887743345566665 3 46888754332      11


Q ss_pred             eecc----CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          212 SFRR----GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       212 ~~~~----~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .|.+    .+..-...-++|..  .   |+|..++. .++|+.+.
T Consensus       176 DFe~~l~~~~~~~~p~~v~ic~--~---yiA~~s~~-ev~Vlkl~  214 (215)
T PF14761_consen  176 DFERSLIDHIDNFKPTQVAICE--G---YIAVMSDL-EVLVLKLE  214 (215)
T ss_pred             echhhhhheecCceEEEEEEEe--e---EEEEecCC-EEEEEEEe
Confidence            1211    01111245667763  3   78877765 68888764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.38  E-value=16  Score=31.65  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             ceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE-EccCCc
Q 019672           96 SILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY-NVMELH  170 (337)
Q Consensus        96 ~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~-d~~~~~  170 (337)
                      .+...+++++.  ++++.  ++.-.+|-...+.....+..   ...+..-++++++...+...  .+...+++ +..++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---g~~l~~PS~d~~g~~W~v~~--~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---GGSLTRPSWDPDGWVWTVDD--GSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---CCccccccccCCCCEEEEEc--CCCceEEEEecCCCc
Confidence            45555665543  43434  44333333333332223221   12455556667665555544  24445555 333332


Q ss_pred             ccc-------c-CceEEEEeCCCCCEEEEEeC---CCcEEEEEEcC---CC--cee-EeeccC-CcceeEEEEEeecCCC
Q 019672          171 SHC-------E-APLAAIVLSSNGMYIATASE---QGTIIRVFLVS---EA--TKS-YSFRRG-TYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       171 ~~~-------~-~~i~~~~~s~dg~~lat~s~---dg~~i~vwd~~---~~--~~~-~~~~~~-~~~~~i~~l~fs~dg~  232 (337)
                      ...       . ..|.++.+||||.++|....   ++. +.|=-+.   .+  ..+ ..+... .....+.+++|.+++.
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~-v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR-VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe-EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            211       1 28999999999999988773   343 3444332   23  111 111111 1123588999999998


Q ss_pred             cccEEEEEeCCCc
Q 019672          233 FQDILVATSSSGS  245 (337)
Q Consensus       233 ~~~~las~s~dg~  245 (337)
                         +++.+...+.
T Consensus       179 ---L~V~~~~~~~  188 (253)
T PF10647_consen  179 ---LVVLGRSAGG  188 (253)
T ss_pred             ---EEEEeCCCCC
Confidence               6665555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.02  E-value=23  Score=33.11  Aligned_cols=39  Identities=18%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      ..+.+++.+|++++.|+..+=|++ .|+|+.++..+.-++
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV-~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRV-LLIDVARGIVVRMWK  346 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcE-EEEECCCChhhhhhc
Confidence            347899999999988887777884 699999998776553

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.84  E-value=17  Score=36.71  Aligned_cols=68  Identities=13%  Similarity=0.233  Sum_probs=46.9

Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccC----------Ccc--cc--------------cCceEEEEeCCC---CC
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVME----------LHS--HC--------------EAPLAAIVLSSN---GM  187 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~----------~~~--~~--------------~~~i~~~~~s~d---g~  187 (337)
                      .+.-+..++++.++|..|.   ..|.|..+..          ++.  .+              ...|..+.|+|.   +.
T Consensus        86 ~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3456677888999998883   4466655532          111  11              156899999996   57


Q ss_pred             EEEEEeCCCcEEEEEEcCCCc
Q 019672          188 YIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       188 ~lat~s~dg~~i~vwd~~~~~  208 (337)
                      .|+.=.+|++ +|+||+...+
T Consensus       163 ~l~vLtsdn~-lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNT-LRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCE-EEEEecCCCC
Confidence            8888888987 7999997654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.61  E-value=32  Score=34.29  Aligned_cols=153  Identities=14%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             EEEEEccCCC-EEEEEeCCCCCCCCCceEEEEECCCCCEEEE--E---EcCCceeEEEEcCCeEEEEE-CCeEEEE-ECC
Q 019672           50 SIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTALRE--L---NFLTSILAVRLNKKRLVIVL-REKTYIY-DAN  121 (337)
Q Consensus        50 ~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~--~---~~~~~v~~i~~~~~~~~v~~-d~~i~i~-d~~  121 (337)
                      ..+.|.|+.+ .++++.       .++++.++++-. +.+..  .   .....|....+..+++++.+ ++.+.+- +..
T Consensus        85 ~lI~mgWs~~eeLI~v~-------k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~  156 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQ-------KDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVE  156 (829)
T ss_pred             CeeeecccCCceEEEEe-------ccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCC
Confidence            5566666654 344443       489999999753 22222  2   12235666666667777766 6655543 333


Q ss_pred             CCeeeeeecC-CCCCceEEEEeeCCC---ccEEEEcCCCCccEEEEEEccCCcc-cc-----cCceEEEEeCCCCCEEEE
Q 019672          122 TLAILDTIDT-VPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHS-HC-----EAPLAAIVLSSNGMYIAT  191 (337)
Q Consensus       122 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~la~~~~~~dg~v~i~d~~~~~~-~~-----~~~i~~~~~s~dg~~lat  191 (337)
                      .. .+..+.. +.+.-.-.+++..++   ...+.-... ..+ ..++-...... .+     ...+..+++||++++||-
T Consensus       157 ~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laL  233 (829)
T KOG2280|consen  157 EP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLAL  233 (829)
T ss_pred             cc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEE
Confidence            32 2222221 111111122222211   111111110 000 01111111111 11     156888999999999999


Q ss_pred             EeCCCcEEEEEEcCCCceeEeec
Q 019672          192 ASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       192 ~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      =.++|. |.+-+....+.+.++.
T Consensus       234 yt~~G~-i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  234 YTETGK-IWVVSIDLSQILCEFN  255 (829)
T ss_pred             EecCCc-EEEEecchhhhhhccC
Confidence            999997 5777777777766665

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=86.57  E-value=2.5  Score=27.50  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=26.9

Q ss_pred             cCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeee
Q 019672          297 RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL  332 (337)
Q Consensus       297 ~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  332 (337)
                      .++..+...+|+++||.+++.+.+   ..|.++|.+
T Consensus        29 ~N~Fav~~e~~~iKIfkyd~~tNe---i~L~KE~~~   61 (63)
T PF14157_consen   29 HNHFAVVDEDGQIKIFKYDEDTNE---ITLKKEFYA   61 (63)
T ss_dssp             TTEEEEE-ETTEEEEEEEETTTTE---EEEEEEEEH
T ss_pred             CCEEEEEecCCeEEEEEeCCCCCe---EEEEEeeec
Confidence            367777789999999999999997   788888764

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.45  E-value=3.3  Score=34.59  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=29.1

Q ss_pred             ccEEEEEEccCCcc--ccc----CceEEEEeCCCCCEEEEEeCC
Q 019672          158 KGSVLVYNVMELHS--HCE----APLAAIVLSSNGMYIATASEQ  195 (337)
Q Consensus       158 dg~v~i~d~~~~~~--~~~----~~i~~~~~s~dg~~lat~s~d  195 (337)
                      .+.|.+|++.....  ...    +.|..++++..|.+|+|-=++
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence            46799999983332  222    889999999999999997544

>PHA03098 kelch-like protein; Provisional

Probab=86.38  E-value=33  Score=33.21  Aligned_cols=94  Identities=12%  Similarity=0.035  Sum_probs=45.6

Q ss_pred             CceEEEEECCCCCEEEEEEcC--CceeEEEEcCCeEEEEEC--------CeEEEEECCCCeeeeeecCCCCC-ceEEEEe
Q 019672           74 PRRLCLFNTTTGTALRELNFL--TSILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNL-KGLCAFS  142 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~  142 (337)
                      -+.+..||..+++....-..+  ..-.++....+.+++.+.        +.+..||+.+.+-.. +...+.+ .+..+..
T Consensus       357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~  435 (534)
T PHA03098        357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIY  435 (534)
T ss_pred             cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEE
Confidence            356888998887654322211  111222333555655441        368889987653221 1111111 1222222


Q ss_pred             eCCCccEEEEcCCCCc------cEEEEEEccCCc
Q 019672          143 PSLNACFLAVPASTTK------GSVLVYNVMELH  170 (337)
Q Consensus       143 ~~~~~~~la~~~~~~d------g~v~i~d~~~~~  170 (337)
                      .  ++...+.+|....      ..+.+||..+.+
T Consensus       436 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        436 H--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             E--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            2  3446666663211      237888887654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.07  E-value=12  Score=34.90  Aligned_cols=40  Identities=13%  Similarity=0.043  Sum_probs=29.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA   45 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~   45 (337)
                      .+-.+.++..+|++++.|+..+-| +.++|+.++..++...
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            344688999999998777653323 7899999987765543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.00  E-value=4.5  Score=39.41  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=24.3

Q ss_pred             EEEEEeec----CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          222 IFSLSFGQ----SMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       222 i~~l~fs~----dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ..+++.++    +..   +|++-+.|+++||||+.+...
T Consensus       217 ~~~~~~~~~~~~~~~---~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  217 AASLAVSSSEINDDT---FLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEEEEE-----ETTT---EEEEEETTSEEEEEETTTTCE
T ss_pred             cceEEEecceeCCCC---EEEEEeCCCeEEEEECCCCeE
Confidence            45555655    555   999999999999999988765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.99  E-value=28  Score=32.05  Aligned_cols=135  Identities=14%  Similarity=0.105  Sum_probs=63.1

Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce--eEEEEEeecCCCcccEEEEEeCC----CcEEEEecCCCccc
Q 019672          184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAINQ  257 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~--~i~~l~fs~dg~~~~~las~s~d----g~v~iw~l~~~~~~  257 (337)
                      |...+|+....++- +.+||++ |+.++.+..+.-..  ..+.+.+  +|+- --||++++.    .+|+||.++.....
T Consensus        66 p~kSlIigTdK~~G-L~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l--~g~~-vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   66 PAKSLIIGTDKKGG-LYVYDLD-GKELQSLPVGRPNNVDVRYGFPL--NGKT-VDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             GGG-EEEEEETTTE-EEEEETT-S-EEEEE-SS-EEEEEEEEEEEE--TTEE-EEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCC-EEEEcCC-CcEEEeecCCCcceeeeecceec--CCce-EEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            45567777777776 5799986 66666664332111  1233333  4541 015556543    57999998642110


Q ss_pred             -CCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeeec
Q 019672          258 -RRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL  333 (337)
Q Consensus       258 -~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (337)
                       .......    ..++....+....+-      .-......-+.++...+|.+..|.|..+..+.-.-.+.++|++-
T Consensus       141 L~~v~~~~----~p~~~~~~e~yGlcl------y~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~  207 (381)
T PF02333_consen  141 LTDVTDPA----APIATDLSEPYGLCL------YRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG  207 (381)
T ss_dssp             EEE-CBTT----C-EE-SSSSEEEEEE------EE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred             ceEcCCCC----cccccccccceeeEE------eecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence             0000000    001111111111110      00000112477888899999999998665443456788888763

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=85.81  E-value=4.6  Score=40.73  Aligned_cols=153  Identities=13%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             cCCceeEEEEcC----CeEEEEECCeEEEEECC--CCeeeeee-----cCCCCCceEEEEeeC-CCccEEEEcCCCCccE
Q 019672           93 FLTSILAVRLNK----KRLVIVLREKTYIYDAN--TLAILDTI-----DTVPNLKGLCAFSPS-LNACFLAVPASTTKGS  160 (337)
Q Consensus        93 ~~~~v~~i~~~~----~~~~v~~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~la~~~~~~dg~  160 (337)
                      +++.|..+.|-.    +..  -.-+...|||+.  .|+.+..+     ....++...+.+++- +...++++..  .+++
T Consensus       131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~--~~~~  206 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL--KGGE  206 (1283)
T ss_pred             CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc--CCCc
Confidence            455566665522    111  113578889874  23332222     222222334444432 2334566555  4788


Q ss_pred             EEEEEccCCc--cc--cc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CC----ceeEeeccCCcce
Q 019672          161 VLVYNVMELH--SH--CE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVS-EA----TKSYSFRRGTYPS  220 (337)
Q Consensus       161 v~i~d~~~~~--~~--~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~----~~~~~~~~~~~~~  220 (337)
                      |++....+..  ..  |.           +.+.--.+||||+.+|+++.||. ++.|.+. +|    .++.+.+.+ +..
T Consensus       207 i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkph-d~~  284 (1283)
T KOG1916|consen  207 IRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPH-DKH  284 (1283)
T ss_pred             eeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCC-CCC
Confidence            8876554321  11  21           22233348999999999999997 5777753 23    334444332 222


Q ss_pred             e-EEEEEeecCC------CcccEEEEEeCCCc-EEEEecC
Q 019672          221 T-IFSLSFGQSM------QFQDILVATSSSGS-LHVFSPG  252 (337)
Q Consensus       221 ~-i~~l~fs~dg------~~~~~las~s~dg~-v~iw~l~  252 (337)
                      + |..+ |...-      .+.-+++++++-|+ +++|.-.
T Consensus       285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             Cceeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence            2 3333 33221      11114666666655 8888743

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.70  E-value=48  Score=34.45  Aligned_cols=165  Identities=15%  Similarity=0.179  Sum_probs=97.8

Q ss_pred             eEEEEECCCCCEEEEEEcCC-----ceeEEEEcC--Ce-EEEE-E------------CCeEEEEEC-CCCe---eeeeec
Q 019672           76 RLCLFNTTTGTALRELNFLT-----SILAVRLNK--KR-LVIV-L------------REKTYIYDA-NTLA---ILDTID  130 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~~-----~v~~i~~~~--~~-~~v~-~------------d~~i~i~d~-~~~~---~~~~~~  130 (337)
                      .|++.|..+++.++.+....     .+.+..|+.  +. ++.+ .            ++.++.|++ ++++   .++...
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            59999999999888776654     345555532  22 2211 1            344777776 3344   333332


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcE-EEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTI-IRVF  202 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~-i~vw  202 (337)
                      .   +..+.|+++..+ ..++..|    ..+++||+-..+.+.+       ..|+.+.+  .+.+++.|...-.+ ...|
T Consensus       934 ~---~~~v~Ai~~f~~-~~LagvG----~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen  934 I---PGPVGAICPFQG-RVLAGVG----RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred             C---CccceEEeccCC-EEEEecc----cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEE
Confidence            2   234567777644 4455443    5799999976655432       55677776  45577777654443 2346


Q ss_pred             EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +-...+ +..+.....+..|+++.+-..+    .+|.+..=|.+++-.+....
T Consensus      1004 ~~~~n~-l~~fadD~~pR~Vt~~~~lD~~----tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1004 RREDNQ-LIVFADDPVPRHVTALELLDYD----TVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             ecCCCe-EEEEeCCCccceeeEEEEecCC----ceeeccccCcEEEEECCCcc
Confidence            554444 4445433333347777766555    58888888999888876543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.66  E-value=26  Score=31.28  Aligned_cols=138  Identities=13%  Similarity=0.183  Sum_probs=65.2

Q ss_pred             eeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCC----CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--
Q 019672           97 ILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV----PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--  170 (337)
Q Consensus        97 v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~--  170 (337)
                      ..+|.+..+...++.+..+.+.....++.-..+...    ..+..+.++   +++..+++..   .|.  ||....+-  
T Consensus        64 l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l---~~~~~~l~~~---~G~--iy~T~DgG~t  135 (302)
T PF14870_consen   64 LNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL---GDGSAELAGD---RGA--IYRTTDGGKT  135 (302)
T ss_dssp             EEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEE---ETTEEEEEET---T----EEEESSTTSS
T ss_pred             EEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc---CCCcEEEEcC---CCc--EEEeCCCCCC
Confidence            566777777666666555555555555433333211    122223332   2222333322   343  33322221  


Q ss_pred             --ccc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          171 --SHC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       171 --~~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                        .+.   .+.+..+..++||+++|++ ..|.++.-||-  |+. -....+. ....|.+|.|+||+.   +.. ....|
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs-~~G~~~~s~~~--G~~~w~~~~r~-~~~riq~~gf~~~~~---lw~-~~~Gg  207 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVS-SRGNFYSSWDP--GQTTWQPHNRN-SSRRIQSMGFSPDGN---LWM-LARGG  207 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEE-TTSSEEEEE-T--T-SS-EEEE---SSS-EEEEEE-TTS----EEE-EETTT
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEE-CcccEEEEecC--CCccceEEccC-ccceehhceecCCCC---EEE-EeCCc
Confidence              111   1778999999999988776 56776666664  332 1222222 234699999999987   444 44778


Q ss_pred             cEEEEe
Q 019672          245 SLHVFS  250 (337)
Q Consensus       245 ~v~iw~  250 (337)
                      .|++=+
T Consensus       208 ~~~~s~  213 (302)
T PF14870_consen  208 QIQFSD  213 (302)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            887776

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.61  E-value=28  Score=33.19  Aligned_cols=125  Identities=14%  Similarity=0.264  Sum_probs=74.4

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCC---------eEEEEE-CCeEEEEECCCC-eeeeeecCCCCCce----
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIVL-REKTYIYDANTL-AILDTIDTVPNLKG----  137 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~----  137 (337)
                      ..+.+.=-|++.|+.+.+...+..| -+.++|.         +-+++. +..|.--|.+-. ..+...+. ....+    
T Consensus       488 ~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~F  565 (776)
T COG5167         488 ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKF  565 (776)
T ss_pred             CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhccccccc
Confidence            4677888899999999998887776 4555543         233333 666666665422 11111110 00001    


Q ss_pred             EEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---c--ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---H--CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---~--~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~  205 (337)
                      .++..  ..+.++|.++  ..|.|++||--..+.   +  ....|..+..+.+|+++.+.+.. . +-+-|++
T Consensus       566 ss~~t--TesGyIa~as--~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-llL~d~~  632 (776)
T COG5167         566 SSGMT--TESGYIAAAS--RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-LLLTDVP  632 (776)
T ss_pred             ccccc--ccCceEEEec--CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-EEEEecc
Confidence            11111  2234888887  489999999543221   1  12779999999999998877765 3 4466653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.68  E-value=19  Score=37.98  Aligned_cols=128  Identities=16%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             CCceEEEEECCCCCEEEEEEc-CCceeEEEEc---C--------CeEEEEECCeEEEEECCCCee-------eeeecCCC
Q 019672           73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLN---K--------KRLVIVLREKTYIYDANTLAI-------LDTIDTVP  133 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~---~--------~~~~v~~d~~i~i~d~~~~~~-------~~~~~~~~  133 (337)
                      -|+.+.+|+.+++.....+.. .+.|..+.+-   |        ..+++++--.|.++-+...+.       ...+..+.
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            389999999999766666543 4466666542   2        235556666777765532111       11122223


Q ss_pred             CCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc----CC---c-c-------------------cc---cCceEEEEeC
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----EL---H-S-------------------HC---EAPLAAIVLS  183 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~----~~---~-~-------------------~~---~~~i~~~~~s  183 (337)
                      ++..+.++....+|. ++.+|  .||  .+|.+.    .+   + +                   ..   ..+|..++++
T Consensus       177 dg~~V~~I~~t~nGR-IF~~G--~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGR-IFFAG--RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             CCceEEEEEeccCCc-EEEee--cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            445666766444554 45555  366  444431    11   0 0                   01   2689999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCC
Q 019672          184 SNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      ..-+.+.+=++.|+ |++||+..
T Consensus       252 ~SR~IlY~lsek~~-v~~Y~i~~  273 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGT-VSAYDIGG  273 (1311)
T ss_pred             cccceeeeeccCce-EEEEEccC
Confidence            98889999999997 69999975

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.32  E-value=34  Score=31.54  Aligned_cols=175  Identities=17%  Similarity=0.185  Sum_probs=91.9

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEE------EEcCCe--EEEEE--C---CeEEEEECC--CCeeeeeecCC-----
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAV------RLNKKR--LVIVL--R---EKTYIYDAN--TLAILDTIDTV-----  132 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i------~~~~~~--~~v~~--d---~~i~i~d~~--~~~~~~~~~~~-----  132 (337)
                      ..+-+.+||+. |+.+..+.. .....+      .+....  +++++  +   ++|++|.+.  ++. +..+...     
T Consensus        76 K~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~  152 (381)
T PF02333_consen   76 KKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIA  152 (381)
T ss_dssp             TTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE
T ss_pred             CCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccc
Confidence            46789999996 556666643 233333      333333  34555  2   479999774  333 3333211     


Q ss_pred             ---CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC---Cc----cccc----CceEEEEeCCCCCEEEEEeCCCcE
Q 019672          133 ---PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LH----SHCE----APLAAIVLSSNGMYIATASEQGTI  198 (337)
Q Consensus       133 ---~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~---~~----~~~~----~~i~~~~~s~dg~~lat~s~dg~~  198 (337)
                         ..+.++|......++.+.++.+. .+|.+..|.+..   +.    .+.+    ..+..|+.+....+|..|-++-- 
T Consensus       153 ~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G-  230 (381)
T PF02333_consen  153 TDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDVG-  230 (381)
T ss_dssp             -SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTTE-
T ss_pred             cccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCccE-
Confidence               11234444433334555555443 479998888753   21    1222    77889999988888888888754 


Q ss_pred             EEEEEcCC-----CceeEeeccCCcceeEEEEEee--cCCCcccEEEEEeC-CCcEEEEecCCC
Q 019672          199 IRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSS-SGSLHVFSPGFA  254 (337)
Q Consensus       199 i~vwd~~~-----~~~~~~~~~~~~~~~i~~l~fs--~dg~~~~~las~s~-dg~v~iw~l~~~  254 (337)
                      |.-|+.+.     ++.+......+..+.|-.|+.-  ++++  .||+++|. +++..||+.+..
T Consensus       231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~--gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGK--GYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC---EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCC--eEEEEEcCCCCeEEEEecCCC
Confidence            55566641     2233222222223456666664  4444  25555554 568999997643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats

Probab=83.85  E-value=44  Score=32.42  Aligned_cols=57  Identities=18%  Similarity=0.102  Sum_probs=42.4

Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  259 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~  259 (337)
                      +.|.| .+.+.+.++..-.....|+++.|--|--   |++|=-.---+.+.||..+++|+-
T Consensus       306 lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~---Y~VTFrqvDPLfviDLsdP~~P~v  362 (521)
T PF09826_consen  306 LYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRA---YLVTFRQVDPLFVIDLSDPANPKV  362 (521)
T ss_pred             EEEEC-CCCcEeEEccccCCCceEEEEEEeCCeE---EEEEEeecCceEEEECCCCCCCce
Confidence            45666 5666666664333345699999998876   888887777899999999888763

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.44  E-value=57  Score=33.39  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=68.0

Q ss_pred             CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc----------cCc----------eEEEEeCCCCCEEEEEe
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC----------EAP----------LAAIVLSSNGMYIATAS  193 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----------~~~----------i~~~~~s~dg~~lat~s  193 (337)
                      .+..-++|.|... ..+|...  ..|...|||+.......          .+.          -..+.|.++-+.|+..+
T Consensus       146 ~~~aDv~FnP~~~-~q~AiVD--~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~  222 (765)
T PF10214_consen  146 FPHADVAFNPWDQ-RQFAIVD--EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN  222 (765)
T ss_pred             CccceEEeccCcc-ceEEEEe--ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence            3333455555333 3778877  58999999992211110          022          23778888877888777


Q ss_pred             CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          194 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       194 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ...  +.++|+++......+........|..+.-+|+...+ .++.++  ..|-..++....
T Consensus       223 r~~--l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~-~FiLTs--~eiiw~~~~~~~  279 (765)
T PF10214_consen  223 RSK--LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSH-VFILTS--KEIIWLDVKSSS  279 (765)
T ss_pred             CCc--eEEEECCCCCccchhccCCChhheeeEEecCCccce-EEEEec--CeEEEEEccCCC
Confidence            653  468999887653323222234569999988883210 333333  458777877643

These proteins are found in fungi.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=82.72  E-value=42  Score=31.41  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .|.+|+..+..+   .|.+.+.+|.|++|++..
T Consensus       191 ~I~~v~~d~~r~---~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRR---LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTT---EEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcC---EEEEEeCCCcEEEEEEeC
Confidence            388999988888   999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.37  E-value=67  Score=33.49  Aligned_cols=124  Identities=16%  Similarity=0.224  Sum_probs=68.7

Q ss_pred             eEEEeCCCCcEEEEEee----CCEEEEEEccCC--CE-EEEEeCCCCC-----CCCCceEEEEECC-CCC---EEEEEEc
Q 019672           30 FKIFDSSTGRLCYERAV----GAFSIVEMLYSS--SL-LAIVGAGEQP-----SLSPRRLCLFNTT-TGT---ALRELNF   93 (337)
Q Consensus        30 ~~vw~~~~~~~~~~~~~----~~~~~~~~~~~~--~~-~~~~~~g~~~-----~~~d~~v~iwd~~-~~~---~~~~~~~   93 (337)
                      ++++|..+++.+...+.    ....+..+.|++  .. +..++.....     .-.++.+..|++- .|+   .+...+.
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            57888887766544332    122333333333  22 2222222110     1235567777753 344   2333445


Q ss_pred             CCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           94 LTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        94 ~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +.+|.+|.-..++++++..+.+++||+...++++..+...-+..+..+...  ...++++..
T Consensus       935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~  994 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDI  994 (1205)
T ss_pred             CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeec
Confidence            567888877777777777999999999988777665443333445555443  335666654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.05  E-value=17  Score=30.93  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             EEEEEcCCCCEEEEEcCCc--eEEEe--CCCCc-----EEEEEeeC-CEE-----EEEEccCCCEEEEEeCCCCCCCCCc
Q 019672           11 FFVSFNQDNSGFALSTKDG--FKIFD--SSTGR-----LCYERAVG-AFS-----IVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g--~~vw~--~~~~~-----~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      +.++|+.|.+.+..-..-.  +.-||  +.+|.     .++..... +..     -.++.-++++.+.+       +.-+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-------~ng~  233 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-------FNGG  233 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-------ecCc
Confidence            3567888887766543333  44465  66663     34443220 000     01122233333222       2346


Q ss_pred             eEEEEECCCCCEEEEEEcCC-ceeEEEEcCC
Q 019672           76 RLCLFNTTTGTALRELNFLT-SILAVRLNKK  105 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~  105 (337)
                      +|.-.|+.+|+.+.++..+. .|++.+|-..
T Consensus       234 ~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  234 TVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            89999999999999999886 6888888543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=81.96  E-value=1.6  Score=43.86  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             ccEEEEEEcc--CCccccc----------CceEEEEeC---CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-
Q 019672          158 KGSVLVYNVM--ELHSHCE----------APLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-  221 (337)
Q Consensus       158 dg~v~i~d~~--~~~~~~~----------~~i~~~~~s---~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-  221 (337)
                      -|...|||+.  .++....          .++.-|.|-   ++..++..+-.+|+ |++.++.+-..  .+-++|.... 
T Consensus       152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~~--~l~rsHs~~~~  228 (1283)
T KOG1916|consen  152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE-IRLLNINRALR--SLFRSHSQRVT  228 (1283)
T ss_pred             hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc-eeEeeechHHH--HHHHhcCCCcc
Confidence            5778999875  3332221          344444444   45556666666666 68766654322  2222221111 


Q ss_pred             ---------EEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          222 ---------IFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       222 ---------i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                               +.--..||||+   .+|.++.||.+++|.+-
T Consensus       229 d~a~~~~g~~~l~~lSpDGt---v~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  229 DMAFFAEGVLKLASLSPDGT---VFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             cHHHHhhchhhheeeCCCCc---EEEEeecCCccceeeee
Confidence                     11123789999   99999999999999863

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=81.87  E-value=33  Score=29.63  Aligned_cols=146  Identities=15%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC--CcEEEEecCC
Q 019672          176 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS--GSLHVFSPGF  253 (337)
Q Consensus       176 ~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d--g~v~iw~l~~  253 (337)
                      .|.--+-+|+-..+++.-..+. ++|||+. |+.++.+..+.....=..-.|--.|+. =-|+++|+.  .+|.+|.++.
T Consensus        57 AIwVh~t~P~kS~vItt~Kk~G-l~VYDLs-GkqLqs~~~Gk~NNVDLrygF~LgG~~-idiaaASdR~~~~i~~y~Idp  133 (364)
T COG4247          57 AIWVHATNPDKSLVITTVKKAG-LRVYDLS-GKQLQSVNPGKYNNVDLRYGFQLGGQS-IDIAAASDRQNDKIVFYKIDP  133 (364)
T ss_pred             ceEeccCCcCcceEEEeeccCC-eEEEecC-CCeeeecCCCcccccccccCcccCCeE-EEEEecccccCCeEEEEEeCC
Confidence            3444455788788887777766 4899985 666666654421111011123333431 124455443  4688888864


Q ss_pred             CcccC-CCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEEeeeeee
Q 019672          254 AINQR-RGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL  332 (337)
Q Consensus       254 ~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~  332 (337)
                      ....- ....+..    ......++....+-.     .-+.. ..-++++-..+|.+.-|.+-.+..+.-.-++.++|+|
T Consensus       134 ~~~~L~sitD~n~----p~ss~~s~~YGl~ly-----rs~kt-gd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~  203 (364)
T COG4247         134 NPQYLESITDSNA----PYSSSSSSAYGLALY-----RSPKT-GDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKI  203 (364)
T ss_pred             CccceeeccCCCC----ccccCcccceeeEEE-----ecCCc-CcEEEEEecCCCceeEEEEEecCCceEcceeeEeeec
Confidence            43110 0000000    000111111111110     00111 1246777788999999999666444456778889988


Q ss_pred             cc
Q 019672          333 LT  334 (337)
Q Consensus       333 ~~  334 (337)
                      .+
T Consensus       204 ~t  205 (364)
T COG4247         204 PT  205 (364)
T ss_pred             CC
Confidence            65

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.66  E-value=14  Score=29.77  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             cCEEEEEEeCCcEEEEEEecCCCCeeceEEe
Q 019672          297 RASVSVITYNGYFVEYIFSINNCCESTWTLD  327 (337)
Q Consensus       297 ~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~  327 (337)
                      ...|++.+.+|.+.+|.-....  .+.|...
T Consensus       103 rClLavLTs~~~l~l~~~~~~~--~~~W~~v  131 (173)
T PF12657_consen  103 RCLLAVLTSNGRLSLYGPPGNP--QGEWNRV  131 (173)
T ss_pred             ceEEEEEcCCCeEEEEecCCCc--cccEeee
Confidence            4678899999999999765442  2346654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=81.62  E-value=11  Score=30.50  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=25.4

Q ss_pred             eEEEEEeecCCCcc---cEEEEEeCCCcEEEEecCC
Q 019672          221 TIFSLSFGQSMQFQ---DILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       221 ~i~~l~fs~dg~~~---~~las~s~dg~v~iw~l~~  253 (337)
                      .|.+++|||-|-.+   -+||+-..++.|.||.-..
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            58899999954211   2799999999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.17  E-value=34  Score=29.25  Aligned_cols=85  Identities=13%  Similarity=0.065  Sum_probs=56.8

Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEE--ccCCccccc--------------CceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYN--VMELHSHCE--------------APLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d--~~~~~~~~~--------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      +++++.+...+.+..+ .+-+|.-||  ..++.....              -.--.++++-+|++.++.-+-|++ .-.|
T Consensus       162 gl~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V-~~~d  239 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV-QKVD  239 (310)
T ss_pred             cccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE-EEEC
Confidence            4455556666666655 466776676  555443221              112345557788888877777774 6789


Q ss_pred             cCCCceeEeeccCCcceeEEEEEee
Q 019672          204 VSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      ..+|+.+.++...  ...|+|++|-
T Consensus       240 p~tGK~L~eiklP--t~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLP--TPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcC--CCceEEEEec
Confidence            9999999998754  3469999997

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=81.03  E-value=51  Score=31.50  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             eEEEEECCCCeeeeeecCCCCCceEEEEeeCC------CccEEEEcCCCCccEEEEEEccCCc--cc--------ccCce
Q 019672          114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSL------NACFLAVPASTTKGSVLVYNVMELH--SH--------CEAPL  177 (337)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~la~~~~~~dg~v~i~d~~~~~--~~--------~~~~i  177 (337)
                      +++-.|+..|+.+.+...+...  ++.+.|.-      +.+.|+--   .+..|.-.|.+-..  ..        .+...
T Consensus       491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl---S~~svFrIDPR~~gNKi~v~esKdY~tKn~F  565 (776)
T COG5167         491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL---SDYSVFRIDPRARGNKIKVVESKDYKTKNKF  565 (776)
T ss_pred             cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee---cccceEEecccccCCceeeeeehhccccccc
Confidence            5666778888887777665442  33333321      12223222   24556666654321  11        01333


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          178 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +|..-..+| ++|.||..|- ||+||--. ..-++.-.+. ...|..+..+.+|+   ++++.+ ..++-+-|++-
T Consensus       566 ss~~tTesG-yIa~as~kGD-irLyDRig-~rAKtalP~l-G~aIk~idvta~Gk---~ilaTC-k~yllL~d~~i  633 (776)
T COG5167         566 SSGMTTESG-YIAAASRKGD-IRLYDRIG-KRAKTALPGL-GDAIKHIDVTANGK---HILATC-KNYLLLTDVPI  633 (776)
T ss_pred             cccccccCc-eEEEecCCCc-eeeehhhc-chhhhcCccc-ccceeeeEeecCCc---EEEEee-cceEEEEeccc
Confidence            343333344 8999999998 79999532 2222222222 34588889999999   666554 45788888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		4e-07
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-04

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 19/251 (7%)
Query: 7   SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
           S P+    FNQD S   +ST   F I++    +    + +     + ML+ ++ +A V  
Sbjct: 14  SNPIVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTIRMLHRTNYIAFVST 73
Query: 67  GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL 126
            ++       L +++      +  +    ++  + L+++ +V+   +   I+        
Sbjct: 74  KKE------LLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNK 127
Query: 127 DTIDTVPNLKGLCAFSPSL-------NACFLAVPASTTKGSVLVYNVMELHSHCEAPLAA 179
            T D      G+C F+  L       N   + V    T    +V   + + +H   P+  
Sbjct: 128 ITEDI--KFGGVCEFANGLLVYSNEFNLGQIHVTRLQTDAEQVVGKGVLVKAHAN-PVKM 184
Query: 180 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA 239
           + L+  G  +AT S+ GT+IRVF          FRRG   ++I  + +         L  
Sbjct: 185 VRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGS---KLAV 241
Query: 240 TSSSGSLHVFS 250
            S   +LHVF 
Sbjct: 242 VSDKWTLHVFE 252

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 38/266 (14%)
Query: 7   SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
           S PV    FNQD S   LST   F+I++         + +   S V ML+ ++ +A V  
Sbjct: 19  SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG 78
Query: 67  GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYD-ANTLA- 124
            ++       + +++      +  +     +  + L+++ +V+   +   ++   N    
Sbjct: 79  VKEV------VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKR 132
Query: 125 ILDTIDTVPNLKGLCAFSPSL-------NACFLAVPASTTKGSVLVYN------------ 165
           I D I       G+C FS  L       N   + +    + GS    +            
Sbjct: 133 ITDDI----RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG 188
Query: 166 -VMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224
            +++ H++   P+  + L+     +AT S+ GTIIRVF   +      FRRG   + +  
Sbjct: 189 VLIKAHTN---PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245
Query: 225 LSFGQSMQFQDILVATSSSGSLHVFS 250
           + +         L   S   +LHVF 
Sbjct: 246 MKWSTD---GSKLAVVSDKWTLHVFE 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	8e-07

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score =  199 bits (507), Expect = 1e-61
 Identities = 62/355 (17%), Positives = 121/355 (34%), Gaps = 36/355 (10%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           +     S PV    FNQD S   LST   F+I++         + +   S V ML+ ++ 
Sbjct: 13  VPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNY 72

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           +A V            + +++      +  +     +  + L+++ +V+   +   ++  
Sbjct: 73  VAFVTGV------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKF 126

Query: 121 NTLAILDTIDTVPN-----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--------- 166
                  T D           GL  +S   N   + +    + GS    +          
Sbjct: 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186

Query: 167 --MELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 224
             + + +H   P+  + L+     +AT S+ GTIIRVF   +      FRRG   + +  
Sbjct: 187 KGVLIKAH-TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245

Query: 225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH 284
           + +         L   S   +LHVF     I   +  +  ++ G I  +         + 
Sbjct: 246 MKWSTDGSK---LAVVSDKWTLHVFE----IFNDQDNKRHALKGWINMKYFQSEWSLCNF 298

Query: 285 HVLRNAFPAGVKRASVS------VITYNGYFVEYIFSINNCCESTWTLDREFNLL 333
            +  +    G K A +S      V  +      +    ++  E       +   L
Sbjct: 299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQMDQREQL 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 1e-10
 Identities = 72/423 (17%), Positives = 127/423 (30%), Gaps = 127/423 (30%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALS--------TKDGFKIFDSSTGRLC--------Y-- 42
           +S Q      F     + N  F +S             +++     RL         Y  
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 43  ERAVGAFSIVEMLY---SSSLLAI---VGAGEQPSL------SPRRLCLFN--------- 81
            R      + + L     +  + I   +G+G+   +      S +  C  +         
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 82  --TTTGTALRELNFLTSIL------------AVRLN----KKRLVIVLREKTYIYDANTL 123
              +  T L  L  L   +             ++L     +  L  +L+ K Y    N L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCL 247

Query: 124 AILDTIDTVPNLKGLCAFSPSLNAC-----------FLAVPASTTKGSVLVYN------- 165
            +L   + V N K   AF+ S   C              + A+TT    L ++       
Sbjct: 248 LVLL--N-VQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 166 -VMELHSHC----------EA----PLA-AIVLSSNGMYIAT--------ASEQGTIIRV 201
            V  L              E     P   +I+  S    +AT          +  TII  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 202 FL----VSEATKSYS----FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 252
            L     +E  K +     F    + P+ + SL +   ++   ++V       LH +S  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYS-- 415

Query: 253 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF--PAGVKRASVSVITYNGYFV 310
             + ++    T SI    L   V    + A H  + + +  P       +     + YF 
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 311 EYI 313
            +I
Sbjct: 475 SHI 477

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 27/210 (12%), Positives = 68/210 (32%), Gaps = 28/210 (13%)

Query: 55  LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-----NKKRLVI 109
           +Y    + +         +     L ++ T T +   N  T      +       + L++
Sbjct: 44  MYYDKWVCMCRC---EDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLL 100

Query: 110 VLREKTYIYDANTLAILDTIDTVPNLKGLC-AFSPSLNACFLAVPASTTKGSVLVYNV-- 166
               +  I D+ T  +L  I+     + +       +N  +     +  +G++   +   
Sbjct: 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFI--WADNRGTIGFQSYED 158

Query: 167 ----MELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI 222
               +   +  +   ++ VL  + + +A  S  G  + V+ +S   ++ S       + I
Sbjct: 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRFPVDEEAKI 217

Query: 223 FSLSF---GQSMQFQDILVATSSSGSLHVF 249
             + F   G  M             ++  F
Sbjct: 218 KEVKFADNGYWM-------VVECDQTVVCF 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.81
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.81
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.75
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.74
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.59
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.57
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.55
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.54
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.49
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.42
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.42
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.41
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.4
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.34
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.34
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.3
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.28
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.26
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.25
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.22
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.22
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.12
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.11
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.11
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.1
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.1
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.09
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.08
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.02
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.01
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.96
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.9
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.85
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.76
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.73
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.59
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.59
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.59
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.51
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.46
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.45
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.42
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.38
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.25
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.23
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.21
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.1
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.01
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.9
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.78
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.62
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.53
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.5
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.48
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.46
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.41
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.31
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.3
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.2
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.13
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.91
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.86
3ott_A	758	Two-component system sensor histidine kinase; beta	96.85
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.82
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.52
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.47
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.47
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.43
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.43
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.42
3ott_A	758	Two-component system sensor histidine kinase; beta	96.38
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.33
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.18
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.79
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.71
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.62
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.24
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.0
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.82
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.6
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.45
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.18
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.92
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.79
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.28
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	93.1
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.37
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.24
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.14
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.91
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	90.36
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	88.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	86.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.39
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	85.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	84.96
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	84.43
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.58
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.33
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	82.07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	82.01
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	81.88

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.1e-42  Score=311.78  Aligned_cols=296  Identities=18%  Similarity=0.239  Sum_probs=239.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      .++..+|++++|+|||++||+|++++++|||+++++.......+++..+.+.++++.+++++++      |++|++||.+
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~v~iWd~~   89 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGV------KEVVHIWDDV   89 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSS------TTEEEEEETT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECC------ccEEEEEECC
Confidence            4678999999999999999999999999999999888777766678888999999999888874      8899999999


Q ss_pred             CCCEEEEEEcCCceeEEEEcCCeEEEEECCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEc-CCCCccEE
Q 019672           84 TGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVP-ASTTKGSV  161 (337)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~dg~v  161 (337)
                      +++++.++.++.+|.++.++++.++++.++.|++||+.++ +.+..+..   +.+++++++    .+++++ |. .+|.|
T Consensus        90 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~-~~g~v  161 (355)
T 3vu4_A           90 KKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEF-NLGQI  161 (355)
T ss_dssp             TTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESS-CTTCE
T ss_pred             CCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCC-cCcEE
Confidence            9999999999999999999999999999999999999988 77766654   556777776    477775 44 69999


Q ss_pred             EEEEccCCc-----------------c----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          162 LVYNVMELH-----------------S----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       162 ~i~d~~~~~-----------------~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ++||+.++.                 .    .|..+|++++|+|+|++||+|+.||++|+|||+++++.+.++..+.|..
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence            999998754                 1    2458999999999999999999999745999999999999997554577


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceee------eeccCCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL------RNAFPAG  294 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~------~~~~~~~  294 (337)
                      .|++++|+|||+   +|++++.|++|+|||++.....+.    ..+...++|..+...|+.......      ...++++
T Consensus       242 ~v~~~~~s~~~~---~l~s~s~d~~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          242 DVVDMKWSTDGS---KLAVVSDKWTLHVFEIFNDQDNKR----HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             CEEEEEECTTSC---EEEEEETTCEEEEEESSCCSCCCS----EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             cEEEEEECCCCC---EEEEEECCCEEEEEEccCCCCccc----ccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            899999999999   999999999999999986543221    111111455555566665432221      1334567


Q ss_pred             cccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          295 VKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       295 ~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      +++++|++++.||.+++|.+...+..
T Consensus       315 ~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             CCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence            78899999999999999999876544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-36  Score=273.72  Aligned_cols=274  Identities=17%  Similarity=0.186  Sum_probs=213.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+||+++|++|+.|+ ++|||+.+++.+.....  ..+..+.+.++.+.++..+       .|+.|++|
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~d~~v~iw  124 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-------LDNICSIY  124 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTCEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-------CCCeEEEE
Confidence            46889999999999999999999887 59999999987766544  4456666777777766554       48999999


Q ss_pred             ECCCCC----EEEEEE-cCCceeEEEEcCCeEEE-EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           81 NTTTGT----ALRELN-FLTSILAVRLNKKRLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        81 d~~~~~----~~~~~~-~~~~v~~i~~~~~~~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      |+.+++    ....+. +...|.++.++++..++ +. |+.|++||+++++.+..+..+.  ..+.+++++|++.+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC--CceEEEEECCCCCEEEEE
Confidence            998764    333443 44578999887655444 44 8999999999999888887554  357788888888899988


Q ss_pred             CCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          154 ASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      +  .||.|++||++++...     |..+|++++|+|+|++||+|+.||+ |++||+++++.+..+........|.+++|+
T Consensus       203 ~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          203 A--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             E--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             e--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            8  5999999999887654     4488999999999999999999998 699999999888777543334569999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  308 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  308 (337)
                      |+|+   +|++|+.||+|+|||+.+.....           .+..          +...+..+.+.+++..|++++.||.
T Consensus       280 ~~g~---~l~~g~~d~~i~vwd~~~~~~~~-----------~~~~----------h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          280 KSGR---LLLAGYDDFNCNVWDALKADRAG-----------VLAG----------HDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTSS---EEEEEETTSEEEEEETTTCCEEE-----------EEEC----------CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCC---EEEEECCCCeEEEEEcccCcEee-----------Eeec----------CCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            9999   99999999999999987654311           1111          1111223344566789999999999


Q ss_pred             EEEEE
Q 019672          309 FVEYI  313 (337)
Q Consensus       309 ~~~~~  313 (337)
                      +++|+
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99994

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=270.69  Aligned_cols=274  Identities=14%  Similarity=0.186  Sum_probs=211.3

Q ss_pred             CCCCCCCeEEEEEcCC----CCEEEEEcCCc-eEEEeCCCCcEE--EEEee--CCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQD----NSGFALSTKDG-FKIFDSSTGRLC--YERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~d----g~~la~g~~~g-~~vw~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      .++|.++|++++|+|+    +++|++|+.|+ ++||++.+++..  .....  ..+..+.+.++...++..+       .
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s-------~  100 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSS-------L  100 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEE-------T
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEe-------C
Confidence            3578999999999975    56899998877 699998877543  23333  3455556665556655544       4


Q ss_pred             CceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           74 PRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      |++|++||+++++++..+..+ ..+.+++|+++...+  +. ++.|++||+++++....+..+.  ..+.+++++|++.+
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCE
Confidence            999999999999998888654 478889998865333  33 8899999999998877776543  35777888889999


Q ss_pred             EEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++++  .||.|++||+.+++..     |..+|++++|+|+|++||+|+.||+ |+|||+++++.+.++..  +...|.+
T Consensus       179 lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~  253 (321)
T 3ow8_A          179 LASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN  253 (321)
T ss_dssp             EEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence            99988  5999999999988764     3478999999999999999999998 69999999998888753  4567999


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      ++|+|+++   +|++++.|++|+|||+.+......          + ......++          .+.+.+++.+|++++
T Consensus       254 ~~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~----------~-~~h~~~v~----------~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          254 VAFCPDDT---HFVSSSSDKSVKVWDVGTRTCVHT----------F-FDHQDQVW----------GVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEECTTSS---EEEEEETTSCEEEEETTTTEEEEE----------E-CCCSSCEE----------EEEECTTSSEEEEEE
T ss_pred             EEECCCCC---EEEEEeCCCcEEEEeCCCCEEEEE----------E-cCCCCcEE----------EEEECCCCCEEEEEe
Confidence            99999999   999999999999999986543221          1 01111122          223355668999999


Q ss_pred             eCCcEEEEEE
Q 019672          305 YNGYFVEYIF  314 (337)
Q Consensus       305 ~dg~~~~~~~  314 (337)
                      .||.+++|+.
T Consensus       310 ~d~~i~vwd~  319 (321)
T 3ow8_A          310 DDQEIHIYDC  319 (321)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCeEEEEeC
Confidence            9999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-37  Score=284.72  Aligned_cols=273  Identities=14%  Similarity=0.127  Sum_probs=216.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|++++|++|+.|+ ++|||+.+++.......  ..+..+.+.++++.++.++       .|++|++|
T Consensus       105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs-------~D~~i~iw  177 (410)
T 1vyh_C          105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS-------ADMTIKLW  177 (410)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCCCEE
T ss_pred             cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe-------CCCeEEEE
Confidence            36788999999999999999999887 69999999987666544  4566666666667665554       49999999


Q ss_pred             ECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+.+++++..+.. ...|.++.|+++.  ++.++ |++|++||+++++.+..+..+.  ..+.++.+++++.++++++  
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~g~~l~s~s--  253 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCS--  253 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSEEEEEE--
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--ccEEEEEECCCCCEEEEEc--
Confidence            9999998887754 4589999998754  44445 8999999999999888887554  3567778888999999988  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCCC--------------------CCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSN--------------------GMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~d--------------------g~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      .||.|++||+.+....     |...|.+++|+|+                    |.+|++|+.||+ |++||+.+++.+.
T Consensus       254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~~  332 (410)
T 1vyh_C          254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLM  332 (410)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceEE
Confidence            5999999999887643     4488999999996                    779999999997 6999999999988


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeecc
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF  291 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  291 (337)
                      .+..  |...|.+++|+|+|+   +|++|+.||+|+|||+........           +...          ...+..+
T Consensus       333 ~~~~--h~~~v~~v~~~~~g~---~l~s~s~D~~i~vwd~~~~~~~~~-----------~~~h----------~~~v~~l  386 (410)
T 1vyh_C          333 TLVG--HDNWVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRCMKT-----------LNAH----------EHFVTSL  386 (410)
T ss_dssp             EEEC--CSSCEEEEEECSSSS---CEEEEETTTEEEEECCTTSCCCEE-----------EECC----------SSCEEEE
T ss_pred             EEEC--CCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCceEEE-----------EcCC----------CCcEEEE
Confidence            8853  356799999999999   999999999999999976543211           1111          1112233


Q ss_pred             CCCcccCEEEEEEeCCcEEEEEE
Q 019672          292 PAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       292 ~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                      .+.++++.|++++.||.+++|++
T Consensus       387 ~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          387 DFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEcCCCCEEEEEeCCCcEEEEeC
Confidence            34566689999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.9e-36  Score=272.14  Aligned_cols=276  Identities=12%  Similarity=0.118  Sum_probs=212.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+||+++|++|+.|+ ++|||..+++.......  ..+..+.+.++++.++..+       .|+++++|
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~-------~d~~i~v~  133 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG-------LDNKCSVY  133 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES-------TTSEEEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee-------CCCCEEEE
Confidence            47889999999999999999999888 59999998887666543  3455566666667665544       49999999


Q ss_pred             ECCCCC------EEEEE-EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           81 NTTTGT------ALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        81 d~~~~~------~~~~~-~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      ++....      ....+ .+...|.++.|+++.  ++.+. |++|++||+++++.+..+..+......+++++++++.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            986542      22333 355689999998764  44455 899999999999999888776655444556666667889


Q ss_pred             EEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          151 AVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      ++++  .||.|++||+++++..     |..+|++++|+|+|++||+|+.||+ ||+||+++++.+..+........+.++
T Consensus       214 ~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          214 VSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccceeEE
Confidence            9888  5999999999987754     4488999999999999999999998 699999998877766543333468999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  305 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~  305 (337)
                      +|+|+|+   +|++|+.|++|+|||+.++....           .+..          +...+..+.+.+++++|++++.
T Consensus       291 ~~s~~g~---~l~~g~~d~~i~vwd~~~~~~~~-----------~l~~----------h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          291 DFSLSGR---LLFAGYNDYTINVWDVLKGSRVS-----------ILFG----------HENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             EECTTSS---EEEEEETTSCEEEEETTTCSEEE-----------EECC----------CSSCEEEEEECTTSSCEEEEET
T ss_pred             EEeCCCC---EEEEEECCCcEEEEECCCCceEE-----------EEEC----------CCCcEEEEEECCCCCEEEEEcC
Confidence            9999999   99999999999999997654321           1111          1111223344667789999999


Q ss_pred             CCcEEEEE
Q 019672          306 NGYFVEYI  313 (337)
Q Consensus       306 dg~~~~~~  313 (337)
                      ||.+++|+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999994

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=272.27  Aligned_cols=274  Identities=10%  Similarity=0.055  Sum_probs=195.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCC------------CcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSST------------GRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSL   72 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   72 (337)
                      +...|.+++|+|||++|+++++..+++||...            +..... ....++..+++..+ +.++ +++      
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~-~~s------  100 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGIL-VAS------  100 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEE-EEE------
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEE-EEE------
Confidence            45679999999999999999977778886311            011111 12244555666554 3443 333      


Q ss_pred             CCceEEEEECCCCCEEEEE-----EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672           73 SPRRLCLFNTTTGTALREL-----NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~-----~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      .|++|+|||+++++.+...     .|...|.+++|++++  ++.+. |++|++||+.+++.+..+..|..  .+.++.++
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~--~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA--QVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC--ceEEEEec
Confidence            4999999999998765433     355689999998764  44444 88999999999999999876654  56666666


Q ss_pred             CCc-cEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          145 LNA-CFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       145 ~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      +++ .++++++  .||+|++||+++++....       ..+.+++|+|+ +++||+|+.||+ |+|||+++++.+.++..
T Consensus       179 ~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            665 4667776  599999999998765432       56899999994 678999999997 69999999999988853


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  295 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  295 (337)
                        |...|++|+|+|++.  .+||+|+.|++|+|||+.+++..+           ..           .|...+..+.+.+
T Consensus       256 --h~~~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~~~-----------~~-----------~H~~~V~~v~~sp  309 (344)
T 4gqb_B          256 --HSQCVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELFR-----------SQ-----------AHRDFVRDATWSP  309 (344)
T ss_dssp             --CSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEEEE-----------EC-----------CCSSCEEEEEECS
T ss_pred             --CCCCEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcEEE-----------Ec-----------CCCCCEEEEEEeC
Confidence              356799999999984  289999999999999987653211           00           0111122333455


Q ss_pred             ccCEE-EEEEeCCcEEEEEEecCC
Q 019672          296 KRASV-SVITYNGYFVEYIFSINN  318 (337)
Q Consensus       296 ~~~~l-~~~~~dg~~~~~~~~~~~  318 (337)
                      ++.++ ++++.||+|++|.++++.
T Consensus       310 ~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          310 LNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCeEEEEEcCCCeEEEEECCCCC
Confidence            55555 578889999999997653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.6e-35  Score=262.14  Aligned_cols=236  Identities=13%  Similarity=0.138  Sum_probs=191.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..|.++|++++|+||+++|++|+.++ +++||+++++.+.....  ..+..+.+.++.+.++..+       .|++|++|
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-------~d~~i~vw   82 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-------DDFRIRVF   82 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-------TTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-------CCCEEEEE
Confidence            46788999999999999999998887 69999999987766554  4566677777778776655       49999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCC-CccEEEEcC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~  154 (337)
                      |+++++++..+..+ ..|.+++++++.  ++.+. |++|++||++++ .....+..+.  ..+.+++++| ++.++++++
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEEEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEEEe
Confidence            99999999888754 589999998865  44444 899999999877 4445555443  3567777777 567888887


Q ss_pred             CCCccEEEEEEccCCccc------ccCceEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          155 STTKGSVLVYNVMELHSH------CEAPLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                        .||+|++||+.+....      +...+..++|+|  ++++|++|+.||+ |++||+++++++.++..  |...|.+++
T Consensus       161 --~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~~~~  235 (304)
T 2ynn_A          161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSFAV  235 (304)
T ss_dssp             --TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEEEEE
T ss_pred             --CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEEEEE
Confidence              5999999999766532      237799999987  7889999999997 69999999999988853  356799999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      |+|+++   +|++|+.||+|+|||+.+.+.
T Consensus       236 ~~p~~~---~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          236 FHPTLP---IIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             ECSSSS---EEEEEETTSCEEEEETTTCCE
T ss_pred             ECCCCC---EEEEEcCCCeEEEEECCCCce
Confidence            999999   999999999999999987653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-34  Score=267.50  Aligned_cols=280  Identities=13%  Similarity=0.112  Sum_probs=206.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeC--------------------CEEEEEEccCCCEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG--------------------AFSIVEMLYSSSLLAIV   64 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~   64 (337)
                      .|...|++++|+|||++||+|+++.++||++.+++.+.....+                    .+..+++.++++.++..
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            3778899999999999999999888999999999876554321                    14556666666776655


Q ss_pred             eCCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           65 GAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        65 ~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      +       .|++|++||+++++.+..+.. ...|.++.|+++.  ++.+. |++|++||+++++....+...   ..+.+
T Consensus       142 ~-------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~~  211 (393)
T 1erj_A          142 A-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVTT  211 (393)
T ss_dssp             E-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEE
T ss_pred             c-------CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcEE
Confidence            4       499999999999988888764 4589999998754  44444 899999999999887776532   24566


Q ss_pred             EeeCC-CccEEEEcCCCCccEEEEEEccCCccc------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          141 FSPSL-NACFLAVPASTTKGSVLVYNVMELHSH------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       141 ~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      +..+| ++.++++++  .||.|++||+.++...            |...|.+++|+|+|++|++|+.||+ |++||+++.
T Consensus       212 ~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~  288 (393)
T 1erj_A          212 VAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNA  288 (393)
T ss_dssp             EEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC---
T ss_pred             EEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            66666 778888887  5999999999876532            3478999999999999999999998 699999764


Q ss_pred             ce------------eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccc
Q 019672          208 TK------------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV  275 (337)
Q Consensus       208 ~~------------~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (337)
                      ..            ...+. + |...|.+++|+|+++   +|++|+.|++|+|||+.++.....       +........
T Consensus       289 ~~~~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~---~l~sgs~D~~v~iwd~~~~~~~~~-------l~~h~~~v~  356 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYI-G-HKDFVLSVATTQNDE---YILSGSKDRGVLFWDKKSGNPLLM-------LQGHRNSVI  356 (393)
T ss_dssp             ------------CEEEEEE-C-CSSCEEEEEECGGGC---EEEEEETTSEEEEEETTTCCEEEE-------EECCSSCEE
T ss_pred             CCcccccCCCCCcceEEEe-c-ccCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCCeEEEE-------ECCCCCCEE
Confidence            32            23332 2 345699999999999   999999999999999876643211       000000001


Q ss_pred             eeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          276 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       276 ~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      .-.|.+.        ..++++++.|++++.||.+++|+++..
T Consensus       357 ~v~~~~~--------~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          357 SVAVANG--------SSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEECSS--------CTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEecCC--------cCcCCCCCEEEEECCCCcEEECccccc
Confidence            1112211        123456789999999999999998653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.5e-36  Score=271.41  Aligned_cols=275  Identities=10%  Similarity=0.157  Sum_probs=191.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC------Cc-eEEEeCCCCcE----EEE--EeeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTK------DG-FKIFDSSTGRL----CYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~------~g-~~vw~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .|+..|++++|+|||++||+|+.      ++ +++|+..++..    ...  .+...+..+++.++.. + ++++     
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~-l~~s-----  112 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-I-LVAS-----  112 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-E-EEEE-----
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-E-EEEE-----
Confidence            47788999999999999999987      33 57888766532    111  2224456666655443 3 3343     


Q ss_pred             CCCceEEEEECCCCCEEEE-----EEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           72 LSPRRLCLFNTTTGTALRE-----LNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~-----~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                       .|++|+|||+.+++....     ..+...|.+++|+++.  ++.+. |+.|++||+++++.+..+..+..  .+.++++
T Consensus       113 -~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~  189 (357)
T 4g56_B          113 -DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS--EVNCVAA  189 (357)
T ss_dssp             -TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred             -CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEE
Confidence             489999999988865432     2345689999998864  44444 88999999999999988876554  4556666


Q ss_pred             CCCcc-EEEEcCCCCccEEEEEEccCCcccc-------cCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          144 SLNAC-FLAVPASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       144 ~~~~~-~la~~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      ++++. ++++++  .||.|++||+++++...       ...+.+++|+|+ +.+||+|+.|+. |++||+++++.+..+.
T Consensus       190 s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          190 CPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             CTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEEC
T ss_pred             ccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEe
Confidence            55543 566666  59999999998876542       267999999997 568999999998 6999999999888875


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCC
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAG  294 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  294 (337)
                      .  +...|++|+|+|++.  .+||+|+.|++|+|||+++.+..+.           +.           +...+..+++.
T Consensus       267 ~--~~~~v~~l~~sp~~~--~~lasgs~D~~i~iwd~~~~~~~~~-----------~~-----------H~~~V~~vafs  320 (357)
T 4g56_B          267 V--HSQNITGLAYSYHSS--PFLASISEDCTVAVLDADFSEVFRD-----------LS-----------HRDFVTGVAWS  320 (357)
T ss_dssp             C--CSSCEEEEEECSSSS--CCEEEEETTSCEEEECTTSCEEEEE-----------CC-----------CSSCEEEEEEC
T ss_pred             c--cceeEEEEEEcCCCC--CEEEEEeCCCEEEEEECCCCcEeEE-----------CC-----------CCCCEEEEEEe
Confidence            3  356799999999984  2899999999999999976543211           11           11112233344


Q ss_pred             c-ccCEEEEEEeCCcEEEEEEecCC
Q 019672          295 V-KRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       295 ~-~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      | ++.+|++++.||+|++|++..+.
T Consensus       321 P~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          321 PLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             SSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCC
Confidence            4 45789999999999999996553

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-33  Score=250.62  Aligned_cols=276  Identities=15%  Similarity=0.177  Sum_probs=209.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|+|++|++|+.++ +++|++.+++.......  ..+..+.+.++.+.++..+       .|+.|++|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~d~~i~vw   92 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS-------DDKTLKIW   92 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC-------CCCEEEEE
Confidence            57889999999999999999998887 59999998887666544  4466666666667766655       48999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+++++.+..+..+ ..|.++.++++.  ++.+. |+.|++||+++++.+..+..+..  .+.++.+++++.++++++  
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--  168 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSS--  168 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEE--
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC--cEEEEEEcCCCCEEEEEe--
Confidence            99999998888754 579999998764  44444 88999999999988888765543  467777788888999888  


Q ss_pred             CccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee-c
Q 019672          157 TKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG-Q  229 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs-~  229 (337)
                      .||.|++||+.+++...      ..++.+++|+|+|++|++++.||. |++||+.+++.+..+..+..........|+ +
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            59999999998876542      267999999999999999999997 699999999988887533222122223444 6


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE--eCC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT--YNG  307 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~--~dg  307 (337)
                      ++.   +|++|+.||+|++||+.+......           +..          +...+..+++.++++.+++++  .||
T Consensus       248 ~~~---~l~sg~~dg~i~vwd~~~~~~~~~-----------~~~----------h~~~v~~~~~~p~~~~l~s~~~~~d~  303 (312)
T 4ery_A          248 GGK---WIVSGSEDNLVYIWNLQTKEIVQK-----------LQG----------HTDVVISTACHPTENIIASAALENDK  303 (312)
T ss_dssp             SSC---EEEECCTTSCEEEEETTTCCEEEE-----------ECC----------CSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred             CCc---EEEEECCCCEEEEEECCCchhhhh-----------hhc----------cCCcEEEEeecCcCCceEEEEccCCc
Confidence            777   999999999999999976543211           110          011112223355567888887  599


Q ss_pred             cEEEEEEe
Q 019672          308 YFVEYIFS  315 (337)
Q Consensus       308 ~~~~~~~~  315 (337)
                      .+++|+.+
T Consensus       304 ~i~~W~~d  311 (312)
T 4ery_A          304 TIKLWKSD  311 (312)
T ss_dssp             CEEEEECC
T ss_pred             cEEEecCC
Confidence            99999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-35  Score=270.87  Aligned_cols=285  Identities=15%  Similarity=0.177  Sum_probs=208.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|.++|++++|+|++++|++|+.|+ ++|||+.+++.......  ..+..+++.++++.++..+       .|+.+++
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~-------~d~~v~i  134 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG-------LDSACSI  134 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC-------SSSCCEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee-------CCCcEEE
Confidence            357889999999999999999999887 69999999987766544  3455556666666655433       5999999


Q ss_pred             EECCCCCE-------EEEE-EcCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCeeeeeecC---CCCCceEEEEeeC
Q 019672           80 FNTTTGTA-------LREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDT---VPNLKGLCAFSPS  144 (337)
Q Consensus        80 wd~~~~~~-------~~~~-~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~  144 (337)
                      ||+.+...       ...+ .|...|.++.+.++   .++.+. |++|++||+.+++.+..+..   ..+...+.+++++
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            99875321       1222 23446777888663   355555 89999999999988776622   2234456777775


Q ss_pred             C-CccEEEEcCCCCccEEEEEEccCC-cc-----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          145 L-NACFLAVPASTTKGSVLVYNVMEL-HS-----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       145 ~-~~~~la~~~~~~dg~v~i~d~~~~-~~-----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      + ++.++++++  .||.|++||++.. ..     .|..+|++++|+|+|++|++|+.||+ |+|||+++++.+..+....
T Consensus       215 ~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~~  291 (380)
T 3iz6_a          215 SLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNREP  291 (380)
T ss_dssp             SSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCCC
T ss_pred             cCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEecccc
Confidence            5 667888887  5999999999743 22     24589999999999999999999998 6999999999887775432


Q ss_pred             c-----ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccC
Q 019672          218 Y-----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP  292 (337)
Q Consensus       218 ~-----~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  292 (337)
                      .     ...|.+++|+|+|+   +|++|+.||+|+|||+........       +......          +...+..+.
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~---~l~~g~~dg~i~vwd~~~~~~~~~-------~~~~~~~----------h~~~v~~l~  351 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLLAEMVLN-------LGTLQNS----------HEGRISCLG  351 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSS---EEEEECTTSCEEEEETTTCCEEEE-------ECCSCSS----------CCCCCCEEE
T ss_pred             cccccccCceEEEEECCCCC---EEEEEECCCCEEEEECCCCceEEE-------EecccCC----------CCCceEEEE
Confidence            1     12388999999999   999999999999999876543211       0000000          111122334


Q ss_pred             CCcccCEEEEEEeCCcEEEEEEecC
Q 019672          293 AGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       293 ~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      +.+++..|++++.||.+++|++...
T Consensus       352 ~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          352 LSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             ECCCCCEEEEeeCCCCEEEEecCCC
Confidence            4667789999999999999998643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-33  Score=252.42  Aligned_cols=282  Identities=11%  Similarity=0.111  Sum_probs=205.3

Q ss_pred             CCCCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCc-----EEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGR-----LCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ..+|.++|++++|+|++ ++|++|+.|+ +++|++.+..     .+....  .+.+..+.+.+++..++..+       .
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s-------~   85 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS-------W   85 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe-------C
Confidence            45799999999999976 7899998887 5999986432     233333  34566667777777766655       4


Q ss_pred             CceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC----
Q 019672           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL----  145 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----  145 (337)
                      |++|++||+++++++..+.. ..+|.++.++++.  ++.+. |++|++||++. +.+..+..+..  .+.++.+.|    
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~--~v~~~~~~~~~~~  162 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND--WVSQVRVVPNEKA  162 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS--CEEEEEECCC---
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC--cEEEEEEccCCCC
Confidence            99999999999999888764 4589999998765  34444 88999999974 45556655444  344555444    


Q ss_pred             --CccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672          146 --NACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       146 --~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                        ++..+++++  .|+.|++||+.+.+..     |..+|++++|+|+|++||+|+.||+ |+|||+.+++.+..+..   
T Consensus       163 ~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---  236 (319)
T 3frx_A          163 DDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---  236 (319)
T ss_dssp             ---CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---
T ss_pred             CCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---
Confidence              344788877  5999999999887643     4589999999999999999999997 69999999999888853   


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccC
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA  298 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  298 (337)
                      ...|.+++|+|++.   +|++++.+ .+++|+++..........  . .......          +...+..+++.++++
T Consensus       237 ~~~v~~~~~sp~~~---~la~~~~~-~i~v~~~~~~~~~~~~~~--~-~~~~~~~----------~~~~v~~~~~spdg~  299 (319)
T 3frx_A          237 QDEVFSLAFSPNRY---WLAAATAT-GIKVFSLDPQYLVDDLRP--E-FAGYSKA----------AEPHAVSLAWSADGQ  299 (319)
T ss_dssp             CSCEEEEEECSSSS---EEEEEETT-EEEEEEETTEEEEEEECC--C-CTTCCGG----------GCCCEEEEEECTTSS
T ss_pred             CCcEEEEEEcCCCC---EEEEEcCC-CcEEEEeCcCeeeeccCc--c-ccccccC----------cCcceeEEEECCCCC
Confidence            34699999999999   88888765 599999876432211000  0 0000000          001112344567779


Q ss_pred             EEEEEEeCCcEEEEEEecC
Q 019672          299 SVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       299 ~l~~~~~dg~~~~~~~~~~  317 (337)
                      +|++++.||.+++|++.+.
T Consensus       300 ~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          300 TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEETTSCEEEEEEEEC
T ss_pred             EEEEeecCceEEEEEEeec
Confidence            9999999999999999764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8e-34  Score=276.10  Aligned_cols=278  Identities=14%  Similarity=0.103  Sum_probs=202.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe---------eCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA---------VGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ..|...|++++|+|||++|++|+.|+ +++||+.+++.+....         ...+..+.+.+++..++..+       .
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s-------~  259 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-------A  259 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe-------C
Confidence            46788999999999999999998877 6999999888766542         23466667776777776655       4


Q ss_pred             CceEEEEECCCCCEEEEEE--------------------------------------------cCCceeEEEEcCCe--E
Q 019672           74 PRRLCLFNTTTGTALRELN--------------------------------------------FLTSILAVRLNKKR--L  107 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~--------------------------------------------~~~~v~~i~~~~~~--~  107 (337)
                      |++|++||+++++++.++.                                            |...|.+++|++++  +
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l  339 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL  339 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence            9999999999887665442                                            33478999998765  4


Q ss_pred             EEEE-CCeEEEEECCCCeeeeeec-CC-----------------------------------------------------
Q 019672          108 VIVL-REKTYIYDANTLAILDTID-TV-----------------------------------------------------  132 (337)
Q Consensus       108 ~v~~-d~~i~i~d~~~~~~~~~~~-~~-----------------------------------------------------  132 (337)
                      +.+. |++|++||+.+++....+. .+                                                     
T Consensus       340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (611)
T 1nr0_A          340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV  419 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred             EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence            4444 8999999998765433210 00                                                     


Q ss_pred             -CC-------------------------CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEE
Q 019672          133 -PN-------------------------LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAI  180 (337)
Q Consensus       133 -~~-------------------------~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~  180 (337)
                       ++                         ...+.+++++|++.++|+++  .|+.|++||+.+...      .|...|+++
T Consensus       420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v  497 (611)
T 1nr0_A          420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSV  497 (611)
T ss_dssp             CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEE
T ss_pred             eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeC--CCCeEEEEEccCCceeeeeccCCCCceEEE
Confidence             00                         01234677788999999988  599999999976532      255889999


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC
Q 019672          181 VLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  259 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~  259 (337)
                      +|+|||++||+++.|++ |++||+.+ ++.+.....+.|...|.+|+|||||+   +||+|+.|++|+||+++.+.....
T Consensus       498 ~fspdg~~las~s~d~~-v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~---~lasgs~D~~v~lW~~~~~~~~~~  573 (611)
T 1nr0_A          498 AFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV---RLATGSLDNSVIVWNMNKPSDHPI  573 (611)
T ss_dssp             EECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTCTTSCCE
T ss_pred             EECCCCCEEEEEcCCCC-EEEEEcCCCCceeeeeeeeecccceeEEEECCCCC---EEEEEECCCcEEEEECCCcccccc
Confidence            99999999999999998 69999988 55544312233567899999999999   999999999999999976543110


Q ss_pred             CCccccccccccccc-ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          260 GGRTSSILGSILPES-VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       260 ~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                               ..+... ...++          .+.+.+++. |++++.||++++|++
T Consensus       574 ---------~~~~~h~~~~v~----------~v~fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          574 ---------IIKGAHAMSSVN----------SVIWLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             ---------EETTSSTTSCEE----------EEEEEETTE-EEEEETTSCEEEEEC
T ss_pred             ---------hhhccCcccCee----------EEEEcCCCE-EEEecCCCCEEEEec
Confidence                     001000 11122          222344445 999999999999987

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=256.40  Aligned_cols=234  Identities=9%  Similarity=0.057  Sum_probs=178.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEE----E--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE----R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|++++|+||+. |++|+.++ ++|||+++++.+..    .  +...+..+++.++++.++..+       .|++|++
T Consensus        82 ~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs-------~d~~i~i  153 (344)
T 4gqb_B           82 EAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS-------KDICIKV  153 (344)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             CCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe-------CCCeEEE
Confidence            46799999999965 56666665 69999998864322    2  224566777777777776655       4999999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC-ccEEEEc
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVP  153 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~la~~  153 (337)
                      ||+++++++..+.. ...|.++.|+++.   ++.+. |++|++||+++++....+....+...+.+++++|+ +.+++++
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            99999999988874 4589999998653   34444 89999999999988887765444445667777764 4577777


Q ss_pred             CCCCccEEEEEEccCCccc-----ccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          154 ASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      +  .||.|++||+++++.+     |..+|++++|+|+| ++||+||.||+ |+|||+.+++.+. +. + |...|++|+|
T Consensus       234 ~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~~-~-H~~~V~~v~~  307 (344)
T 4gqb_B          234 D--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-SQ-A-HRDFVRDATW  307 (344)
T ss_dssp             E--TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-EC-C-CSSCEEEEEE
T ss_pred             c--cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-Ec-C-CCCCEEEEEE
Confidence            6  5999999999988764     44889999999998 58999999998 6999999987654 42 3 4667999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ||+++  .+|+++|.|++|++|+++++..
T Consensus       308 sp~~~--~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          308 SPLNH--SLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             CSSST--TEEEEEETTSCEEEEECCC---
T ss_pred             eCCCC--eEEEEEcCCCeEEEEECCCCCC
Confidence            99987  2688999999999999986543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.5e-33  Score=249.94  Aligned_cols=289  Identities=12%  Similarity=0.111  Sum_probs=198.9

Q ss_pred             CCCCCCCeEEEEE-----cC-CCCEEEEEcCCc-eEEEeCCCCc-------EEEEEe--eCCEEEEEEccCCCEEEEEeC
Q 019672            3 NQSSSYPVFFVSF-----NQ-DNSGFALSTKDG-FKIFDSSTGR-------LCYERA--VGAFSIVEMLYSSSLLAIVGA   66 (337)
Q Consensus         3 ~~~~~~~v~~~~f-----s~-dg~~la~g~~~g-~~vw~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~   66 (337)
                      ..+|..+|++++|     ++ |+++|++|+.|+ +++||+.+.+       ......  ...+..+.+.++...++..+ 
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s-   95 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS-   95 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE-
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc-
Confidence            3478999999999     76 999999999887 6999987542       223332  34566666666666665544 


Q ss_pred             CCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEe
Q 019672           67 GEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        67 g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  142 (337)
                            .|++|++||+++++.+..+.. ...|.+++|+++.  ++.+. |++|++||+.............+...+.++.
T Consensus        96 ------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           96 ------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             ------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             ------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence                  499999999999999888764 4589999998764  44444 8999999997543332222223334566666


Q ss_pred             eCCCc----------cEEEEcCCCCccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-C
Q 019672          143 PSLNA----------CFLAVPASTTKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-A  207 (337)
Q Consensus       143 ~~~~~----------~~la~~~~~~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~  207 (337)
                      ++|++          .++++++  .||.|++||......    .|..+|++++|+|+|++||+|+.||+ |++||+.+ +
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~~  246 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVG--WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNLT  246 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCCS
T ss_pred             eccccccccccCCCCCEEEEEc--CCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCCc
Confidence            66654          6888887  599999999543221    24588999999999999999999998 69999954 4


Q ss_pred             ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceee
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL  287 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  287 (337)
                      .....+..   ...|.+++|+|+++   +|+++ .|+.|+||++.+.......    .    +.+......-....+...
T Consensus       247 ~~~~~~~~---~~~v~~v~~sp~~~---~la~~-~d~~v~iw~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~  311 (343)
T 2xzm_R          247 YPQREFDA---GSTINQIAFNPKLQ---WVAVG-TDQGVKIFNLMTQSKAPVC----T----IEAEPITKAEGQKGKNPQ  311 (343)
T ss_dssp             SCSEEEEC---SSCEEEEEECSSSC---EEEEE-ESSCEEEEESSSCCSCSEE----E----CCCCSGGGBTTBCCSCCC
T ss_pred             ccceeecC---CCcEEEEEECCCCC---EEEEE-CCCCEEEEEeCCCCCCceE----E----eecCcchhhhhhcCCCCc
Confidence            44444422   23599999999998   77655 5778999999765432200    0    000000000000011112


Q ss_pred             eeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          288 RNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       288 ~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      +..+++.++++.|++++.||.+++|++++
T Consensus       312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          312 CTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             eEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            23445567779999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.6e-33  Score=252.78  Aligned_cols=287  Identities=12%  Similarity=0.168  Sum_probs=204.2

Q ss_pred             CCCCC-CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEE--E---eeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            4 QSSSY-PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--R---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         4 ~~~~~-~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .+|.. +|++++|+|||++||+|+.|+ ++|||+++++....  .   +...+..+++.++++.++..+       .|++
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s-------~D~~   84 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-------FDAT   84 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-------CCCc
Confidence            35666 899999999999999998877 69999988754322  1   224567777777777776655       4999


Q ss_pred             EEEEECCCCC--EEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeCCCc
Q 019672           77 LCLFNTTTGT--ALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        77 v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      |++||..++.  ++..+. +..+|.+++|+++.  ++.+. |+.|++||+.++..   +..+..+  ...+.++.++|++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCC
Confidence            9999998775  345554 44589999998764  44444 89999999987633   3444433  3457777888888


Q ss_pred             cEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC-------------
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-------------  207 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~-------------  207 (337)
                      .+|++++  .|+.|++||+.+...       .|..+|++++|+|+|++||+|+.||+ |+|||...+             
T Consensus       163 ~~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          163 ELLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SCEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred             CEEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence            8999988  599999999987642       24589999999999999999999998 699997432             


Q ss_pred             --ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccce
Q 019672          208 --TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  285 (337)
Q Consensus       208 --~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  285 (337)
                        +.+..+. +.+...|++++|+|++.   .|++++.|++|+||++.....+..+.  .........          .+.
T Consensus       240 ~~~~~~~~~-~~h~~~v~~v~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~~~----------~h~  303 (345)
T 3fm0_A          240 SWKCICTLS-GFHSRTIYDIAWCQLTG---ALATACGDDAIRVFQEDPNSDPQQPT--FSLTAHLHQ----------AHS  303 (345)
T ss_dssp             EEEEEEEEC-SSCSSCEEEEEECTTTC---CEEEEETTSCEEEEEECTTSCTTSCC--EEEEEEETT----------SSS
T ss_pred             ccceeEEec-CCCCCcEEEEEEecCCC---EEEEEeCCCeEEEEEeCCCCCcceee--EEEEeeecc----------ccc
Confidence              1233332 33556799999999999   99999999999999987654322100  000000000          111


Q ss_pred             eeeeccCCCccc-CEEEEEEeCCcEEEEEEecCC
Q 019672          286 VLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       286 ~~~~~~~~~~~~-~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      ..+..+++.|++ ..|++++.||.+++|++...+
T Consensus       304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            123334445554 478899999999999997654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.4e-33  Score=274.34  Aligned_cols=281  Identities=16%  Similarity=0.180  Sum_probs=209.7

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            4 QSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+|..+|++++|+|++. .|++|+.|+ +++||..+++.+.....|  .+..+++.++++.++..+       .|++|++
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-------~D~~i~l  216 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-------GDGTIVL  216 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-------CCCcEEE
Confidence            46788999999999997 588888877 699999988877665443  466667777777766655       4999999


Q ss_pred             EECCCCCEEEEE--------EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCC----------------
Q 019672           80 FNTTTGTALREL--------NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTV----------------  132 (337)
Q Consensus        80 wd~~~~~~~~~~--------~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~----------------  132 (337)
                      ||..+++++..+        .|...|.+++|+|+.  ++.+. |++|++||+.+++.+..+..+                
T Consensus       217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            999999988877        355689999998865  44444 899999999988766544211                


Q ss_pred             -------------------------CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc---------------
Q 019672          133 -------------------------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH---------------  172 (337)
Q Consensus       133 -------------------------~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------------  172 (337)
                                               .+...+.+++++|++.+|++++  .|+.|++||+.++...               
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s--~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~  374 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD--AEGHINSWDISTGISNRVFPDVHATMITGIK  374 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence                                     2334577888889999999988  5999999998754210               


Q ss_pred             ------------------------------------------------------------------------ccCceEEE
Q 019672          173 ------------------------------------------------------------------------CEAPLAAI  180 (337)
Q Consensus       173 ------------------------------------------------------------------------~~~~i~~~  180 (337)
                                                                                              +...+.++
T Consensus       375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v  454 (611)
T 1nr0_A          375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV  454 (611)
T ss_dssp             ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred             ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence                                                                                    01236789


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCC
Q 019672          181 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG  260 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~  260 (337)
                      +|+|||++||+|+.||+ |+|||+.+++....... .|...|++|+|||||+   +|++++.|++|++|++.+..+... 
T Consensus       455 a~spdg~~lasgs~D~~-v~lwd~~~~~~~~~~~~-~h~~~v~~v~fspdg~---~las~s~d~~v~~w~~~~~~~~~~-  528 (611)
T 1nr0_A          455 ALSNDKQFVAVGGQDSK-VHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGA---FLVATDQSRKVIPYSVANNFELAH-  528 (611)
T ss_dssp             EECTTSCEEEEEETTSE-EEEEEEETTEEEEEEEE-ECSSCEEEEEECTTSS---EEEEEETTSCEEEEEGGGTTEESC-
T ss_pred             EEeCCCCEEEEeCCCCe-EEEEEccCCceeeeecc-CCCCceEEEEECCCCC---EEEEEcCCCCEEEEEcCCCCceee-
Confidence            99999999999999997 69999987654211112 2456799999999999   999999999999999875322110 


Q ss_pred             CcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          261 GRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                        . .    ....          +...+..+.+.|++++|++++.||++++|+++.
T Consensus       529 --~-~----~~~~----------H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          529 --T-N----SWTF----------HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             --C-C----CCCC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             --e-e----eeee----------cccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence              0 0    0000          111223444577789999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5e-33  Score=249.48  Aligned_cols=232  Identities=15%  Similarity=0.200  Sum_probs=193.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .++...|++++|++++.++++|+.++ +++||+.+++.+.....+.  +..+.+.++++.++..+       .|++|++|
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~-------~dg~v~i~  149 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT-------HVGKVNIF  149 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEEC-------TTSEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEc-------CCCcEEEE
Confidence            57888999999999999999998877 6999999998877665433  44456666667665544       48999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+++++....+..+ ..|.+++|+++.  ++++. |+.|++||+++++.+..+..+..  .+.+++++|++.+|++++  
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~spd~~~l~s~s--  225 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTAS--  225 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CCCEEEECTTSCEEEEEC--
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC--ceeEEEEcCCCCEEEEEc--
Confidence            99999988877655 479999998865  44444 89999999999999888876544  455667778888999988  


Q ss_pred             CccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          157 TKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      .||.|++||+++....     |..+|.+++|+|+|++|++|+.||+ |+|||+.+++.+.++..  +...|.+++|+|++
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNG  302 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTS
T ss_pred             CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECCCC
Confidence            5999999999887654     4478999999999999999999998 69999999999988853  45679999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecC
Q 019672          232 QFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~  252 (337)
                      +   +|++++.||+|+|||+.
T Consensus       303 ~---~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          303 S---KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             S---EEEEEETTCCEEEEECC
T ss_pred             C---EEEEEeCCCeEEEEeCC
Confidence            9   99999999999999964

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.5e-33  Score=252.38  Aligned_cols=193  Identities=10%  Similarity=0.123  Sum_probs=156.2

Q ss_pred             EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEE--EECCeEEEEECCCCeeee
Q 019672           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI--VLREKTYIYDANTLAILD  127 (337)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v--~~d~~i~i~d~~~~~~~~  127 (337)
                      ..+++.+++..+++++++     .|++|+|||+++++++.++.++.+|.+++|+|++..+  +.++.+.+|+..+++.+.
T Consensus       137 ~~v~fSpDg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEEECTTSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred             EEEEEcCCCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence            345666777777777763     6899999999999999999998999999999875443  448888999888877665


Q ss_pred             eecCCCCCceEEEEeeCCCccEEEEcCCCCcc----EEEEEEccCCcc---------cccCceEEEEeCCCCCEEEEEeC
Q 019672          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKG----SVLVYNVMELHS---------HCEAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg----~v~i~d~~~~~~---------~~~~~i~~~~~s~dg~~lat~s~  194 (337)
                      ......+...+.++.++|++.++++++.  ++    .+++||+.....         .+..+|++++|||||++||+|+.
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~--d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASL--KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEE--SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEec--CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            4433344456777788888889888763  43    688898875542         13378999999999999999999


Q ss_pred             CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          195 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ||+ |+|||+++++.+.++..+ |...|++|+|||||+   +||+||.|++|+||+++..
T Consensus       290 D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~---~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDST---YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSC---EEEEEETTSEEEEEECCTT
T ss_pred             CCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCC---EEEEEeCCCeEEEEEcCCC
Confidence            998 699999999999887555 467899999999999   9999999999999999654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.9e-33  Score=253.83  Aligned_cols=236  Identities=9%  Similarity=0.054  Sum_probs=178.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEE----EE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCY----ER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .+...|++++|+|++++++++.++.++|||+.+++...    ..  +...+..+++.++++.++..+       .|++|+
T Consensus        92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-------~dg~v~  164 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-------KDFSVK  164 (357)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-------TTSCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-------CCCeEE
Confidence            35678999999999988777766668999998876432    22  224566677777777766554       489999


Q ss_pred             EEECCCCCEEEEEEcC-CceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc-cEEEE
Q 019672           79 LFNTTTGTALRELNFL-TSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAV  152 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~  152 (337)
                      +||+++++++..+..+ ..|.+++|+++.   ++.+. |+.|++||+++++....+....+...+.+++++|++ .++++
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence            9999999999888654 589999997643   44444 899999999998877776555555567777887764 56777


Q ss_pred             cCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          153 PASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      ++  .|+.|++||+++++..     +..+|++++|+|++ ++||+|+.||+ |+|||+++++.+..+  + |...|++|+
T Consensus       245 g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~--~-H~~~V~~va  318 (357)
T 4g56_B          245 GD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL--S-HRDFVTGVA  318 (357)
T ss_dssp             EE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC--C-CSSCEEEEE
T ss_pred             ee--cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC--C-CCCCEEEEE
Confidence            66  5899999999987754     33889999999987 57999999998 699999999887655  2 466799999


Q ss_pred             eec-CCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          227 FGQ-SMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       227 fs~-dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ||| |++   +|++++.||+|++|++....+
T Consensus       319 fsP~d~~---~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          319 WSPLDHS---KFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             ECSSSTT---EEEEEETTSCEEEEECC----
T ss_pred             EeCCCCC---EEEEEcCCCeEEEEECCCCCc
Confidence            998 788   999999999999999976543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-32  Score=244.01  Aligned_cols=278  Identities=13%  Similarity=0.128  Sum_probs=214.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|..+|++++|+|+|++|++|+.++ +++||+.+++.+.....  ..+..+.+.++.+.++.++       .|++|++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~dg~i~i  100 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGS-------ADYSIKL  100 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTTEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEe-------CCCeEEE
Confidence            357889999999999999999998877 69999999988776654  4456666666667776655       4899999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-C-----CeEEEEECCCCee-----------eeeecCCCCCceEEE
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-R-----EKTYIYDANTLAI-----------LDTIDTVPNLKGLCA  140 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d-----~~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~  140 (337)
                      ||+.+++.+..+.+..+|.++.|+++.  ++++. +     +.|++||+.....           +..+..+.....+.+
T Consensus       101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999999999988899999998764  34444 5     8999999976532           222222333236778


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccC-Cccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVME-LHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~-~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      ++++|++.++++++  .+|.|++||+.+ ....     +..+|.+++|+|++++|++++.||. |++||+.+++.+..+.
T Consensus       181 ~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          181 AGWSTKGKYIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEECGGGCEEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeeec
Confidence            88888888999887  589999999987 4432     3488999999999999999999997 6999999999988875


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeCCC--------------cEEEEecCCCcccCCCCcccccccccccccceeecc
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSSSG--------------SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  280 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg--------------~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  280 (337)
                         +...+.+++|+|+++   ++++++.++              .+++||+.+......       +    ..       
T Consensus       258 ---~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-------~----~~-------  313 (369)
T 3zwl_B          258 ---TDCPLNTAVITPLKE---FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR-------V----QG-------  313 (369)
T ss_dssp             ---CSSCEEEEEECSSSS---EEEEEECCC-------------CEEEEEETTTCCEEEE-------E----EC-------
T ss_pred             ---CCCCceeEEecCCCc---eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh-------e----ec-------
Confidence               345699999999999   999999998              788998876543211       0    00       


Q ss_pred             cccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          281 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                         +...+..+.+.++++.|++++.||.+++|+++..
T Consensus       314 ---~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          314 ---HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ---CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ---ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence               0011222334556689999999999999999754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.6e-32  Score=241.36  Aligned_cols=285  Identities=12%  Similarity=0.103  Sum_probs=204.0

Q ss_pred             CCCCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCCCcE-----EEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL-----CYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      +.+|.++|++++|+|+ +++|++|+.|+ ++|||+.+.+.     .....  ...+..+.+.++++.++..+       .
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-------~  106 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-------W  106 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-------T
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-------c
Confidence            4579999999999998 58999998877 69999876532     22232  34566677777777766554       4


Q ss_pred             CceEEEEECCCCCEEEEEEcCC-ceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeee-eecCCCCCceEEEEeeCCCcc
Q 019672           74 PRRLCLFNTTTGTALRELNFLT-SILAVRLNKK--RLVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNAC  148 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  148 (337)
                      |+.|++|+...+.......... .+..+.+.++  .++.+. |+.+++||+....... ....+......+++++++...
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            9999999999888777665544 5666666543  444455 8899999997664433 233334444455666666677


Q ss_pred             EEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      ++++++  .|+.|++||+.+.+..     |..+|++++|+|+|++||+|+.||+ |++||+.+++.+..+..   ...|.
T Consensus       187 ~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~  260 (340)
T 4aow_A          187 IIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIIN  260 (340)
T ss_dssp             EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEE
T ss_pred             EEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEE
Confidence            788877  5899999999987654     3489999999999999999999998 69999999999888753   34699


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEE
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  303 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~  303 (337)
                      +++|+|++.    +++++.|++|+|||++............  ...          ....+...+..+.+.+++++|+++
T Consensus       261 ~~~~~~~~~----~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~----------~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          261 ALCFSPNRY----WLCAATGPSIKIWDLEGKIIVDELKQEV--IST----------SSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             EEEECSSSS----EEEEEETTEEEEEETTTTEEEEEECCC-------------------CCCCCEEEEEECTTSSEEEEE
T ss_pred             eeecCCCCc----eeeccCCCEEEEEECCCCeEEEeccccc--eee----------eccCCCCCEEEEEECCCCCEEEEE
Confidence            999999986    6667789999999997654321100000  000          000111122334456677999999


Q ss_pred             EeCCcEEEEEEec
Q 019672          304 TYNGYFVEYIFSI  316 (337)
Q Consensus       304 ~~dg~~~~~~~~~  316 (337)
                      +.||.|++|++.+
T Consensus       325 s~Dg~v~iW~~~t  337 (340)
T 4aow_A          325 YTDNLVRVWQVTI  337 (340)
T ss_dssp             ETTSCEEEEEEEC
T ss_pred             eCCCEEEEEeCCC
Confidence            9999999999875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3e-32  Score=252.49  Aligned_cols=232  Identities=13%  Similarity=0.147  Sum_probs=189.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..|..+|++++|+|+|++|++|+.|+ +++||+.+++.+.....  +.+..+.+.++++.++..+       .|++|++|
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s-------~D~~i~~w  219 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-------RDKTIKMW  219 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE-------TTSEEEEE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe-------CCCeEEEE
Confidence            46788999999999999999999887 59999999888766544  4566667766667766554       49999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC----------
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----------  146 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  146 (337)
                      |+++++++..+..+. .|.++.++++.  ++.+. |+.|++||+.+++....+..+..  .+.+++++|+          
T Consensus       220 d~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYSSISEAT  297 (410)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGGGGGCC
T ss_pred             ECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc--eEEEEEEcCcccccchhhhc
Confidence            999999998887554 79999998765  34444 89999999999988888876554  4555555553          


Q ss_pred             ----------ccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          147 ----------ACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       147 ----------~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                                +.++++++  .||.|++||+.++...     |...|++++|+|+|++|++|+.||+ |++||+.+++.+.
T Consensus       298 ~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~  374 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  374 (410)
T ss_dssp             SCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             cccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEE
Confidence                      55788887  5999999999988754     4488999999999999999999997 6999999999888


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+..  |...|++++|+|+++   +|++|+.||+|+||+++
T Consensus       375 ~~~~--h~~~v~~l~~~~~~~---~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNA--HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEC--CSSCEEEEEECSSSS---CEEEEETTSEEEEEC--
T ss_pred             EEcC--CCCcEEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Confidence            8853  456799999999999   99999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-32  Score=245.91  Aligned_cols=228  Identities=13%  Similarity=0.132  Sum_probs=182.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----EEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .+...|.+++|+|+|++|++|+.++ +++|++.+.+    .......  ..+..+.+..+ +.++..+       .|++|
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s-------~d~~i  166 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSS-------GDTTC  166 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEE-------TTSCE
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEE-------CCCcE
Confidence            4667899999999999999998887 5999988753    2233332  34454555433 3343333       49999


Q ss_pred             EEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           78 CLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      ++||+++++++..+.. ...|.++.++++.  ++.+. |+.|++||+++++.+..+..+..  .+.+++++|++.+++++
T Consensus       167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~  244 (340)
T 1got_B          167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATG  244 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEE
Confidence            9999999999888864 4589999998865  33344 89999999999988888875543  57778888889999998


Q ss_pred             CCCCccEEEEEEccCCccccc-------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          154 ASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      +  .||.|++||+++.+....       ..|.+++|+|+|++|++|+.||+ |++||+.+++.+..+. + |...|.+++
T Consensus       245 s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~-~-h~~~v~~~~  319 (340)
T 1got_B          245 S--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA-G-HDNRVSCLG  319 (340)
T ss_dssp             E--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE-C-CSSCEEEEE
T ss_pred             c--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEee-c-CCCcEEEEE
Confidence            8  599999999988764321       47999999999999999999997 6999999999888875 3 456899999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEe
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      |+|||+   +|++|+.|++|+|||
T Consensus       320 ~s~dg~---~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSS---CEEEEETTSCEEEEC
T ss_pred             EcCCCC---EEEEEcCCccEEecC
Confidence            999999   999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.9e-31  Score=234.76  Aligned_cols=271  Identities=13%  Similarity=0.130  Sum_probs=206.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE---EEE----EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL---CYE----RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .+..+|++++|+|++++|++++++.+++||+.+++.   ...    .+...+..+.+.++.+.++..+.       |+.|
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i  121 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-------ASTL  121 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-------SSEE
T ss_pred             cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-------CCcE
Confidence            578899999999999999999955579999987642   222    12345666777777777766553       8999


Q ss_pred             EEEECCCCC--EEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           78 CLFNTTTGT--ALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        78 ~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ++||+++++  ....+. +...|.++.++++.  ++++. ++.|++||+++++.+..+..+.  ..+.++.++|++.+++
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEE
Confidence            999999887  344444 34579999998764  44454 8899999999998888886543  3577778888888999


Q ss_pred             EcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          152 VPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      +++  .||.|++||+.+++...    ..++.+++|+|+|++|++++.||. |++||+.+++.. .+.  .+...|.+++|
T Consensus       200 ~~~--~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~--~~~~~v~~~~~  273 (337)
T 1gxr_A          200 TGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLH--LHESCVLSLKF  273 (337)
T ss_dssp             EEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EEC--CCSSCEEEEEE
T ss_pred             EEe--cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEc--CCccceeEEEE
Confidence            887  59999999999877543    388999999999999999999998 699999988764 332  24567999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      +|+++   +|++++.||.|++||+++......       . .. +..             +..+.+.++++.|++++.||
T Consensus       274 ~~~~~---~l~~~~~dg~i~~~~~~~~~~~~~-------~-~~-~~~-------------v~~~~~s~~~~~l~~~~~dg  328 (337)
T 1gxr_A          274 AYCGK---WFVSTGKDNLLNAWRTPYGASIFQ-------S-KE-SSS-------------VLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CTTSS---EEEEEETTSEEEEEETTTCCEEEE-------E-EC-SSC-------------EEEEEECTTSCEEEEEETTS
T ss_pred             CCCCC---EEEEecCCCcEEEEECCCCeEEEE-------e-cC-CCc-------------EEEEEECCCCCEEEEecCCC
Confidence            99999   999999999999999987643210       0 00 000             11223345568999999999


Q ss_pred             cEEEEEEe
Q 019672          308 YFVEYIFS  315 (337)
Q Consensus       308 ~~~~~~~~  315 (337)
                      .+++|++-
T Consensus       329 ~i~iw~~~  336 (337)
T 1gxr_A          329 KATVYEVI  336 (337)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999873

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8e-32  Score=241.27  Aligned_cols=233  Identities=15%  Similarity=0.181  Sum_probs=186.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|||++|++|+.|+ +++||+.+++.+.....  ..+..+.+.++.+.++..+       .|++|++|
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~D~~i~vw  134 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS-------RDKTIKVW  134 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE-------TTSCEEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe-------CCCeEEEE
Confidence            46888999999999999999998877 69999999988766654  4455566666666665544       49999999


Q ss_pred             ECCCCCEEEEEE-cCCceeEEEEcCC--------eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           81 NTTTGTALRELN-FLTSILAVRLNKK--------RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~~~--------~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      |++. +++..+. +...|.++.+.+.        .++.+. |+.|++||+++.+....+..+.  ..+.+++++|++.+|
T Consensus       135 d~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l  211 (319)
T 3frx_A          135 TIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SNINTLTASPDGTLI  211 (319)
T ss_dssp             ETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SCEEEEEECTTSSEE
T ss_pred             ECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--CcEEEEEEcCCCCEE
Confidence            9974 4555554 4558999999774        344444 8899999999998887776554  357778888899999


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC------cce
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT------YPS  220 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~------~~~  220 (337)
                      ++++  .||.|++||+.+.+....    .+|.+++|+|+|.+|++++.++  +++|++..+..+..++...      +..
T Consensus       212 ~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~~~~~~~~~~~~~~~~~~~  287 (319)
T 3frx_A          212 ASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKAAEP  287 (319)
T ss_dssp             EEEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTEEEEEEECCCCTTCCGGGCC
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCeeeeccCccccccccCcCc
Confidence            9988  599999999998775533    7899999999999999998775  6899999887776664321      234


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .+.+++|||||+   +|++|+.||+|+|||+.+
T Consensus       288 ~v~~~~~spdg~---~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          288 HAVSLAWSADGQ---TLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CEEEEEECTTSS---EEEEEETTSCEEEEEEEE
T ss_pred             ceeEEEECCCCC---EEEEeecCceEEEEEEee
Confidence            589999999999   999999999999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-31  Score=241.92  Aligned_cols=280  Identities=13%  Similarity=0.116  Sum_probs=205.6

Q ss_pred             CCCCCCeEEEEEcCC---CC--EEEEEcCCceEEEeCCCCcEEEEEee-------CCEEEEEEccCCC----EEEEEeCC
Q 019672            4 QSSSYPVFFVSFNQD---NS--GFALSTKDGFKIFDSSTGRLCYERAV-------GAFSIVEMLYSSS----LLAIVGAG   67 (337)
Q Consensus         4 ~~~~~~v~~~~fs~d---g~--~la~g~~~g~~vw~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~g   67 (337)
                      ..|..+|++++|+|+   +.  ++++++++.+++||+.+++.+.....       ..+..+++.++.+    .++..+  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG--   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE--
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec--
Confidence            368899999999984   43  56666677789999998766543321       3466666666632    444433  


Q ss_pred             CCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcC-C--eEEEEE-CCeEEEEECCCCeeeeeecC-CCCCceEEEE
Q 019672           68 EQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAF  141 (337)
Q Consensus        68 ~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~  141 (337)
                           .|+.|++||+.+++.+..+. +..+|.++.|++ +  .++++. |+.|++||+++++.+..+.. ..+...+.++
T Consensus        93 -----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 -----SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             -----TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             -----CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence                 48999999999999998887 556899999987 3  455555 88999999999988877732 2334567888


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCccc---------------------------------ccCceEEEEeCCCCCE
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSH---------------------------------CEAPLAAIVLSSNGMY  188 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------------------------------~~~~i~~~~~s~dg~~  188 (337)
                      .++|++.++++++  .||.|++||+.+++..                                 +..+|.+++|+  +++
T Consensus       168 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          168 DYDLLGEKIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             EECTTSSEEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             EECCCCCEEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            8888899999988  4899999999876543                                 55889999998  779


Q ss_pred             EEEEeCCCcEEEEEEcCCCce--------------eEeeccCCcceeEEEEEeecC--CCcccEEEEEeCCCcEEEEecC
Q 019672          189 IATASEQGTIIRVFLVSEATK--------------SYSFRRGTYPSTIFSLSFGQS--MQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       189 lat~s~dg~~i~vwd~~~~~~--------------~~~~~~~~~~~~i~~l~fs~d--g~~~~~las~s~dg~v~iw~l~  252 (337)
                      |++++.||. |++||+.+++.              +..+..  +...|.+++|+|+  ++   +|++++.||.|+|||+.
T Consensus       244 l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~---~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          244 ILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQK---MLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             EEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSS---EEEEECTTSCEEEEECC
T ss_pred             EEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCc---EEEEEecCCcEEEEECC
Confidence            999999997 69999988754              444432  3456889999999  99   99999999999999998


Q ss_pred             CCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          253 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ........      .. .+...        .+...+..+.+.++++.|++++.||.+++|++.
T Consensus       318 ~~~~~~~~------~~-~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          318 VEDPHKAK------CT-TLTHH--------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSSGGGCE------EE-EECCT--------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCcccc------ce-EEccc--------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            76532210      00 00000        001112233345566899999999999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-31  Score=236.90  Aligned_cols=236  Identities=12%  Similarity=0.144  Sum_probs=174.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEEee--CCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+|..+|++++|+|+|++||+|+.|+ ++|||+++.  +.+.....  ..+..+++.++  ++.++.++       .|+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s-------~D~   77 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   77 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTT
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc-------CCC
Confidence            568999999999999999999999887 699998753  44444443  44555555443  45555544       499


Q ss_pred             eEEEEECCCCC--EEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEEEEECCCCee--eeeecCCCCCceEEEEeeCC
Q 019672           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        76 ~v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~  145 (337)
                      +|++||+++++  .+..+. +...|.++.|+++    .++++. |+.|++||+++...  ...+..+  ...+.+++++|
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h--~~~v~~~~~~p  155 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH--AIGVNSASWAP  155 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC--SSCEEEEEECC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc--cCccceEeecC
Confidence            99999998874  444444 4568999999874    345555 89999999987632  2333333  33566666665


Q ss_pred             C-------------ccEEEEcCCCCccEEEEEEccCCc----c-----cccCceEEEEeCCCC---CEEEEEeCCCcEEE
Q 019672          146 N-------------ACFLAVPASTTKGSVLVYNVMELH----S-----HCEAPLAAIVLSSNG---MYIATASEQGTIIR  200 (337)
Q Consensus       146 ~-------------~~~la~~~~~~dg~v~i~d~~~~~----~-----~~~~~i~~~~~s~dg---~~lat~s~dg~~i~  200 (337)
                      +             +.+|++++  .|+.|++||+.+..    .     .|..+|.+++|+|++   ++||+++.||+ |+
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~  232 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CI  232 (297)
T ss_dssp             CC------------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred             CcccccccCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EE
Confidence            4             45888887  59999999998654    1     245889999999995   89999999998 69


Q ss_pred             EEEcCCCce---eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          201 VFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       201 vwd~~~~~~---~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |||+++++.   ...+....+...|.+++|+|+|+   +||+++.||+|+||+...
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEETTSCEEEEEECT
T ss_pred             EEEeCCCCCccceeeeecccCCCcEEEEEECCCCC---EEEEEcCCCcEEEEEECC
Confidence            999987531   12222123456799999999999   999999999999999753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-31  Score=237.25  Aligned_cols=276  Identities=12%  Similarity=0.118  Sum_probs=190.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEE----eeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .+|..+|++++|+|+  +|++|+.++ +++||+.++  +.....    +...+..+++.++.+.++..+       .|++
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s-------~D~~   81 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-------FDST   81 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE-------TTSC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe-------CCCc
Confidence            468899999999998  889888877 699999875  333333    234566777777777766655       4999


Q ss_pred             EEEEECCCC-------CEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCC----eeeeeecCCCCCceEEEE
Q 019672           77 LCLFNTTTG-------TALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTL----AILDTIDTVPNLKGLCAF  141 (337)
Q Consensus        77 v~iwd~~~~-------~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~  141 (337)
                      |+|||.+..       +++..+. |...|.+++|+++.  ++.+. |++|++||++..    +.+..+..+.  ..+.++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--~~v~~v  159 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--QDVKHV  159 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--SCEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--CceEEE
Confidence            999998532       3444454 44589999998765  44444 899999999432    3455555443  457788


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccCCc--c-----cccCceEEEEeCCC--CCEEEEEeCCCcEEEEEEcCCC-----
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVMELH--S-----HCEAPLAAIVLSSN--GMYIATASEQGTIIRVFLVSEA-----  207 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~~~--~-----~~~~~i~~~~~s~d--g~~lat~s~dg~~i~vwd~~~~-----  207 (337)
                      .++|++.+|++++  .|++|++||+.+..  .     .|..+|.+++|+|+  +.+|++|+.|++ |+|||+.++     
T Consensus       160 ~~~p~~~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~  236 (330)
T 2hes_X          160 IWHPSEALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EECSSSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSC
T ss_pred             EECCCCCEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcccc
Confidence            8888889999988  59999999987652  2     24589999999998  779999999998 699999764     


Q ss_pred             ---ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccc-cccceeeccccc
Q 019672          208 ---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL-PESVNEVLDPAD  283 (337)
Q Consensus       208 ---~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~  283 (337)
                         ..+..+. +.+...|++++|++++    +|++++.||+|+||++..+....        ..... ......+     
T Consensus       237 ~~~~~~~~~~-~~h~~~v~~v~~s~~~----~l~s~~~dg~v~iw~~~~~~~~~--------~~~~~~~h~~~~v-----  298 (330)
T 2hes_X          237 QEWVCEAILP-DVHKRQVYNVAWGFNG----LIASVGADGVLAVYEEVDGEWKV--------FAKRALCHGVYEI-----  298 (330)
T ss_dssp             EEEEEEEECC-SCCSSCEEEEEECTTS----CEEEEETTSCEEEEEEETTEEEE--------EEEESCTTTTSCE-----
T ss_pred             ceeEEeeecc-cccccceEEEEEcCCC----EEEEEeCCCEEEEEEcCCCceEE--------EeccccccccceE-----
Confidence               2333332 2346679999999765    69999999999999986432100        00000 0000011     


Q ss_pred             ceeeeeccCCCc--ccCEEEEEEeCCcEEEEEEec
Q 019672          284 HHVLRNAFPAGV--KRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       284 ~~~~~~~~~~~~--~~~~l~~~~~dg~~~~~~~~~  316 (337)
                           ..+++.+  +++.|++++.||.+++|+++.
T Consensus       299 -----~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          299 -----NVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             -----EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             -----EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence                 1122233  347899999999999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9e-31  Score=237.91  Aligned_cols=228  Identities=12%  Similarity=0.131  Sum_probs=185.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--------cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      +...|.+++|+|+|.+|++|+.++ +++|++...        ......+...+..+.+.++...++.++.       |++
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-------D~~  177 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-------DGT  177 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-------TSE
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-------CCc
Confidence            456799999999999999999887 599987543        1223333455666777766667666554       999


Q ss_pred             EEEEECCCCCEEEEEEcC-CceeEEEEcC----CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           77 LCLFNTTTGTALRELNFL-TSILAVRLNK----KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~-~~v~~i~~~~----~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      |++||+++++++..+..+ ..|.++.+++    +.++.+. |+.|++||+++++.+..+..+..  .+.+++++|++.++
T Consensus       178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES--DVNSVRYYPSGDAF  255 (354)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CeEEEEEeCCCCEE
Confidence            999999999999888754 5788888865    2455555 89999999999998888876544  57777888888899


Q ss_pred             EEcCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      ++++  .|++|++||+++.+...       ...+.+++|+|+|++|++|+.||+ |+|||+.+++.+..+. + |...|.
T Consensus       256 ~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~-~-h~~~v~  330 (354)
T 2pbi_B          256 ASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILF-G-HENRVS  330 (354)
T ss_dssp             EEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEEC-C-CSSCEE
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEE-C-CCCcEE
Confidence            9988  59999999998765432       147899999999999999999998 6999999999888774 3 466899


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +++|+|||+   +|++|+.||+|+||+
T Consensus       331 ~l~~spdg~---~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGT---AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSS---CEEEEETTSEEEEEC
T ss_pred             EEEECCCCC---EEEEEcCCCCEEecC
Confidence            999999999   999999999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-31  Score=246.08  Aligned_cols=238  Identities=20%  Similarity=0.265  Sum_probs=183.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc------EEEEEee--CCEEEEEEccC----C---CEEEEEeC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR------LCYERAV--GAFSIVEMLYS----S---SLLAIVGA   66 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~------~~~~~~~--~~~~~~~~~~~----~---~~~~~~~~   66 (337)
                      ..+|..+|++++|+|  ++|++|+.++ +++||+.+++      .+.....  ..+..+.+.++    +   +.++.++ 
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~-   88 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS-   88 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE-
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc-
Confidence            457899999999999  7888888876 6999999887      4554443  44556666655    4   4554443 


Q ss_pred             CCCCCCCCceEEEEECCCCCE-----EEEEEcC------CceeEEEEc----CCe---EEEEE-CCeEEEEECCC-----
Q 019672           67 GEQPSLSPRRLCLFNTTTGTA-----LRELNFL------TSILAVRLN----KKR---LVIVL-REKTYIYDANT-----  122 (337)
Q Consensus        67 g~~~~~~d~~v~iwd~~~~~~-----~~~~~~~------~~v~~i~~~----~~~---~~v~~-d~~i~i~d~~~-----  122 (337)
                            .|+.|++||+.+++.     +..+..+      ..|.++.|+    ++.   ++++. |+.|++||+.+     
T Consensus        89 ------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           89 ------FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             ------TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             ------CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence                  489999999998886     6666655      789999999    654   44444 88999999988     


Q ss_pred             -Ceeee-----eecC-----CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------c---cCceEEE
Q 019672          123 -LAILD-----TIDT-----VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------C---EAPLAAI  180 (337)
Q Consensus       123 -~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~---~~~i~~~  180 (337)
                       ++.+.     .+..     ..+...+.++.++|++ ++++++  .||.|++||+.+.+..        |   ..+|.++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence             55554     5532     2233456677788888 888887  5999999999876542        4   6789999


Q ss_pred             EeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEeeccCC-----------cceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          181 VLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       181 ~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      +|+|++++|++++.|   |. |++||+++++.+..+....           +...|.+++|+|+++   +|++++.||+|
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i  315 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKL  315 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEE
T ss_pred             EECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---EEEEEeCCCeE
Confidence            999999999999999   87 6999999999888875310           456799999999999   99999999999


Q ss_pred             EEEecCCCcc
Q 019672          247 HVFSPGFAIN  256 (337)
Q Consensus       247 ~iw~l~~~~~  256 (337)
                      +|||+.+.+.
T Consensus       316 ~iwd~~~~~~  325 (397)
T 1sq9_A          316 RFWDVKTKER  325 (397)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEEcCCCce
Confidence            9999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.4e-31  Score=252.44  Aligned_cols=268  Identities=14%  Similarity=0.173  Sum_probs=201.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .++..+|++++|+|++++|++++.++ +++||..+.++.. ..+...+..+.+.++...++..+       .|+.|++||
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~dg~v~~~~  372 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS-------DDKTVKLWN  372 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe-------CCCEEEEEc
Confidence            45788999999999999999998877 6999987654322 22234556666666677766554       489999999


Q ss_pred             CCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           82 TTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      . +++.+..+. +..+|.+++++++.  ++++. |+.|++||. +++.+..+..+.  ..+.+++++|++.++++++  .
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~--~  446 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVWGVAFSPDDQTIASAS--D  446 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS--SCEEEEEECTTSSEEEEEE--T
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC--CCeEEEEECCCCCEEEEEc--C
Confidence            5 566777665 45589999998764  44444 889999996 456667776544  4577788888999999988  5


Q ss_pred             ccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          158 KGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       158 dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      |+.|++||......    .|..+|++++|+|||++||+++.|++ |+|||. +++.+.++..  |...|++|+|+|||+ 
T Consensus       447 d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg~-  521 (577)
T 2ymu_A          447 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQ-  521 (577)
T ss_dssp             TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTTSS-
T ss_pred             CCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeC--CCCCEEEEEEcCCCC-
Confidence            99999999754322    24489999999999999999999997 699995 6788888753  456799999999999 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        +||+++.||+|+|||+... ...           .+......+          ..+.+.+++++|++++.||.+++|+
T Consensus       522 --~l~s~~~dg~v~lwd~~~~-~~~-----------~~~~h~~~v----------~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          522 --TIASASDDKTVKLWNRNGQ-LLQ-----------TLTGHSSSV----------WGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             --CEEEEETTSEEEEECTTSC-EEE-----------EEECCSSCE----------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --EEEEEECcCEEEEEeCCCC-EEE-----------EEcCCCCCE----------EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence              9999999999999996321 100           111111112          2334467779999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-31  Score=243.73  Aligned_cols=288  Identities=11%  Similarity=0.118  Sum_probs=211.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +..+|++++|+|++++|++|+.++ +++|| .+++.+.....  ..+..+.+.++.+.++.++.       |+.|++||+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~  178 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-------ENVTILWNV  178 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-------TCCEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec-------CCeEEEEEC
Confidence            567999999999999999998887 69999 55666555543  45666677767777766553       899999999


Q ss_pred             CCCCEEEEEEcCC-c---------------eeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672           83 TTGTALRELNFLT-S---------------ILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        83 ~~~~~~~~~~~~~-~---------------v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      .+++.+..+..+. .               +.++.++++..+++.  ++.|++||+++++.+..+..+.  ..+.+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~  256 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFN  256 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEE
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEEC
Confidence            9999888876554 2               888888777665555  8899999999988877776544  356677777


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  219 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~  219 (337)
                      |++.++++++  .||.|++||+.+.+..     +..+|.+++|+|++ +|++++.||. |++||+++++.+..+..  +.
T Consensus       257 ~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~  330 (425)
T 1r5m_A          257 DTNKLLLSAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--DG  330 (425)
T ss_dssp             TTTTEEEEEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--TT
T ss_pred             CCCCEEEEEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--CC
Confidence            8888999887  5899999999887643     34889999999999 9999999997 69999999998887753  35


Q ss_pred             eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCc--ccccccccccccceeeccccccee--eeeccCCCc
Q 019672          220 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR--TSSILGSILPESVNEVLDPADHHV--LRNAFPAGV  295 (337)
Q Consensus       220 ~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~  295 (337)
                      ..|.+++|+|+++   +|++++.||.|+|||+...........  ....+.   +.....+.....+..  .+..+.+.+
T Consensus       331 ~~i~~~~~s~~~~---~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          331 VPIFAGRISQDGQ---KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN---PLPIPLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             CCEEEEEECTTSS---EEEEEETTSCEEEEECHHHHC-----------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred             ccEEEEEEcCCCC---EEEEEECCCeEEEEECCCCccceeeeecccccccC---cccchhhhhhcCcccCCceEEEEccC
Confidence            5799999999999   999999999999999976542211000  000000   000000111111111  234445567


Q ss_pred             ccCEEEEEEeCCcEEEEEEe
Q 019672          296 KRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       296 ~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ++++|++++.||.+++|+++
T Consensus       405 ~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          405 AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TSSEEEEEESSSCCEEEECC
T ss_pred             CCceEEEEecCceEEEEeec
Confidence            77899999999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-30  Score=240.20  Aligned_cols=230  Identities=12%  Similarity=0.170  Sum_probs=185.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .|++++|+|||++|++|+.++ ++|||+++++.+.....  ..+..+.+.++.+.++..+       .|++|++||++++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-------~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-------GDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec-------CCCcEEEEECCCC
Confidence            499999999999999999887 69999999988766544  3466666666677766554       4999999999999


Q ss_pred             CEEEEEEcCCceeEEEEcC-C--eEEEEE-CCeEEEEECCCCeeeeeecC-----CCCCceEEEEeeCCCccEEEEcCCC
Q 019672           86 TALRELNFLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDT-----VPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      ++...+.+...+.++.+++ +  .++++. |+.|++||+++++.+..+..     ..+...+.+++++|++.++++++  
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--  275 (393)
T 1erj_A          198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--  275 (393)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--
T ss_pred             eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--
Confidence            9998888888999999986 3  344444 89999999999887766632     12345678888889999999988  


Q ss_pred             CccEEEEEEccCCcc-----------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc
Q 019672          157 TKGSVLVYNVMELHS-----------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  219 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~-----------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~  219 (337)
                      .||.|++||+.+...                 .|...|.+++|+|++++|++|+.||+ |++||+.+++.+..+. + |.
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~-~-h~  352 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ-G-HR  352 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE-C-CS
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC-C-CC
Confidence            599999999976421                 13477999999999999999999997 6999999999988875 3 45


Q ss_pred             eeEEEEEeec------CCCcccEEEEEeCCCcEEEEecCC
Q 019672          220 STIFSLSFGQ------SMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       220 ~~i~~l~fs~------dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ..|.+++|+|      +++   +|++|+.||+|+||+++.
T Consensus       353 ~~v~~v~~~~~~~~~p~~~---~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          353 NSVISVAVANGSSLGPEYN---VFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCEEEEEECSSCTTCTTCE---EEEEEETTSEEEEEEEEE
T ss_pred             CCEEEEEecCCcCcCCCCC---EEEEECCCCcEEECcccc
Confidence            6799999886      677   999999999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-32  Score=252.20  Aligned_cols=240  Identities=15%  Similarity=0.258  Sum_probs=182.8

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCC---Cc---EEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST---GR---LCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~---~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ..|.++|++++|+| ++++|++|+.++ ++|||+.+   +.   .... .+...+..+++.++.+.++.++       .|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~d  132 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-------KD  132 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe-------CC
Confidence            46789999999999 999999999887 59999866   32   2222 2345677777777677766655       49


Q ss_pred             ceEEEEECC---CCCEEEEEE-------------cCCceeEEE--EcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCC
Q 019672           75 RRLCLFNTT---TGTALRELN-------------FLTSILAVR--LNKK--RLVIVL-REKTYIYDANTLAILDTIDTVP  133 (337)
Q Consensus        75 ~~v~iwd~~---~~~~~~~~~-------------~~~~v~~i~--~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~  133 (337)
                      ++|++||++   +++.+....             ....+.++.  ++++  .++++. |+.|++||+++++.+..+..+.
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999994   565554332             233455555  2333  344444 8999999999999988887643


Q ss_pred             CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEE----eCCCCCEEEEEeCCCcEEEEEE
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIV----LSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~----~s~dg~~lat~s~dg~~i~vwd  203 (337)
                      +...+.+++++|++.++++++  .||.|++||+++++...      ..+|.+++    |+|++.+|++|+.||+ |+|||
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd  289 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN  289 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence            445788888889999999988  59999999999876543      36899994    4567889999999997 69999


Q ss_pred             cCCCceeEeeccCC------------------------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          204 VSEATKSYSFRRGT------------------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       204 ~~~~~~~~~~~~~~------------------------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      +.+++.+..+..+.                        +...|.+++|+ +++   +|++|+.||+|++||+.+++..
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~---~l~s~~~d~~i~~wd~~~~~~~  363 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK---ILLTDEATSSIVMFSLNELSSS  363 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE---EEEEEGGGTEEEEEETTCGGGC
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce---EEEecCCCCeEEEEECCCcccc
Confidence            99999887775221                        34458999999 777   9999999999999999876643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.6e-31  Score=238.01  Aligned_cols=299  Identities=11%  Similarity=0.176  Sum_probs=205.0

Q ss_pred             CCCCCCeEEEEEcCCCCEE-EEEcC---Cc-eEEEeCCCCcEEEE---EeeCCEEEEEEccC---CCEEEEEeCCCCCCC
Q 019672            4 QSSSYPVFFVSFNQDNSGF-ALSTK---DG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYS---SSLLAIVGAGEQPSL   72 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~l-a~g~~---~g-~~vw~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~   72 (337)
                      .+|..+|++++|+|++..+ ++|+.   ++ +++||+.+++....   .+...+..+.+.++   .+.++..+       
T Consensus        15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-------   87 (357)
T 3i2n_A           15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD-------   87 (357)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE-------
T ss_pred             cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec-------
Confidence            3588899999999999765 56654   55 69999998876432   22345666666655   35555444       


Q ss_pred             CCceEEEEECCCCC-EEEEEE-cCCceeEEEE------cCC--eEEEEE-CCeEEEEECCCCe-eeeeecCCCC--CceE
Q 019672           73 SPRRLCLFNTTTGT-ALRELN-FLTSILAVRL------NKK--RLVIVL-REKTYIYDANTLA-ILDTIDTVPN--LKGL  138 (337)
Q Consensus        73 ~d~~v~iwd~~~~~-~~~~~~-~~~~v~~i~~------~~~--~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~--~~~~  138 (337)
                      .|+.|++||+.+++ ++..+. +...|.++.+      +++  .++++. |+.|++||+++++ .+..+..+..  ...+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            48999999999887 777765 4457999865      333  455555 8899999998876 5666654332  2245


Q ss_pred             EEEe----eCCCccEEEEcCCCCccEEEEEEccCCccc----ccCceEEEEeCC---CCCEEEEEeCCCcEEEEEEcCCC
Q 019672          139 CAFS----PSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPLAAIVLSS---NGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       139 ~~~~----~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~---dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      .++.    +++++.++++++  .||.|++||+++++..    +..+|.+++|+|   ++++|++++.||. |++||++++
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~  244 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQ  244 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCC
Confidence            5555    567888999887  5899999999987754    348999999999   9999999999997 699999887


Q ss_pred             ceeEeec---cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccc
Q 019672          208 TKSYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  284 (337)
Q Consensus       208 ~~~~~~~---~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  284 (337)
                      +.+..+.   ...+...|++++|+|+++  .+|++++.||.|+|||++...............+ . +.....+.....+
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~  320 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNR--ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-V-AGSVSLLQNVTLS  320 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEE--EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-C-CCEEEEEEEEECC
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCC--cEEEEEeCCCcEEEeecCCCcccccccCCCCccc-c-ccccceeeccccC
Confidence            6654442   112456799999999986  3699999999999999987654321111000000 0 0000111111112


Q ss_pred             eeeeeccCCCcccCEEE-EEEeCCcEEEEEEec
Q 019672          285 HVLRNAFPAGVKRASVS-VITYNGYFVEYIFSI  316 (337)
Q Consensus       285 ~~~~~~~~~~~~~~~l~-~~~~dg~~~~~~~~~  316 (337)
                      ...+..+.+.++++.|+ +++.||.+++|++..
T Consensus       321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            22233445566778888 799999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=250.12  Aligned_cols=298  Identities=9%  Similarity=0.057  Sum_probs=211.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCC----CcEEEEEee--CCEEEEEEccC-CCEEEEEeCCCCCCCCCce
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST----GRLCYERAV--GAFSIVEMLYS-SSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~----~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~   76 (337)
                      .+..+|++++|+|++++|++|+.++ +++||+.+    .+.+.....  ..+..+.+.++ .+.++..+       .|++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~dg~  137 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG-------NNGE  137 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC-------SSSC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc-------CCCe
Confidence            4678899999999999999998876 69999987    345544433  44556666665 55555443       4899


Q ss_pred             EEEEECCCCC------EEEEE----EcCCceeEEEEcCC--eEEE-EE-CCeEEEEECCCCeeeeeecCCCC----CceE
Q 019672           77 LCLFNTTTGT------ALREL----NFLTSILAVRLNKK--RLVI-VL-REKTYIYDANTLAILDTIDTVPN----LKGL  138 (337)
Q Consensus        77 v~iwd~~~~~------~~~~~----~~~~~v~~i~~~~~--~~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~----~~~~  138 (337)
                      |++||+.+++      ....+    .+...|.++.|+++  .+++ +. |+.|++||+++++.+..+..+..    ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999999886      33322    34568999999876  3333 33 88999999999988888765421    3457


Q ss_pred             EEEeeCCCc-cEEEEcCCCCcc---EEEEEEccCCcc-------cccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCC
Q 019672          139 CAFSPSLNA-CFLAVPASTTKG---SVLVYNVMELHS-------HCEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       139 ~~~~~~~~~-~~la~~~~~~dg---~v~i~d~~~~~~-------~~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      .+++++|++ .++++++  .++   .|++||+++...       .|..+|.+++|+| ++++|++++.||+ |++||+++
T Consensus       218 ~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~  294 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES  294 (416)
T ss_dssp             EEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred             EEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence            777888876 5777776  477   999999987531       2458899999999 9999999999997 69999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCC-CcccEEEEEeCCCcEEEEecCCCcccCCCCc--------cccccc--c---ccc
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSM-QFQDILVATSSSGSLHVFSPGFAINQRRGGR--------TSSILG--S---ILP  272 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg-~~~~~las~s~dg~v~iw~l~~~~~~~~~~~--------~~~~~~--~---~~~  272 (337)
                      ++.+.++..  +...|.+++|+|++ .   +|++++.||+|+||++...........        ...++.  .   ..+
T Consensus       295 ~~~~~~~~~--~~~~v~~~~~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (416)
T 2pm9_A          295 AEQLSQFPA--RGNWCFKTKFAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE  369 (416)
T ss_dssp             CCEEEEEEC--SSSCCCCEEECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred             CccceeecC--CCCceEEEEECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence            999888853  35679999999999 7   999999999999999987654332110        000000  0   000


Q ss_pred             ccceeeccc-ccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          273 ESVNEVLDP-ADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       273 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ....-.|.. ..+...+..+.++++++.|++++.||.|++|++.++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            000001100 001112234456778899999999999999998765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8e-31  Score=239.86  Aligned_cols=274  Identities=8%  Similarity=-0.007  Sum_probs=194.5

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcEEEEEe----eCCEEEEEEcc-CCCEEEEEeCCCCCCCCCce
Q 019672            4 QSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYERA----VGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .++..+|++++|+|++ ++|++|+.++ ++|||+.+++......    ...+..+++.+ +.+.++.++       .|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-------IRGA  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-------TTTE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-------CCCE
Confidence            4678999999999999 8999998877 6999999887665543    23445555544 234444433       4999


Q ss_pred             EEEEECCCCCEEEEEEc-C---CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-
Q 019672           77 LCLFNTTTGTALRELNF-L---TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-  148 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~-~---~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (337)
                      |++||+++ +.+..+.. .   ..|.+++++++.  ++++. |+.|++||+ +++.+..+..+.  ..+.+++++|++. 
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~--~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK--AKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--SCEEEEEECSSCTT
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--CcEEEEEECCCCCC
Confidence            99999986 44554432 2   469999998754  44444 889999999 466777776544  4577788888887 


Q ss_pred             EEEEcCCCCccEEEEEEccCC----ccc----ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc-
Q 019672          149 FLAVPASTTKGSVLVYNVMEL----HSH----CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-  218 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~----~~~----~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~-  218 (337)
                      ++++++  .|+.|++||+.+.    ...    +..+|.+++|+| +|++|++++.||. |++||+++++.+..+..... 
T Consensus       219 ~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~  295 (383)
T 3ei3_B          219 LMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR  295 (383)
T ss_dssp             EEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred             EEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence            788877  5999999999873    222    348999999999 9999999999997 69999999887665542110 


Q ss_pred             --------------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccc
Q 019672          219 --------------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  284 (337)
Q Consensus       219 --------------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  284 (337)
                                    ...+..++|+|||+   +  +++.||+|+|||+.+++.....      .+......          
T Consensus       296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~---~--s~s~d~~i~iwd~~~~~~~~~l------~~~~~~~~----------  354 (383)
T 3ei3_B          296 QFQHLTPIKATWHPMYDLIVAGRYPDDQ---L--LLNDKRTIDIYDANSGGLVHQL------RDPNAAGI----------  354 (383)
T ss_dssp             CCTTSCCCCCEECSSSSEEEEECBCCTT---T--CTTCCCCEEEEETTTCCEEEEE------CBTTBCSC----------
T ss_pred             ccccccceEEeccCCCCceEEEecCCcc---c--ccCCCCeEEEEecCCCceeeee------cCCCCCce----------
Confidence                          12355688888888   5  8899999999999876542210      00000001          


Q ss_pred             eeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          285 HVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       285 ~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                         ...+.+.++++.|++++ ||.+++|+++.
T Consensus       355 ---~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          355 ---ISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ---CCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ---EEEEEEecCccEEEEec-CCcEEEEecCC
Confidence               11122345557888885 99999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-30  Score=255.96  Aligned_cols=293  Identities=11%  Similarity=0.082  Sum_probs=203.3

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCc-----EEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            4 QSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGR-----LCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ..|...|++++|+|++ ++|++|+.|+ +++|++.+..     .....  +.+.+..+.+.++++.++..+       .|
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs-------~D  451 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS-------WD  451 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe-------CC
Confidence            4789999999999875 6889998877 6999987642     22223  334566677777777766554       49


Q ss_pred             ceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecC-CCCCceEEEEeeCCCc--
Q 019672           75 RRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNA--  147 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  147 (337)
                      ++|+|||+.+++.+..+.. ...|.++.|+++.  ++.++ |++|++||+........... ..+...+.++.++|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            9999999999998888764 4589999998764  45555 89999999865543322211 1233446666666654  


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  222 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i  222 (337)
                      ..+++++  .|+.|++||+.+.+..     |...|++++|+|+|++|++|+.||+ |+|||+.+++.+..+..   ...|
T Consensus       532 ~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~---~~~v  605 (694)
T 3dm0_A          532 PTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEA---NSVI  605 (694)
T ss_dssp             CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBC---SSCE
T ss_pred             ceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecC---CCcE
Confidence            5788877  5999999999887653     4588999999999999999999998 69999999998877743   3469


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEE
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  302 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~  302 (337)
                      .+++|+|++.   +|++++ ++.|+|||+++.................. .... .-...........+.+.+++++|++
T Consensus       606 ~~~~~sp~~~---~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          606 HALCFSPNRY---WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA-DNSG-PAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             EEEEECSSSS---EEEEEE-TTEEEEEETTTTEEEEEECCCCC------------------CCCCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCc---EEEEEc-CCCEEEEECCCCCChhhhccccccccccc-cccc-cccCCceeEEeeeEEEcCCCCEEEE
Confidence            9999999998   776665 56699999987643221000000000000 0000 0000000011234456778899999


Q ss_pred             EEeCCcEEEEEEe
Q 019672          303 ITYNGYFVEYIFS  315 (337)
Q Consensus       303 ~~~dg~~~~~~~~  315 (337)
                      ++.||.|++|++.
T Consensus       680 gs~Dg~i~iW~i~  692 (694)
T 3dm0_A          680 GYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTSEEEEEEC-
T ss_pred             EcCCCeEEEEecc
Confidence            9999999999874

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-30  Score=229.88  Aligned_cols=240  Identities=10%  Similarity=0.096  Sum_probs=184.3

Q ss_pred             EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCC--eEEEEE-CCeEE
Q 019672           41 CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKK--RLVIVL-REKTY  116 (337)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~--~~~v~~-d~~i~  116 (337)
                      .+..+...+..+++.++.+.++..+.       |++|++||+++++.+..+..+ .+|.++.|+++  .++++. |+.|+
T Consensus         8 ~~~~h~~~V~~~~fsp~~~~l~s~~~-------dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLY-------SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEcC-------CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            34445567788888888887766554       999999999999998888755 47999999765  455555 88999


Q ss_pred             EEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------cccCceEEEEeCC-CCCEE
Q 019672          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEAPLAAIVLSS-NGMYI  189 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------~~~~~i~~~~~s~-dg~~l  189 (337)
                      +||+.+++.+..+..+..  .+.+++++|++.++++++  .||+|++||+.+...      .|..+|.+++|+| ++.+|
T Consensus        81 vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPD--YIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEETTTCCEEEEEECCSS--CEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred             EEECCCCcEEEEEeCCCC--cEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE
Confidence            999999998888876544  577788888889999988  599999999987632      2458899999999 68899


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec--CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccc
Q 019672          190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ--SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL  267 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~--dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~  267 (337)
                      |+|+.||+ |++||+.+++....+..+ +...+..++|+|  +++   +|++|+.|++|+|||+++......        
T Consensus       157 ~sgs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~---~l~s~s~D~~i~iWd~~~~~~~~~--------  223 (304)
T 2ynn_A          157 ASGCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKP---YMITASDDLTIKIWDYQTKSCVAT--------  223 (304)
T ss_dssp             EEEETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCC---EEEEEETTSEEEEEETTTTEEEEE--------
T ss_pred             EEEeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCC---EEEEEcCCCeEEEEeCCCCcccee--------
Confidence            99999998 699999988776666443 345688888886  777   999999999999999976543211        


Q ss_pred             cccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          268 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       268 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                         +..          +...+..+.+.++++.|++++.||.+++|++.+.
T Consensus       224 ---~~~----------h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          224 ---LEG----------HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             ---EEC----------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             ---eCC----------CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence               000          1111122334556689999999999999987543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.9e-30  Score=234.24  Aligned_cols=232  Identities=13%  Similarity=0.099  Sum_probs=183.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+..+|++++|+|++++|++|+.++ +++||+++++  .+.....  ..+..+.+.++.+.++..+.       |+.|++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-------dg~i~v   78 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-------DRNAYV   78 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-------CCeEEE
Confidence            4778999999999999999997766 6999999886  5555433  45666777777777776554       899999


Q ss_pred             EECCCCCEEEEEE---cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeCCCccEE
Q 019672           80 FNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        80 wd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      ||+++++......   +...|.++.|+++.  ++++. ++.|++||+...+.   ...+. ..+...+.++.++|++.++
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEE
Confidence            9999887655543   45689999998764  44444 88999999987652   23332 2334567888888889999


Q ss_pred             EEcCCCCccEEEEEEcc------------------CCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          151 AVPASTTKGSVLVYNVM------------------ELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~------------------~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      ++++  .||.|++||+.                  .++..     +..+|.+++|+|+|++|++++.||. |++||++++
T Consensus       158 ~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~  234 (372)
T 1k8k_C          158 AAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK  234 (372)
T ss_dssp             EEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT
T ss_pred             EEEc--CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            9887  58999999964                  33322     3378999999999999999999997 699999999


Q ss_pred             ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +.+..+..  +...|.+++|+|+++   +|++| .|+.|++|++..
T Consensus       235 ~~~~~~~~--~~~~v~~~~~~~~~~---~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          235 MAVATLAS--ETLPLLAVTFITESS---LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TEEEEEEC--SSCCEEEEEEEETTE---EEEEE-TTSSCEEEEEET
T ss_pred             ceeEEEcc--CCCCeEEEEEecCCC---EEEEE-eCCeEEEEEccC
Confidence            99888863  355799999999998   78777 899999999976

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.4e-30  Score=235.53  Aligned_cols=237  Identities=12%  Similarity=0.135  Sum_probs=184.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEE---------------eeCCEEEEEEcc-CCCEEEEEe
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYER---------------AVGAFSIVEMLY-SSSLLAIVG   65 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~---------------~~~~~~~~~~~~-~~~~~~~~~   65 (337)
                      ..|..+|++++|+| ++++|++|+.++ +++||+.+++.....               +...+..+.+.+ +.+.++.++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            46889999999999 999999999887 699999887542211               334566666666 445555544


Q ss_pred             CCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCC-----eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        66 ~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~-----~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                             .|+.|++||+.+++.+..+.+...+.++.+.+.     .++++. ++.|++||+++++.+..+..+..  .+.
T Consensus       120 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~v~  190 (408)
T 4a11_B          120 -------FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ--EIL  190 (408)
T ss_dssp             -------TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS--CEE
T ss_pred             -------CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC--cEE
Confidence                   489999999999999999998889999998753     344444 88999999999988888765443  577


Q ss_pred             EEeeCCCcc-EEEEcCCCCccEEEEEEccCCc---------------------ccccCceEEEEeCCCCCEEEEEeCCCc
Q 019672          140 AFSPSLNAC-FLAVPASTTKGSVLVYNVMELH---------------------SHCEAPLAAIVLSSNGMYIATASEQGT  197 (337)
Q Consensus       140 ~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~---------------------~~~~~~i~~~~~s~dg~~lat~s~dg~  197 (337)
                      +++++|++. ++++++  .||.|++||+++..                     ..+..+|.+++|+|+|++|++++.||.
T Consensus       191 ~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          191 AVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            777888877 477776  59999999997654                     234488999999999999999999998


Q ss_pred             EEEEEEcCCCcee-----------------------------------------------EeeccCCcceeEEEEEeecC
Q 019672          198 IIRVFLVSEATKS-----------------------------------------------YSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       198 ~i~vwd~~~~~~~-----------------------------------------------~~~~~~~~~~~i~~l~fs~d  230 (337)
                       |++||+.+++..                                               ..+.  .+...|.+++|+|+
T Consensus       269 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~  345 (408)
T 4a11_B          269 -MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSN  345 (408)
T ss_dssp             -EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETT
T ss_pred             -EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCC
Confidence             689999876532                                               2221  23567999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      ++   +|++++.||.|+|||+++.+..
T Consensus       346 ~~---~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          346 FQ---ELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             TT---EEEEEETTSCEEEEEECC----
T ss_pred             CC---EEEEECCCCeEEEEeCCCCCcc
Confidence            99   9999999999999999876543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.5e-31  Score=251.44  Aligned_cols=294  Identities=11%  Similarity=0.040  Sum_probs=195.0

Q ss_pred             CCCeEEEEEcCCC---------CEEEEEc-------------------CCc-eEEEeCCCCcEE----E--EEeeCCEEE
Q 019672            7 SYPVFFVSFNQDN---------SGFALST-------------------KDG-FKIFDSSTGRLC----Y--ERAVGAFSI   51 (337)
Q Consensus         7 ~~~v~~~~fs~dg---------~~la~g~-------------------~~g-~~vw~~~~~~~~----~--~~~~~~~~~   51 (337)
                      .++|++++|+|++         ++||+|+                   .++ ++|||+++++..    .  ..+.+.+..
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~  212 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD  212 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence            4677888888776         5666654                   444 699999877642    2  222345666


Q ss_pred             EEEccC------CCEEEEEeCCCCCCCCCceEEEEECCCCCE-----------EEEEE-cCCceeEEEEcCCeEEE-EE-
Q 019672           52 VEMLYS------SSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-----------LRELN-FLTSILAVRLNKKRLVI-VL-  111 (337)
Q Consensus        52 ~~~~~~------~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~-----------~~~~~-~~~~v~~i~~~~~~~~v-~~-  111 (337)
                      +++.+.      ...++.++       .|++|+|||+.+++.           ...+. +...|.+++|+++..++ +. 
T Consensus       213 v~wsp~~~~~~~~~~LAs~s-------~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~  285 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVS-------QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK  285 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEE-------TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred             EEECCCCCCCCCCceEEEEe-------cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence            676664      24555444       499999999987642           12343 34589999997655444 44 


Q ss_pred             CCeEEEEECCCCe-eeeeecCCCCCceEEEE--eeCCCc-cEEEEcCCCCccEEEEEEccCCcccc-----c--CceEEE
Q 019672          112 REKTYIYDANTLA-ILDTIDTVPNLKGLCAF--SPSLNA-CFLAVPASTTKGSVLVYNVMELHSHC-----E--APLAAI  180 (337)
Q Consensus       112 d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~-----~--~~i~~~  180 (337)
                      |++|++||+++++ +...+..+..  .+.++  .+++++ .+||+++  .|++|+|||+++++...     .  ..|.++
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~--~V~sv~~~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDS--YILSVSTAYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSS--CEEEEEEECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             CCEEEEEECCCCCCceEEeecccc--cEEEEEEEcCCCCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccce
Confidence            8999999998763 3344555544  45555  556666 7889888  59999999998866432     2  358899


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCC
Q 019672          181 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG  260 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~  260 (337)
                      +|+|+++.||+++.|++ |++||+++++.+..+..  |...|++|+|||+|+   +|++|+.||+|+|||+....-. ..
T Consensus       362 ~fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~---~l~Sgs~Dgtv~lwd~~~~~~~-~~  434 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHP---MVLAGSADGSLIITNAARRLLH-GI  434 (524)
T ss_dssp             EEETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCC---BCEEEETTTEEECCBSCSSTTT-CC
T ss_pred             EeCCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCC---eEEEEECCCEEEEEechHhhcc-cc
Confidence            99999999999999997 69999999988777753  466899999999999   9999999999999998643211 10


Q ss_pred             Cccc-------cccccccccc-cee------ec--c--------cccceeeeeccCCCccc---CEEEEEEeCCcEEEEE
Q 019672          261 GRTS-------SILGSILPES-VNE------VL--D--------PADHHVLRNAFPAGVKR---ASVSVITYNGYFVEYI  313 (337)
Q Consensus       261 ~~~~-------~~~~~~~~~~-~~~------~w--~--------~~~~~~~~~~~~~~~~~---~~l~~~~~dg~~~~~~  313 (337)
                      ....       .+--.+.|+. ...      +|  +        ...+...+..+++.|++   ..+++|+.||.|++|+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            0000       0011112211 001      11  1        01111223455566664   4889999999999999


Q ss_pred             EecCC
Q 019672          314 FSINN  318 (337)
Q Consensus       314 ~~~~~  318 (337)
                      ++-+.
T Consensus       515 l~~~~  519 (524)
T 2j04_B          515 LSLEH  519 (524)
T ss_dssp             CSCC-
T ss_pred             ccccc
Confidence            98764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=4.5e-31  Score=242.07  Aligned_cols=236  Identities=13%  Similarity=0.139  Sum_probs=178.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-------EE--EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-------LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      .+...|++++|+|+|++|++|+.++ +++||+.+..       ..  +..+.+.+..+.+.++.+..++.++      .|
T Consensus       106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s------~D  179 (380)
T 3iz6_a          106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS------GD  179 (380)
T ss_dssp             CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC------TT
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC------CC
Confidence            4677899999999999999999887 5999986532       11  1122222333333333333233333      49


Q ss_pred             ceEEEEECCCCCEEEEEE------cCCceeEEEEcC---CeEEEEE-CCeEEEEECCC-CeeeeeecCCCCCceEEEEee
Q 019672           75 RRLCLFNTTTGTALRELN------FLTSILAVRLNK---KRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~------~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  143 (337)
                      ++|++||+++++.+..+.      +...|.++.+++   +.++.+. |++|++||++. .+.+..+..+..  .+.++++
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~--~v~~v~~  257 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG--DINSVKF  257 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS--CCCEEEE
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC--CeEEEEE
Confidence            999999999999887762      345799999854   3455555 89999999974 456666665544  4667777


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCccccc------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCE------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      +|++.++++++  .||+|++||+++++....            ..|++++|+|+|++|++|+.||. |++||+.+++.+.
T Consensus       258 ~p~~~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~~  334 (380)
T 3iz6_a          258 FPDGQRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMVL  334 (380)
T ss_dssp             CTTSSEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEEE
T ss_pred             ecCCCeEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceEE
Confidence            88888999988  599999999998765321            24899999999999999999998 6999999998877


Q ss_pred             eecc--CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          212 SFRR--GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       212 ~~~~--~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .+..  ..|...|.+++|+|||+   +|++||.|++|+||++...
T Consensus       335 ~~~~~~~~h~~~v~~l~~s~dg~---~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          335 NLGTLQNSHEGRISCLGLSSDGS---ALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECCSCSSCCCCCCEEEECSSSS---EEEEECTTSCEEEEECCSS
T ss_pred             EEecccCCCCCceEEEEECCCCC---EEEEeeCCCCEEEEecCCC
Confidence            6632  23466799999999999   9999999999999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=4.4e-30  Score=237.35  Aligned_cols=280  Identities=14%  Similarity=0.147  Sum_probs=202.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .+....|+|++++|++|+.++ +++||+.+++.....  +...+..+++.++.+.++.++       .|++|++||++++
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-------~d~~i~iwd~~~~  171 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS-------QDMQLKIWSVKDG  171 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTC
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe-------CCCeEEEEeCCCC
Confidence            344557899999999998877 699999988876654  335566677776767666554       4899999999999


Q ss_pred             CEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCC-CceE---------------------E
Q 019672           86 TALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPN-LKGL---------------------C  139 (337)
Q Consensus        86 ~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~---------------------~  139 (337)
                      +.+..+. +...|.+++|+++.  ++.+. |+.|++||+++++.+..+..+.. ...+                     .
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            9888887 45689999998764  55455 88999999999998888764321 1122                     2


Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCce-eE
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATK-SY  211 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~~-~~  211 (337)
                      +++++|++.++++++  .||.|++||+.+++..      +..+|.+++|+|+|+ +|++|+.||. |++||+++++. +.
T Consensus       252 ~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGH--VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG  328 (420)
T ss_dssp             TTCSSCTTEEEEEEE--TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred             ceEEcCCCCEEEEEc--CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence            234467888999887  5999999999887643      337899999999999 9999999997 69999999865 55


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeecc
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF  291 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  291 (337)
                      .+. +++...|.++.| |+++   +|++++.||+|+||++.....+........  ...+..          +...+..+
T Consensus       329 ~~~-~~~~~~v~~~~~-~~~~---~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~--~~~~~~----------~~~~v~~~  391 (420)
T 3vl1_A          329 EFL-INEGTPINNVYF-AAGA---LFVSSGFDTSIKLDIISDPESERPAIEFET--PTFLVS----------NDDAVSQF  391 (420)
T ss_dssp             EEE-ESTTSCEEEEEE-ETTE---EEEEETTTEEEEEEEECCTTCCSCEECTTS--CEEECC----------SSCCCCEE
T ss_pred             hhh-ccCCCCceEEEe-CCCC---EEEEecCCccEEEEeccCCCCCccceeccC--ccEEcc----------CCcceEEE
Confidence            564 334567888855 5777   999999999999999987544332100000  000000          00011112


Q ss_pred             CCCcccC---EEEEEEeCCcEEEEEEe
Q 019672          292 PAGVKRA---SVSVITYNGYFVEYIFS  315 (337)
Q Consensus       292 ~~~~~~~---~l~~~~~dg~~~~~~~~  315 (337)
                      .+.+++.   +|++.+.+|.+.+|+++
T Consensus       392 ~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          392 CYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             EEccCCCCcceEEEEcCCceEEEEecc
Confidence            2233445   89999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-29  Score=222.71  Aligned_cols=274  Identities=8%  Similarity=0.068  Sum_probs=203.4

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+|..+|++++| |++++|++|+.++ +++||+.+++......  ...+..+.+.++.+.++..+.       |+.|++
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~~   85 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-------DTMING   85 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-------TSCEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-------CCeEEE
Confidence            3578899999999 9999999999887 6999998887655443  355677777777777766654       899999


Q ss_pred             EECCCC---CEEEEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC-CccEEEEc
Q 019672           80 FNTTTG---TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACFLAVP  153 (337)
Q Consensus        80 wd~~~~---~~~~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~  153 (337)
                      |++...   +.+..+. +...|.++.++++.++++. |+.|++||  .++.+..+..+..+  +.++...+ ++.+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNAS--VWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSC--EEEEEEEETTTTEEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCc--eeEEEEccCCCCEEEEE
Confidence            998654   4455554 4558999999888888777 88999999  55666666655443  44444433 56688887


Q ss_pred             CCCCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          154 ASTTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                      +  .||.|++||.......    +..+|.+++|+|++. +++++.||. |++||+++++.+..+..  +...|.+++|+|
T Consensus       162 ~--~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~  235 (313)
T 3odt_A          162 S--ADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVYCIKLLP  235 (313)
T ss_dssp             E--TTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEEECT
T ss_pred             E--CCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEEEEEEec
Confidence            7  5899999995443221    448899999999998 999999997 69999999999888853  356799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcE
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYF  309 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~  309 (337)
                      ++.    |++++.||+|++||+.+.+....       +    ......+          ..+.+.+++. +++++.||.+
T Consensus       236 ~~~----l~~~~~dg~v~iwd~~~~~~~~~-------~----~~~~~~i----------~~~~~~~~~~-~~~~~~dg~i  289 (313)
T 3odt_A          236 NGD----IVSCGEDRTVRIWSKENGSLKQV-------I----TLPAISI----------WSVDCMSNGD-IIVGSSDNLV  289 (313)
T ss_dssp             TSC----EEEEETTSEEEEECTTTCCEEEE-------E----ECSSSCE----------EEEEECTTSC-EEEEETTSCE
T ss_pred             CCC----EEEEecCCEEEEEECCCCceeEE-------E----eccCceE----------EEEEEccCCC-EEEEeCCCcE
Confidence            996    88999999999999987643221       0    0000011          1122233434 8899999999


Q ss_pred             EEEEEecCCCC
Q 019672          310 VEYIFSINNCC  320 (337)
Q Consensus       310 ~~~~~~~~~~~  320 (337)
                      ++|+++..+..
T Consensus       290 ~iw~~~~~~~~  300 (313)
T 3odt_A          290 RIFSQEKSRWA  300 (313)
T ss_dssp             EEEESCGGGCC
T ss_pred             EEEeCCCCcee
Confidence            99999766543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=4.9e-31  Score=243.77  Aligned_cols=274  Identities=10%  Similarity=0.024  Sum_probs=203.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      .+++++|+|+|++|++|+.++ +++||+.+++.......+....+ .+.++++.++..+       .|+.|++||+++++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGT-------TEGDIKVLDSNFNL  130 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEE-------TTSCEEEECTTSCE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEE-------CCCCEEEEeCCCcc
Confidence            355789999999999998776 69999987755433333343333 4555666766554       48999999999988


Q ss_pred             EEEEE-EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEE
Q 019672           87 ALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus        87 ~~~~~-~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                      ....+ .+...|.+++|+++.  ++++. |+.|++||+.+++.+..+..+.  ..+.+++++|++.++++++  .||.|+
T Consensus       131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~--~d~~v~  206 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR--ATVTDIAIIDRGRNVLSAS--LDGTIR  206 (420)
T ss_dssp             EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS--SCEEEEEEETTTTEEEEEE--TTSCEE
T ss_pred             eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--CcEEEEEEcCCCCEEEEEc--CCCcEE
Confidence            77765 456689999998764  44444 8899999999998888886544  4577778888888999888  599999


Q ss_pred             EEEccCCccccc-----------------------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          163 VYNVMELHSHCE-----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       163 i~d~~~~~~~~~-----------------------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      +||+.+++....                             .++.+++|+|+|++|++|+.||. |++||+++++.+..+
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~  285 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQL  285 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEEE
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEEc
Confidence            999987764321                             34455667899999999999998 699999999988877


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCC
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  293 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  293 (337)
                      ..+ +...|.+++|+|+++  .+|++|+.||+|++||+++...+..     . +.......+..++.             
T Consensus       286 ~~~-~~~~v~~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~-----~-~~~~~~~~v~~~~~-------------  343 (420)
T 3vl1_A          286 PSK-FTCSCNSLTVDGNNA--NYIYAGYENGMLAQWDLRSPECPVG-----E-FLINEGTPINNVYF-------------  343 (420)
T ss_dssp             CCT-TSSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSE-----E-EEESTTSCEEEEEE-------------
T ss_pred             ccc-cCCCceeEEEeCCCC--CEEEEEeCCCeEEEEEcCCCcCchh-----h-hhccCCCCceEEEe-------------
Confidence            543 456799999999986  3899999999999999987643211     0 00000111112211             


Q ss_pred             CcccCEEEEEEeCCcEEEEEEecC
Q 019672          294 GVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       294 ~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                       +++..|++++.||.+++|++...
T Consensus       344 -~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          344 -AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -ETTEEEEEETTTEEEEEEEECCT
T ss_pred             -CCCCEEEEecCCccEEEEeccCC
Confidence             23368999999999999999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.98  E-value=2.1e-30  Score=241.31  Aligned_cols=237  Identities=12%  Similarity=0.154  Sum_probs=172.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc-----------EEEEEeeCC--------------EEEEEEccCC-
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-----------LCYERAVGA--------------FSIVEMLYSS-   58 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~-----------~~~~~~~~~--------------~~~~~~~~~~-   58 (337)
                      +.+.|++++|+|+|++||+|+.++ ++|||+.+++           .......+.              +..+.+.++. 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            457899999999999999999887 6999998776           344444443              5556666665 


Q ss_pred             -CEEEEEeCCCCCCCCCceEEEEECCCCCEE---------------------------------------EEE--EcCCc
Q 019672           59 -SLLAIVGAGEQPSLSPRRLCLFNTTTGTAL---------------------------------------REL--NFLTS   96 (337)
Q Consensus        59 -~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~---------------------------------------~~~--~~~~~   96 (337)
                       +.++..+       .|++|++||+.+++..                                       ..+  .+...
T Consensus       107 ~~~l~s~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          107 AAQFLLST-------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             SSEEEEEE-------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             cceEEEeC-------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence             4455444       4999999998764432                                       122  24558


Q ss_pred             eeEEEEcCCe--EEEEECCeEEEEECCC-Ceeeeee-----cCCCCCceEEEEeeCCCc-cEEEEcCCCCccEEEEEEcc
Q 019672           97 ILAVRLNKKR--LVIVLREKTYIYDANT-LAILDTI-----DTVPNLKGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus        97 v~~i~~~~~~--~~v~~d~~i~i~d~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~la~~~~~~dg~v~i~d~~  167 (337)
                      |.+++|+++.  ++.+.|+.|++||++. .+.+..+     ....+...+.+++++|++ .++++++  .||.|++||++
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence            9999998764  4444488999999984 3444422     111233457788888887 7888888  59999999998


Q ss_pred             CCcc----cc-----cC------------ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-CceeEeeccCCcc------
Q 019672          168 ELHS----HC-----EA------------PLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYP------  219 (337)
Q Consensus       168 ~~~~----~~-----~~------------~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~------  219 (337)
                      +++.    ..     ..            +|.+++|+|+|++|++++. |. |+|||+++ ++.+..+..+...      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeeccccccccccc
Confidence            8764    21     12            8999999999999999999 87 69999997 7777776532110      


Q ss_pred             ----e---eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          220 ----S---TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       220 ----~---~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                          .   .+..++|+|+++   +|++|+.||+|+|||+.+...
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~---~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDS---VVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSS---EEEEECSTTEEEEEETTTCCE
T ss_pred             cccccccccceEEEECCCCC---EEEEeccCCEEEEEEcCCCcc
Confidence                0   134589999999   999999999999999987643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=1.6e-29  Score=228.43  Aligned_cols=233  Identities=15%  Similarity=0.174  Sum_probs=177.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|++.++++|+.|+ +++||+.+++.+.....  ..+..+++.++.+.++.++       .|++|++|
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~-------~d~~i~~w  145 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG-------AEREIKLW  145 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE-------TTSCEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc-------CCCEEEEE
Confidence            46788999999999999999998877 69999999987766544  4566667777777776555       49999999


Q ss_pred             ECCCCCEEEEE----EcCCceeEEEEcCCe------------EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           81 NTTTGTALREL----NFLTSILAVRLNKKR------------LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        81 d~~~~~~~~~~----~~~~~v~~i~~~~~~------------~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                      |+.. +.....    .+...|.++.++++.            ++.+. |+.|++||. ..+....+..+.  ..+.++++
T Consensus       146 d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~  221 (343)
T 2xzm_R          146 NILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSI  221 (343)
T ss_dssp             ESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEE
T ss_pred             eccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEE
Confidence            9974 333332    244579999998753            44444 899999995 455666665543  45778888


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--eeccC
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRRG  216 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~--~~~~~  216 (337)
                      +|++.+|++++  .||.|++||+......     +..+|++++|+|++.+|++++ |+. |++||+.+++...  .+...
T Consensus       222 s~~g~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~~~~~~~~~~~~  297 (343)
T 2xzm_R          222 SPNGKYIATGG--KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQSKAPVCTIEAE  297 (343)
T ss_dssp             CTTSSEEEEEE--TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSCCSCSEEECCCC
T ss_pred             CCCCCEEEEEc--CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCCCCCceEEeecC
Confidence            89999999988  5999999999543321     236799999999999887665 555 6999998876543  33210


Q ss_pred             ---------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          217 ---------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       217 ---------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                               .+...|.+++|+|+|+   +|++|+.||+|++|+++++
T Consensus       298 ~~~~~~~~~~~~~~v~~~~~sp~g~---~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          298 PITKAEGQKGKNPQCTSLAWNALGK---KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SGGGBTTBCCSCCCEEEEEECSSSC---CEEEEETTSEEEEEEEEEE
T ss_pred             cchhhhhhcCCCCceEEEEECCCCC---eEEEecCCceEEEEEEEcc
Confidence                     2345699999999999   9999999999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.98  E-value=8.6e-30  Score=230.53  Aligned_cols=240  Identities=13%  Similarity=0.114  Sum_probs=178.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .+|..+|++++|+|+|++|++|+.++ +++|+..++.  .+.....  ..+..+++.++++.++..+       .|++|+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s-------~D~~v~  130 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS-------RDKSVW  130 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE-------CCCeEE
Confidence            46888999999999999999999877 6999987764  3344433  4566677777777776655       499999


Q ss_pred             EEECCCCCE---EEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCee--eeeecCCCCCceEEEEeeCCCccE
Q 019672           79 LFNTTTGTA---LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        79 iwd~~~~~~---~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +||+.++..   +..+. +...|.++.|+++.  ++.+. |+.|++||++.++.  ...+..+  ...+.+++++|++.+
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~  208 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQR  208 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCE
Confidence            999987653   33333 44589999998764  44444 88999999987753  3455444  446778888899999


Q ss_pred             EEEcCCCCccEEEEEEccCCcc---------------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          150 LAVPASTTKGSVLVYNVMELHS---------------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~---------------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      |++++  .||+|++||......                     .|...|.+++|+|++..||+++.|+. |++|+...+.
T Consensus       209 l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~  285 (345)
T 3fm0_A          209 LASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNS  285 (345)
T ss_dssp             EEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTS
T ss_pred             EEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCC
Confidence            99988  599999999743211                     14478999999999999999999998 6999987653


Q ss_pred             e----eEee---ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCccc
Q 019672          209 K----SYSF---RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       209 ~----~~~~---~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                      .    ...+   ....|...|++|+|+|++.  .+||+||.||+|+||++...+..
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP--GLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEEEECSSST--TEEEEEETTSCEEEEEECC----
T ss_pred             CcceeeEEEEeeecccccCcEeEeEEeCCCc--eEEEEcCCCCcEEEEEecCCCCc
Confidence            1    1111   1123456799999999974  28999999999999999876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.98  E-value=2.8e-29  Score=231.53  Aligned_cols=273  Identities=11%  Similarity=0.095  Sum_probs=202.3

Q ss_pred             eEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      +.+++|++ +.+++++.++.+++||+.+++.......   ..+..+.+.++++.++..+.       |+.|++||+.+++
T Consensus        96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-------dg~i~iwd~~~~~  167 (401)
T 4aez_A           96 LNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG-------NGLVDIYDVESQT  167 (401)
T ss_dssp             CBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET-------TSCEEEEETTTCC
T ss_pred             EEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC-------CCeEEEEECcCCe
Confidence            55577776 3455556566689999999987655433   45667777777777766554       8999999999999


Q ss_pred             EEEEEEc-CCceeEEEEcCCeEEEEE-CCeEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672           87 ALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (337)
Q Consensus        87 ~~~~~~~-~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i  163 (337)
                      .+..+.. ...|.++.++++.++++. |+.|++||++. ...+..+..+  ...+.++.++|++.++++++  .||.|++
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~--~d~~v~i  243 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH--SSEVCGLAWRSDGLQLASGG--NDNVVQI  243 (401)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEE--TTSCEEE
T ss_pred             EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC--CCCeeEEEEcCCCCEEEEEe--CCCeEEE
Confidence            9888854 458999999998888877 89999999984 4556666544  34677888888999999988  5899999


Q ss_pred             EEccCCccc-----ccCceEEEEeCCCCC-EEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          164 YNVMELHSH-----CEAPLAAIVLSSNGM-YIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       164 ~d~~~~~~~-----~~~~i~~~~~s~dg~-~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      ||+.+.+..     +..+|.+++|+|++. ++++++  .||. |++||+.+++.+..+..   ...|.+++|+|+++   
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~---  316 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVDA---GSQVTSLIWSPHSK---  316 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEEC---SSCEEEEEECSSSS---
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEeC---CCcEEEEEECCCCC---
Confidence            999987654     348899999999764 666665  6887 69999999999888852   35699999999999   


Q ss_pred             EEEEE--eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          236 ILVAT--SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       236 ~las~--s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      +|+++  +.||.|+||++........         ..++.          +...+..+.+.+++..|++++.||.+++|+
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~---------~~~~~----------h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQ---------VDIPA----------HDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEE---------EEEEC----------CSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeE---------EEecC----------CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            88884  4899999999876432110         00000          001112223355668999999999999999


Q ss_pred             EecCCCC
Q 019672          314 FSINNCC  320 (337)
Q Consensus       314 ~~~~~~~  320 (337)
                      +...+..
T Consensus       378 ~~~~~~~  384 (401)
T 4aez_A          378 VYDGDHV  384 (401)
T ss_dssp             CCC----
T ss_pred             CCCCccc
Confidence            9766544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.4e-29  Score=236.12  Aligned_cols=276  Identities=14%  Similarity=0.172  Sum_probs=202.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      .+..+|++++|  ++++|++|+.++ +++||+.+++.......+...+.++.++++.++..+       .|++|++||++
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~-------~dg~i~vwd~~  201 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-------SDSTVRVWDVN  201 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEE-------TTSCEEEEESS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEc-------CCCeEEEEECC
Confidence            45567999887  789999998887 699999999888777666556667777777766655       49999999999


Q ss_pred             CCCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeee---eeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           84 TGTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        84 ~~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      +++.+..+..+ ..|.++.++++.+++++ |+.|++||+.+++..   ..+..+  ...+.++++  ++.++++++  .|
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~--~d  275 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSAS--GD  275 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEE--TT
T ss_pred             CCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEe--CC
Confidence            99998888654 58999999998888777 899999999887654   344433  345667776  445888887  59


Q ss_pred             cEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          159 GSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       159 g~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      |.|++||+.+++..     |..+|.++++  ++++|++|+.||+ |++||+++++.+.++..  +...|.+++|  ++. 
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~~~-  347 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DNK-  347 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--CSS-
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--cCC-
Confidence            99999999987754     3488999999  5689999999998 69999999999988853  4567999999  677 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          234 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                        +|++|+.||+|+|||+.....+...... ..+. .+..          +...+..+.+  ++.+|++++.||.+++|+
T Consensus       348 --~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~----------h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          348 --RIVSGAYDGKIKVWDLVAALDPRAPAGT-LCLR-TLVE----------HSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             --EEEEEETTSCEEEEEHHHHTSTTSCTTT-TEEE-EECC----------CSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             --EEEEEeCCCcEEEEECCCCCCccccccc-hhee-eccC----------CCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence              9999999999999999765533211000 0000 0011          1111111222  457899999999999999


Q ss_pred             EecCCC
Q 019672          314 FSINNC  319 (337)
Q Consensus       314 ~~~~~~  319 (337)
                      +.....
T Consensus       412 ~~~~~~  417 (435)
T 1p22_A          412 FLNDPA  417 (435)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            976543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=4.8e-29  Score=231.41  Aligned_cols=269  Identities=13%  Similarity=0.110  Sum_probs=205.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe--eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      -++.++|+++ ..||+|.++.++|||..+++......  .+  .+..+++.++++.++..+       .|++|+|||+++
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs-------~Dg~v~iWd~~~  178 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQ  178 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSCEEEEETTT
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEE-------CCCeEEEEEcCC
Confidence            3667999986 48999998889999999998765443  33  366777777777776654       499999999999


Q ss_pred             CCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           85 GTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        85 ~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      ++++..+..+ ..+.++.+++..++.+. |+.+++||.... ..+..+..+  ...++.+...+++.++++++  .|+.|
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h--~~~~~~~~~~~~g~~l~s~~--~D~~v  254 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH--SQEVCGLRWAPDGRHLASGG--NDNLV  254 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEE--TTSCE
T ss_pred             CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccc--ccceeeeeecCCCCeeeeee--ccccc
Confidence            9999888655 47899999998888777 889999999765 334555544  34577778888889999988  59999


Q ss_pred             EEEEccCCccc---------ccCceEEEEeCCCCC-EEEEE--eCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          162 LVYNVMELHSH---------CEAPLAAIVLSSNGM-YIATA--SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       162 ~i~d~~~~~~~---------~~~~i~~~~~s~dg~-~lat~--s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                      ++||..+++..         +..+|.+++|+|++. +++++  +.|++ |++||+.+++.+..+..   ...+.++.|+|
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSP  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEET
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecC
Confidence            99999876532         338899999999654 55554  57887 79999999999887753   34588999999


Q ss_pred             CCCcccEEEEEe--CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          230 SMQFQDILVATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       230 dg~~~~~las~s--~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      +++   .|++++  .|++|+|||+.+......           +.          .|...+..+.+.+++.+|++++.||
T Consensus       331 ~~~---~lv~~sg~~d~~I~iwd~~~~~~v~~-----------l~----------gH~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          331 HYK---ELISGHGFAQNQLVIWKYPTMAKVAE-----------LK----------GHTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             TTT---EEEEEECTTTCCEEEEETTTCCEEEE-----------EC----------CCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             CCC---eEEEEEecCCCEEEEEECCCCcEEEE-----------Ec----------CCCCCEEEEEEcCCCCEEEEEecCC
Confidence            999   777765  789999999976543221           11          1111223344467779999999999


Q ss_pred             cEEEEEEecC
Q 019672          308 YFVEYIFSIN  317 (337)
Q Consensus       308 ~~~~~~~~~~  317 (337)
                      +|++|++...
T Consensus       387 tvriWdv~~~  396 (420)
T 4gga_A          387 TLRLWRCFEL  396 (420)
T ss_dssp             EEEEECCSCS
T ss_pred             eEEEEECCCC
Confidence            9999998644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=3.5e-29  Score=232.33  Aligned_cols=238  Identities=11%  Similarity=0.101  Sum_probs=183.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ..+...|++++|+|||++||+|+.++ ++|||+++++.+.....+...+.++.+++..++..+       .|+.+++||.
T Consensus       144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs-------~d~~i~~~d~  216 (420)
T 4gga_A          144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS-------RSGHIHHHDV  216 (420)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEE-------TTSEEEEEET
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEe-------CCCceeEeee
Confidence            45677899999999999999999887 699999999998887777666777777887766554       4899999998


Q ss_pred             CCCC-EEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCee----eeeecCCCCCceEEEEeeCCCc-cEEEE
Q 019672           83 TTGT-ALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI----LDTIDTVPNLKGLCAFSPSLNA-CFLAV  152 (337)
Q Consensus        83 ~~~~-~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~la~  152 (337)
                      .... .+..+.. ...+..+.++++.  ++.+. |+.+++||+.+++.    +.....+.  ..+.++.++|.+ .++++
T Consensus       217 ~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~--~~V~~~~~~p~~~~~la~  294 (420)
T 4gga_A          217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLAT  294 (420)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS--SCEEEEEECTTCTTEEEE
T ss_pred             cccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC--CceeeeeeCCCcccEEEE
Confidence            8654 4455544 4578888887754  33334 89999999987643    23333333  345555555533 35554


Q ss_pred             cCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          153 PASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                      ++...|+.|++||+.++.....    ..+.++.|+|+++.|++++  .||+ |+|||+.+++++.++. + |...|++|+
T Consensus       295 ~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~-g-H~~~V~~l~  371 (420)
T 4gga_A          295 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELK-G-HTSRVLSLT  371 (420)
T ss_dssp             EECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEEC-C-CSSCEEEEE
T ss_pred             EeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEc-C-CCCCEEEEE
Confidence            3322699999999998876543    7899999999999998876  7888 6999999999999985 3 466899999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      |||||+   +|++|+.|++|+|||+.....
T Consensus       372 ~spdg~---~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          372 MSPDGA---TVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             ECTTSS---CEEEEETTTEEEEECCSCSSC
T ss_pred             EcCCCC---EEEEEecCCeEEEEECCCCCc
Confidence            999999   999999999999999976443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.3e-29  Score=227.56  Aligned_cols=269  Identities=10%  Similarity=0.089  Sum_probs=198.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----EEEE-EeeCCEEEEEEccCCC-EEEEEeCCCCCCCCCce
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYE-RAVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----~~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~   76 (337)
                      ++|.+.|++++|+|++++|++|+.++ +++|++.+++    .... .+...+..+.+.++.+ .++..+       .|+.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~   80 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-------VQGE   80 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-------TTSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-------CCCe
Confidence            47889999999999999999988777 6999998876    3222 2335566777777777 665554       4899


Q ss_pred             EEEEEC-CCCCEEEEEE--cCCceeEEEEcC-CeEEEEE-CCeEEEEECCC---------CeeeeeecCCCCCceEEEEe
Q 019672           77 LCLFNT-TTGTALRELN--FLTSILAVRLNK-KRLVIVL-REKTYIYDANT---------LAILDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        77 v~iwd~-~~~~~~~~~~--~~~~v~~i~~~~-~~~~v~~-d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~  142 (337)
                      |++||+ .+++......  +...|.++.+++ +.++++. |+.|++||+++         ++.+..+.   ....+.+++
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~  157 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMD  157 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEE
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEE
Confidence            999999 8887643334  666899999986 4445455 88999999987         66555554   334577778


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccC-Cccc-------ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCC------
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVME-LHSH-------CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEA------  207 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~-~~~~-------~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~------  207 (337)
                      +++++  +++++  .++.|++||+.+ +...       +..+|.+++|+| ++++|++++.||. |++|++..+      
T Consensus       158 ~~~~~--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          158 TNSSR--LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNS  232 (342)
T ss_dssp             ECSSE--EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTC
T ss_pred             ecCCc--EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccccc
Confidence            88776  66665  489999999988 4421       337899999999 9999999999997 699999877      


Q ss_pred             ceeEeeccCCc-------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccc-ceeec
Q 019672          208 TKSYSFRRGTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES-VNEVL  279 (337)
Q Consensus       208 ~~~~~~~~~~~-------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~w  279 (337)
                      +.+..+..+..       ...|.+++|+|+++   +|++++.||+|+|||+.+.+....           +... ...+ 
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~-----------~~~~h~~~v-  297 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKKIKN-----------FAKFNEDSV-  297 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEE-----------CCCCSSSEE-
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCC---EEEEecCCceEEEEcCccHhHhhh-----------hhcccCCCc-
Confidence            66666653211       23799999999999   999999999999999986543221           1100 0011 


Q ss_pred             ccccceeeeeccCCCcccCEEEEEEeCCc-EEEEE
Q 019672          280 DPADHHVLRNAFPAGVKRASVSVITYNGY-FVEYI  313 (337)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-~~~~~  313 (337)
                               ..+.  ++++.|++++.||. .+.|.
T Consensus       298 ---------~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          298 ---------VKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ---------EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ---------eEec--CCCCeEEEEecCCccccccc
Confidence                     1112  45689999999998 44444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=1.4e-28  Score=237.79  Aligned_cols=279  Identities=14%  Similarity=0.162  Sum_probs=198.7

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeCCCCcEEEEEee--C---CEEEEEEccC-CCEEEEEeCCCCCCCCCc
Q 019672            4 QSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTGRLCYERAV--G---AFSIVEMLYS-SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~~~~~~~~~~~~--~---~~~~~~~~~~-~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+..+|++++|+|+++ .|++|+.++ +++||+.+++.+.....  .   .+..+.+.++ .+.++..+       .|+
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg  229 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-------SDR  229 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-------TTC
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe-------CCC
Confidence            45778999999999998 788888877 69999999988776653  3   4666667666 66666554       389


Q ss_pred             eEEEEECCCCCEEEEE-----EcCCceeEEEEc-CCeEEEEE-CCeEEEEECCCCeeeeeecCCCC--------------
Q 019672           76 RLCLFNTTTGTALREL-----NFLTSILAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDTVPN--------------  134 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~-----~~~~~v~~i~~~-~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--------------  134 (337)
                      .|++||+++++.+..+     .+..+|.++.|+ ++.++++. |+.|++||+++++.+..+..+..              
T Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (615)
T 1pgu_A          230 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN  309 (615)
T ss_dssp             CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred             eEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence            9999999999999988     566789999996 33455555 78999999988776655543210              


Q ss_pred             --------------------------------------------------------------CceEEEEeeC--------
Q 019672          135 --------------------------------------------------------------LKGLCAFSPS--------  144 (337)
Q Consensus       135 --------------------------------------------------------------~~~~~~~~~~--------  144 (337)
                                                                                    ...+.++++.        
T Consensus       310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~  389 (615)
T 1pgu_A          310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI  389 (615)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred             CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence                                                                          0001111110        


Q ss_pred             --------------------------CC--------------------------------------ccEEEEcCCCC-cc
Q 019672          145 --------------------------LN--------------------------------------ACFLAVPASTT-KG  159 (337)
Q Consensus       145 --------------------------~~--------------------------------------~~~la~~~~~~-dg  159 (337)
                                                |+                                      +.++++++  . +|
T Consensus       390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~d~  467 (615)
T 1pgu_A          390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL--EEGN  467 (615)
T ss_dssp             ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE--TTTS
T ss_pred             eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee--cCCC
Confidence                                      00                                      12233332  3 66


Q ss_pred             EEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec----
Q 019672          160 SVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ----  229 (337)
Q Consensus       160 ~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~----  229 (337)
                      .|++||+.+....      +..+|++++|+|+|++||+++.||. |++||+.+++.+..+. +.|...|++++|+|    
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRW-AFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCS-CCCSSCEEEEEECCCC--
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCCcceeEee-cCCCCceeEEEEcCcccc
Confidence            7777777654331      3488999999999999999999998 6999999999988774 32467899999999    


Q ss_pred             ------CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEE
Q 019672          230 ------SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  303 (337)
Q Consensus       230 ------dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~  303 (337)
                            +++   +|++++.||+|+|||+++......          .+.....          .+..+.+.+++. |+++
T Consensus       546 ~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~h~~----------~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          546 ANEEEIEED---LVATGSLDTNIFIYSVKRPMKIIK----------ALNAHKD----------GVNNLLWETPST-LVSS  601 (615)
T ss_dssp             ----CCSCC---EEEEEETTSCEEEEESSCTTCCEE----------ETTSSTT----------CEEEEEEEETTE-EEEE
T ss_pred             ccccccCCC---EEEEEcCCCcEEEEECCCCceech----------hhhcCcc----------ceEEEEEcCCCC-eEEe
Confidence                  999   999999999999999987532110          0110001          112223345557 9999


Q ss_pred             EeCCcEEEEEEecC
Q 019672          304 TYNGYFVEYIFSIN  317 (337)
Q Consensus       304 ~~dg~~~~~~~~~~  317 (337)
                      +.||.+++|+++++
T Consensus       602 ~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          602 GADACIKRWNVVLE  615 (615)
T ss_dssp             ETTSCEEEEEEC--
T ss_pred             cCCceEEEEeeecC
Confidence            99999999999753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-30  Score=230.94  Aligned_cols=239  Identities=12%  Similarity=0.153  Sum_probs=180.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCC--CcEEEEEee--CCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST--GRLCYERAV--GAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~--~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+|..+|++++|+|++++|++|+.++ ++|||+..  ++.+.....  ..+..+.+.++  .+.++.++       .|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-------~dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-------TTS
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-------cCC
Confidence            347899999999999999999998777 69999974  444444433  44555666544  56665554       489


Q ss_pred             eEEEEECCCCC--EEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC--
Q 019672           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL--  145 (337)
Q Consensus        76 ~v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (337)
                      .|++||+.+++  .+..+. +...|.++.|+++    .++++. |+.|++||++.......+....+...+.++.++|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  445554 4568999999876    355555 8899999998874333222223344677777777  


Q ss_pred             -----------CccEEEEcCCCCccEEEEEEccCCccc---------ccCceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 019672          146 -----------NACFLAVPASTTKGSVLVYNVMELHSH---------CEAPLAAIVLSSN---GMYIATASEQGTIIRVF  202 (337)
Q Consensus       146 -----------~~~~la~~~~~~dg~v~i~d~~~~~~~---------~~~~i~~~~~s~d---g~~lat~s~dg~~i~vw  202 (337)
                                 ++.++++++  .||.|++||+.+....         |..+|.+++|+|+   +++|++++.||. |++|
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iw  236 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  236 (379)
T ss_dssp             ----------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred             ccccccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEE
Confidence                       578888887  5999999999865421         3488999999999   899999999998 6999


Q ss_pred             EcCCCc---eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          203 LVSEAT---KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       203 d~~~~~---~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      |+.+++   ....+....+...|.+++|+|+|+   +|++++.||.|+||++...
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEESSSSEEEEEEEET
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCC---EEEEecCCCcEEEEeCCCC
Confidence            999875   222232223456799999999999   9999999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=3.8e-29  Score=240.50  Aligned_cols=268  Identities=13%  Similarity=0.153  Sum_probs=198.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+..+|++++|+||++.|++++.++ +++||.. ++.+.....  ..+..+.+.++...++..+       .|++|++|
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-------~d~~i~~w  330 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASAS-------DDKTVKLW  330 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEe-------CCCeEEEE
Confidence            45778999999999999999998877 6999975 444444433  4455566666667766655       38999999


Q ss_pred             ECCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |..... +..+. +..+|.++++++++  ++++. ++.+++||. +++.+..+..+.  ..+.+++++|++.++++++  
T Consensus       331 ~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~l~~~~--  404 (577)
T 2ymu_A          331 NRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQTIASAS--  404 (577)
T ss_dssp             ETTSCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--SCEEEEEECTTSSCEEEEE--
T ss_pred             eCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--CCeEEEEECCCCCEEEEEe--
Confidence            986554 44443 45689999998875  33344 889999996 456677776544  3567778888899999887  


Q ss_pred             CccEEEEEEccCCcc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          157 TKGSVLVYNVMELHS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .|+.|++||......    .|..+|++++|+||+++||+++.|++ |++||. +++.+..+..  +...|.+++|+||++
T Consensus       405 ~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          405 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTTSC
T ss_pred             CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCCCC
Confidence            599999999653321    24488999999999999999999997 699996 5667776643  356799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEE
Q 019672          233 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  312 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~  312 (337)
                         +||+++.|++|+|||.... ..+           .+.          .+...+..+.+.+++++|++++.||.+++|
T Consensus       481 ---~las~~~d~~i~iw~~~~~-~~~-----------~~~----------~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          481 ---TIASASDDKTVKLWNRNGQ-LLQ-----------TLT----------GHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             ---EEEEEETTSEEEEEETTSC-EEE-----------EEE----------CCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ---EEEEEeCCCEEEEEcCCCC-EEE-----------EEe----------CCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence               9999999999999996421 111           000          011112334446677899999999999999


Q ss_pred             EE
Q 019672          313 IF  314 (337)
Q Consensus       313 ~~  314 (337)
                      +.
T Consensus       536 d~  537 (577)
T 2ymu_A          536 NR  537 (577)
T ss_dssp             CT
T ss_pred             eC
Confidence            85

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.4e-28  Score=218.73  Aligned_cols=233  Identities=13%  Similarity=0.169  Sum_probs=185.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+..+|++++|+|++++|++|+.++ +++||+.+++.+.....  ..+..+.+.++.+.++..+       .|++|++|
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw  134 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-------FDESVRIW  134 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-------TTSCEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-------CCCcEEEE
Confidence            46788999999999999999998887 59999999987766554  3456666666667766554       48999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      |+++++.+..+..+ .+|.++.++++.  ++++. |+.|++||+++++.+..+... +...+..++++|++.++++++  
T Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--  211 (312)
T 4ery_A          135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAAT--  211 (312)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEE--
T ss_pred             ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEc--
Confidence            99999998887654 589999998764  44444 899999999998877776432 223466777888888999887  


Q ss_pred             CccEEEEEEccCCccccc-----C---ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          157 TKGSVLVYNVMELHSHCE-----A---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~~-----~---~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .||.|++||+.+++....     .   .+......+++.+|++|+.||. |++||+++++.+.++..  |...|.+++|+
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~--h~~~v~~~~~~  288 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQG--HTDVVISTACH  288 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECC--CSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhc--cCCcEEEEeec
Confidence            599999999998765422     2   2333444578999999999998 69999999999888853  35679999999


Q ss_pred             cCCCcccEEEEEe--CCCcEEEEecC
Q 019672          229 QSMQFQDILVATS--SSGSLHVFSPG  252 (337)
Q Consensus       229 ~dg~~~~~las~s--~dg~v~iw~l~  252 (337)
                      |+++   +|++++  .|++|+||+.+
T Consensus       289 p~~~---~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          289 PTEN---IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSS---EEEEEECTTTCCEEEEECC
T ss_pred             CcCC---ceEEEEccCCccEEEecCC
Confidence            9999   999987  69999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=231.75  Aligned_cols=274  Identities=16%  Similarity=0.186  Sum_probs=200.3

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeC----CCCc------EEEEEee------------CCEEEEEEccCCCEE
Q 019672            6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDS----STGR------LCYERAV------------GAFSIVEMLYSSSLL   61 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~----~~~~------~~~~~~~------------~~~~~~~~~~~~~~~   61 (337)
                      +..+|++++|+|+|+ +|++|+.++ +++|++    .+++      .......            ..+..+++.++++.+
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            457899999999999 999999877 699999    8887      3333221            256667777777777


Q ss_pred             EEEeCCCCCCCCCceEEEEECCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCce
Q 019672           62 AIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (337)
Q Consensus        62 ~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (337)
                      +..+.       |+.|++|| .+++.+..+. +...|.++.|+++.  ++++. |+.|++||+.+++.+..+..+.....
T Consensus       124 ~~~~~-------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          124 VTGVE-------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEET-------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEeC-------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            66553       89999999 6677777776 44589999998764  44454 88999999999988888765543211


Q ss_pred             -------------EEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEE
Q 019672          138 -------------LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTII  199 (337)
Q Consensus       138 -------------~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i  199 (337)
                                   +.++.+++++ .+++++  .+|.|++||+.+.+..     +..+|.+++|+|++++|++++.||. |
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i  271 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDD-KFVIPG--PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-L  271 (425)
T ss_dssp             ----------CCCBSCCEEEETT-EEEEEC--GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-E
T ss_pred             ceeeccccCCcceeeEEEEcCCC-EEEEEc--CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-E
Confidence                         3344444554 456666  4899999999887654     3488999999999999999999998 6


Q ss_pred             EEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeec
Q 019672          200 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  279 (337)
Q Consensus       200 ~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w  279 (337)
                      ++||+.+++.+..+..  +...|.+++|+|++    +|++++.|+.|++||+.+......          +.. .     
T Consensus       272 ~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~----------~~~-~-----  329 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYG--HSQSIVSASWVGDD----KVISCSMDGSVRLWSLKQNTLLAL----------SIV-D-----  329 (425)
T ss_dssp             EEECSSSBSCSEEECC--CSSCEEEEEEETTT----EEEEEETTSEEEEEETTTTEEEEE----------EEC-T-----
T ss_pred             EEEECCCCccceEecC--CCccEEEEEECCCC----EEEEEeCCCcEEEEECCCCcEeEe----------ccc-C-----
Confidence            9999999988877742  35679999999998    699999999999999976543211          000 0     


Q ss_pred             ccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          280 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                           ...+..+.+.++++.|++++.||.+++|+++..+
T Consensus       330 -----~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          330 -----GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             -----TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             -----CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence                 0011122334566899999999999999997554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=4.6e-30  Score=229.52  Aligned_cols=234  Identities=14%  Similarity=0.128  Sum_probs=166.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEee--CCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAV--GAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~~--~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+|..+|++++|+|+|++||+|+.|+ ++|||+.+++.  +.....  ..+..+++.++  ++.++.++       .|+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s-------~D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCS-------YDR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEE-------TTS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEE-------CCC
Confidence            457899999999999999999999887 69999987743  344433  44555565442  45665554       499


Q ss_pred             eEEEEECCCCC--EEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeC
Q 019672           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        76 ~v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~  144 (337)
                      +|++||+++++  .+..+. +...|.+++|+++    .++.+. |+.|++||++....   ...+..+.  ..+.+++++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~~  159 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT--IGCNAVSWA  159 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS--SCBCCCEEC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc--CCcceEEEc
Confidence            99999999874  445554 4558999999875    244444 88999999987532   22333332  233344444


Q ss_pred             CC-----------------ccEEEEcCCCCccEEEEEEccCCc---c-----cccCceEEEEeCCCC----CEEEEEeCC
Q 019672          145 LN-----------------ACFLAVPASTTKGSVLVYNVMELH---S-----HCEAPLAAIVLSSNG----MYIATASEQ  195 (337)
Q Consensus       145 ~~-----------------~~~la~~~~~~dg~v~i~d~~~~~---~-----~~~~~i~~~~~s~dg----~~lat~s~d  195 (337)
                      |+                 +.++++++  .|+.|++||+....   .     .|..+|.+++|+|++    ++||+|+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             cccCCccccccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence            43                 35778777  59999999997541   2     245889999999987    899999999


Q ss_pred             CcEEEEEEcCCCc---e-eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          196 GTIIRVFLVSEAT---K-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       196 g~~i~vwd~~~~~---~-~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |+ |+|||+.++.   . ...+.  .+...|++++|+|+++   +||+++.|++|+||+...
T Consensus       238 ~~-v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~---~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          238 GR-VFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITAN---ILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CE-EEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTC---CEEEEESSSCEEEEEECT
T ss_pred             Ce-EEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCC---EEEEEcCCCeEEEEEECC
Confidence            98 6999997631   1 11221  2355799999999999   999999999999999753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.6e-29  Score=227.27  Aligned_cols=232  Identities=13%  Similarity=0.087  Sum_probs=167.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCC-------CcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST-------GRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      |..+|++++|+|++++|++|+.++ ++|||++.       .+.+....  ...+..+++.++++.++.++       .|+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s-------~D~  129 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS-------RDK  129 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE-------TTS
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe-------CCC
Confidence            788999999999999999998877 69999853       23333333  34566667766677766555       499


Q ss_pred             eEEEEECCCC----CEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCC--eeeeeecCCCCCceEEEEeeCC
Q 019672           76 RLCLFNTTTG----TALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        76 ~v~iwd~~~~----~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      +|++||+...    +++..+. +...|.++.|+|+.  ++.+. |++|++||+.++  +.+..+..+..  .+.++.++|
T Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~  207 (330)
T 2hes_X          130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDK  207 (330)
T ss_dssp             CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECC
T ss_pred             EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC--cEEEEEecC
Confidence            9999999432    3445554 44589999998764  44444 899999998766  56666765544  455666666


Q ss_pred             C--ccEEEEcCCCCccEEEEEEccCCc--------c------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc-
Q 019672          146 N--ACFLAVPASTTKGSVLVYNVMELH--------S------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-  208 (337)
Q Consensus       146 ~--~~~la~~~~~~dg~v~i~d~~~~~--------~------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~-  208 (337)
                      +  +.++++++  .|++|++||+....        .      .|..+|.+++|++++ +||+++.||+ |+|||..+++ 
T Consensus       208 ~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~  283 (330)
T 2hes_X          208 TEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEW  283 (330)
T ss_dssp             SSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEE
T ss_pred             CCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCce
Confidence            5  66888887  59999999987541        1      155789999999776 8999999998 6999998874 


Q ss_pred             -eeEeeccCCcceeEEEEEeec--CCCcccEEEEEeCCCcEEEEecCC
Q 019672          209 -KSYSFRRGTYPSTIFSLSFGQ--SMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       209 -~~~~~~~~~~~~~i~~l~fs~--dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                       .+.....++....|.+++|+|  +++   +||+|+.||+|+||+++.
T Consensus       284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~---~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          284 KVFAKRALCHGVYEINVVKWLELNGKT---ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEESCTTTTSCEEEEEEC-----C---CEEEEETTSEEEEEEC--
T ss_pred             EEEeccccccccceEEEEEEecCCCce---EEEEecCCCcEEEEEecc
Confidence             333332333223799999999  688   899999999999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.9e-28  Score=216.28  Aligned_cols=266  Identities=13%  Similarity=0.121  Sum_probs=199.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe--eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      +++++||+++ +||+|.++.++|||+++++.+....  .+  .+..+.+.++.+.++..+       .|++|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs-------~Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT-------SSAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE-------CCCcEEEeecCCc
Confidence            5679999986 8999998889999999998766543  23  366677777777776554       4999999999999


Q ss_pred             CEEEEEEcCC-ceeEEEEcCCeEEEEE-CCeEEEEECCCCe-eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEE
Q 019672           86 TALRELNFLT-SILAVRLNKKRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus        86 ~~~~~~~~~~-~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                      +++..+..+. .+.++...++.++.+. ++.+++|+..... .+..+..+.  ..+..+...+++.++++++  .||.|+
T Consensus       100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~~--~d~~i~  175 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEVCGLRWAPDGRHLASGG--NDNLVN  175 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEE--TTSCEE
T ss_pred             eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc--CceEEEEEcCCCCEEEEEe--cCccee
Confidence            9998887654 6888888888877777 7899999987653 344444443  3466667777888999887  599999


Q ss_pred             EEEccCCccc---------ccCceEEEEeCCCCCEE---EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          163 VYNVMELHSH---------CEAPLAAIVLSSNGMYI---ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       163 i~d~~~~~~~---------~~~~i~~~~~s~dg~~l---at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      +||+.+++..         +.++|.+++++|++..+   ++++.+++ |++||...+.......   +...+..+.|+|+
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~  251 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPH  251 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETT
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeeccc
Confidence            9999876542         22789999999976633   46667886 7999999888766553   2346889999999


Q ss_pred             CCcccEEEEEe--CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672          231 MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  308 (337)
Q Consensus       231 g~~~~~las~s--~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  308 (337)
                      +.   .+++++  .|++|+|||+++.+....           +..          |...+..+.+.+++++|++++.||+
T Consensus       252 ~~---~~~~~sg~~d~~i~iwd~~~~~~~~~-----------l~g----------H~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          252 YK---ELISGHGFAQNQLVIWKYPTMAKVAE-----------LKG----------HTSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             TT---EEEEEECTTTCCEEEEETTTCCEEEE-----------ECC----------CSSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cc---ceEEEEEcCCCEEEEEECCCCcEEEE-----------EcC----------CCCCEEEEEEcCCCCEEEEEecCCe
Confidence            98   776654  799999999986653221           111          1111233344667789999999999


Q ss_pred             EEEEEEe
Q 019672          309 FVEYIFS  315 (337)
Q Consensus       309 ~~~~~~~  315 (337)
                      |++|++.
T Consensus       308 v~iWd~~  314 (318)
T 4ggc_A          308 LRLWRCF  314 (318)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9999874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.5e-31  Score=240.15  Aligned_cols=230  Identities=11%  Similarity=0.114  Sum_probs=168.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      +..+|++++|+|+|++|++|+.++ ++|||+.++  +.+....  ...+..+.+.++++.++..+       .|++|++|
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-------~d~~v~vw   82 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-------QDRNAYVY   82 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-------TTSSEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-------CCCeEEEE
Confidence            567899999999999999997776 699999887  4444433  34566677777777776655       38999999


Q ss_pred             ECCCCC---EEEEE-EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCee---eeeecCCCCCceEEEEeeCCCccEE
Q 019672           81 NTTTGT---ALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        81 d~~~~~---~~~~~-~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      |+.+++   +...+ .+...|.++.|+++.  ++++. |+.|++||+++++.   ...+.. .+...+.+++++|++.++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence            999877   34433 455689999998753  55555 88999999988763   555554 134567788888899999


Q ss_pred             EEcCCCCccEEEEEEccCC------------------cc----cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          151 AVPASTTKGSVLVYNVMEL------------------HS----HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~------------------~~----~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      ++++  .||.|++||+...                  +.    .|..+|.+++|+|+|++||+++.||+ |++||+.+++
T Consensus       162 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~  238 (377)
T 3dwl_C          162 AAGC--ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAPE  238 (377)
T ss_dssp             EEEE--SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECSTT
T ss_pred             EEEe--CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCCC
Confidence            9988  5899999998522                  11    24478999999999999999999997 6999999998


Q ss_pred             e----eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          209 K----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       209 ~----~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .    +..+..  +...|.+++|+|+++   +|++++.++.+ +|+..
T Consensus       239 ~~~~~~~~~~~--~~~~v~~~~~s~~~~---~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          239 QPPRALITVKL--SQLPLRSLLWANESA---IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEECCCEEC--SSSCEEEEEEEETTE---EEEEESSSSEE-EECCC
T ss_pred             CcceeeEeecC--CCCceEEEEEcCCCC---EEEEEcCCcEE-EEEeC
Confidence            7    555542  356799999999999   89998877666 77665

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=8.7e-30  Score=237.58  Aligned_cols=278  Identities=9%  Similarity=0.061  Sum_probs=181.2

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcE--EEEEe--eCCEEEEEEcc-CCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRL--CYERA--VGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~--~~~~~--~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      +++..|+|++|+| ++++||+|+.+| ++|||+.+++.  .....  ...+..+++.+ +++.++.++       .|++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-------~D~~v  189 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-------MEGTT  189 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-------SSSCE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-------CCCEE
Confidence            4677899999999 567899999887 69999987754  23322  24455566654 345555443       49999


Q ss_pred             EEEECCCCCEEEEEEcC---CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc-EE
Q 019672           78 CLFNTTTGTALRELNFL---TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FL  150 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  150 (337)
                      ++||++++........+   ..+.++.++++.  ++++. |+.|++||++. +.+..+..+.  ..+.+++++|++. ++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~--~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK--KKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS--SCEEEEEECTTCSSEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc--ceEEeeeecCCCceEE
Confidence            99999876543333322   256788887764  33333 88999999964 4555665544  3567777777665 56


Q ss_pred             EEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc---
Q 019672          151 AVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP---  219 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~---  219 (337)
                      ++++  .|+.|+|||+++.+..        |..+|++++|+|+|++|++++.||+ |+|||+.+++.+..+......   
T Consensus       267 ~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          267 ATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCS
T ss_pred             EEec--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccc
Confidence            6666  5999999999875432        4488999999999999999999998 699999998877665322111   


Q ss_pred             -eeEEEEEeecCCCcccEEEEEe------------CCCcEEEEecCCCcccCCCCcccccccccccccceeeccccccee
Q 019672          220 -STIFSLSFGQSMQFQDILVATS------------SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  286 (337)
Q Consensus       220 -~~i~~l~fs~dg~~~~~las~s------------~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  286 (337)
                       ..+..+.|+|++.   ++++++            .+++|+|||+.++.....          ........+.+      
T Consensus       344 ~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~----------l~~~~~~~v~s------  404 (435)
T 4e54_B          344 HLTPIKAAWHPRYN---LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ----------LYDPESSGISS------  404 (435)
T ss_dssp             SSCCCBCEECSSSS---CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE----------ECCSSCCCCCC------
T ss_pred             cceeEEEEEcCCCC---EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE----------EeCCCCCcEEE------
Confidence             1123345666665   555543            346799999876643211          00000000110      


Q ss_pred             eeeccCCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          287 LRNAFPAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                         ...+.+++..|+++ .||.|++|++.+.+
T Consensus       405 ---~~~fspdg~~lasg-~d~~i~iW~~~~gk  432 (435)
T 4e54_B          405 ---LNEFNPMGDTLASA-MGYHILIWSQQEAR  432 (435)
T ss_dssp             ---EEEECTTSSCEEEE-CSSEEEECCCC---
T ss_pred             ---EEEECCCCCEEEEE-cCCcEEEEECCcCe
Confidence               01234455666655 59999999886543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.1e-28  Score=227.60  Aligned_cols=239  Identities=12%  Similarity=0.075  Sum_probs=184.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-   83 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-   83 (337)
                      +..+|++++|+|++++|++|+.++ +++||+.+++.+.....+...+.++.++++.++..+       .|+.|++||++ 
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-------~dg~i~i~d~~~  205 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGS-------RSGAIHHHDVRI  205 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEE-------TTSEEEEEETTS
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEc-------CCCCEEEEeccc
Confidence            678899999999999999998877 699999999888777655555555666777666555       48999999998 


Q ss_pred             CCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc-cEEEEcCCCCc
Q 019672           84 TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAVPASTTK  158 (337)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~la~~~~~~d  158 (337)
                      .+..+..+. +...|.++.|+++.  ++++. |+.|++||+++++.+..+..+..  .+.+++++|++ .++++++...|
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~ll~~~~gs~d  283 (401)
T 4aez_A          206 ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA--AVKAVAWCPWQSNLLATGGGTMD  283 (401)
T ss_dssp             SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS--CCCEEEECTTSTTEEEEECCTTT
T ss_pred             CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc--eEEEEEECCCCCCEEEEecCCCC
Confidence            455566655 45689999998764  44455 89999999999888888765544  44555666644 45565532259


Q ss_pred             cEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          159 GSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       159 g~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +.|++||+.+++...    ..+|.+++|+|+|++|++++  .||. |+|||+.+++.........+...|.+++|+|+|+
T Consensus       284 ~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~  362 (401)
T 4aez_A          284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR  362 (401)
T ss_dssp             CEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECCCCC
Confidence            999999999887653    37899999999999999954  8997 6999999977655543233456799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCccc
Q 019672          233 FQDILVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~~  257 (337)
                         +|++++.||+|+||++..++..
T Consensus       363 ---~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          363 ---ILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             ---EEEEECTTSEEEEEECCC----
T ss_pred             ---EEEEEeCCCcEEEEECCCCccc
Confidence               9999999999999999876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.5e-28  Score=256.47  Aligned_cols=297  Identities=12%  Similarity=0.100  Sum_probs=218.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|...|++++|+|||++|++|+.++ +++||+.+++.+.....  ..+..+.+.++++.++.++.       |++|++|
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------d~~v~vw  684 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-------DKKVKIW  684 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-------CCeEEEE
Confidence            46889999999999999999998887 69999999988777654  45666666667777766553       8999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcC--Ce--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNK--KR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~--~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      |+.+++.+..+..+ ..|.++.|++  +.  ++.+. |+.|++||+.+++.+..+..+..  .+.+++++|++.++++++
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--SVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS--CEEEEEECSSTTEEEEEE
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC--CEEEEEEecCCCEEEEEE
Confidence            99999999888654 4899999987  33  33333 88999999999998888876544  577777788888999988


Q ss_pred             CCCccEEEEEEccCCcc------------------------------------------------------------ccc
Q 019672          155 STTKGSVLVYNVMELHS------------------------------------------------------------HCE  174 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~------------------------------------------------------------~~~  174 (337)
                        .||.|++||+.++..                                                            .+.
T Consensus       763 --~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~  840 (1249)
T 3sfz_A          763 --ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH  840 (1249)
T ss_dssp             --SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred             --CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence              599999999875431                                                            122


Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ..|.+++|+|+|+++++++.||. |++||+.+++.+..+..  |...|.+++|+|+|+   +|++++.||+|++|++...
T Consensus       841 ~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~---~l~s~s~dg~v~vw~~~~~  914 (1249)
T 3sfz_A          841 STIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGS---SFLTASDDQTIRVWETKKV  914 (1249)
T ss_dssp             SCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSS---EEEEEETTSCEEEEEHHHH
T ss_pred             CceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCC---EEEEEeCCCeEEEEEcccc
Confidence            57889999999999999999998 69999999998888752  456799999999999   9999999999999998653


Q ss_pred             cccCCCCccccccccccc----------ccceeecccccc------eeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          255 INQRRGGRTSSILGSILP----------ESVNEVLDPADH------HVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~----------~~~~~~w~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ...............+.+          ......+.....      ......+.+.++++.+++++.||.+++|++...
T Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            222110000000000000          000001110000      001233445677899999999999999988543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=4.5e-28  Score=226.29  Aligned_cols=275  Identities=13%  Similarity=0.148  Sum_probs=209.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .++..+|++++|+  ++++++|+.++ +++||+.+++.+.....+...+.++.++++.++..+       .|++|++||+
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s-------~dg~i~~wd~  226 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS-------RDATLRVWDI  226 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEE-------TTSEEEEEES
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEe-------CCCEEEEEEC
Confidence            4678899999998  56888888776 699999999888777655555556666777766554       4899999999


Q ss_pred             CCCCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           83 TTGTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      .+++.+..+..+ ..|.++.++++.++++. |+.|++||+++++.+..+..+..  .+.++.+  ++.++++++  .||.
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~--~d~~  300 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGS--LDTS  300 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEE--TTSC
T ss_pred             CCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEe--CCCe
Confidence            999998887644 58999999888888877 88999999999998888875543  5666676  456888887  5999


Q ss_pred             EEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcc
Q 019672          161 VLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       161 v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~  234 (337)
                      |++||+.+++...     ...+.++.+  ++++|++|+.||. |++||+++++.+..+... .+...|.+++|+  ++  
T Consensus       301 i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--  373 (445)
T 2ovr_B          301 IRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN--  373 (445)
T ss_dssp             EEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS--
T ss_pred             EEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC--
Confidence            9999999887543     367787776  5679999999998 699999999998888532 245679999996  45  


Q ss_pred             cEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc----EE
Q 019672          235 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY----FV  310 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----~~  310 (337)
                       +|++|+.||+|+|||+.+++.....      ...........+|          .+.+.+++..+++++.||.    +.
T Consensus       374 -~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~~~~~~~v~----------~~~~s~~~~~la~~~~dg~~~~~l~  436 (445)
T 2ovr_B          374 -FVITSSDDGTVKLWDLKTGEFIRNL------VTLESGGSGGVVW----------RIRASNTKLVCAVGSRNGTEETKLL  436 (445)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEEE------EECTTGGGTCEEE----------EEEECSSEEEEEEECSSSSSCCEEE
T ss_pred             -EEEEEeCCCeEEEEECCCCceeeee------eccccCCCCceEE----------EEEecCCEEEEEEcccCCCCccEEE
Confidence             9999999999999999876542210      0000001111222          2333566688999999998    99


Q ss_pred             EEEEecC
Q 019672          311 EYIFSIN  317 (337)
Q Consensus       311 ~~~~~~~  317 (337)
                      +|+++.+
T Consensus       437 v~df~~~  443 (445)
T 2ovr_B          437 VLDFDVD  443 (445)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1e-28  Score=220.68  Aligned_cols=238  Identities=16%  Similarity=0.194  Sum_probs=178.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----EEEEEee--CCEEEEEEccC--CCEEEEEeCCCCCCCCC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYERAV--GAFSIVEMLYS--SSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----~~~~~~~--~~~~~~~~~~~--~~~~~~~~~g~~~~~~d   74 (337)
                      .+|.++|++++|+|++++|++|+.++ +++||+.++.    .......  ..+..+++.+.  .+.++.++       .|
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~-------~d   80 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS-------YD   80 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE-------TT
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc-------CC
Confidence            57899999999999999999999887 6999998763    3333333  44555565552  55555544       48


Q ss_pred             ceEEEEECCCC---------CEEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEEEEECCCCeeeeeec---------
Q 019672           75 RRLCLFNTTTG---------TALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTID---------  130 (337)
Q Consensus        75 ~~v~iwd~~~~---------~~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~~~~~~---------  130 (337)
                      ++|++||++++         +++..+. +...|.++.|+++    .++++. |+.|++||+++++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999887         3455554 4568999999875    345555 8999999998876544332         


Q ss_pred             --CCCCCceEEEEeeCCC---ccEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCCC----CEEEEEeC
Q 019672          131 --TVPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSNG----MYIATASE  194 (337)
Q Consensus       131 --~~~~~~~~~~~~~~~~---~~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~dg----~~lat~s~  194 (337)
                        ...+...+.++.++|+   +.++++++  .++.+.+|+......       .|..+|++++|+|++    ++|++|+.
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence              1123344566777665   67888887  488898887766543       144899999999998    89999999


Q ss_pred             CCcEEEEEEcCCC----------------------------------------------ceeEeeccCCcceeEEEEEee
Q 019672          195 QGTIIRVFLVSEA----------------------------------------------TKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       195 dg~~i~vwd~~~~----------------------------------------------~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      ||. |++||+.++                                              +.+..+.  .|...|++++|+
T Consensus       239 dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s  315 (351)
T 3f3f_A          239 DGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWN  315 (351)
T ss_dssp             TSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEEC--TTSSCEEEEEEC
T ss_pred             CCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEc
Confidence            998 699999875                                              3444443  245679999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      |+++   +|++++.||+|+||++..+..
T Consensus       316 ~~~~---~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          316 LTGT---ILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SSSC---CEEEEETTSCEEEEEECTTSC
T ss_pred             CCCC---EEEEecCCCcEEEEecCcCcc
Confidence            9999   999999999999999987643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.5e-28  Score=245.69  Aligned_cols=235  Identities=13%  Similarity=0.147  Sum_probs=193.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|.+.|++++|+|||++|++|+.++ ++|||+.+++.+.....  ..+..+.+.++++.++..+.       |+.|++|
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vw   82 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-------DFRIRVF   82 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-------TSEEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-------CCeEEEE
Confidence            46788999999999999999999887 69999999987766543  45677777777787776654       8999999


Q ss_pred             ECCCCCEEEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCC-eeeeeecCCCCCceEEEEeeCC-CccEEEEcC
Q 019672           81 NTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~la~~~  154 (337)
                      |+.+++.+..+. +...|.++.|+++.  ++++. |+.|++||+.++ .....+..+.  ..+.+++++| ++..+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--SCEEEEEEETTEEEEEEEEE
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--CcEEEEEEEcCCCCEEEEEe
Confidence            999999998887 45689999998875  44444 789999999876 5555665443  3567777777 677888887


Q ss_pred             CCCccEEEEEEccCCcccc------cCceEEEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEE
Q 019672          155 STTKGSVLVYNVMELHSHC------EAPLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~  226 (337)
                        .||.|++||+.+.....      ..++.+++|+|  ++.+|++++.||+ |++||+.+++.+..+..  +...|.+++
T Consensus       161 --~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v~~~~  235 (814)
T 3mkq_A          161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVSFAV  235 (814)
T ss_dssp             --TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCEEEEE
T ss_pred             --CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEE
Confidence              59999999998765432      27899999999  9999999999997 69999999998888753  356799999


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      |+|+++   +|++++.||+|++||+.+..
T Consensus       236 ~~~~~~---~l~~~~~dg~v~vwd~~~~~  261 (814)
T 3mkq_A          236 FHPTLP---IIISGSEDGTLKIWNSSTYK  261 (814)
T ss_dssp             ECSSSS---EEEEEETTSCEEEEETTTCS
T ss_pred             EcCCCC---EEEEEeCCCeEEEEECCCCc
Confidence            999999   99999999999999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.9e-28  Score=229.78  Aligned_cols=268  Identities=10%  Similarity=0.148  Sum_probs=191.4

Q ss_pred             CCCCC-eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYP-VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~-v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +|..+ ++++.|  ++++|++|+.++ +++||+.+++.+.....+.-.+.++.+.++..+++++      .|++|++||+
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s------~dg~i~vwd~  190 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS------TDRTVRVWDI  190 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEE------TTSCEEEEET
T ss_pred             CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEe------CCCCEEEEEC
Confidence            45555 577776  567899998877 6999999999887765544444444444332333333      5999999999


Q ss_pred             CCCCEEEEEE-cCCceeEEEEc--CC--eEEEEE-CCeEEEEECCCCeeee-----------------------eecCCC
Q 019672           83 TTGTALRELN-FLTSILAVRLN--KK--RLVIVL-REKTYIYDANTLAILD-----------------------TIDTVP  133 (337)
Q Consensus        83 ~~~~~~~~~~-~~~~v~~i~~~--~~--~~~v~~-d~~i~i~d~~~~~~~~-----------------------~~~~~~  133 (337)
                      ++++.+..+. +...|.++.++  ++  .++++. |+.|++||+++++...                       .+..  
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  268 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--  268 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC--
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC--
Confidence            9999888887 45689999886  33  344444 8999999998765322                       2222  


Q ss_pred             CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      +...+.+++++  +.++++++  .||.|++||+.+++..     |..+|.+++|+|+|++|++|+.||+ |++||+++++
T Consensus       269 ~~~~v~~~~~~--~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~  343 (464)
T 3v7d_B          269 HMASVRTVSGH--GNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGE  343 (464)
T ss_dssp             CSSCEEEEEEE--TTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTTTE
T ss_pred             ccceEEEEcCC--CCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCc
Confidence            23345566544  55888887  5999999999987754     3488999999999999999999998 6999999999


Q ss_pred             eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeee
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR  288 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  288 (337)
                      .+.++..  +...|.+++|+  ++   +|++++.||+|++||+.+......        . ..+...             
T Consensus       344 ~~~~~~~--h~~~v~~~~~~--~~---~l~s~s~dg~v~vwd~~~~~~~~~--------~-~~~~~~-------------  394 (464)
T 3v7d_B          344 LMYTLQG--HTALVGLLRLS--DK---FLVSAAADGSIRGWDANDYSRKFS--------Y-HHTNLS-------------  394 (464)
T ss_dssp             EEEEECC--CSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEEE--------E-ECTTCC-------------
T ss_pred             EEEEEeC--CCCcEEEEEEc--CC---EEEEEeCCCcEEEEECCCCceeee--------e-cCCCCc-------------
Confidence            9988853  45679999998  45   899999999999999986543210        0 000000             


Q ss_pred             eccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          289 NAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       289 ~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ..+.+.+++..+++++ ||.+++|++.+.
T Consensus       395 ~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          395 AITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             CEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             cEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            0111233446666666 999999988543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.9e-28  Score=215.82  Aligned_cols=248  Identities=9%  Similarity=0.095  Sum_probs=172.9

Q ss_pred             eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--CEEEEEE-cCCceeEEEEcC----CeEEEEE-CCeEEE
Q 019672           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--TALRELN-FLTSILAVRLNK----KRLVIVL-REKTYI  117 (337)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--~~~~~~~-~~~~v~~i~~~~----~~~~v~~-d~~i~i  117 (337)
                      ...+..+++.++++.++..+       .|++|+|||+..+  +++.++. |..+|.+++|++    +.++.+. |++|++
T Consensus         9 ~~~V~~~~~s~~g~~las~s-------~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            9 NEMIHDAVMDYYGKRMATCS-------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEE-------TTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             cCceEEEEECCCCCEEEEEe-------CCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            34566677777777776655       4999999999743  5666665 445899999964    3455555 899999


Q ss_pred             EECCCCe--eeeeecCCCCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCcc-------cccCceEEEEeCCC-
Q 019672          118 YDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHS-------HCEAPLAAIVLSSN-  185 (337)
Q Consensus       118 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~-------~~~~~i~~~~~s~d-  185 (337)
                      ||+++++  .+..+..+.  ..+.+++++|+  +.++++++  .||.|++||+++...       .|...|++++|+|+ 
T Consensus        82 Wd~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPMLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (297)
T ss_dssp             EEBSSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEE--TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred             EEcCCCceEEEEEeecCC--CceeEEEeCcCCCCcEEEEEE--CCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence            9998764  334444333  34666666665  67888887  599999999986531       24478999999997 


Q ss_pred             ------------CCEEEEEeCCCcEEEEEEcCCCc----eeEeeccCCcceeEEEEEeecCC---CcccEEEEEeCCCcE
Q 019672          186 ------------GMYIATASEQGTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM---QFQDILVATSSSGSL  246 (337)
Q Consensus       186 ------------g~~lat~s~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~fs~dg---~~~~~las~s~dg~v  246 (337)
                                  +++||+|+.||+ |+|||+++++    .+..+. + |...|.+|+|+|++   +   +||+++.|++|
T Consensus       158 ~~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~-~-H~~~V~~v~~sp~~~~~~---~las~s~D~~v  231 (297)
T 2pm7_B          158 IEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE-G-HSDWVRDVAWSPTVLLRS---YMASVSQDRTC  231 (297)
T ss_dssp             ------------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEEC-C-CSSCEEEEEECCCCSSSE---EEEEEETTSCE
T ss_pred             ccccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEec-C-CCCceEEEEECCCCCCce---EEEEEECCCcE
Confidence                        579999999998 6999998876    444553 2 46679999999995   6   99999999999


Q ss_pred             EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCCeeceEE
Q 019672          247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTL  326 (337)
Q Consensus       247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~  326 (337)
                      +|||++....+..    ...+.  .......+          ..+.+.++++.|++++.||.+++|+...+ +   .|..
T Consensus       232 ~iWd~~~~~~~~~----~~~~~--~~~~~~~v----------~~~~~s~~g~~las~~~D~~v~lw~~~~~-g---~w~~  291 (297)
T 2pm7_B          232 IIWTQDNEQGPWK----KTLLK--EEKFPDVL----------WRASWSLSGNVLALSGGDNKVTLWKENLE-G---KWEP  291 (297)
T ss_dssp             EEEEESSTTSCCE----EEESS--SSCCSSCE----------EEEEECSSSCCEEEEETTSCEEEEEECTT-S---CEEE
T ss_pred             EEEEeCCCCCccc----eeeee--cccCCCcE----------EEEEECCCCCEEEEEcCCCcEEEEEECCC-C---cEEe
Confidence            9999976432110    00000  00000112          22334566789999999999999998643 2   3666


Q ss_pred             eeee
Q 019672          327 DREF  330 (337)
Q Consensus       327 ~~~~  330 (337)
                      ..++
T Consensus       292 ~~~~  295 (297)
T 2pm7_B          292 AGEV  295 (297)
T ss_dssp             C---
T ss_pred             cccc
Confidence            5544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=9.8e-28  Score=214.23  Aligned_cols=228  Identities=11%  Similarity=0.113  Sum_probs=185.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+..+|++++|+|++++|++|+.++ +++||+.+++  .......  ..+..+.+.++.+.++..+       .|+.|++
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~~  167 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIAV  167 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-------CCCcEEE
Confidence            5778899999999999999998877 6999999886  3333332  3456666766667766554       3899999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ||+++++.+..+.. ...|.++.++++.  ++++. |+.|++||+++++.+..+..   ...+.+++++|++.++++++ 
T Consensus       168 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-  243 (337)
T 1gxr_A          168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-
T ss_pred             EeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEc-
Confidence            99999998888764 5589999998764  45555 88999999999988877653   23467778888888999887 


Q ss_pred             CCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          156 TTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                       .+|.|++||+.+.+..    +..+|.+++|+|+|++|++++.||. |++||+.+++.+....   +...|.+++|+|++
T Consensus       244 -~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~  318 (337)
T 1gxr_A          244 -ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDD  318 (337)
T ss_dssp             -TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTS
T ss_pred             -CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEec---CCCcEEEEEECCCC
Confidence             5899999999877643    3488999999999999999999997 6999999998875543   34579999999999


Q ss_pred             CcccEEEEEeCCCcEEEEec
Q 019672          232 QFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l  251 (337)
                      +   +|++++.||.|++|++
T Consensus       319 ~---~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          319 K---YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             C---EEEEEETTSCEEEEEE
T ss_pred             C---EEEEecCCCeEEEEEE
Confidence            9   9999999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=233.36  Aligned_cols=277  Identities=12%  Similarity=0.153  Sum_probs=199.1

Q ss_pred             CCeEEEEEcCCCC-EEEEE----------cCCc-eEEEeCCCCc---EEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCC
Q 019672            8 YPVFFVSFNQDNS-GFALS----------TKDG-FKIFDSSTGR---LCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus         8 ~~v~~~~fs~dg~-~la~g----------~~~g-~~vw~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .+|++++|+|+|+ +|++|          +.++ ++|||+.+++   .+... +...+..+.+.++...++..+      
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------   86 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL------   86 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE------
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc------
Confidence            4688999999997 88888          6665 6999998875   22222 234566777777777776654      


Q ss_pred             CCCceEEEEECCC----CCEEEEEE-cCCceeEEEEcCC---eEEEEE-CCeEEEEECCCCe------eeeee-cCCCCC
Q 019672           72 LSPRRLCLFNTTT----GTALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA------ILDTI-DTVPNL  135 (337)
Q Consensus        72 ~~d~~v~iwd~~~----~~~~~~~~-~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~~~------~~~~~-~~~~~~  135 (337)
                       .|+.|++||+.+    .+.+..+. +...|.++.|+++   .++++. |+.|++||+.+++      ....+ ....+.
T Consensus        87 -~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           87 -DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             -SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             -cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC
Confidence             389999999987    34666654 4568999999865   344444 8899999998876      32222 111233


Q ss_pred             ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCcccc-----------cCceEEEEeCCCC-CEEEEEeCCC---cEE
Q 019672          136 KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHC-----------EAPLAAIVLSSNG-MYIATASEQG---TII  199 (337)
Q Consensus       136 ~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~-----------~~~i~~~~~s~dg-~~lat~s~dg---~~i  199 (337)
                      ..+.+++++|+ +.++++++  .||.|++||+.+.+...           ..+|.+++|+|++ .+|++++.||   . |
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-i  242 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-I  242 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-C
T ss_pred             CCeeEEEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce-E
Confidence            45667777777 67888877  59999999998876432           4679999999997 6999999998   8 6


Q ss_pred             EEEEcCCC-ceeEeeccCCcceeEEEEEeec-CCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccccccccee
Q 019672          200 RVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  277 (337)
Q Consensus       200 ~vwd~~~~-~~~~~~~~~~~~~~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (337)
                      ++||++++ +.+..+..+ +...|.+++|+| +++   +|++++.||+|+|||+++.+....           +......
T Consensus       243 ~~~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~---~l~s~~~dg~v~~wd~~~~~~~~~-----------~~~~~~~  307 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQG-HQKGILSLDWCHQDEH---LLLSSGRDNTVLLWNPESAEQLSQ-----------FPARGNW  307 (416)
T ss_dssp             CEEETTSTTSCSBCCCSC-CSSCEEEEEECSSCSS---CEEEEESSSEEEEECSSSCCEEEE-----------EECSSSC
T ss_pred             EEEeCCCCCCCcEEeecC-ccCceeEEEeCCCCCC---eEEEEeCCCCEEEeeCCCCcccee-----------ecCCCCc
Confidence            99999987 444544312 456799999999 888   999999999999999987543221           0000001


Q ss_pred             ecccccceeeeeccCCCccc-CEEEEEEeCCcEEEEEEecCCC
Q 019672          278 VLDPADHHVLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      +          ..+.+.+++ ..|++++.||.+++|++...+.
T Consensus       308 v----------~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          308 C----------FKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             C----------CCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             e----------EEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            1          122334555 6899999999999999976543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=3.2e-28  Score=239.97  Aligned_cols=232  Identities=15%  Similarity=0.180  Sum_probs=182.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|...|++++|+|+|++|++|+.++ ++|||+.+++.+.....  ..+..+++.++.+.++.++       .|++|++|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-------~D~~i~iw  499 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS-------RDRTIKLW  499 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-------TTSCEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe-------CCCEEEEE
Confidence            36888999999999999999999887 69999999987766544  4566666666677766555       49999999


Q ss_pred             ECCCCCEEEEEE-----cCCceeEEEEcCCe----EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           81 NTTTGTALRELN-----FLTSILAVRLNKKR----LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        81 d~~~~~~~~~~~-----~~~~v~~i~~~~~~----~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      |..... ...+.     |...|.++.|+++.    ++.+. |+.|++||+++.+....+..|..  .+.+++++|++.++
T Consensus       500 d~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l  576 (694)
T 3dm0_A          500 NTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLC  576 (694)
T ss_dssp             CTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             ECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEE
Confidence            986543 33332     33469999998763    44444 89999999999988888865543  57778888889999


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc--------
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--------  218 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~--------  218 (337)
                      ++++  .||.|++||+.+++.+..    ..|.+++|+|++.+|++++.+ . |+|||+++++.+..+.....        
T Consensus       577 ~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          577 ASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEH-G-IKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETT-E-EEEEETTTTEEEEEECCCCC--------
T ss_pred             EEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCC-C-EEEEECCCCCChhhhccccccccccccc
Confidence            9988  599999999998876533    789999999999998887765 4 69999999988876642110        


Q ss_pred             ---------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          219 ---------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       219 ---------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                               ...+.+++|||||+   +|++|+.||+|+||++.
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~---~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGS---TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --------CCCCEEEEEECTTSS---EEEEEETTSEEEEEEC-
T ss_pred             cccccCCceeEEeeeEEEcCCCC---EEEEEcCCCeEEEEecc
Confidence                     01278999999999   99999999999999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.7e-27  Score=213.29  Aligned_cols=236  Identities=14%  Similarity=0.136  Sum_probs=181.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|..+|++++|+|||++|++|+.++ +++|+............  .......+....+.++..+       .|+.+++|
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-------~d~~~~~~  155 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS-------RDKTIKLW  155 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE-------TTSCEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec-------CCCeEEEE
Confidence            46788999999999999999999887 59999988876555433  3444555555666665544       48999999


Q ss_pred             ECCCCCEEEEE--EcCCceeEEEEcCC---eEEE-EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           81 NTTTGTALREL--NFLTSILAVRLNKK---RLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        81 d~~~~~~~~~~--~~~~~v~~i~~~~~---~~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      |..........  .+...+..+.++++   .+++ +. |+.|++||+++++.+..+..+..  .+.+++++|++.+++++
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~  233 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASG  233 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEE
Confidence            98766543322  23457888888643   2333 33 88999999999998888865543  57778888899999998


Q ss_pred             CCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-------CcceeE
Q 019672          154 ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-------TYPSTI  222 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-------~~~~~i  222 (337)
                      +  .||.|++||+.+.+....    ..|.+++|+|++.++ +++.|+. |+|||++++..+..+...       .+...|
T Consensus       234 s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          234 G--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             E--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             e--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            8  599999999998876533    789999999998755 5566887 699999998877766421       245579


Q ss_pred             EEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          223 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ++|+|+|||+   +|++|+.||+|+|||++++.
T Consensus       310 ~~l~~s~dg~---~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          310 TSLAWSADGQ---TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEECTTSS---EEEEEETTSCEEEEEEEC--
T ss_pred             EEEEECCCCC---EEEEEeCCCEEEEEeCCCcC
Confidence            9999999999   99999999999999998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=4.1e-28  Score=219.15  Aligned_cols=278  Identities=8%  Similarity=0.080  Sum_probs=201.0

Q ss_pred             CCCCCCCeEEEEEcCC---CCEEEEEcCCc-eEEEeCCC-CcEE-EEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            3 NQSSSYPVFFVSFNQD---NSGFALSTKDG-FKIFDSST-GRLC-YER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~d---g~~la~g~~~g-~~vw~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ..+|.++|++++|+|+   |++|++|+.++ +++||+.+ ++.+ ...  +...+..+.+.++.+.++.++       .|
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-------~d  107 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-------CD  107 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-------TT
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-------CC
Confidence            3578899999999999   69999999887 69999987 4443 333  345567777777777776655       48


Q ss_pred             ceEEEEECCCCCEEEEEEcCCceeEEEE--cCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           75 RRLCLFNTTTGTALRELNFLTSILAVRL--NKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~--~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +.|++||+++++.+....+..+|.++.|  +++.  ++++. |+.|++||+++++.+..+..+.   ...++.+.++  .
T Consensus       108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~--~  182 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIYP--M  182 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEETT--E
T ss_pred             CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecCC--e
Confidence            9999999999998888888889999999  7765  44444 8999999999998888876543   3555565544  4


Q ss_pred             EEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeCCCCCE----EEEEeCCCcEEEEEEcCCC---ceeEeecc
Q 019672          150 LAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMY----IATASEQGTIIRVFLVSEA---TKSYSFRR  215 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~----lat~s~dg~~i~vwd~~~~---~~~~~~~~  215 (337)
                      +++++  .++.+.+||+......       ....+.++++.+++..    +++++.||. |++||+...   +.+..+..
T Consensus       183 ~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~  259 (368)
T 3mmy_A          183 AVVAT--AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKC  259 (368)
T ss_dssp             EEEEE--GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEEC
T ss_pred             eEEEe--CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeee
Confidence            44444  3899999999875432       1256677777665554    999999997 699999887   44555532


Q ss_pred             CCc----------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccce
Q 019672          216 GTY----------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  285 (337)
Q Consensus       216 ~~~----------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  285 (337)
                      +..          ...|.+++|+|+++   +|++++.||.|+|||+.+......           +..          +.
T Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~s~~~dg~i~iwd~~~~~~~~~-----------~~~----------~~  315 (368)
T 3mmy_A          260 HRSNGTNTSAPQDIYAVNGIAFHPVHG---TLATVGSDGRFSFWDKDARTKLKT-----------SEQ----------LD  315 (368)
T ss_dssp             SEEC----CCCEEECCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEE-----------CCC----------CS
T ss_pred             eecccccccccccccceEEEEEecCCC---EEEEEccCCeEEEEECCCCcEEEE-----------ecC----------CC
Confidence            211          01599999999999   999999999999999986543221           110          00


Q ss_pred             eeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          286 VLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       286 ~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      ..+..+.+.+++.+|++++.||..+.|.+...+.
T Consensus       316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~  349 (368)
T 3mmy_A          316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNPQK  349 (368)
T ss_dssp             SCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred             CCceEEEECCCCCeEEEEecccccccccccCCCc
Confidence            1122334456678999999999777776654433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=8.2e-28  Score=224.52  Aligned_cols=268  Identities=12%  Similarity=0.114  Sum_probs=201.4

Q ss_pred             CCCCC-eEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYP-VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~-v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +|.+. +++++  ++|++|++|+.++ +++||+.+++.+.....+...+.++.++++.++..+       .|++|++||+
T Consensus       116 ~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~-------~dg~i~vwd~  186 (445)
T 2ovr_B          116 GHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS-------TDRTLKVWNA  186 (445)
T ss_dssp             CSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEE-------TTSCEEEEET
T ss_pred             ccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEe-------CCCeEEEEEC
Confidence            45665 46555  5688999998887 699999999988777655555556666677666554       4999999999


Q ss_pred             CCCCEEEEEEc-CCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           83 TTGTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        83 ~~~~~~~~~~~-~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      ++++.+..+.. ...|.++.++++.++++. |+.|++||+.+++.+..+..+..  .+.++++  ++.++++++  .||.
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~--~dg~  260 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--AVRCVQY--DGRRVVSGA--YDFM  260 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS--CEEEEEE--CSSCEEEEE--TTSC
T ss_pred             CcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc--cEEEEEE--CCCEEEEEc--CCCE
Confidence            99998888764 458999999999888887 89999999999988888875544  4666666  355778777  5999


Q ss_pred             EEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          161 VLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       161 v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                      |++||+.+++..     |..+|.+++|  ++++|++|+.||. |++||+++++.+..+..  +...+.++.++  ++   
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~~--~~---  330 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMELK--DN---  330 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEEE--TT---
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEEe--CC---
Confidence            999999887654     3488999999  7899999999998 69999999999888753  34567777764  66   


Q ss_pred             EEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          236 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      +|++++.||+|++||+.+...........        .....+          ..+.+  +++.|++++.||.+++|++.
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~~~v----------~~~~~--~~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCLQTLQGPN--------KHQSAV----------TCLQF--NKNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTT--------SCSSCE----------EEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEccCC--------CCCCCE----------EEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            89999999999999997654322100000        000001          11111  23789999999999999875


Q ss_pred             cC
Q 019672          316 IN  317 (337)
Q Consensus       316 ~~  317 (337)
                      ..
T Consensus       391 ~~  392 (445)
T 2ovr_B          391 TG  392 (445)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=6.3e-29  Score=224.53  Aligned_cols=233  Identities=12%  Similarity=0.151  Sum_probs=178.4

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEcc-CCCEEEEEeCCCCCCCCCce
Q 019672            5 SSSYPVFFVSFNQD----NSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLY-SSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         5 ~~~~~v~~~~fs~d----g~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .+...|++++|+|+    |++|++|+.++ +++||+.+++.+.....  ..+..+.+.+ +.+.++..+       .|++
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-------~dg~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS-------KDHA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE-------TTSC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe-------CCCe
Confidence            36688999999999    66899998887 69999999988776654  4456666666 556665554       4899


Q ss_pred             EEEEECCCCCEEEEE----EcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecC------------------
Q 019672           77 LCLFNTTTGTALREL----NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDT------------------  131 (337)
Q Consensus        77 v~iwd~~~~~~~~~~----~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~------------------  131 (337)
                      |++||+++++.+..+    .+...|.++.|+++.  ++++. |+.|++||+++++....+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999988887    356689999998764  44454 88999999988765443321                  


Q ss_pred             --------CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--------------c-----ccCceEEEEeCC
Q 019672          132 --------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------------H-----CEAPLAAIVLSS  184 (337)
Q Consensus       132 --------~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--------------~-----~~~~i~~~~~s~  184 (337)
                              ..+...+.+++++  +.++++++  .||.|++||+.+...              .     +..+|++++|+|
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  295 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKS--CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM  295 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--TTEEEEEC--SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred             ccCccccccCCcceEEEEEEc--CCEEEEEe--cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence                    0022334555555  44888887  599999999987643              1     226799999999


Q ss_pred             C--CCEEEEEeCCCcEEEEEEcCCCcee----EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          185 N--GMYIATASEQGTIIRVFLVSEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       185 d--g~~lat~s~dg~~i~vwd~~~~~~~----~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +  |++|++|+.||. |++||+.+++.+    ..+..+.+...|.+++|+|+++   +|++++.||.|+|||+.
T Consensus       296 ~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          296 DFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS---ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS---EEEEEETTSEEEEEEC-
T ss_pred             CCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC---eEEEEeCCCEEEEEEec
Confidence            9  999999999998 699999988643    3554332356799999999999   99999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=2.6e-27  Score=221.99  Aligned_cols=232  Identities=11%  Similarity=0.153  Sum_probs=182.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+|..+|++++|+|++ +|++|+.++ +++||+.+++.+.....  ..+..+.+.+.++ ..+++++      .|++|++
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s------~d~~i~v  231 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS------RDNTLHV  231 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE------TTSCEEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc------CCCcEEE
Confidence            4688999999999998 778887776 69999999988766643  4566666665333 2333333      5999999


Q ss_pred             EECCCCCEE-----------------------EEEE-cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCC
Q 019672           80 FNTTTGTAL-----------------------RELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN  134 (337)
Q Consensus        80 wd~~~~~~~-----------------------~~~~-~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~  134 (337)
                      ||+.+++..                       ..+. +...|.++..+++.++++. |+.|++||+++++.+..+..+. 
T Consensus       232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-  310 (464)
T 3v7d_B          232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-  310 (464)
T ss_dssp             EECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-
T ss_pred             eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence            999877633                       2222 3447888888888888887 8999999999999988886554 


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                       ..+.++.++|++.++++++  .||.|++||+.+++..     |..+|.+++|+  +++|++|+.||+ |++||+.+++.
T Consensus       311 -~~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~~  384 (464)
T 3v7d_B          311 -DRIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSR  384 (464)
T ss_dssp             -SCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCCE
T ss_pred             -CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCce
Confidence             4577777788888999888  5999999999988754     34889999998  579999999998 69999999887


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ...+.   +...+..++|+|+++   +|++|+ ||.|+|||+++++.
T Consensus       385 ~~~~~---~~~~~~~~~~~~~~~---~l~~~~-dg~i~iwd~~~g~~  424 (464)
T 3v7d_B          385 KFSYH---HTNLSAITTFYVSDN---ILVSGS-ENQFNIYNLRSGKL  424 (464)
T ss_dssp             EEEEE---CTTCCCEEEEEECSS---EEEEEE-TTEEEEEETTTCCE
T ss_pred             eeeec---CCCCccEEEEEeCCC---EEEEec-CCeEEEEECCCCcE
Confidence            76653   233567789999999   999998 89999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-27  Score=241.33  Aligned_cols=233  Identities=11%  Similarity=0.142  Sum_probs=174.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ++...|++++|+|++++||+|+.++ ++||+..+.+...... ...+..+.+.+ ...++.++       .|++|++||+
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s-------~D~~v~lWd~   86 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN-------AKDTVYVLSL   86 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE-------TTCEEEEEET
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE-------CcCeEEEEEC
Confidence            5778999999999999999999887 6999998877665543 24566677766 55455444       4999999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeee-ee--------cCCCCCceEEEEeeCCC-ccE
Q 019672           83 TTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILD-TI--------DTVPNLKGLCAFSPSLN-ACF  149 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~-~~~  149 (337)
                      ++++++..+.++..|.+++|+++.  ++++. |+.|++||+++++... .+        ....+...+.+++++|+ ...
T Consensus        87 ~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           87 YSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            999999999888899999998764  44444 8999999999886531 11        11123345667777775 356


Q ss_pred             EEEcCCCCccEEEEEEccCCcccc-----------------------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHC-----------------------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~-----------------------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +++++  .||.| +||+++.+...                       ...|++++|+|||++||+|+.||+ |++||+++
T Consensus       167 l~~g~--~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~  242 (902)
T 2oaj_A          167 VLISY--EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS  242 (902)
T ss_dssp             EEEEC--SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT
T ss_pred             EEEEe--CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC
Confidence            77766  59999 99998765431                       256999999999999999999998 69999999


Q ss_pred             CceeEe--ecc--CC------------cceeEEEEEee----cCCCcccEEEEEeCC-----CcEEEEec
Q 019672          207 ATKSYS--FRR--GT------------YPSTIFSLSFG----QSMQFQDILVATSSS-----GSLHVFSP  251 (337)
Q Consensus       207 ~~~~~~--~~~--~~------------~~~~i~~l~fs----~dg~~~~~las~s~d-----g~v~iw~l  251 (337)
                      ++.+..  +..  .+            +...|++++|+    ||+.  .+|++|+.|     .++++|++
T Consensus       243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~--~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT--SLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE--EEEEEEECSTTSSCCCEEEEEE
T ss_pred             CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC--EEEEeCCCCCCCCCceEEEEec
Confidence            987653  210  11            23469999996    4442  178888776     37888885

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-27  Score=240.23  Aligned_cols=293  Identities=11%  Similarity=0.044  Sum_probs=188.1

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCceEEEeCCCCcEEEEEee--------------------CCEEEEEEccCCCEEE
Q 019672            4 QSSSYPVFFVSFNQDN-SGFALSTKDGFKIFDSSTGRLCYERAV--------------------GAFSIVEMLYSSSLLA   62 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg-~~la~g~~~g~~vw~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~   62 (337)
                      ..+..+|++++|+|++ ..|++|+.++..+||+.+++.+.....                    ..+..+.+.+++..++
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la  227 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII  227 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence            4577899999999964 678888888744999999887665532                    2356666666666666


Q ss_pred             EEeCCCCCCCCCceEEEEECCCCCEEEEEEc-------------------CCceeEEEEc----CC--eEEEEE--C---
Q 019672           63 IVGAGEQPSLSPRRLCLFNTTTGTALRELNF-------------------LTSILAVRLN----KK--RLVIVL--R---  112 (337)
Q Consensus        63 ~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-------------------~~~v~~i~~~----~~--~~~v~~--d---  112 (337)
                      .++       .|++|++||+++++++.....                   ...|.+++|+    ++  .++++.  +   
T Consensus       228 sgs-------~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          228 TIH-------EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             EEE-------TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             EEE-------CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            554       499999999999987754211                   2257788773    33  222222  1   


Q ss_pred             --CeEEEEE-----------------------------------------------------------------------
Q 019672          113 --EKTYIYD-----------------------------------------------------------------------  119 (337)
Q Consensus       113 --~~i~i~d-----------------------------------------------------------------------  119 (337)
                        ..+.+|+                                                                       
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence              1455554                                                                       


Q ss_pred             CCCCeeeee-------ecCCCCCce--------------------------------EEEEeeCCCccEEEEcCCCCccE
Q 019672          120 ANTLAILDT-------IDTVPNLKG--------------------------------LCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus       120 ~~~~~~~~~-------~~~~~~~~~--------------------------------~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      +.++.....       +..+.....                                +..++++|++.++++++  .||+
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs--~Dgt  458 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH--SNGS  458 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE--TTSE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec--CCCc
Confidence            332211110       000000000                                11123357788999988  5999


Q ss_pred             EEEEEccCCcc----------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc----------------
Q 019672          161 VLVYNVMELHS----------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----------------  208 (337)
Q Consensus       161 v~i~d~~~~~~----------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~----------------  208 (337)
                      |++||+.++..                .|...|++|+|+|||++||+|+.||+ |+|||+.+++                
T Consensus       459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------
T ss_pred             EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCccccee
Confidence            99999987642                23468999999999999999999998 6999998763                


Q ss_pred             -----------------------------eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCC
Q 019672          209 -----------------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  259 (337)
Q Consensus       209 -----------------------------~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~  259 (337)
                                                   ++..+. + |...|++|+|||||    +||+|+.|++|+|||++.+.....
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~-h~~~V~svafSpdG----~lAsgs~D~tv~lwd~~~~~~~~~  611 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH-A-NKGKTSAINNSNIG----FVGIAYAAGSLMLIDRRGPAIIYM  611 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC-C-CSCSEEEEEECBTS----EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEEE-c-CCCcEEEEEecCCc----EEEEEeCCCcEEEEECCCCeEEEE
Confidence                                         234443 2 46789999999999    699999999999999865432110


Q ss_pred             CCccccccccccc-ccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          260 GGRTSSILGSILP-ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       260 ~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                          .. + ..+. .....+++.++.  +...-+.++++..|++++.||++++|++.+...+
T Consensus       612 ----~~-~-~~~~~gh~~~V~sv~Fs--~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g  665 (902)
T 2oaj_A          612 ----EN-I-REISGAQSACVTCIEFV--IMEYGDDGYSSILMVCGTDMGEVITYKILPASGG  665 (902)
T ss_dssp             ----EE-G-GGTCSSCCCCEEEEEEE--EEECTTSSSEEEEEEEEETTSEEEEEEEEECGGG
T ss_pred             ----ee-h-hHhccccccceEEEEEE--EEecCCCCCcceEEEEEecCCcEEEEEEecCCCC
Confidence                00 0 0010 111123333221  0000012233589999999999999999776433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.3e-28  Score=223.94  Aligned_cols=237  Identities=14%  Similarity=0.132  Sum_probs=185.7

Q ss_pred             CCCCCeEEEEEcCC----C---CEEEEEcCCc-eEEEeCCCCcE-----EEEEee-------CCEEEEEEc----cCCCE
Q 019672            5 SSSYPVFFVSFNQD----N---SGFALSTKDG-FKIFDSSTGRL-----CYERAV-------GAFSIVEML----YSSSL   60 (337)
Q Consensus         5 ~~~~~v~~~~fs~d----g---~~la~g~~~g-~~vw~~~~~~~-----~~~~~~-------~~~~~~~~~----~~~~~   60 (337)
                      .+..+|++++|+|+    |   ++|++|+.++ +++|++.+++.     +.....       ..+..+.+.    ++.+.
T Consensus        60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  139 (397)
T 1sq9_A           60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH  139 (397)
T ss_dssp             CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred             cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence            57889999999999    9   9999988776 69999988764     444432       456666776    66676


Q ss_pred             -EEEEeCCCCCCCCCceEEEEECCC------CCEEE-----EEE--------cCCceeEEEEcCCeEEEEE--CCeEEEE
Q 019672           61 -LAIVGAGEQPSLSPRRLCLFNTTT------GTALR-----ELN--------FLTSILAVRLNKKRLVIVL--REKTYIY  118 (337)
Q Consensus        61 -~~~~~~g~~~~~~d~~v~iwd~~~------~~~~~-----~~~--------~~~~v~~i~~~~~~~~v~~--d~~i~i~  118 (337)
                       ++.++       .|+.|++||+++      ++.+.     .+.        +...|.++.++++..+++.  ++.|++|
T Consensus       140 ~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          140 RLVATD-------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS  212 (397)
T ss_dssp             EEEEEE-------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEE
T ss_pred             EEEEEe-------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEE
Confidence             55444       489999999988      66555     554        3568999999987633322  7899999


Q ss_pred             ECCCCeeeeeecC---C-CCCceEEEEeeCCCccEEEEcCCCCc---cEEEEEEccCCccc------------------c
Q 019672          119 DANTLAILDTIDT---V-PNLKGLCAFSPSLNACFLAVPASTTK---GSVLVYNVMELHSH------------------C  173 (337)
Q Consensus       119 d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~la~~~~~~d---g~v~i~d~~~~~~~------------------~  173 (337)
                      |+++++.+..+..   + .+...+.+++++|++.++++++  .|   |.|++||+.+++..                  +
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH  290 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe--cCCCCceEEEEECCCCcccceeccCccccccccccccc
Confidence            9999988888875   3 0034577788888888999887  48   99999999876532                  4


Q ss_pred             cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC----Cc---------------ceeEEEEEeecCC---
Q 019672          174 EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG----TY---------------PSTIFSLSFGQSM---  231 (337)
Q Consensus       174 ~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~----~~---------------~~~i~~l~fs~dg---  231 (337)
                      ..+|.+++|+|+|++|++++.||. |+|||+.+++.+..+...    .+               ...|++++|+|++   
T Consensus       291 ~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~  369 (397)
T 1sq9_A          291 SSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  369 (397)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence            578999999999999999999997 699999999998888610    12               5679999999998   


Q ss_pred             -------CcccEEEEEeCCCcEEEEecCCC
Q 019672          232 -------QFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       232 -------~~~~~las~s~dg~v~iw~l~~~  254 (337)
                             +   +|++++.||.|+||+++++
T Consensus       370 ~~~~~~~~---~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          370 GMGADLNE---SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             STTCTTSC---EEEEEETTTEEEEEEEEC-
T ss_pred             cccccccc---eEEEecCCCcEEEEEcCCC
Confidence                   7   9999999999999998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=2.6e-27  Score=210.17  Aligned_cols=236  Identities=9%  Similarity=0.082  Sum_probs=177.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ..+...|++++|+|+|++|++|+.++ +++||+++++.+.....+...+..+.+.+..++..+       .++.+++|+.
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~-------~~~~~~~~~~  136 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS-------RSGHIHHHDV  136 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEE-------TTSEEEEEET
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEe-------cCCceEeeec
Confidence            45778899999999999999999887 599999999988887777666677777777766554       4899999998


Q ss_pred             CCCCE-EEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeee--cCCCCCceEEEEeeCCCcc-EE-EEc
Q 019672           83 TTGTA-LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNAC-FL-AVP  153 (337)
Q Consensus        83 ~~~~~-~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l-a~~  153 (337)
                      ..+.. +..+. +...+..+.+.++.  ++.+. |+.|++||+++++.....  ........+.++...+++. .+ ...
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence            87644 34444 44578888886653  44444 889999999876532211  1111222344444444332 22 223


Q ss_pred             CCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEe--CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          154 ASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      +. .++.|++||........    ...+..++|+|+++.+++++  .||+ |+|||+++++++.++. + |...|++|+|
T Consensus       217 ~~-~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~-g-H~~~V~~l~~  292 (318)
T 4ggc_A          217 GT-SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELK-G-HTSRVLSLTM  292 (318)
T ss_dssp             CT-TTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEEC-C-CSSCEEEEEE
T ss_pred             cC-CCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEc-C-CCCCEEEEEE
Confidence            33 68999999998776543    38899999999999888765  7888 6999999999999985 3 4678999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +|||+   +||+||.||+|+|||+..
T Consensus       293 spdg~---~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          293 SPDGA---TVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CTTSS---CEEEEETTTEEEEECCSC
T ss_pred             cCCCC---EEEEEecCCeEEEEECCC
Confidence            99999   999999999999999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-28  Score=219.50  Aligned_cols=257  Identities=14%  Similarity=0.111  Sum_probs=180.3

Q ss_pred             EcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC---------C
Q 019672           15 FNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT---------T   84 (337)
Q Consensus        15 fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~---------~   84 (337)
                      +.+|+.+|++|+.|+ +++||+.+++.+.......+.  .+.+.+. +  ++++     .|++|++|+..         +
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~--~~~~~~~-~--~s~s-----~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPR--TGGEHPA-I--ISRG-----PCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCC--TTCCCCS-E--EEEC-----STTEEEEEETTTEEEEEETTT
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCce--eeeeCCc-e--EEec-----CCCeEEEEEccCceEEeecCC
Confidence            446788899999887 599999999877665532222  2233444 2  3332     58999999654         6


Q ss_pred             CCEEEEEEcC--CceeEEEEcC--Ce--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           85 GTALRELNFL--TSILAVRLNK--KR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        85 ~~~~~~~~~~--~~v~~i~~~~--~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      ++.+..+...  .+|.++.+++  +.  ++.+. |+.|++||+++++.+.....+ ....+.+++++|++.++++++  .
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~--~  190 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYS--P  190 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC-SSCCCCEEEECTTSCEEEEEC--T
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCCceEEEEECCCCCEEEEEc--C
Confidence            6656555533  5799999988  43  44344 899999999998876555332 223466778888999999988  5


Q ss_pred             ccEEEEEEccCCccc-------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-cceeE--EEEEe
Q 019672          158 KGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTI--FSLSF  227 (337)
Q Consensus       158 dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-~~~~i--~~l~f  227 (337)
                      ||.|++||+++++..       |..+|++++|+|+|.+|++++++ + |++||+++++.+..+.... +...+  .+++|
T Consensus       191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T 3lrv_A          191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-T-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI  268 (343)
T ss_dssp             TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-B-EEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred             CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-e-EEEEEcCCCCcceeecccccccccccceEEEE
Confidence            999999999987654       55899999999999999999954 6 6999999988765543210 11223  36999


Q ss_pred             ecCCCcccEEEEEeC-CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCc---ccCEEEEE
Q 019672          228 GQSMQFQDILVATSS-SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV---KRASVSVI  303 (337)
Q Consensus       228 s~dg~~~~~las~s~-dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~l~~~  303 (337)
                      +|+|+   +|++++. |+.|+||++++....                     |..    .....+.+.+   +...++++
T Consensus       269 ~~~g~---~l~~~s~~d~~i~v~~~~~~~~~---------------------~~~----~~~~~~~~~~~~~~~~~l~~~  320 (343)
T 3lrv_A          269 DDSGK---NMIAYSNESNSLTIYKFDKKTKN---------------------WTK----DEESALCLQSDTADFTDMDVV  320 (343)
T ss_dssp             CTTSS---EEEEEETTTTEEEEEEECTTTCS---------------------EEE----EEEEECCC----CCCCEEEEE
T ss_pred             CCCCC---EEEEecCCCCcEEEEEEcccccc---------------------eEe----cCceeEecCccccccceeEEE
Confidence            99999   9999998 999999999754321                     111    0001111222   45789999


Q ss_pred             EeCCcEEEEEE
Q 019672          304 TYNGYFVEYIF  314 (337)
Q Consensus       304 ~~dg~~~~~~~  314 (337)
                      +.||.+.++-.
T Consensus       321 ~~d~~~~~~~~  331 (343)
T 3lrv_A          321 CGDGGIAAILK  331 (343)
T ss_dssp             EETTEEEEEEE
T ss_pred             ecCCceEEEEe
Confidence            99999988843

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-27  Score=223.77  Aligned_cols=230  Identities=10%  Similarity=0.070  Sum_probs=179.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc---EEEEEeeC------------------------------------
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYERAVG------------------------------------   47 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~---~~~~~~~~------------------------------------   47 (337)
                      ..|+.+++|+|||++|+++..+.+++||+.+++   .+.....+                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            368999999999999888888889999999988   54433211                                    


Q ss_pred             --------------------CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--CCCEEEEE---EcCCceeEEEE
Q 019672           48 --------------------AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALREL---NFLTSILAVRL  102 (337)
Q Consensus        48 --------------------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--~~~~~~~~---~~~~~v~~i~~  102 (337)
                                          .+..+++.++...++++++      .|++|++||+.  +++.+..+   .+...|.+++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEG------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEE
Confidence                                3555666667777655554      48999999999  88887776   45578999999


Q ss_pred             cCCe--EEEEE-CCeEEEEECCCCeeee----eecCCCCCceEEEEeeCCC---ccEEEEcCCCCccEEEEEEccCCccc
Q 019672          103 NKKR--LVIVL-REKTYIYDANTLAILD----TIDTVPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHSH  172 (337)
Q Consensus       103 ~~~~--~~v~~-d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~la~~~~~~dg~v~i~d~~~~~~~  172 (337)
                      +++.  ++++. ++.+++|++.+++...    .+..+.  ..+.+++++|+   +.++++++  .|+.|++||+.+++..
T Consensus       158 sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~--~d~~i~vwd~~~~~~~  233 (450)
T 2vdu_B          158 AEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIV  233 (450)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTTSCEEEEEEE--TTSCEEEEEESCTTCE
T ss_pred             cCCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCCCCcEEEEEc--CCCcEEEEECCCCcee
Confidence            8764  44444 7899999998876543    443333  35667777777   88888887  5899999999877543


Q ss_pred             ------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-----------------------CcceeEE
Q 019672          173 ------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----------------------TYPSTIF  223 (337)
Q Consensus       173 ------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-----------------------~~~~~i~  223 (337)
                            |..+|.+++|+ +|++|++++.||+ |+|||+.+++.+..+..+                       .....|.
T Consensus       234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence                  44889999999 9999999999997 699999999988777522                       1123589


Q ss_pred             EEEeecCCCcccEEEEEe-CCCcEEEEec
Q 019672          224 SLSFGQSMQFQDILVATS-SSGSLHVFSP  251 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s-~dg~v~iw~l  251 (337)
                      +++|+|+++   +|++++ .|+.|+||++
T Consensus       312 ~i~~~~~~~---~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          312 KIIKSKNLP---FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEECSSSS---EEEEEETTCSEEEEEEE
T ss_pred             EEEEeCCCC---EEEEEECCCCeEEEEEe
Confidence            999999999   899998 8999999999

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=6.9e-28  Score=232.84  Aligned_cols=234  Identities=12%  Similarity=0.100  Sum_probs=184.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCC----cEEEEEee--CC-EEEEEEcc--CCCEEEEEeCCCCCCCCCc
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG----RLCYERAV--GA-FSIVEMLY--SSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~----~~~~~~~~--~~-~~~~~~~~--~~~~~~~~~~g~~~~~~d~   75 (337)
                      .+.+.|++++|+|||++|++++++.++|||++++    +.......  .. +..+++.+  +.+.++..+       .|+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-------~dg   88 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-------ESG   88 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-------TTS
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-------CCC
Confidence            5678899999999999999999777899999988    66666544  34 66777777  667766654       489


Q ss_pred             eEEEEECCCC--------CEEEEEE-cCCceeEEEEcCCe--EEEEE-C----CeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           76 RLCLFNTTTG--------TALRELN-FLTSILAVRLNKKR--LVIVL-R----EKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        76 ~v~iwd~~~~--------~~~~~~~-~~~~v~~i~~~~~~--~~v~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                      +|++||+.++        +.+..+. +..+|.++.|+++.  ++++. +    +.|++||  .++.+..+..+.  ..+.
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~--~~v~  164 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS--QRIN  164 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS--SCEE
T ss_pred             EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC--ccEE
Confidence            9999999755        4555555 45689999998864  44444 3    4788888  456666666544  4577


Q ss_pred             EEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc-----ccC---ceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCce
Q 019672          140 AFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH-----CEA---PLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       140 ~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~-----~~~---~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      ++.++|++. ++++++  .||.|++||+.+.+..     |..   +|.+++|+|+ |++|++++.||. |++||+.+++.
T Consensus       165 ~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             EEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             EEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence            778888876 677776  5999999999887654     335   8999999999 999999999998 69999999999


Q ss_pred             eEeeccC--CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          210 SYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       210 ~~~~~~~--~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +..+...  .+...|.+++|+ +++   +|++++.|++|++||+.+.+.
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~---~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQ---KFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSS---EEEEEETTSEEEEEETTTTEE
T ss_pred             eEEecccccccCCceEEEEEc-CCC---EEEEEcCCCcEEEEECCCCcE
Confidence            8887331  245679999999 998   999999999999999986543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=9.4e-28  Score=214.49  Aligned_cols=239  Identities=12%  Similarity=0.108  Sum_probs=169.1

Q ss_pred             eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--EEEEE-cCCceeEEEEcC----CeEEEEE-CCeEE
Q 019672           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LRELN-FLTSILAVRLNK----KRLVIVL-REKTY  116 (337)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~i~~~~----~~~~v~~-d~~i~  116 (337)
                      +...+..+.+.++++.++..+       .|++|+|||+++++.  +..+. |..+|.+++|++    +.++.+. |++|+
T Consensus        12 H~~~V~~v~~s~~g~~lasgs-------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A           12 HEDMIHDAQMDYYGTRLATCS-------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             --CCEEEEEECGGGCEEEEEE-------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ccCeEEEeeEcCCCCEEEEEe-------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            345677777777778776655       499999999988753  44554 456899999963    4455555 89999


Q ss_pred             EEECCCCe--eeeeecCCCCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCcc--------cccCceEEEEeCC
Q 019672          117 IYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHS--------HCEAPLAAIVLSS  184 (337)
Q Consensus       117 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~--------~~~~~i~~~~~s~  184 (337)
                      +||+++++  .+..+..+...  +.+++++|+  +.++++++  .||.|++||+.....        .|...|.+++|+|
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~g~~lasgs--~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSS--VNSVCWAPHDYGLILACGS--SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSC--CCEEEECCTTTCSCEEEEC--SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             EEECCCCcceEEEEccCCCCc--eEEEEECCCCCCcEEEEEc--CCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            99998763  44555544443  444455554  77889888  599999999976521        2447899999999


Q ss_pred             C-----------------CCEEEEEeCCCcEEEEEEcCCC---ceeEeeccCCcceeEEEEEeecCC----CcccEEEEE
Q 019672          185 N-----------------GMYIATASEQGTIIRVFLVSEA---TKSYSFRRGTYPSTIFSLSFGQSM----QFQDILVAT  240 (337)
Q Consensus       185 d-----------------g~~lat~s~dg~~i~vwd~~~~---~~~~~~~~~~~~~~i~~l~fs~dg----~~~~~las~  240 (337)
                      +                 +++||+|+.|++ |+|||++++   +.+..+.  .|...|.+++|+|++    +   +||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~---~las~  234 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTS---TIASC  234 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCC---EEEEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCc---eEEEE
Confidence            8                 479999999998 699999765   3445553  245679999999997    6   89999


Q ss_pred             eCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          241 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       241 s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      +.|++|+||+++.......       ....+......+|          .+++.++++.|++++.||.+++|+...+
T Consensus       235 s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~v~----------~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNTW-------SPKLLHKFNDVVW----------HVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             ETTCEEEEEECSSTTCCCC-------BCCEEEECSSCEE----------EEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             cCCCeEEEEEccCccccch-------hhhhhhcCCCcEE----------EEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999999876321110       0001111111122          3334666789999999999999998643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=2.8e-29  Score=261.99  Aligned_cols=271  Identities=13%  Similarity=0.129  Sum_probs=210.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +..+|++++|+|+++++++|+.+| +++|++.+++.......  ..+..+.+.++++.++..+       .|++|++||+
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-------~dg~i~vwd~ 1032 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS-------EDSVIQVWNW 1032 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC-------SSSBEEEEET
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc-------CCCEEEEEEC
Confidence            356799999999999999999887 59999999887766543  3455566666667666554       4899999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           83 TTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      .+++......+...|.++.++++..+++.  |+.|++||+.+++.+..+..+..  .+.+++++|++.++++++  .||.
T Consensus      1033 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~s--~d~~ 1108 (1249)
T 3sfz_A         1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQG--TVLSCAISSDATKFSSTS--ADKT 1108 (1249)
T ss_dssp             TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSS--CCCCEEECSSSSSCEEEC--CSSC
T ss_pred             CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCC--cEEEEEECCCCCEEEEEc--CCCc
Confidence            99988766667779999999887665544  89999999999988888876544  455666677888999888  5999


Q ss_pred             EEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-------CCcceeEEEEEee
Q 019672          161 VLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-------GTYPSTIFSLSFG  228 (337)
Q Consensus       161 v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-------~~~~~~i~~l~fs  228 (337)
                      |++||+.++...     |..+|++++|+|||++||+|+.||+ |++||+.+++.+..+..       ..+...|++++||
T Consensus      1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A         1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp             CCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred             EEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEEeccccccccccccCceEEEEEEC
Confidence            999999887654     3488999999999999999999998 69999999987765410       1235569999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  308 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  308 (337)
                      |||+   +|++++  |+|++||+.++.....          + ......++          .+.+.+++.+|++++.||.
T Consensus      1188 ~dg~---~l~s~~--g~v~vwd~~~g~~~~~----------~-~~~~~~i~----------~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A         1188 PDSK---TLVSAG--GYLKWWNVATGDSSQT----------F-YTNGTNLK----------KIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp             TTSS---CEEEES--SSEEEBCSSSCBCCCC----------C-CCSSCCCC----------CCEECSSSCCEEEECTTCC
T ss_pred             CCCC---EEEECC--CeEEEEECCCCceeee----------e-eccCCccc----------EEEECCCCCEEEEecCCcE
Confidence            9999   898886  8999999987654321          0 00001111          2233566689999999999


Q ss_pred             EEEEEE
Q 019672          309 FVEYIF  314 (337)
Q Consensus       309 ~~~~~~  314 (337)
                      +++|++
T Consensus      1242 v~vw~l 1247 (1249)
T 3sfz_A         1242 LYILQV 1247 (1249)
T ss_dssp             EEEECC
T ss_pred             EEEEee
Confidence            999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.7e-27  Score=210.84  Aligned_cols=241  Identities=11%  Similarity=0.123  Sum_probs=188.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ..+..+|++++|+|++++|++++.++ +++||+.+++.+.... ...+..+.+.++.+.++..+..  ....++.|++||
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~g~i~~~d  148 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN--VMKNPGSINIYE  148 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECC--BTTBCCEEEEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCC--ccCCCCEEEEEE
Confidence            35788999999999999999998877 6999999998776654 3456667777777777666541  001138999999


Q ss_pred             CCCCCE-----------EEEEE-cCC--ceeEEEEcCCe--EEEEE-CCeEEEEECCC-CeeeeeecCCCCCceEEEEee
Q 019672           82 TTTGTA-----------LRELN-FLT--SILAVRLNKKR--LVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        82 ~~~~~~-----------~~~~~-~~~--~v~~i~~~~~~--~~v~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  143 (337)
                      +.++..           +..+. +..  .+.++.++++.  ++++. ++.|++||+++ .+.+..+..+.  ..+.++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~  226 (369)
T 3zwl_B          149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--KSISDMQF  226 (369)
T ss_dssp             EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS--SCEEEEEE
T ss_pred             ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC--CceeEEEE
Confidence            876542           22222 222  78899998764  44444 88999999998 67777776543  35677788


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCCc-------------EEEEEEcCC
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQGT-------------IIRVFLVSE  206 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg~-------------~i~vwd~~~  206 (337)
                      +|++.++++++  .||.|++||+.+++...    ..++.+++|+|+++++++++.++.             .+++||+.+
T Consensus       227 ~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  304 (369)
T 3zwl_B          227 SPDLTYFITSS--RDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF  304 (369)
T ss_dssp             CTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred             CCCCCEEEEec--CCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence            88888999887  58999999999877553    388999999999999999999882             369999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ++.+..+..  +...|.+++|+|+++   +|++++.||+|+||+++...
T Consensus       305 ~~~~~~~~~--~~~~v~~~~~s~~~~---~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          305 EEEIGRVQG--HFGPLNTVAISPQGT---SYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             CCEEEEEEC--CSSCEEEEEECTTSS---EEEEEETTSEEEEEEECHHH
T ss_pred             Ccchhheec--ccCcEEEEEECCCCC---EEEEEcCCCeEEEEECcccc
Confidence            999888853  356799999999999   99999999999999997643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=3.6e-27  Score=215.55  Aligned_cols=228  Identities=14%  Similarity=0.114  Sum_probs=176.1

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEee-----CCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      ++..+|++++|+| ++++|++|+.++ +++||+.+.. +.....     ..+..+.+.++.+.++..+       .|+.|
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~i  187 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGD-------STGRL  187 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEE-------TTSEE
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEEC-------CCCCE
Confidence            5888999999999 778899998877 6999998643 333221     3367777877778776655       48999


Q ss_pred             EEEECCCCCEEEEEE-cCCceeEEEEcCCe---EEEEE-CCeEEEEECCC----CeeeeeecCCCCCceEEEEeeCC-Cc
Q 019672           78 CLFNTTTGTALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANT----LAILDTIDTVPNLKGLCAFSPSL-NA  147 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~  147 (337)
                      ++||+ +++++..+. +...|.+++|+++.   ++++. |+.|++||+++    +..+..+.   +...+.+++++| ++
T Consensus       188 ~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~  263 (383)
T 3ei3_B          188 LLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDS  263 (383)
T ss_dssp             EEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTS
T ss_pred             EEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCC
Confidence            99999 567777776 45689999998874   44444 88999999987    55555552   344677888888 88


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccccc----------------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSHCE----------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~~~----------------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~  205 (337)
                      .++++++  .||.|++||+.+++....                      ..+..++|+|+|++  +|+.||+ |+|||+.
T Consensus       264 ~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~  338 (383)
T 3ei3_B          264 TKLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDAN  338 (383)
T ss_dssp             CEEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETT
T ss_pred             CEEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecC
Confidence            8999888  589999999987654211                      34555777777776  7789998 6999999


Q ss_pred             CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          206 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       206 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +++.+..+....+...+.+++|+|+++   +|++|+ ||+|+|||+++
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~---~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPNAAGIISLNKFSPTGD---VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTTBCSCCCEEEECTTSS---EEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCCCCceEEEEEEecCcc---EEEEec-CCcEEEEecCC
Confidence            999999886544456678889999999   999997 89999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=220.38  Aligned_cols=231  Identities=18%  Similarity=0.202  Sum_probs=174.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCC---CCcEEEEEeeCC--------------EEEEEEcc--CCCEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSS---TGRLCYERAVGA--------------FSIVEMLY--SSSLLAIV   64 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~---~~~~~~~~~~~~--------------~~~~~~~~--~~~~~~~~   64 (337)
                      .+..+|++++|+|++++|++|+.++ +++||++   +++.......+.              +..+...+  +.+.++..
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            4678999999999999999999887 5999984   555443322121              22222222  23343333


Q ss_pred             eCCCCCCCCCceEEEEECCCCCEEEEEEc---CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672           65 GAGEQPSLSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        65 ~~g~~~~~~d~~v~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                      +       .|++|++||+++++++..+..   ...|.+++|+++.  ++++. |+.|++||+++++.+..+... +...+
T Consensus       189 ~-------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v  260 (437)
T 3gre_A          189 T-------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG-DHAPI  260 (437)
T ss_dssp             E-------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT-TCEEE
T ss_pred             e-------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC-CCCce
Confidence            3       599999999999999998874   4689999998765  44444 889999999999888877532 23356


Q ss_pred             EEE----eeCCCccEEEEcCCCCccEEEEEEccCCccc-------------------------------ccCceEEEEeC
Q 019672          139 CAF----SPSLNACFLAVPASTTKGSVLVYNVMELHSH-------------------------------CEAPLAAIVLS  183 (337)
Q Consensus       139 ~~~----~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------------------------------~~~~i~~~~~s  183 (337)
                      .++    .+++++.++++++  .||.|++||+.+++..                               +..+|++++|+
T Consensus       261 ~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~  338 (437)
T 3gre_A          261 THVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS  338 (437)
T ss_dssp             EEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred             EEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence            666    4456788899887  5999999999876532                               33558999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-----------------------------------CcceeEEEEEee
Q 019672          184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----------------------------------TYPSTIFSLSFG  228 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-----------------------------------~~~~~i~~l~fs  228 (337)
                       ++++|++|+.||. |++||+.+++.+..+..+                                   .|...|++++|+
T Consensus       339 -~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~  416 (437)
T 3gre_A          339 -NDKILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTC  416 (437)
T ss_dssp             -TTEEEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEE
T ss_pred             -CceEEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeee
Confidence             7799999999997 699999999887766432                                   145679999999


Q ss_pred             cC--CCcccEEEEEeCCCcEEEEe
Q 019672          229 QS--MQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       229 ~d--g~~~~~las~s~dg~v~iw~  250 (337)
                      ++  +.   +|++|+.||+|+||+
T Consensus       417 ~~~~~~---~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          417 EVDETP---LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ESSSSE---EEEEEETTSCEEEEC
T ss_pred             ccCCce---EEEEEcCCceEEEeC
Confidence            98  66   999999999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.3e-27  Score=213.71  Aligned_cols=232  Identities=11%  Similarity=0.136  Sum_probs=173.7

Q ss_pred             CCCCCeEEEEEcCC---CCEEEEEcCCc-eEEEeCCCCc-EEEEEee--CCEEEEEE------ccCCCEEEEEeCCCCCC
Q 019672            5 SSSYPVFFVSFNQD---NSGFALSTKDG-FKIFDSSTGR-LCYERAV--GAFSIVEM------LYSSSLLAIVGAGEQPS   71 (337)
Q Consensus         5 ~~~~~v~~~~fs~d---g~~la~g~~~g-~~vw~~~~~~-~~~~~~~--~~~~~~~~------~~~~~~~~~~~~g~~~~   71 (337)
                      .+..+|++++|+|+   |++|++|+.++ +++||+.+++ .+.....  ..+..+.+      .++.+.++..+      
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~------  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS------  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE------
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEe------
Confidence            46789999999999   68999998776 6999999886 5544433  34554443      23345555444      


Q ss_pred             CCCceEEEEECCCCC-EEEEEEcC-----CceeEEE----EcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE
Q 019672           72 LSPRRLCLFNTTTGT-ALRELNFL-----TSILAVR----LNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~-~~~~~~~~-----~~v~~i~----~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                       .|+.|++||+++++ ++..+..+     ..+.++.    ++++  .++++. ++.|++||+++++...... +  ...+
T Consensus       137 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v  212 (357)
T 3i2n_A          137 -RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGV  212 (357)
T ss_dssp             -TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCE
T ss_pred             -CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCce
Confidence             48999999999887 66666432     2788887    4443  444455 7899999999988755433 2  3356


Q ss_pred             EEEeeCC---CccEEEEcCCCCccEEEEEEccCCcc----------cccCceEEEEeCCCCC-EEEEEeCCCcEEEEEEc
Q 019672          139 CAFSPSL---NACFLAVPASTTKGSVLVYNVMELHS----------HCEAPLAAIVLSSNGM-YIATASEQGTIIRVFLV  204 (337)
Q Consensus       139 ~~~~~~~---~~~~la~~~~~~dg~v~i~d~~~~~~----------~~~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~  204 (337)
                      .++.++|   ++.++++++  .||.|++||+.+.+.          .|..+|++++|+|+++ +|++++.||. |++||+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~  289 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKY  289 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEE
T ss_pred             EEEEcCCCCCCCCEEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeec
Confidence            7777777   788888887  599999999987653          2458899999999999 8999999997 699999


Q ss_pred             CCCc-------------------eeEeeccCCcceeEEEEEeecCCCcccEEE-EEeCCCcEEEEecCCC
Q 019672          205 SEAT-------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILV-ATSSSGSLHVFSPGFA  254 (337)
Q Consensus       205 ~~~~-------------------~~~~~~~~~~~~~i~~l~fs~dg~~~~~la-s~s~dg~v~iw~l~~~  254 (337)
                      +++.                   .+..+.  .+...|.+++|+|+++   +|+ +++.||+|+|||+.+.
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~---~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKR---GLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             ECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSST---TEEEEEETTSEEEEEEECC-
T ss_pred             CCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCC---eEEEEecCCCcEEEEECCCc
Confidence            8653                   344443  2356799999999999   787 8999999999999754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=4.6e-26  Score=227.65  Aligned_cols=237  Identities=11%  Similarity=0.112  Sum_probs=184.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+..+|++++|+|++++|++|+.++ ++|||+.+++.+.....  ..+..+.+.++.+.++.++       .|++|++||
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~vw~  125 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-------DDLTVKLWN  125 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-------TTSEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc-------CCCEEEEEE
Confidence            5788999999999999999999887 59999999988766654  4466666766777766554       489999999


Q ss_pred             CCCC-CEEEEEE-cCCceeEEEEcC-Ce--EEEEE-CCeEEEEECCCCeeeeeecCCC-CCceEEEEeeCCCccEEEEcC
Q 019672           82 TTTG-TALRELN-FLTSILAVRLNK-KR--LVIVL-REKTYIYDANTLAILDTIDTVP-NLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        82 ~~~~-~~~~~~~-~~~~v~~i~~~~-~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~  154 (337)
                      +.++ .....+. +..+|.++.|++ +.  ++++. |+.|++||+.+++....+..+. .....+++++.+++.++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            9987 4445554 456899999998 44  33344 8999999998887766665443 333444555545888999988


Q ss_pred             CCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          155 STTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                        .||.|++||+.+++..     |..+|.+++|+|+|++|++++.||. |++||+.+++.+..+..+  ...+.+++|+|
T Consensus       206 --~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~  280 (814)
T 3mkq_A          206 --DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVG--LERSWCIATHP  280 (814)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCS--SSSEEEEEECT
T ss_pred             --CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecC--CCcEEEEEEcc
Confidence              5999999999887654     3478999999999999999999998 699999999998887543  45799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +|+  ..+++++.++.+.+|++....
T Consensus       281 ~~~--~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          281 TGR--KNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             TCG--GGEEEEEETTEEEEEECSCCS
T ss_pred             CCC--ceEEEEEeCCCEEEEEcCCCC
Confidence            986  233555567778999986543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.2e-26  Score=209.49  Aligned_cols=235  Identities=13%  Similarity=0.089  Sum_probs=179.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEE-eeCCEEEEEEccCC--CEEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-AVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+..+|++++|+|++++|++|+.++ +++||+.+++.+... +...+..+.+.+++  +.++..+       .|+.|++|
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-------~dg~i~vw  156 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS-------WDKTLKFW  156 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEE-------TTSEEEEE
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEcc-------CCCcEEEE
Confidence            5788999999999999999999887 699999998766543 23456666663244  3344333       48999999


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeee-cC-CCCCceEEEEeeCCCc--cEEEEcCC
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTI-DT-VPNLKGLCAFSPSLNA--CFLAVPAS  155 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~--~~la~~~~  155 (337)
                      |+++++++..+..+..+.++.+.++.++++. ++.+.+|+++........ .. ........++.+++..  ..+++++ 
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  235 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-  235 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-
Confidence            9999999999999889999999888887777 889999999876433222 21 1223334455544332  2367766 


Q ss_pred             CCccEEEEEEccCCcc---c-----ccC------------ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          156 TTKGSVLVYNVMELHS---H-----CEA------------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~---~-----~~~------------~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                       .||.|++||+.....   .     +..            +|++++|+|+|++||+|+.||. |++||+.+++.+..+..
T Consensus       236 -~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          236 -IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             -TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCC
T ss_pred             -CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecC
Confidence             599999999987632   1     112            7999999999999999999998 69999999999888853


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                        +...|.+++|+|+|+   +|++++.|+..+.|++-..
T Consensus       314 --~~~~v~~~~~s~~g~---~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          314 --LDQPISACCFNHNGN---IFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             --CSSCEEEEEECTTSS---CEEEEECCCSTTCGGGCCT
T ss_pred             --CCCCceEEEECCCCC---eEEEEecccccccccccCC
Confidence              356799999999999   9999999987776665433

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.7e-26  Score=200.37  Aligned_cols=229  Identities=10%  Similarity=0.106  Sum_probs=173.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC---cEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG---RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+..+|++++|+|++++|++|+.++ +++|++...   +.+.....+...+..+.++++.++..+       .|+.|++|
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-------~d~~i~~~  129 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGS-------WDKTAKVW  129 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEE-------TTSEEEEE
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEe-------CCCCEEEE
Confidence            4678999999999999999999887 599997654   334444444444445555777766555       48999999


Q ss_pred             ECCCCCEEEEEEc-CCceeEEEEc---CCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           81 NTTTGTALRELNF-LTSILAVRLN---KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~---~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      |  .++.+..+.. ..++.++.+.   ++.++++. |+.|++||.  .+....+.. .+...+.++.+++++. +++++ 
T Consensus       130 d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~-  202 (313)
T 3odt_A          130 K--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSG-IHNDVVRHLAVVDDGH-FISCS-  202 (313)
T ss_dssp             E--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECS-SCSSCEEEEEEEETTE-EEEEE-
T ss_pred             c--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEec-cCcccEEEEEEcCCCe-EEEcc-
Confidence            9  5666666654 4588888874   45566665 889999994  445555544 1234566666666766 66666 


Q ss_pred             CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                       .||.|++||+.+++..     |..+|++++|+|+| .|++++.||. |++||+.+++.+..+..  +...|.+++|+|+
T Consensus       203 -~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~  277 (313)
T 3odt_A          203 -NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITL--PAISIWSVDCMSN  277 (313)
T ss_dssp             -TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEEC--SSSCEEEEEECTT
T ss_pred             -CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEec--cCceEEEEEEccC
Confidence             4899999999987754     34889999999999 5899999997 69999999999888853  3457999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          231 MQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ++    +++++.||.|+|||+++...
T Consensus       278 ~~----~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          278 GD----IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             SC----EEEEETTSCEEEEESCGGGC
T ss_pred             CC----EEEEeCCCcEEEEeCCCCce
Confidence            97    56799999999999987644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.9e-27  Score=236.55  Aligned_cols=240  Identities=12%  Similarity=0.148  Sum_probs=179.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCC--cEEEEEee--CCEEEEEEccC--CCEEEEEeCCCCCCCCCc
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~--~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+|.++|++++|+|+|++|++|+.+| ++|||+.++  +.+.....  ..+..+.+.++  ++.++.++       .|+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s-------~Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-------YDG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE-------TTS
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe-------CCC
Confidence            457999999999999999999998887 699998743  44444433  45666666665  56665554       499


Q ss_pred             eEEEEECCCCC--EEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC--
Q 019672           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL--  145 (337)
Q Consensus        76 ~v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (337)
                      +|++||+.+++  .+..+. +..+|.++.|+++    .+++++ |+.|++||++++..........+...+.++.++|  
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  444444 4568999999875    355555 8999999998774333322223445677777777  


Q ss_pred             -----------CccEEEEcCCCCccEEEEEEccCCcc---------cccCceEEEEeCCC---CCEEEEEeCCCcEEEEE
Q 019672          146 -----------NACFLAVPASTTKGSVLVYNVMELHS---------HCEAPLAAIVLSSN---GMYIATASEQGTIIRVF  202 (337)
Q Consensus       146 -----------~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~~~i~~~~~s~d---g~~lat~s~dg~~i~vw  202 (337)
                                 ++.++++++  .||.|++||+.+...         .|..+|++++|+|+   |++|++|+.||+ |++|
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iw  234 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  234 (753)
T ss_dssp             ---------CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEE
T ss_pred             cccccccccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEe
Confidence                       477888887  599999999987632         13488999999999   999999999998 6999


Q ss_pred             EcCCCceeE---eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          203 LVSEATKSY---SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       203 d~~~~~~~~---~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      |+.+++...   ......+...|++++|+|+|+   +|++++.||.|+||++....
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC---CEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCCCcceeEEeccCCCCCceEEEEEcCCCC---EEEEEcCCCEEEEEecCCCC
Confidence            999874211   111222456799999999999   99999999999999998643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-26  Score=206.90  Aligned_cols=242  Identities=9%  Similarity=0.077  Sum_probs=175.2

Q ss_pred             EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--CCCEEEEEE-cCCceeEEEEcC----CeEEEEE-CCe
Q 019672           43 ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALRELN-FLTSILAVRLNK----KRLVIVL-REK  114 (337)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--~~~~~~~~~-~~~~v~~i~~~~----~~~~v~~-d~~  114 (337)
                      ..+...+..+++.++.+.++..+       .|+.|++||+.  +++.+..+. +..+|.++.|++    +.++++. |+.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCS-------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEE-------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCCcccEEEEEEcCCCCEEEEEE-------CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            34446677777777777776655       38999999998  445555665 445899999973    4555555 899


Q ss_pred             EEEEECCCCe--eeeeecCCCCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeC
Q 019672          115 TYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLS  183 (337)
Q Consensus       115 i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s  183 (337)
                      |++||+.+++  .+..+..+  ...+.+++++|+  +.++++++  .||.|++||+.+....       +..+|.+++|+
T Consensus        81 v~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~  156 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA  156 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred             EEEEEcCCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence            9999999886  45555443  345777777777  78888887  5999999999876322       34889999999


Q ss_pred             C-------------CCCEEEEEeCCCcEEEEEEcCCCcee----EeeccCCcceeEEEEEeecC---CCcccEEEEEeCC
Q 019672          184 S-------------NGMYIATASEQGTIIRVFLVSEATKS----YSFRRGTYPSTIFSLSFGQS---MQFQDILVATSSS  243 (337)
Q Consensus       184 ~-------------dg~~lat~s~dg~~i~vwd~~~~~~~----~~~~~~~~~~~i~~l~fs~d---g~~~~~las~s~d  243 (337)
                      |             ++++|++++.||. |++||+++++..    ..+.  .|...|.+++|+|+   ++   +|++++.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~---~l~s~~~d  230 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRS---YLASVSQD  230 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSE---EEEEEETT
T ss_pred             CccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCC---eEEEEeCC
Confidence            9             7999999999998 699999877533    3332  24567999999999   77   99999999


Q ss_pred             CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          244 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       244 g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      |+|+|||+.....+..    ..    ...        ...+...+..+.+.++++.|++++.||.+++|+++..
T Consensus       231 g~i~iwd~~~~~~~~~----~~----~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWK----KT----LLK--------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             SCEEEEEESSTTSCCE----EE----ESS--------SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CEEEEEeCCCCCccce----ee----eec--------cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            9999999987543210    00    000        0000011122334566689999999999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=1.5e-26  Score=215.46  Aligned_cols=228  Identities=12%  Similarity=0.239  Sum_probs=179.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .++..+|++++|  ++++|++|+.++ +++||+.+++.+.....+...+..+.++++.++.++       .|++|++||+
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-------~dg~i~vwd~  240 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS-------KDRSIAVWDM  240 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE-------TTSCEEEEEC
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEee-------CCCcEEEEeC
Confidence            467889999999  788999998887 699999999988777666556667777777666554       4899999999


Q ss_pred             CCCCEE---EEE-EcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 TTGTAL---REL-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 ~~~~~~---~~~-~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      .+++.+   ..+ .+...|.++.++++.++++. |+.|++||+++++.+..+..+..  .+.++.++  +.++++++  .
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~~g~--~  314 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYR--DRLVVSGS--S  314 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEE--TTEEEEEE--T
T ss_pred             CCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC--cEEEEEeC--CCEEEEEe--C
Confidence            988765   233 34458999999888888887 89999999999999888876544  56666664  34788877  5


Q ss_pred             ccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc---------eeEeeccCCcceeEE
Q 019672          158 KGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---------KSYSFRRGTYPSTIF  223 (337)
Q Consensus       158 dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~---------~~~~~~~~~~~~~i~  223 (337)
                      ||.|++||+.+++..     |..+|.+++|  ++++|++|+.||. |++||+.+++         .+..+.  .|...|.
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~  389 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVF  389 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCC
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeecc--CCCCCeE
Confidence            999999999987754     3488999999  7889999999998 6999997766         666664  2456799


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +++|  +++   +|++++.||+|+|||+.....
T Consensus       390 ~l~~--~~~---~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          390 RLQF--DEF---QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEE--CSS---CEEECCSSSEEEEEC------
T ss_pred             EEEe--CCC---EEEEEeCCCEEEEEECCCCCC
Confidence            9999  677   899999999999999976543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.7e-26  Score=207.19  Aligned_cols=230  Identities=13%  Similarity=0.093  Sum_probs=179.8

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCCc-eEEEeC-CCCcEEEE-E--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            5 SSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDS-STGRLCYE-R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~-~la~g~~~g-~~vw~~-~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .+..+|++++|+|+++ +|++|+.++ +++||+ .+++...- .  +...+..+.+.+ .+.++..+       .|+.|+
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~-------~d~~i~  125 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAAS-------WDGLIE  125 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE-------TTSEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEc-------CCCeEE
Confidence            4678999999999999 999998776 699999 88765322 2  334566666666 66666554       489999


Q ss_pred             EEECCC---------CCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCC-CeeeeeecCCCCCceEEEEeeCC-C
Q 019672           79 LFNTTT---------GTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSL-N  146 (337)
Q Consensus        79 iwd~~~---------~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  146 (337)
                      +||+++         ++++..+.+...|.++.++++.++++. ++.|++||+++ +..............+.+++++| +
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC
Confidence            999987         777766777789999999999977776 88999999987 54322211122334577888888 8


Q ss_pred             ccEEEEcCCCCccEEEEEEccCC------ccc-----ccC---------ceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          147 ACFLAVPASTTKGSVLVYNVMEL------HSH-----CEA---------PLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~------~~~-----~~~---------~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      +.++++++  .+|.|++||+...      +..     +..         +|.+++|+|+|++|++++.||. |++||+.+
T Consensus       206 ~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~  282 (342)
T 1yfq_A          206 QEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT  282 (342)
T ss_dssp             GCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT
T ss_pred             CCEEEEEe--cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc
Confidence            88999888  5999999999776      222     212         8999999999999999999998 69999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc-EEEEec
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-LHVFSP  251 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~-v~iw~l  251 (337)
                      ++.+..+. ++|...|.+++  |+++   +|++++.||+ .+.|..
T Consensus       283 ~~~~~~~~-~~h~~~v~~~~--~~~~---~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          283 RKKIKNFA-KFNEDSVVKIA--CSDN---ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TEEEEECC-CCSSSEEEEEE--ECSS---EEEEEEECTHHHHCSSS
T ss_pred             HhHhhhhh-cccCCCceEec--CCCC---eEEEEecCCcccccccc
Confidence            99988875 33367899999  9999   9999999998 665554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-27  Score=227.25  Aligned_cols=238  Identities=11%  Similarity=0.081  Sum_probs=164.9

Q ss_pred             CCCCeEEEEEcCC------CCEEEEEcCCc-eEEEeCCCCcEE-----------EEEee--CCEEEEEEccCCCEEEEEe
Q 019672            6 SSYPVFFVSFNQD------NSGFALSTKDG-FKIFDSSTGRLC-----------YERAV--GAFSIVEMLYSSSLLAIVG   65 (337)
Q Consensus         6 ~~~~v~~~~fs~d------g~~la~g~~~g-~~vw~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~~   65 (337)
                      +.+.|++++|+|+      +.+||+|+.|+ ++|||+.+++..           .....  ..+..+++.. .+.++ ++
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~~~la-sg  283 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVV-CG  283 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-SSEEE-EE
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-CCeEE-EE
Confidence            4578999999997      57899888877 699999766321           12222  3445555543 24433 33


Q ss_pred             CCCCCCCCCceEEEEECCCCC-EEEEEE-cCCceeEE--EEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCCCce
Q 019672           66 AGEQPSLSPRRLCLFNTTTGT-ALRELN-FLTSILAV--RLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (337)
Q Consensus        66 ~g~~~~~~d~~v~iwd~~~~~-~~~~~~-~~~~v~~i--~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (337)
                      +      .|++|++||+++++ +...+. |...|.+|  .++++.   ++.++ |++|+|||+++++.+..+..+.....
T Consensus       284 s------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          284 F------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             E------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             e------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence            3      59999999998764 344454 45689999  456643   34444 89999999998776555543322122


Q ss_pred             EEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc----
Q 019672          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----  208 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~----  208 (337)
                      +.+++++|++..+++++  .|++|++||++++...     |.++|++|+|||+|++||+|+.||+ |+|||+..+.    
T Consensus       358 v~~v~fsp~~~~l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~  434 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGI  434 (524)
T ss_dssp             CCCEEEETTTTEEEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC
T ss_pred             ccceEeCCCcCeEEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhcccc
Confidence            44556677777888877  4899999999987643     4589999999999999999999998 6999864220    


Q ss_pred             ----------eeEeec----------------------------cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          209 ----------KSYSFR----------------------------RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       209 ----------~~~~~~----------------------------~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                                .+..+.                            ...+...|.+|+|||+++...+||+|+.||+|+||+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence                      111110                            001234589999999942112899999999999999


Q ss_pred             cCCC
Q 019672          251 PGFA  254 (337)
Q Consensus       251 l~~~  254 (337)
                      +..+
T Consensus       515 l~~~  518 (524)
T 2j04_B          515 LSLE  518 (524)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=5.6e-26  Score=201.43  Aligned_cols=234  Identities=12%  Similarity=0.114  Sum_probs=153.8

Q ss_pred             eEEEEEcCCCC---EEEEEcCCceEEEeCCCC---cEEEEEeeCCEEEEEEcc-------------------------CC
Q 019672           10 VFFVSFNQDNS---GFALSTKDGFKIFDSSTG---RLCYERAVGAFSIVEMLY-------------------------SS   58 (337)
Q Consensus        10 v~~~~fs~dg~---~la~g~~~g~~vw~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~~   58 (337)
                      +.++-|-.-|-   +++++++..+++|+..+.   ++++..+.+.+.+..+.+                         ++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence            55666655443   789999999999998888   788887766544433333                         33


Q ss_pred             C----EEEEEeCCCC---------------CCCCCceEEEEEC-CCCCEEEEEEcC-CceeEEEEcC-----CeEEEEE-
Q 019672           59 S----LLAIVGAGEQ---------------PSLSPRRLCLFNT-TTGTALRELNFL-TSILAVRLNK-----KRLVIVL-  111 (337)
Q Consensus        59 ~----~~~~~~~g~~---------------~~~~d~~v~iwd~-~~~~~~~~~~~~-~~v~~i~~~~-----~~~~v~~-  111 (337)
                      +    ...++++|..               ....|++|++|++ ..|+.+..+..+ ..+..++|++     ..++.++ 
T Consensus       122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~  201 (356)
T 2w18_A          122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI  201 (356)
T ss_dssp             ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred             CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence            3    2222221100               0013888999998 447766665444 3555556654     3444444 


Q ss_pred             CCeEEEEECCCCeeeeeecCCCC-CceEEEEeeCCCccEEEE-----------cCCCCccEEEEEEccCCcccc------
Q 019672          112 REKTYIYDANTLAILDTIDTVPN-LKGLCAFSPSLNACFLAV-----------PASTTKGSVLVYNVMELHSHC------  173 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~-----------~~~~~dg~v~i~d~~~~~~~~------  173 (337)
                      |++|+|||+++++.++++..+.. ...+++++++|++.++++           .|+ .|++|++||..+++...      
T Consensus       202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCCCEEEEEEEeec
Confidence            99999999999999999875432 234555555666766532           233 59999999999886532      


Q ss_pred             ----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672          174 ----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF  249 (337)
Q Consensus       174 ----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw  249 (337)
                          ...+.+..+  +|.++|+|+.||+ |||||+.+|+.+.++. +++...+.+++|||||+   +|++|+.|++|+||
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgT-IkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~---~LaSGS~D~TIklW  353 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGT-IAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDS---HLLAGQKDGNIFVY  353 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSC-EEEEETTTCSEEEEEC-CC--CCCCEEEECSSSS---EEEEECTTSCEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCc-EEEEECCCCcEEEEec-CCCCCeEEEEEECCCCC---EEEEEECCCcEEEe
Confidence                112222222  3568999999998 6999999999999985 33333355689999999   99999999999999


Q ss_pred             ec
Q 019672          250 SP  251 (337)
Q Consensus       250 ~l  251 (337)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.7e-26  Score=212.76  Aligned_cols=236  Identities=9%  Similarity=0.110  Sum_probs=179.4

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCC-------cEEEEE--eeCCEEEEEEccCC-CEEEEEeCCCCCC
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTG-------RLCYER--AVGAFSIVEMLYSS-SLLAIVGAGEQPS   71 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~-------~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~g~~~~   71 (337)
                      .+|..+|++++|+| ++++|++|+.++ ++|||+.++       +.+...  +...+..+.+.++. +.++..+      
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~------  151 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG------  151 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE------
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc------
Confidence            46889999999999 999999999887 699999887       333333  33456666666665 4555444      


Q ss_pred             CCCceEEEEECCCCCEEEEE--E-cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeee-cCCCCCceEEEEeeC
Q 019672           72 LSPRRLCLFNTTTGTALREL--N-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPS  144 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~--~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~  144 (337)
                       .|++|++||+++++.+..+  . +...|.++.|+++.  ++++. |+.|++||+++++.+..+ ..+... .+..+.++
T Consensus       152 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~  229 (402)
T 2aq5_A          152 -CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RPVHAVFV  229 (402)
T ss_dssp             -TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SCCEEEEC
T ss_pred             -CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cceEEEEc
Confidence             4899999999999998888  3 45689999998754  55554 899999999999988887 444332 24555667


Q ss_pred             CCccEEEEc---CCCCccEEEEEEccCCccc-------ccCceEEEEeCCCCCEEEE-EeCCCcEEEEEEcCCCce-eEe
Q 019672          145 LNACFLAVP---ASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMYIAT-ASEQGTIIRVFLVSEATK-SYS  212 (337)
Q Consensus       145 ~~~~~la~~---~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat-~s~dg~~i~vwd~~~~~~-~~~  212 (337)
                      +++.+++++   +  .|+.|++||+.+....       +...|.+++|+|+|++|++ |+.||. |++||+.+++. +..
T Consensus       230 ~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          230 SEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHY  306 (402)
T ss_dssp             STTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEE
T ss_pred             CCCcEEEEeccCC--CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEe
Confidence            788888887   4  4899999999886541       2377999999999999975 557997 69999999884 444


Q ss_pred             eccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          213 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       213 ~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +....+...|.+++|+|++.   ++++  .++.+++|++....
T Consensus       307 l~~~~~~~~v~~~~~sp~~~---~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRG---LEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGG---SCGG--GTEEEEEEEEETTE
T ss_pred             ecccccCCcccceEEecccc---ccee--cceeEEEEEcCCCc
Confidence            43322346799999999998   6664  56799999997643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.7e-25  Score=204.98  Aligned_cols=276  Identities=12%  Similarity=0.075  Sum_probs=187.5

Q ss_pred             eEEEeCCCCcEEEEE--eeCCEEEEEEcc-CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEE--------------
Q 019672           30 FKIFDSSTGRLCYER--AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN--------------   92 (337)
Q Consensus        30 ~~vw~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~--------------   92 (337)
                      +++|+++.++.....  +...+..+++.+ +++.++..+       .|+.|++||+.+++....+.              
T Consensus        25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (408)
T 4a11_B           25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGG-------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV   97 (408)
T ss_dssp             HHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEE-------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC
T ss_pred             ceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEc-------CCCeEEEEECCCCcccceEecccccccccccccc
Confidence            467776655444333  345666677766 667766655       38999999999887655443              


Q ss_pred             cCCceeEEEEcC-C--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEee-CCCccEEEEcCCCCccEEEEEEcc
Q 019672           93 FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP-SLNACFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus        93 ~~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~dg~v~i~d~~  167 (337)
                      +...|.++.|++ +  .++.+. |+.|++||+.+++.+..+... .....+++.+ ++++.++++++  .+|.|++||+.
T Consensus        98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~d~~  174 (408)
T 4a11_B           98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE-ETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLK  174 (408)
T ss_dssp             CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSSCSSCCEEEEEE--SSSSEEEEESS
T ss_pred             CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCC-CceeeeEeecCCCCCcEEEEEc--CCCeEEEEeCC
Confidence            566899999987 3  455555 899999999999888777643 2222233333 22455788777  58999999998


Q ss_pred             CCccc-----ccCceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCCCc-eeEeecc-------------CCcceeEEEEEe
Q 019672          168 ELHSH-----CEAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEAT-KSYSFRR-------------GTYPSTIFSLSF  227 (337)
Q Consensus       168 ~~~~~-----~~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~~~-~~~~~~~-------------~~~~~~i~~l~f  227 (337)
                      +++..     |..+|.+++|+|+++ +|++|+.||. |++||+++++ .+..+..             ..+...|.+++|
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSR-VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSC-EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCc-EEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            87654     348899999999999 5999999998 6999998775 3332210             124567999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCc--------cccccc---------ccccccceeecccccc------
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR--------TSSILG---------SILPESVNEVLDPADH------  284 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~--------~~~~~~---------~~~~~~~~~~w~~~~~------  284 (337)
                      +|+++   +|++++.||.|++||+.+.........        ...+..         ....+....+|+....      
T Consensus       254 ~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~  330 (408)
T 4a11_B          254 TSDGL---HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML  330 (408)
T ss_dssp             CTTSS---EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred             cCCCC---EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence            99999   999999999999999987654321100        000000         0001112234443322      


Q ss_pred             ---eeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          285 ---HVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       285 ---~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                         ...+..+.+.++++.|++++.||.+++|+++..+.
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence               12234455677889999999999999999976543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2.1e-26  Score=212.19  Aligned_cols=233  Identities=11%  Similarity=0.076  Sum_probs=173.3

Q ss_pred             CeEEEEEcCCCCEEE-EEcCCc-eEEEeCCCCcE----E--EEEeeCCEEEEEEcc-CCCEEEEEeCCCCCCCCCceEEE
Q 019672            9 PVFFVSFNQDNSGFA-LSTKDG-FKIFDSSTGRL----C--YERAVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         9 ~v~~~~fs~dg~~la-~g~~~g-~~vw~~~~~~~----~--~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ....++++|+...++ +|+.+| ++||++.....    +  +..+...+..+++.+ +.+.++..+       .|++|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s-------~dg~v~v  108 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS-------EDCTVMV  108 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE-------TTSEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEe-------CCCeEEE
Confidence            345688999887655 455555 79999865422    1  222335566677766 566666554       4899999


Q ss_pred             EECCCC-------CEEEEEE-cCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           80 FNTTTG-------TALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        80 wd~~~~-------~~~~~~~-~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      ||+.++       +++..+. +...|.++.|+++.   ++.+. |+.|++||+++++.+..+....+...+.+++++|++
T Consensus       109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  188 (402)
T 2aq5_A          109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG  188 (402)
T ss_dssp             EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS
T ss_pred             EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC
Confidence            999987       5566665 45689999999874   34444 889999999999988888322334567888888889


Q ss_pred             cEEEEcCCCCccEEEEEEccCCcccc------cC-ceEEEEeCCCCCEEEEE---eCCCcEEEEEEcCCCce-eEeeccC
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSHC------EA-PLAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATK-SYSFRRG  216 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~~------~~-~i~~~~~s~dg~~lat~---s~dg~~i~vwd~~~~~~-~~~~~~~  216 (337)
                      .++++++  .||.|++||+++++...      .. .+.+++|+|+|++|++|   +.||. |++||+++++. +..... 
T Consensus       189 ~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~-  264 (402)
T 2aq5_A          189 ALICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL-  264 (402)
T ss_dssp             SCEEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-
T ss_pred             CEEEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-
Confidence            8999888  59999999999876532      23 38999999999999999   78887 69999998765 333322 


Q ss_pred             CcceeEEEEEeecCCCcccEEE-EEeCCCcEEEEecCCCc
Q 019672          217 TYPSTIFSLSFGQSMQFQDILV-ATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       217 ~~~~~i~~l~fs~dg~~~~~la-s~s~dg~v~iw~l~~~~  255 (337)
                      .+...|.+++|+|+++   +|+ +|+.||+|++||+....
T Consensus       265 ~~~~~v~~~~~s~~~~---~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTN---IVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CCCSSCEEEEEETTTT---EEEEEETTCSCEEEEEECSST
T ss_pred             cCCCceeEEEEcCCCC---EEEEEEcCCCeEEEEEecCCC
Confidence            2345689999999999   775 56679999999998765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=4.4e-27  Score=219.28  Aligned_cols=238  Identities=16%  Similarity=0.109  Sum_probs=167.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eCC--EEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERA--VGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         4 ~~~~~~v~~~~fs~-dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .+|..+|++++|+| ++.+|++|+.|+ +++||++++.......  ...  +..+.+.++...++..+       .|++|
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------~dg~i  233 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-------NVGNV  233 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-------SSSBE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-------CCCcE
Confidence            46889999999998 788999998887 6999998765433222  122  23345555666655443       48999


Q ss_pred             EEEECCCCCEEEEEE-cCCceeEEEEcCCe--EE-EEE-CCeEEEEECCCCeeeeeec-CCCCCceEEEEeeCCCccEEE
Q 019672           78 CLFNTTTGTALRELN-FLTSILAVRLNKKR--LV-IVL-REKTYIYDANTLAILDTID-TVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~-v~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ++||++.. .+..+. +...|.+++|+++.  ++ .+. |+.|++||+++.+....+. ...+...+.+++++|++.+|+
T Consensus       234 ~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~  312 (435)
T 4e54_B          234 ILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL  312 (435)
T ss_dssp             EEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred             eeeccCcc-eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence            99998754 444444 45689999998653  33 444 8999999998876544432 223445678888999999999


Q ss_pred             EcCCCCccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEe-----------CCCcEEEEEEcCCCce
Q 019672          152 VPASTTKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATAS-----------EQGTIIRVFLVSEATK  209 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s-----------~dg~~i~vwd~~~~~~  209 (337)
                      +++  .||.|+|||+.++.....           ..+..+.|+|++..+++++           .++..|++||..+|+.
T Consensus       313 s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          313 TTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             EEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            988  599999999987654311           2233456677666666654           2333479999999999


Q ss_pred             eEeeccCCcceeEEEE-EeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          210 SYSFRRGTYPSTIFSL-SFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l-~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +..+..+ +...|.++ +|||+|+   +||+|+ |++|+||+++.++.
T Consensus       391 ~~~l~~~-~~~~v~s~~~fspdg~---~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          391 MCQLYDP-ESSGISSLNEFNPMGD---TLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEECCS-SCCCCCCEEEECTTSS---CEEEEC-SSEEEECCCC----
T ss_pred             EEEEeCC-CCCcEEEEEEECCCCC---EEEEEc-CCcEEEEECCcCee
Confidence            8887544 44567776 6999999   888876 78999999987653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=7.5e-26  Score=205.08  Aligned_cols=238  Identities=10%  Similarity=0.068  Sum_probs=175.7

Q ss_pred             EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--EEEEEE-cCCceeEEEEcCCe--EEEEE-CCeE
Q 019672           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELN-FLTSILAVRLNKKR--LVIVL-REKT  115 (337)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i  115 (337)
                      +..+...+..+.+.++.+.++..+       .|+.|++||+.+++  .+..+. +...|.++.|+++.  ++++. |+.|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~-------~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICP-------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEEC-------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEe-------CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            333445667777777777776654       38999999999887  677775 45689999998654  55555 8899


Q ss_pred             EEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc---------cccCceEEEEeCCCC
Q 019672          116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---------HCEAPLAAIVLSSNG  186 (337)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~---------~~~~~i~~~~~s~dg  186 (337)
                      ++||+.+++....+....+...+.++.++|++.++++++  .||.|++||+.....         .|...|.+++|+|++
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            999998887655554334455678888888999999988  589999999987652         134789999999999


Q ss_pred             CEEEEEeCCCcEEEEEEc------------------CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEE
Q 019672          187 MYIATASEQGTIIRVFLV------------------SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV  248 (337)
Q Consensus       187 ~~lat~s~dg~~i~vwd~------------------~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~i  248 (337)
                      ++|++++.||. |++||+                  ..++.+..+.  .+...|.+++|+|+++   +|++++.||+|++
T Consensus       155 ~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~---~l~~~~~d~~i~i  228 (372)
T 1k8k_C          155 VLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGS---RVAWVSHDSTVCL  228 (372)
T ss_dssp             SEEEEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSS---EEEEEETTTEEEE
T ss_pred             CEEEEEcCCCC-EEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCC---EEEEEeCCCEEEE
Confidence            99999999998 699995                  3667777764  2456799999999999   9999999999999


Q ss_pred             EecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          249 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       249 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      ||+++.+....       +    ......+          ..+.+.+++..++ ++.||.+++|+++.
T Consensus       229 ~d~~~~~~~~~-------~----~~~~~~v----------~~~~~~~~~~~l~-~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          229 ADADKKMAVAT-------L----ASETLPL----------LAVTFITESSLVA-AGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEGGGTTEEEE-------E----ECSSCCE----------EEEEEEETTEEEE-EETTSSCEEEEEET
T ss_pred             EECCCCceeEE-------E----ccCCCCe----------EEEEEecCCCEEE-EEeCCeEEEEEccC
Confidence            99976543211       0    0000001          1122233434444 45999999999987

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=3.3e-24  Score=196.15  Aligned_cols=233  Identities=12%  Similarity=0.090  Sum_probs=183.9

Q ss_pred             CCCeEEEEEcCCCCEE-EEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~l-a~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ...+.+++|+|+|+++ ++++.++ +++||+.+++.+..... ..+..+++.++.+.+++++.      .+++|++||+.
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------~~~~v~v~d~~  104 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDTT  104 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEEC------CCCEEEEEECC
Confidence            3468999999999986 5665554 79999999988766543 35666677777777766654      47999999999


Q ss_pred             CCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           84 TGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      +++.+..+..+..+.++.++++.  ++++.  ++.|++||+.+++.+..+..+..   ...+.++|++..+++++. .++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~  180 (391)
T 1l0q_A          105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANF-DSM  180 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEET-TTT
T ss_pred             CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeC-CCC
Confidence            99999888888889999998764  43444  78999999999988888765433   456677778877754433 589


Q ss_pred             EEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEe---CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          160 SVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       160 ~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s---~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .|++||+.+++...    ...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..+   ..+.+++|+|||+
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~  256 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDGK  256 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecC---CCccEEEEccCCC
Confidence            99999998876543    26789999999999999988   5776 699999999988877543   2478999999998


Q ss_pred             cccEE-EEEeCCCcEEEEecCCCcc
Q 019672          233 FQDIL-VATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       233 ~~~~l-as~s~dg~v~iw~l~~~~~  256 (337)
                         +| ++++.|++|++||+++.+.
T Consensus       257 ---~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          257 ---KVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             ---EEEEEETTTTEEEEEETTTTEE
T ss_pred             ---EEEEEcCCCCEEEEEECCCCcE
Confidence               66 6778999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.9e-26  Score=204.91  Aligned_cols=219  Identities=9%  Similarity=0.078  Sum_probs=160.5

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECC---------CCeeeeeecCCCCCceEEEEe
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDAN---------TLAILDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~  142 (337)
                      .|++|++||+++++.+..+. ...|.++.+++. ++.+. |++|++|+..         +++.+..+.. .+...+.+++
T Consensus        56 ~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  132 (343)
T 3lrv_A           56 EDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV-DSANEIIYMY  132 (343)
T ss_dssp             ETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC-CCSSCEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeec-CCCCCEEEEE
Confidence            59999999999999888876 345777777887 44444 8899999665         4443444432 2234578888


Q ss_pred             eCC--CccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee-Eee
Q 019672          143 PSL--NACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS-YSF  213 (337)
Q Consensus       143 ~~~--~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~-~~~  213 (337)
                      ++|  ++.++++++  .||.|++||+.+++...      ..+|++++|+|+|++||+|+.||. |+|||+++++.+ ..+
T Consensus       133 ~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~~~~~~~~  209 (343)
T 3lrv_A          133 GHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRF  209 (343)
T ss_dssp             CCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCTTSCCEEC
T ss_pred             cCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCCCCccEE
Confidence            888  889999888  59999999999877542      257999999999999999999998 699999999987 667


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCC
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  293 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  293 (337)
                      .. .|...|.+|+|+|+|.   +|+++++ ++|+|||+++.........   +.....+     +..        ..+.+
T Consensus       210 ~~-~h~~~v~~l~fs~~g~---~l~s~~~-~~v~iwd~~~~~~~~~~~~---~~~~~~~-----~~~--------~~~~~  268 (343)
T 3lrv_A          210 PV-DEEAKIKEVKFADNGY---WMVVECD-QTVVCFDLRKDVGTLAYPT---YTIPEFK-----TGT--------VTYDI  268 (343)
T ss_dssp             CC-CTTSCEEEEEECTTSS---EEEEEES-SBEEEEETTSSTTCBSSCC---CBC----------CC--------EEEEE
T ss_pred             ec-cCCCCEEEEEEeCCCC---EEEEEeC-CeEEEEEcCCCCcceeecc---ccccccc-----ccc--------eEEEE
Confidence            53 2467899999999999   9999994 5999999987654322110   0000000     000        12334


Q ss_pred             CcccCEEEEEEe-CCcEEEEEEecCC
Q 019672          294 GVKRASVSVITY-NGYFVEYIFSINN  318 (337)
Q Consensus       294 ~~~~~~l~~~~~-dg~~~~~~~~~~~  318 (337)
                      .+++++|++++. |+.+++|+++...
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             CCCCCEEEEecCCCCcEEEEEEcccc
Confidence            556689999998 9999999996544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=5.7e-25  Score=196.34  Aligned_cols=257  Identities=12%  Similarity=0.082  Sum_probs=175.8

Q ss_pred             eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC----EEEEEE-cCCceeEEEEcC----CeEEEEE-CCe
Q 019672           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALRELN-FLTSILAVRLNK----KRLVIVL-REK  114 (337)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~----~~~~~~-~~~~v~~i~~~~----~~~~v~~-d~~  114 (337)
                      +...+..+.+.++.+.++.++       .|++|++||+.++.    .+..+. +..+|.+++|++    +.++++. |+.
T Consensus        10 H~~~v~~~~~~~~~~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A           10 HDDLVHDVVYDFYGRHVATCS-------SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE-------TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccceeEEEEcCCCCEEEEee-------CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            445677777777777776655       48999999998764    444454 456899999976    3455555 889


Q ss_pred             EEEEECCCC---------eeeeeecCCCCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCccc-----------
Q 019672          115 TYIYDANTL---------AILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSH-----------  172 (337)
Q Consensus       115 i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~-----------  172 (337)
                      |++||++++         +.+..+..+  ...+.++.++|+  +.++++++  .||.|++||+.+.+..           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~  158 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTSEMKV  158 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred             EEEEecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhccccccccccc
Confidence            999999876         445555544  345777777777  88899887  5999999999876542           


Q ss_pred             -------ccCceEEEEeCCC---CCEEEEEeCCCcEEEEEEcCCCce--eEeeccCCcceeEEEEEeecCC----CcccE
Q 019672          173 -------CEAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSM----QFQDI  236 (337)
Q Consensus       173 -------~~~~i~~~~~s~d---g~~lat~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~fs~dg----~~~~~  236 (337)
                             +...+.+++|+|+   +.+|++++.|+. +.+|+...++.  +..+.  .+...|++++|+|++    +   +
T Consensus       159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~---~  232 (351)
T 3f3f_A          159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQ---L  232 (351)
T ss_dssp             CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSE---E
T ss_pred             cccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcce---E
Confidence                   2267999999997   999999999997 46777777765  33442  346689999999998    7   9


Q ss_pred             EEEEeCCCcEEEEecCCCcccCCCCcccccc--------ccccc--------ccc---------eeecccccceeeeecc
Q 019672          237 LVATSSSGSLHVFSPGFAINQRRGGRTSSIL--------GSILP--------ESV---------NEVLDPADHHVLRNAF  291 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~~~~~~~~~~~~~--------~~~~~--------~~~---------~~~w~~~~~~~~~~~~  291 (337)
                      |++++.||+|+|||+................        .....        ...         ..+.....+...+..+
T Consensus       233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  312 (351)
T 3f3f_A          233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV  312 (351)
T ss_dssp             EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE
T ss_pred             EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE
Confidence            9999999999999998653322110000000        00000        000         0111111122234455


Q ss_pred             CCCcccCEEEEEEeCCcEEEEEEecCC
Q 019672          292 PAGVKRASVSVITYNGYFVEYIFSINN  318 (337)
Q Consensus       292 ~~~~~~~~l~~~~~dg~~~~~~~~~~~  318 (337)
                      .+.++++.|++++.||.+++|++...+
T Consensus       313 ~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          313 SWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             EEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            567788999999999999999997543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3.7e-24  Score=195.83  Aligned_cols=258  Identities=9%  Similarity=0.069  Sum_probs=191.2

Q ss_pred             CEEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce
Q 019672           20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (337)
Q Consensus        20 ~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v   97 (337)
                      ..+++++.++ +++||+.+++.+..... ..+..+.+.++.+.+++.+.      .|++|++||+.+++.+..+..+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSSP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECC------CCCeEEEEECCCCeEEEEEECCCCc
Confidence            3467777666 69999999988776654 34556677777777655554      4899999999999999999888899


Q ss_pred             eEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc
Q 019672           98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (337)
Q Consensus        98 ~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~  173 (337)
                      .++++++++  ++++.  ++.|++||+.+++.+..+..+.   .+.+++++|++..+++++. .++.|++||+.+++...
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNN-GDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEE
Confidence            999998764  44555  5899999999998887776443   3567777888887744443 58999999998876543


Q ss_pred             c----CceEEEEeCCCCCEE-EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe---CCCc
Q 019672          174 E----APLAAIVLSSNGMYI-ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGS  245 (337)
Q Consensus       174 ~----~~i~~~~~s~dg~~l-at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s---~dg~  245 (337)
                      .    ..+.+++|+|+|++| ++++.++. |++||+.+++.+..+..   ...+.+++|+|+|+   +|++++   .++.
T Consensus       153 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~---~l~~~~~~~~~~~  225 (391)
T 1l0q_A          153 TVSVGRSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT---KAYVTNVDKYFNT  225 (391)
T ss_dssp             EEECCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEEC---SSEEEEEEECTTSS---EEEEEEECSSCCE
T ss_pred             EEecCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEec---CCCccceEECCCCC---EEEEEecCcCCCc
Confidence            2    668999999999987 56677786 69999999988877643   34688999999999   888887   6899


Q ss_pred             EEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE-EEEeCCcEEEEEEec
Q 019672          246 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS-VITYNGYFVEYIFSI  316 (337)
Q Consensus       246 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~~~~~~~~~  316 (337)
                      |++||+.+.+....       +..  ...             ...+.+.+++++|+ +++.||.+++|++..
T Consensus       226 v~~~d~~~~~~~~~-------~~~--~~~-------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          226 VSMIDTGTNKITAR-------IPV--GPD-------------PAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEETTTTEEEEE-------EEC--CSS-------------EEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCeEEEE-------Eec--CCC-------------ccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            99999976543211       000  000             01122345557774 557799999998754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=5.3e-25  Score=200.69  Aligned_cols=276  Identities=13%  Similarity=0.076  Sum_probs=189.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCC---cE-EEEEeeC-------------------CEEEEEEccCCCEEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG---RL-CYERAVG-------------------AFSIVEMLYSSSLLAI   63 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~---~~-~~~~~~~-------------------~~~~~~~~~~~~~~~~   63 (337)
                      ..||++++|+|||++|++|+.+.-     .+|   ++ ++.....                   ...+.++.++.+.++.
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~-----~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEG-----NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILV   88 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSS-----SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCcc-----ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEE
Confidence            469999999999999999987642     233   22 3443211                   0112234445554443


Q ss_pred             EeCCCC-----CCCCCceEEEEECCCCCEEEE----EEc------CCceeEEEEcCCe--EEEEE---CCeEEEEECCCC
Q 019672           64 VGAGEQ-----PSLSPRRLCLFNTTTGTALRE----LNF------LTSILAVRLNKKR--LVIVL---REKTYIYDANTL  123 (337)
Q Consensus        64 ~~~g~~-----~~~~d~~v~iwd~~~~~~~~~----~~~------~~~v~~i~~~~~~--~~v~~---d~~i~i~d~~~~  123 (337)
                      ... ..     ....|+++|+|++.+......    ...      ...+..++|+|++  +++++   |+.|+|||++++
T Consensus        89 g~~-~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           89 GCN-ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             ECC-CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred             EEC-CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence            221 11     024588999999876543222    111      1247889998875  45555   689999999999


Q ss_pred             eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeCCCCCEEEEEeCCC
Q 019672          124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      +.+..+...   ..+.+++++|++.++++++   ++.+.+|+..++...       +...|.+++|+|+|+++++++.|+
T Consensus       168 ~~~~~~~~~---~~V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          168 TEKFEIETR---GEVKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             EEEEEEECS---SCCCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             cEEEEeCCC---CceEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            988887633   2466778888999999886   456777777666543       236799999999999999999887


Q ss_pred             c---EEEEEEcCCCcee----EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccc
Q 019672          197 T---IIRVFLVSEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS  269 (337)
Q Consensus       197 ~---~i~vwd~~~~~~~----~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~  269 (337)
                      .   .+++||+..+...    ..+.  .+...|++|+|||||+   +||+|+.|++|+|||+++.+...          .
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~---~lasgs~D~~V~iwd~~~~~~~~----------~  306 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGE---LAVLASNDNSIALVKLKDLSMSK----------I  306 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSC---EEEEEETTSCEEEEETTTTEEEE----------E
T ss_pred             cceeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCC---ceEEEcCCCEEEEEECCCCcEEE----------E
Confidence            3   4688998876542    2222  2345799999999999   99999999999999998765322          1


Q ss_pred             cccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          270 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       270 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      ++..          |...+..+++.|++++|++++.||+|++|++..+-.
T Consensus       307 ~~~g----------H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          307 FKQA----------HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             ETTS----------SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred             ecCc----------ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            1111          111233445577889999999999999999976543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=8e-25  Score=203.50  Aligned_cols=248  Identities=15%  Similarity=0.115  Sum_probs=168.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC-----------EEEEEEcC-------------CceeEEEE
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----------ALRELNFL-------------TSILAVRL  102 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~-----------~~~~~~~~-------------~~v~~i~~  102 (337)
                      ..+..+++.++++.++..+.       |+.|+|||+.+++           ....+..+             ..|.++.|
T Consensus        29 ~~V~~v~~s~~g~~la~g~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDK-------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEET-------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred             CcEEEEEECCCCCEEEEEcC-------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence            56777888887787776554       8999999998876           35555544             67999999


Q ss_pred             cCCe----EEEEE-CCeEEEEECCCCeeee---------------------------------------eecCCCCCceE
Q 019672          103 NKKR----LVIVL-REKTYIYDANTLAILD---------------------------------------TIDTVPNLKGL  138 (337)
Q Consensus       103 ~~~~----~~v~~-d~~i~i~d~~~~~~~~---------------------------------------~~~~~~~~~~~  138 (337)
                      +++.    ++++. |+.|++||+.+++...                                       .+ ...+...+
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v  180 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-ANAHTYHI  180 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-CSCCSSCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-ccCCCcce
Confidence            8864    44444 8999999997643311                                       11 12234456


Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCc-c------------cccCceEEEEeCCCC-CEEEEEeCCCcEEEEEEc
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELH-S------------HCEAPLAAIVLSSNG-MYIATASEQGTIIRVFLV  204 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-~------------~~~~~i~~~~~s~dg-~~lat~s~dg~~i~vwd~  204 (337)
                      .+++++|++.+++++ .  ||.|++||+.+.. .            .|...|++++|+|+| ++|++|+.||+ |++||+
T Consensus       181 ~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~  256 (447)
T 3dw8_B          181 NSISINSDYETYLSA-D--DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDM  256 (447)
T ss_dssp             CEEEECTTSSEEEEE-C--SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEET
T ss_pred             EEEEEcCCCCEEEEe-C--CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEEC
Confidence            777888888899986 3  8999999998432 1            244789999999999 99999999998 699999


Q ss_pred             CCCce----eEeeccCCc----------ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccccccccc
Q 019672          205 SEATK----SYSFRRGTY----------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSI  270 (337)
Q Consensus       205 ~~~~~----~~~~~~~~~----------~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~  270 (337)
                      ++++.    +..+..+..          ...|.+++|+|+|+   +|++++. ++|+|||+.....+.............
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---EEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence            99886    566643211          02799999999999   9999999 999999998633221100000000000


Q ss_pred             cccc--ceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          271 LPES--VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       271 ~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      +...  ...++.       ...+.+.+++++|++++.||.+++|++...
T Consensus       333 l~~~~~~~~i~~-------~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~  374 (447)
T 3dw8_B          333 LCSLYENDCIFD-------KFECCWNGSDSVVMTGSYNNFFRMFDRNTK  374 (447)
T ss_dssp             HHHHHHTSGGGC-------CCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred             cccccccccccc-------ceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence            0000  000000       001234566689999999999999987543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.2e-26  Score=211.49  Aligned_cols=235  Identities=13%  Similarity=0.134  Sum_probs=160.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc---EEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      ...+..+|++++|+|++++|++|+.++ +++||+.+++   ......  ...+..+.+.++.+.++..+       .|++
T Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~d~~  123 (377)
T 3dwl_C           51 FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-------GARV  123 (377)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-------SSSC
T ss_pred             EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-------cCCe
Confidence            346888999999999999999998876 6999998876   344432  34455566666666666555       3899


Q ss_pred             EEEEECCCCCE---EEEEE--cCCceeEEEEcCCe--EEEEE-CCeEEEEECCC------------------Ceeeeeec
Q 019672           77 LCLFNTTTGTA---LRELN--FLTSILAVRLNKKR--LVIVL-REKTYIYDANT------------------LAILDTID  130 (337)
Q Consensus        77 v~iwd~~~~~~---~~~~~--~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~------------------~~~~~~~~  130 (337)
                      |++||+++++.   ...+.  +...|.++.|+++.  ++++. |+.|++||+..                  ++.+..+ 
T Consensus       124 i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  202 (377)
T 3dwl_C          124 ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-  202 (377)
T ss_dssp             EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred             EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence            99999998873   55665  56689999998864  44444 88999999852                  3344444 


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc----c-----ccCceEEEEeCCCCCEEEEEeCCCcEEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS----H-----CEAPLAAIVLSSNGMYIATASEQGTIIRV  201 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~----~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~v  201 (337)
                        .+...+.+++++|++.++++++  .||.|++||+.+++.    .     |..+|.+++|+|+|++|++|+.++. + +
T Consensus       203 --~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~-~  276 (377)
T 3dwl_C          203 --PSGGWVHAVGFSPSGNALAYAG--HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP-I-L  276 (377)
T ss_dssp             --CCSSSEEEEEECTTSSCEEEEE--TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE-E-E
T ss_pred             --cCCceEEEEEECCCCCEEEEEe--CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE-E-E
Confidence              3344677888888999999988  599999999998765    3     2378999999999999999987764 4 7


Q ss_pred             EEcCCCc-e-eE----------------------------------eec--------------cCCcceeEEEEEeecCC
Q 019672          202 FLVSEAT-K-SY----------------------------------SFR--------------RGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       202 wd~~~~~-~-~~----------------------------------~~~--------------~~~~~~~i~~l~fs~dg  231 (337)
                      |+...+. . ..                                  .+.              ...|...|++|++.++.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~  356 (377)
T 3dwl_C          277 LQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGT  356 (377)
T ss_dssp             ECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEE
T ss_pred             EEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCC
Confidence            7665221 0 00                                  000              01145679999977655


Q ss_pred             C-cccEEEEEeCCCcEEEEec
Q 019672          232 Q-FQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       232 ~-~~~~las~s~dg~v~iw~l  251 (337)
                      . ....|++++.||+|+|||+
T Consensus       357 ~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          357 PGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             TTEEEEEEEEETTSEEEEECC
T ss_pred             CCceEEEEeecCCCcEEEecC
Confidence            3 0014999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=1.1e-24  Score=202.11  Aligned_cols=269  Identities=10%  Similarity=0.037  Sum_probs=194.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-----eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-----VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+.+++|+|++.++++++.++ +++||+.+++......     .+  .+..+.+..+...++. ++      .|++|++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s-~~------~d~~v~~  195 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVS-QM------QANAVHV  195 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEE-EG------GGTEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEE-EC------CCCEEEE
Confidence            4466899999777777777665 7999999998765321     12  3444555444444333 32      4899999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      ||+++++.+..+.. ...+.++.++++.  ++++.  ++.|++||+++++.+..+..+   ..+.++.++|++.++++++
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI---GLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC---SEEEEEEECTTSSEEEEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC---CCceEEEEcCCCCEEEEEE
Confidence            99999999888864 4478999998754  54554  789999999999887777543   3466778888888887765


Q ss_pred             CC------CccEEEEEEccCCcccc----cCceEEEEeCCCCCEE-EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          155 ST------TKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYI-ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       155 ~~------~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~l-at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      ..      .||.|++||+.+++...    ...+.+++|+|+|+.+ ++++.|+. |++||+.+++.+..+..   ...+.
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~~---~~~~~  348 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIPV---FDKPN  348 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---SSSEE
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEecC---CCCCC
Confidence            21      27899999998876543    2678999999999755 66688887 69999999988877752   34588


Q ss_pred             EEEeecCCCcccEEEEEeC---------------CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeee
Q 019672          224 SLSFGQSMQFQDILVATSS---------------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR  288 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~---------------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  288 (337)
                      +++|+|+|+   +|++++.               ||.|++||+.+.+....       +..  ...             .
T Consensus       349 ~~~~s~dg~---~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~-------~~~--~~~-------------~  403 (433)
T 3bws_A          349 TIALSPDGK---YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF-------WEA--GNQ-------------P  403 (433)
T ss_dssp             EEEECTTSS---EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------EEC--SSS-------------E
T ss_pred             eEEEcCCCC---EEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------ecC--CCC-------------C
Confidence            999999999   8888877               57999999976543211       000  000             1


Q ss_pred             eccCCCcccCEEEEEEe-CCcEEEEEEe
Q 019672          289 NAFPAGVKRASVSVITY-NGYFVEYIFS  315 (337)
Q Consensus       289 ~~~~~~~~~~~l~~~~~-dg~~~~~~~~  315 (337)
                      ..+.+.++++.|++++. ||.+++|+++
T Consensus       404 ~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          404 TGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            12233556688888875 9999999885

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.1e-25  Score=209.46  Aligned_cols=235  Identities=12%  Similarity=0.107  Sum_probs=172.0

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEcCCc-eEEEeCCC----------CcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCC
Q 019672            5 SSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSST----------GRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQP   70 (337)
Q Consensus         5 ~~~~~v~~~~fs~d-g~~la~g~~~g-~~vw~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~   70 (337)
                      .+.++|++++|+|+ +.+||+|+.+| +++|++.+          .+.+.....  ..+..+.+.+....++++++    
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----  201 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS----  201 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC----
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe----
Confidence            46778999999998 67899998877 69999876          344444333  34455566655552333333    


Q ss_pred             CCCCceEEEEECCCCCE-------EEEE-EcCCceeEEEEcC-C--eEEEEE-CCeEEEEECCCC---eeeeeecCCCCC
Q 019672           71 SLSPRRLCLFNTTTGTA-------LREL-NFLTSILAVRLNK-K--RLVIVL-REKTYIYDANTL---AILDTIDTVPNL  135 (337)
Q Consensus        71 ~~~d~~v~iwd~~~~~~-------~~~~-~~~~~v~~i~~~~-~--~~~v~~-d~~i~i~d~~~~---~~~~~~~~~~~~  135 (337)
                        .|++|++||+.++..       ...+ .+...|.++.|++ +  .++++. ++.|++||++++   +.+..+..+  .
T Consensus       202 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~--~  277 (430)
T 2xyi_A          202 --DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH--T  277 (430)
T ss_dssp             --TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC--S
T ss_pred             --CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC--C
Confidence              599999999987432       2333 3455899999986 2  344444 899999999876   455555543  3


Q ss_pred             ceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCcc-c-----ccCceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCC-
Q 019672          136 KGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHS-H-----CEAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSE-  206 (337)
Q Consensus       136 ~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~-~-----~~~~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~-  206 (337)
                      ..+.+++++|++. ++++++  .||.|++||+++... .     |..+|.+++|+|+++ +||+++.||+ |+|||+.. 
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~  354 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKI  354 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGT
T ss_pred             CCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCC
Confidence            4577788888776 577776  599999999987432 2     448999999999995 7999999998 69999987 


Q ss_pred             -------------CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          207 -------------ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       207 -------------~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                                   .+.+..+.  .+...|++++|+|+++.  +|++++.||.|+||++...
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~--~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          355 GEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPW--IICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTT--EEEEEETTSEEEEEEECHH
T ss_pred             ccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCC--EEEEEECCCCEEEeEcccc
Confidence                         24444442  34567999999999973  7999999999999998753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=1.6e-24  Score=201.71  Aligned_cols=249  Identities=12%  Similarity=0.151  Sum_probs=165.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC----------CCEEEEEEc-CCceeEEEEcCC---eEEEEE-
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT----------GTALRELNF-LTSILAVRLNKK---RLVIVL-  111 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~----------~~~~~~~~~-~~~v~~i~~~~~---~~~v~~-  111 (337)
                      +.+..+.+.+....++.+++      .|+.|++||+.+          .+++..+.. ...|.++.|+++   .++++. 
T Consensus       129 ~~v~~l~~~p~~~~~lat~~------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKT------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEEC------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             CcEEEEEECCCCCcEEEEEC------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            44555565554222333333      489999999976          456666654 458999999875   344444 


Q ss_pred             CCeEEEEECCCCee-------eeeecCCCCCceEEEEeeCC-CccEEEEcCCCCccEEEEEEccCCc---c-----cccC
Q 019672          112 REKTYIYDANTLAI-------LDTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELH---S-----HCEA  175 (337)
Q Consensus       112 d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~la~~~~~~dg~v~i~d~~~~~---~-----~~~~  175 (337)
                      |+.|++||+..+..       ...+..  +...+.++.++| ++.++++++  .||.|++||+++..   .     .|..
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTG--HTAVVEDVAWHLLHESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECC--CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecC--CCCCEeeeEEeCCCCCEEEEEe--CCCeEEEEECCCCCCCcceeEeecCCC
Confidence            88999999987322       223333  334566777777 566787777  59999999998763   2     2348


Q ss_pred             ceEEEEeCCCCC-EEEEEeCCCcEEEEEEcCC-CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          176 PLAAIVLSSNGM-YIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       176 ~i~~~~~s~dg~-~lat~s~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +|++++|+|++. +||+|+.||+ |++||+++ ++.+..+..  +...|.+++|+|+++  .+|++++.||+|+|||+..
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~--~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNE--TILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCT--TEEEEEETTSCCEEEEGGG
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCC--CEEEEEeCCCcEEEEeCCC
Confidence            899999999987 7999999997 69999998 455666643  356799999999996  2799999999999999976


Q ss_pred             CcccCCCCcccccccccccccceeecccccceeeeeccCCCcccC-EEEEEEeCCcEEEEEEecC
Q 019672          254 AINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA-SVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~~~~~~~~~~  317 (337)
                      ............    ..+.   .+.....+...+..+.+.++++ .|++++.||.+++|+++..
T Consensus       354 ~~~~~~~~~~~~----~~~~---~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          354 IGEEQSTEDAED----GPPE---LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTCCCCHHHHHH----CCTT---EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccCcccccc----CCcc---eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            432211000000    0000   0000111111122333445556 7899999999999999654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.1e-26  Score=215.30  Aligned_cols=256  Identities=10%  Similarity=0.018  Sum_probs=175.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCce-EEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      ...|.+++|+|||+++|+++.|+. +  |...++.+ ..+...+..+.+.+++              .++++.+|+.+..
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-~gh~~~v~~V~FsPdg--------------~~~~~~~~~~~~~   77 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-NCNSKNLFHVKEFPLE--------------FENKLDFELAQQN   77 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-SSBGGGTEEEEEECCC--------------CCCTTTTSCCCSS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--ccccccee-cCCCccEEEEEECCCC--------------CcceEEEEeCCCc
Confidence            356899999999999999999885 6  76555433 2223345555554433              1556666654432


Q ss_pred             CEEEEEEcCCceeEEEEcCCeE--EEEE-CCeEEEEECCCCeeeeeecCCCC---CceEEEEeeCCCccEEEEcCCCCcc
Q 019672           86 TALRELNFLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~--~v~~-d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      + +.++.+...|.+++|+|++-  ++++ |+.|++||...  .+..+. +..   ...+.+++++|++.+||+++  .||
T Consensus        78 ~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--~DG  151 (588)
T 2j04_A           78 G-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--EDG  151 (588)
T ss_dssp             C-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE--TTS
T ss_pred             e-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc--CCC
Confidence            2 33334456899999998764  4444 89999999644  555554 322   23577889999999999998  599


Q ss_pred             EEEEEEccCCcc----------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce---eEeeccCCcce
Q 019672          160 SVLVYNVMELHS----------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPS  220 (337)
Q Consensus       160 ~v~i~d~~~~~~----------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~---~~~~~~~~~~~  220 (337)
                      +|+|||+.++..                .|...|.+++|+|||  ||+++.|++ |++||+.+++.   ..++..+ +..
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~-h~~  227 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNA-SRR  227 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEECC-CSS
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeeccc-ccC
Confidence            999999988742                123689999999999  888899998 69999988773   2345333 456


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEE
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  300 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l  300 (337)
                      .|.+++|+  |+   +||+++ +++|++||+........       .   . .+...+++.+        ++..+++..|
T Consensus       228 ~V~svaFs--g~---~LASa~-~~tIkLWd~~~~~~~~~-------~---~-gh~~~V~~va--------~~~s~d~~~L  282 (588)
T 2j04_A          228 KITDLKIV--DY---KVVLTC-PGYVHKIDLKNYSISSL-------K---T-GSLENFHIIP--------LNHEKESTIL  282 (588)
T ss_dssp             CCCCEEEE--TT---EEEEEC-SSEEEEEETTTTEEEEE-------E---C-SCCSCCCEEE--------ETTCSSCEEE
T ss_pred             cEEEEEEE--CC---EEEEEe-CCeEEEEECCCCeEEEE-------E---c-CCCceEEEEE--------eeeCCCCCEE
Confidence            79999999  57   899998 69999999876543110       0   0 0111122211        1114555678


Q ss_pred             EEEEeCCcEEEEEEe
Q 019672          301 SVITYNGYFVEYIFS  315 (337)
Q Consensus       301 ~~~~~dg~~~~~~~~  315 (337)
                      +++..||+ ++|.++
T Consensus       283 a~a~edG~-klw~~d  296 (588)
T 2j04_A          283 LMSNKTSY-KVLLED  296 (588)
T ss_dssp             EECSSCEE-EEEESS
T ss_pred             EEEcCCCC-EEEeec
Confidence            88888999 888875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.4e-24  Score=199.75  Aligned_cols=250  Identities=12%  Similarity=0.074  Sum_probs=176.5

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC---EEEEEEcC-----------------------------
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELNFL-----------------------------   94 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~---~~~~~~~~-----------------------------   94 (337)
                      +++..+.+.+++++++.. .       ++.|++||+.+|+   .+..+..+                             
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~-------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-I-------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL   76 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-E-------TTEEEEEEEETTTEEEEEEEEECCC----------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-e-------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccc
Confidence            455667777777744433 2       5799999999998   65555422                             


Q ss_pred             --------------------------CceeEEEEcCCeEE--EEE--CCeEEEEECC--CCeeeeeecCCCCCceEEEEe
Q 019672           95 --------------------------TSILAVRLNKKRLV--IVL--REKTYIYDAN--TLAILDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        95 --------------------------~~v~~i~~~~~~~~--v~~--d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~  142 (337)
                                                ..|.+++|+++.-.  ++.  |+.|++||+.  +++.+..+..+..+..+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  156 (450)
T 2vdu_B           77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS  156 (450)
T ss_dssp             -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred             ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence                                      15899999887532  333  8999999998  787777775444455688889


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCccc---------ccCceEEEEeCCC---CCEEEEEeCCCcEEEEEEcCCCcee
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSH---------CEAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEATKS  210 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------~~~~i~~~~~s~d---g~~lat~s~dg~~i~vwd~~~~~~~  210 (337)
                      ++|++.+|++++  .+|.|.+||+.+....         |..+|++++|+|+   +++|++|+.|++ |++||+.+++.+
T Consensus       157 ~sp~~~~l~~~~--~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~  233 (450)
T 2vdu_B          157 IAEDDTTVIIAD--KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIV  233 (450)
T ss_dssp             ECTTSSEEEEEE--TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCE
T ss_pred             EcCCCCEEEEEe--CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCcee
Confidence            999999999987  4899999998776533         3488999999999   999999999998 699999999988


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCccc---cccc--ccccccce-eecccccc
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTS---SILG--SILPESVN-EVLDPADH  284 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~---~~~~--~~~~~~~~-~~w~~~~~  284 (337)
                      ..+..+ +...|.+++|+ +++   +|++++.|++|+|||+.+++.........   .+..  ...|..+. ....  ..
T Consensus       234 ~~~~~~-h~~~v~~~~~s-d~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  306 (450)
T 2vdu_B          234 DKWLFG-HKHFVSSICCG-KDY---LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND--II  306 (450)
T ss_dssp             EEECCC-CSSCEEEEEEC-STT---EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC------------CB
T ss_pred             eeeecC-CCCceEEEEEC-CCC---EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc--cc
Confidence            775444 45679999999 999   99999999999999998765422110000   0000  00000000 0000  00


Q ss_pred             eeeeeccCCCcccCEEEEEE-eCCcEEEEEE
Q 019672          285 HVLRNAFPAGVKRASVSVIT-YNGYFVEYIF  314 (337)
Q Consensus       285 ~~~~~~~~~~~~~~~l~~~~-~dg~~~~~~~  314 (337)
                      ...+..+.+.++++.|++++ .||.+++|++
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            01122333456678999999 8999999999

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.6e-23  Score=194.18  Aligned_cols=231  Identities=15%  Similarity=0.109  Sum_probs=182.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+...|++++|+|+++++++++.++ +++||+++++.+.....  ..+..+.+.++.+.+++++.      .|+.|++||
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~d  240 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW------ISEDISVID  240 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET------TTTEEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec------CCCcEEEEE
Confidence            4667899999999999999998766 69999999887766543  44666777777777766654      489999999


Q ss_pred             CCCCCEEEEEEcCCceeEEEEcCCe--EEEEE---------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           82 TTTGTALRELNFLTSILAVRLNKKR--LVIVL---------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      +++++.+..+..+..+.++.++++.  ++++.         |+.|++||+.+++.+..+...   .....++++|++..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          241 RKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKI  317 (433)
T ss_dssp             TTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE---ECEEEEEECSSTTEE
T ss_pred             CCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC---CCcceEEECCCCCEE
Confidence            9999988888877789999998764  55544         468999999998877666322   234566677777655


Q ss_pred             EEcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeC---------------CCcEEEEEEcCCCceeE
Q 019672          151 AVPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASE---------------QGTIIRVFLVSEATKSY  211 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~---------------dg~~i~vwd~~~~~~~~  211 (337)
                      ++++. .++.|++||+.+++...    ...+.+++|+|+|++|++++.               ||. |++||+.+++.+.
T Consensus       318 ~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~~  395 (433)
T 3bws_A          318 YVSDM-CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVKE  395 (433)
T ss_dssp             EEEET-TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEEE
T ss_pred             EEEec-CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEEE
Confidence            44433 58999999999876543    277999999999999998887               466 6999999999888


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEEecC
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPG  252 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l~  252 (337)
                      .+..   ...+.+++|+|||+   +|++++. |++|+||+++
T Consensus       396 ~~~~---~~~~~~~~~s~dg~---~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          396 FWEA---GNQPTGLDVSPDNR---YLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEC---SSSEEEEEECTTSC---EEEEEETTTTEEEEEEET
T ss_pred             EecC---CCCCceEEEcCCCC---EEEEEECCCCeEEEEEec
Confidence            7753   23589999999999   8887764 9999999986

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-24  Score=214.94  Aligned_cols=239  Identities=9%  Similarity=0.051  Sum_probs=171.2

Q ss_pred             eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--CCCEEEEEE-cCCceeEEEEcCC----eEEEEE-CCeEE
Q 019672           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALRELN-FLTSILAVRLNKK----RLVIVL-REKTY  116 (337)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--~~~~~~~~~-~~~~v~~i~~~~~----~~~v~~-d~~i~  116 (337)
                      +.+.+..+.+.++++.++.++       .|++|++||+.  +++.+..+. +..+|.++.|+++    .++++. |+.|+
T Consensus         8 H~~~V~~l~~s~dg~~latg~-------~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            8 HNELIHDAVLDYYGKRLATCS-------SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             CCCCEEEECCCSSSCCEEEEE-------TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             CcceeEEEEECCCCCeEEEEE-------CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            334555555555666665554       48999999998  445555665 4458999999743    455555 89999


Q ss_pred             EEECCCCe--eeeeecCCCCCceEEEEeeCCC--ccEEEEcCCCCccEEEEEEccCCccc-------ccCceEEEEeCC-
Q 019672          117 IYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSH-------CEAPLAAIVLSS-  184 (337)
Q Consensus       117 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~dg~v~i~d~~~~~~~-------~~~~i~~~~~s~-  184 (337)
                      +||+.+++  .+..+..+  ...+.++.++|+  +.++++++  .||.|++||+.+....       +..+|.+++|+| 
T Consensus        81 vwd~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             EEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             EEECCCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            99999886  44555443  345777777777  78899888  5999999999876322       348899999999 


Q ss_pred             ------------CCCEEEEEeCCCcEEEEEEcCCCc----eeEeeccCCcceeEEEEEeecC---CCcccEEEEEeCCCc
Q 019672          185 ------------NGMYIATASEQGTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATSSSGS  245 (337)
Q Consensus       185 ------------dg~~lat~s~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~l~fs~d---g~~~~~las~s~dg~  245 (337)
                                  ++++|++|+.||+ |++||++++.    .+..+.  .|...|++++|+|+   ++   +|++++.||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~---~l~s~s~Dg~  230 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRS---YLASVSQDRT  230 (753)
T ss_dssp             C---------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSE---EEEEEESSSC
T ss_pred             ccccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCC---EEEEEecCCE
Confidence                        5999999999998 6999998874    334443  34567999999999   78   9999999999


Q ss_pred             EEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          246 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       246 v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                      |+|||+..........     .. ........+          ..+.+.++++.+++++.||.+++|++++
T Consensus       231 I~iwd~~~~~~~~~~~-----~~-~~~~~~~~v----------~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          231 CIIWTQDNEQGPWKKT-----LL-KEEKFPDVL----------WRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEEESSSSSCCBCC-----BS-SSSCCSSCC----------CCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEecCCCCCCcceeE-----Ee-ccCCCCCce----------EEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999998764321100     00 000000111          1223355668999999999999999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=6.7e-24  Score=192.60  Aligned_cols=229  Identities=11%  Similarity=0.063  Sum_probs=168.0

Q ss_pred             CeEEEEEcCCCCEEE-EEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-
Q 019672            9 PVFFVSFNQDNSGFA-LSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~la-~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-   85 (337)
                      .+..+++.++++.++ +|+.+ .+++||..+++.+....... .+..+.++.+.++++.        |++|++||+.++ 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~--------~~~i~i~d~~~~~  130 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSY--------GDVISVFKFGNPW  130 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS-CEEEEEECSSEEEEEE--------TTEEEEEESSTTC
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC-ceEEEEEcCCEEEEEE--------cCEEEEEECCCCc
Confidence            477888999988875 45554 57999999998887765432 4455666777766553        679999999988 


Q ss_pred             CEEEEEEcCCceeEEEEcCCeEEEE-E--CCeEEEEECCCCe---------------e-eeeecCCCCCceEEEEeeCCC
Q 019672           86 TALRELNFLTSILAVRLNKKRLVIV-L--REKTYIYDANTLA---------------I-LDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~v~-~--d~~i~i~d~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      +.+..+..  +...+.++++.++++ +  ++.|++||+++++               + +..+..|  ...+.+++++|+
T Consensus       131 ~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~  206 (355)
T 3vu4_A          131 KRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRK  206 (355)
T ss_dssp             CBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTT
T ss_pred             eeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCC
Confidence            66555444  333445566777776 2  7899999998765               1 4555544  346778888889


Q ss_pred             ccEEEEcCCCCccE-EEEEEccCCccc-------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE--eecc-
Q 019672          147 ACFLAVPASTTKGS-VLVYNVMELHSH-------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRR-  215 (337)
Q Consensus       147 ~~~la~~~~~~dg~-v~i~d~~~~~~~-------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~--~~~~-  215 (337)
                      +.+||+++  .||+ |++||+.+++..       |..+|++++|+|||++||+++.||+ |+|||+.++....  .+.. 
T Consensus       207 g~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          207 SDMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             SSEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTT
T ss_pred             CCEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccce
Confidence            99999998  5998 999999987642       4578999999999999999999998 6999997664211  1100 


Q ss_pred             ------------------CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          216 ------------------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       216 ------------------~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                        .........++|+|||+   +|++++.||.+++|++....+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~---~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS---LVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---EEEEETTTTEEEEEEEEEETT
T ss_pred             eeccccccccceeEEEeccCCCCCceEEEEeCCCC---EEEEEeCCCeEEEEEEEcCCC
Confidence                              00111236689999999   999999999999999876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=2.9e-23  Score=184.06  Aligned_cols=212  Identities=10%  Similarity=0.080  Sum_probs=139.1

Q ss_pred             CceEEEEECCCC---CEEEEEEcCC-ceeEE-------------------------EEcCC----eEEEEE---------
Q 019672           74 PRRLCLFNTTTG---TALRELNFLT-SILAV-------------------------RLNKK----RLVIVL---------  111 (337)
Q Consensus        74 d~~v~iwd~~~~---~~~~~~~~~~-~v~~i-------------------------~~~~~----~~~v~~---------  111 (337)
                      ..+|++|+...+   +.+.++.+++ +|..|                         +++++    +..++.         
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~  141 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLG  141 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEe
Confidence            689999999998   6777777665 44444                         44444    222221         


Q ss_pred             --------------CCeEEEEEC-CCCeeeeeecCCCCCceEEEEee-CCCccEEEEcCCCCccEEEEEEccCCccccc-
Q 019672          112 --------------REKTYIYDA-NTLAILDTIDTVPNLKGLCAFSP-SLNACFLAVPASTTKGSVLVYNVMELHSHCE-  174 (337)
Q Consensus       112 --------------d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-  174 (337)
                                    |+.|++|++ .+++.+..+..+.....++++++ .+++.+|++++  .|++|+|||+.+++..++ 
T Consensus       142 l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS--~D~TIkIWDl~TGk~l~tL  219 (356)
T 2w18_A          142 LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT--IMNNIVIWNLKTGQLLKKM  219 (356)
T ss_dssp             ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE--TTSEEEEEETTTCCEEEEE
T ss_pred             cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec--CCCcEEEEECCCCcEEEEE
Confidence                          445666666 33544444444444455666666 55677888887  599999999999886543 


Q ss_pred             -------CceEEEEeCCCCCEE------------EEEeCCCcEEEEEEcCCCceeEeec----cCCcceeEEEEEeecCC
Q 019672          175 -------APLAAIVLSSNGMYI------------ATASEQGTIIRVFLVSEATKSYSFR----RGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       175 -------~~i~~~~~s~dg~~l------------at~s~dg~~i~vwd~~~~~~~~~~~----~~~~~~~i~~l~fs~dg  231 (337)
                             ..+.+++|+|||+++            ++|+.|++ |++||..+++.+..+.    .++ ...+.+..++  +
T Consensus       220 ~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~s--g  295 (356)
T 2w18_A          220 HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDVK--D  295 (356)
T ss_dssp             ECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETTTTEEEEEEEECCCTTC-CCCEEEEEEE--T
T ss_pred             cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECCCCEEEEEEEeeccCCC-cceeEccccC--C
Confidence                   357888999999987            66888887 6999999998876542    232 2234444444  7


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEE
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  311 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~  311 (337)
                      .   ++|+++.|++|+|||+.+++....           +......++.         .+++.|++++|++|+.||+|++
T Consensus       296 ~---~lASgS~DgTIkIWDl~tGk~l~t-----------L~gH~~~vvs---------~vafSPDG~~LaSGS~D~TIkl  352 (356)
T 2w18_A          296 H---CAAAILTSGTIAIWDLLLGQCTAL-----------LPPVSDQHWS---------FVKWSGTDSHLLAGQKDGNIFV  352 (356)
T ss_dssp             T---EEEEEETTSCEEEEETTTCSEEEE-----------ECCC--CCCC---------EEEECSSSSEEEEECTTSCEEE
T ss_pred             C---EEEEEcCCCcEEEEECCCCcEEEE-----------ecCCCCCeEE---------EEEECCCCCEEEEEECCCcEEE
Confidence            7   999999999999999987754321           1111001111         1234667799999999999999


Q ss_pred             EEE
Q 019672          312 YIF  314 (337)
Q Consensus       312 ~~~  314 (337)
                      |++
T Consensus       353 Wd~  355 (356)
T 2w18_A          353 YHY  355 (356)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            986

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=1.2e-23  Score=193.61  Aligned_cols=225  Identities=11%  Similarity=0.080  Sum_probs=142.9

Q ss_pred             EEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEE-------eeCCEEEEEEcc--------CCCEEEEEeCCCCCCCCCc
Q 019672           12 FVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-------AVGAFSIVEMLY--------SSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~d~   75 (337)
                      ...+.+++.+||+|+.|+ ++|||+.+++.....       +...+..+++.+        +...++.++       .|+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-------~D~  166 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-------DDC  166 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-------TTS
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE-------CCC
Confidence            334455667789888776 799999888654321       223455555543        223444433       599


Q ss_pred             eEEEEECCCCCEEE-EEEcCCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCC------------------
Q 019672           76 RLCLFNTTTGTALR-ELNFLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTV------------------  132 (337)
Q Consensus        76 ~v~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~------------------  132 (337)
                      +|+|||++++.++. .+.++.+|.+++|+|+.   ++++. |++|++||+++++........                  
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            99999998776654 45677899999999864   33333 899999999887554332111                  


Q ss_pred             -----CCCceEEEEee-CCCccEEEEcCCCCccEEEEEEccCCccccc-----Cce------------------EEEEeC
Q 019672          133 -----PNLKGLCAFSP-SLNACFLAVPASTTKGSVLVYNVMELHSHCE-----APL------------------AAIVLS  183 (337)
Q Consensus       133 -----~~~~~~~~~~~-~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----~~i------------------~~~~~s  183 (337)
                           .+...+.++.+ .+++..+++++  .|+++++||+...+....     ..+                  ....++
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeecccccccceeeeeecCCCCEEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                 01112223333 36778888887  599999999976543211     112                  222333


Q ss_pred             C--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          184 S--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       184 ~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |  ++.++++|+.||+ |+|||+.+++.+..+..  +..+|.+|+|||||+   +||+++++| +.+|.+.
T Consensus       325 ~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~---~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGS---HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEE--CSSCEEEEEECTTSS---EEEEEESSE-EEEEEEG
T ss_pred             cCCCCEEEEEECCCCE-EEEEECCCCcEEEEecC--CCCcEEEEEEcCCCC---EEEEEeCCC-eEEEEEe
Confidence            3  4457788889997 69999999988776643  245799999999999   999999776 6666653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=4e-23  Score=190.06  Aligned_cols=210  Identities=10%  Similarity=-0.010  Sum_probs=133.1

Q ss_pred             CCceEEEEECCCCCEEEEE------EcCCceeEEEEcC--------Ce--EEEEE-CCeEEEEECCCCeeeeeecCCCCC
Q 019672           73 SPRRLCLFNTTTGTALREL------NFLTSILAVRLNK--------KR--LVIVL-REKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~------~~~~~v~~i~~~~--------~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      .|++|+|||.++++.....      .|...|.+++|+|        +.  ++.++ |++|+|||++++..+..+..+.. 
T Consensus       109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-  187 (393)
T 4gq1_A          109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-  187 (393)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS-
T ss_pred             CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC-
Confidence            5999999999988765432      2456899999976        33  33333 89999999988876666654443 


Q ss_pred             ceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccc------------------------------ccCceEEEEeC-
Q 019672          136 KGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSH------------------------------CEAPLAAIVLS-  183 (337)
Q Consensus       136 ~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~------------------------------~~~~i~~~~~s-  183 (337)
                       .+.+++++|++. ++++++  .||+|++||+.+++..                              +...+.+++|+ 
T Consensus       188 -~v~~v~~~p~~~~~l~~~~--~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~  264 (393)
T 4gq1_A          188 -PGISVQFRPSNPNQLIVGE--RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG  264 (393)
T ss_dssp             -CEEEEEEETTEEEEEEEEE--TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred             -CcEEEEECCCCCceEEecC--CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence             466777777764 677776  5999999999876431                              12567888886 


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE------------------Eeec--CCCcccEEEEEeCC
Q 019672          184 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL------------------SFGQ--SMQFQDILVATSSS  243 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l------------------~fs~--dg~~~~~las~s~d  243 (337)
                      |||+.|++++.|++ +++||+.+++....+...  ...+..+                  .|+|  ++.   ++++|+.|
T Consensus       265 ~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~sgs~D  338 (393)
T 4gq1_A          265 SDGSGILAMCKSGA-WLRWNLFANNDYNEISDS--TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY---FATAHSQH  338 (393)
T ss_dssp             TTTCEEEEECTTSE-EEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTE---EEEEETTT
T ss_pred             CCCCEEEEEeCCCC-EEEEECccCCCCceEeee--cCccccEEEccccccccccCcceeEEEccCCCCE---EEEEECCC
Confidence            89999999999998 699999888765554321  1122222                  2332  333   67888999


Q ss_pred             CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEE
Q 019672          244 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       244 g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                      |+|+|||+.++.....          ...           +...+..+++.+++++|++++.+| +.+|.+
T Consensus       339 g~V~lwd~~~~~~~~~----------~~~-----------~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSI----------PIQ-----------LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TEEEEEETTCTTCCEE----------EEE-----------CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CEEEEEECCCCcEEEE----------ecC-----------CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            9999999986643221          000           001122334566778888887665 666655

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.4e-22  Score=186.62  Aligned_cols=217  Identities=9%  Similarity=0.083  Sum_probs=156.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC------CEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG------AFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .+...|++++|+|||++||+++.+| ++|||.++  ++.....+      .+..+++.+++..++.++.       |++|
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-------DGtV  153 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-------DGEL  153 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-------TSEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-------CCEE
Confidence            3477899999999999999999888 59999654  33333312      3677777788888877664       9999


Q ss_pred             EEEECCCCCE-------EEEEEc-----CCceeEEEEcCCeEEEEE-CCeEEEEECCCCee---eeeec-CCCCCceEEE
Q 019672           78 CLFNTTTGTA-------LRELNF-----LTSILAVRLNKKRLVIVL-REKTYIYDANTLAI---LDTID-TVPNLKGLCA  140 (337)
Q Consensus        78 ~iwd~~~~~~-------~~~~~~-----~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~---~~~~~-~~~~~~~~~~  140 (337)
                      +|||+++++.       +.++..     ...|.+++|+|+++++++ |++|++||+...+.   .+++. .+.  ..+.+
T Consensus       154 kIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~s  231 (588)
T 2j04_A          154 QFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASR--RKITD  231 (588)
T ss_dssp             EEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCS--SCCCC
T ss_pred             EEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeeccccc--CcEEE
Confidence            9999998863       455532     248999999999944444 89999999987763   23443 222  23444


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cccCceEEEEe--CCCCCEEEEEeCCCcEEEEEEcC------CC
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HCEAPLAAIVL--SSNGMYIATASEQGTIIRVFLVS------EA  207 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~~~~i~~~~~--s~dg~~lat~s~dg~~i~vwd~~------~~  207 (337)
                      ++++  +..+|+++   +++|++||+.+++.     .|...|..++|  +||+..|+++++||+  |+|...      ++
T Consensus       232 vaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~~~~spd~  304 (588)
T 2j04_A          232 LKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDELHVTADN  304 (588)
T ss_dssp             EEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSSEEEECCC
T ss_pred             EEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeeccEEECCCc
Confidence            4454  36888876   58999999998776     35589999999  999999999999985  889863      11


Q ss_pred             cee-------Eeecc-------CCcceeEEEEEeecCCCcccEEEEEeC
Q 019672          208 TKS-------YSFRR-------GTYPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       208 ~~~-------~~~~~-------~~~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                      +.+       +.+..       -.....|++++|||||+   .+|+++.
T Consensus       305 ~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~---~lA~~~~  350 (588)
T 2j04_A          305 IIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGY---SIAIVYD  350 (588)
T ss_dssp             SSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSS---EEEEEEE
T ss_pred             eEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCC---EEEEEEe
Confidence            110       00000       00133599999999999   8998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=7.3e-21  Score=182.10  Aligned_cols=280  Identities=15%  Similarity=0.092  Sum_probs=193.7

Q ss_pred             EEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC--CCCCEEE
Q 019672           14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT--TTGTALR   89 (337)
Q Consensus        14 ~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~--~~~~~~~   89 (337)
                      .|+|++.+++++..++ +.+||..+++++.... .+.+..+.+.+++..++.++.       |++|++||+  .+++.+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-------d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-------DARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC-------CCeEEEEECcCCCCcEEE
Confidence            4899998888887765 7999999999887766 344556667777777766654       799999999  8999999


Q ss_pred             EEEcCCceeEEEEcC----C--eEEEEE--CCeEEEEECCCCeeeeeecCCC--------CC-ceEEEEeeCCCccEEEE
Q 019672           90 ELNFLTSILAVRLNK----K--RLVIVL--REKTYIYDANTLAILDTIDTVP--------NL-KGLCAFSPSLNACFLAV  152 (337)
Q Consensus        90 ~~~~~~~v~~i~~~~----~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~la~  152 (337)
                      ++.....+..++|++    +  .++++.  +++|.+||..+++.+..+....        ++ ..+.++..++++..+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            998877889999987    4  355554  7899999999999888886532        11 14556666665555554


Q ss_pred             cCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCCCceeEeeccCC--cceeEE
Q 019672          153 PASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATKSYSFRRGT--YPSTIF  223 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~  223 (337)
                      +.. .++.|.+||+.+.+...      ...+..++|+|||++|++++. +++ |++||+.+++++..+..+.  |.....
T Consensus       297 s~~-~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          297 NVK-ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             EET-TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             EEC-CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            444 58999999998754332      255778999999998776654 666 6899999999988776432  221222


Q ss_pred             EEEeecC-CCcccEEEEEe-CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE
Q 019672          224 SLSFGQS-MQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS  301 (337)
Q Consensus       224 ~l~fs~d-g~~~~~las~s-~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~  301 (337)
                      .+ ++|+ |+   .+++++ .|++|.|||+++...+..   ....+. .++       .....   ...+.++|++++|+
T Consensus       375 ~~-~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~~---~~~~v~-~l~-------~~g~~---~~~v~~~pdg~~l~  436 (543)
T 1nir_A          375 NF-VHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQY---AWKKVA-ELQ-------GQGGG---SLFIKTHPKSSHLY  436 (543)
T ss_dssp             EE-EETTTEE---EEEEEBSSSSEEEEEECCTTTCTTT---BTSEEE-EEE-------CSCSC---CCCEECCTTCCEEE
T ss_pred             cc-CCCCCcc---EEEeccCCCceEEEEEeCCCCCchh---cCeEEE-EEE-------cCCCC---ceEEEcCCCCCcEE
Confidence            22 5787 55   677775 689999999987432210   111111 111       00000   11234467778888


Q ss_pred             EEE-------eCCcEEEEEEecCCCC
Q 019672          302 VIT-------YNGYFVEYIFSINNCC  320 (337)
Q Consensus       302 ~~~-------~dg~~~~~~~~~~~~~  320 (337)
                      +.+       .+++|.+|++++.+..
T Consensus       437 v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          437 VDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             EecCCCCCcccCceEEEEECCCCCCC
Confidence            887       3779999988765544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=7.4e-20  Score=175.12  Aligned_cols=276  Identities=12%  Similarity=0.077  Sum_probs=188.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeC--CCCcEEEEEee-CCEEEEEEcc----CCCEEEEEeCCCCCCCCCceEEEE
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDS--STGRLCYERAV-GAFSIVEMLY----SSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~--~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+.+++|+|||++|++++.++ +++||+  .+++.+..... .....+.+.+    ++..++....      .+++|.+|
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~v~  253 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAIM  253 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEEEE
Confidence            388999999999998877655 799999  78887766553 3345566766    6777665543      48999999


Q ss_pred             ECCCCCEEEEEEcC-----------C-ceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeee--eecCCCCCceEEEEe
Q 019672           81 NTTTGTALRELNFL-----------T-SILAVRLNKK--RLVIVL--REKTYIYDANTLAILD--TIDTVPNLKGLCAFS  142 (337)
Q Consensus        81 d~~~~~~~~~~~~~-----------~-~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~  142 (337)
                      |..+++++..+...           . .+.++.++++  .+++..  +++|.+||+.+.+.+.  .+....   ....+.
T Consensus       254 D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~---~~~~~~  330 (543)
T 1nir_A          254 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP---FLHDGG  330 (543)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS---SCCCEE
T ss_pred             eccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc---CccCce
Confidence            99999999887642           2 5788888863  344444  7899999998765443  343222   233446


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCC-CCEEEEEe-CCCcEEEEEEcCC-----
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSN-GMYIATAS-EQGTIIRVFLVSE-----  206 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~d-g~~lat~s-~dg~~i~vwd~~~-----  206 (337)
                      ++|++.++++++. .+++|.+||+.+++....         +....+ ++|+ |..+|+++ .|++ |+|||+.+     
T Consensus       331 ~spdg~~l~va~~-~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~~  407 (543)
T 1nir_A          331 WDSSHRYFMTAAN-NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHPQ  407 (543)
T ss_dssp             ECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTT
T ss_pred             ECCCCCEEEEEec-CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCch
Confidence            6778887765553 488999999998876432         112233 4677 66777776 5677 69999998     


Q ss_pred             --CceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-------CCCcEEEEecCCCcccCCCCccccc-ccc--ccccc
Q 019672          207 --ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-------SSGSLHVFSPGFAINQRRGGRTSSI-LGS--ILPES  274 (337)
Q Consensus       207 --~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-------~dg~v~iw~l~~~~~~~~~~~~~~~-~~~--~~~~~  274 (337)
                        ++.++++..+  ...+..|+|||||+   +|.+++       .+++|.|||+++.+....     .+ ++.  -+++.
T Consensus       408 ~~~~~v~~l~~~--g~~~~~v~~~pdg~---~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~-----~~~v~~~~~~~~~  477 (543)
T 1nir_A          408 YAWKKVAELQGQ--GGGSLFIKTHPKSS---HLYVDTTFNPDARISQSVAVFDLKNLDAKYQ-----VLPIAEWADLGEG  477 (543)
T ss_dssp             TBTSEEEEEECS--CSCCCCEECCTTCC---EEEECCTTCSSHHHHTCEEEEETTCTTSCCE-----EECHHHHHCCCSS
T ss_pred             hcCeEEEEEEcC--CCCceEEEcCCCCC---cEEEecCCCCCcccCceEEEEECCCCCCCeE-----EeechhhcccCCC
Confidence              7888888632  23467799999999   999987       277999999987654210     00 000  01111


Q ss_pred             ceeecccccceeeeeccCCCcccCEEEEEE-----eCCcEEEEEEec
Q 019672          275 VNEVLDPADHHVLRNAFPAGVKRASVSVIT-----YNGYFVEYIFSI  316 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~~~~~~~~~  316 (337)
                      ...+|.+          .+.++++.|++..     .|+.|.+|+..+
T Consensus       478 ~~~~~~~----------~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          478 AKRVVQP----------EYNKRGDEVWFSVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             CCEEEEE----------EECSSSSEEEEEEECCTTSCCEEEEEETTT
T ss_pred             CCceEec----------cCCCCCCEEEEEeecCCCCCCeEEEEECCC
Confidence            1223333          3467778888774     379999976543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=3.3e-20  Score=171.92  Aligned_cols=235  Identities=12%  Similarity=0.021  Sum_probs=159.4

Q ss_pred             CCeEEEEEcCCCC-EEEEEc----CCc-----eEEEeC--CCCcEEEE--EeeCCEEEEEEcc----------------C
Q 019672            8 YPVFFVSFNQDNS-GFALST----KDG-----FKIFDS--STGRLCYE--RAVGAFSIVEMLY----------------S   57 (337)
Q Consensus         8 ~~v~~~~fs~dg~-~la~g~----~~g-----~~vw~~--~~~~~~~~--~~~~~~~~~~~~~----------------~   57 (337)
                      .++...+|++.|. ++++|+    .+|     +++||+  .+++++..  ...+...+..+.+                .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4678888998885 565775    344     699999  88887644  2222111111111                1


Q ss_pred             CCEEEEEeCCCCCCCCC---ceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-C---CeEEEEECCCCeeeee
Q 019672           58 SSLLAIVGAGEQPSLSP---RRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-R---EKTYIYDANTLAILDT  128 (337)
Q Consensus        58 ~~~~~~~~~g~~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d---~~i~i~d~~~~~~~~~  128 (337)
                      ...+++++...    .+   ++|++||+..+.......+...+.+++|+|++  ++.+. +   ..|++||+.+++... 
T Consensus       143 ~~~l~~~s~~~----~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-  217 (415)
T 2hqs_A          143 RTRIAYVVQTN----GGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-  217 (415)
T ss_dssp             TCEEEEEEECS----SSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-
T ss_pred             CCEEEEEEecC----CCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-
Confidence            45566665421    13   79999999865544444566789999999875  44444 4   389999999887653 


Q ss_pred             ecCCCCCceEEEEeeCCCccEEEEcCC-CCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCC-Cc-EEEE
Q 019672          129 IDTVPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQ-GT-IIRV  201 (337)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~la~~~~-~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~d-g~-~i~v  201 (337)
                      +..+  ...+.+++++|++..|++.+. +.+..|.+||+.+++..    +...+.+++|+|||++|++++.+ |. .|.+
T Consensus       218 l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          218 VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            3332  235667788889988884432 12345999999876542    23679999999999999988864 42 2577


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCCc
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI  255 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~~  255 (337)
                      ||+.+++.. .+..  +...+.+++|||||+   +|++++.+   +.|++||+.+..
T Consensus       296 ~d~~~~~~~-~l~~--~~~~~~~~~~spdG~---~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          296 VNINGGAPQ-RITW--EGSQNQDADVSSDGK---FMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             EETTSSCCE-ECCC--SSSEEEEEEECTTSS---EEEEEEECSSCEEEEEEETTTCC
T ss_pred             EECCCCCEE-EEec--CCCcccCeEECCCCC---EEEEEECcCCceEEEEEECCCCC
Confidence            899887643 3322  234688999999999   88888765   589999998654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=9.6e-19  Score=157.14  Aligned_cols=231  Identities=9%  Similarity=0.041  Sum_probs=171.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC--------ceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            8 YPVFFVSFNQDNSGFALSTKD--------GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~--------g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ..+..++|+|||++++++..+        .+.+||..+++.+..... .....+.+.++.+.+++...      .++.|.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~  114 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNT------VNSAVT  114 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEET------TTTEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEec------CCCEEE
Confidence            457889999999988877632        479999999987766543 22334566677776666554      478999


Q ss_pred             EEECCCCCEEEEEEcCC----------ceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           79 LFNTTTGTALRELNFLT----------SILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~----------~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                      +||.++++.+..+..+.          .+.++.++++  .++++.   ++.|.+||+.+++.+..+......  ...+.+
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM--STGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT--CCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc--cceEEE
Confidence            99999999988887643          2677888765  466655   578999999999888887632221  223455


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCccccc---------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCE---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +|++..+++++  .++.|.+||+.+++....         ..+..++|+|+|++|+.++.+...|.+||+.+++.+..+.
T Consensus       193 s~dg~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          193 DSEGKRLYTTN--ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             ETTTTEEEEEC--TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEEEEEc--CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            66777887776  489999999988765432         3577899999999888777663347899999999888776


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCc
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI  255 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~  255 (337)
                      .+.    ...++|+|||+   +++++. .+++|.+||+.+.+
T Consensus       271 ~~~----~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          271 APE----SLAVLFNPARN---EAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             CSS----CCCEEEETTTT---EEEEEETTTTEEEEEETTTTE
T ss_pred             cCC----CceEEECCCCC---EEEEEECCCCeEEEEECCCCe
Confidence            432    14689999998   665555 68999999987654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=2.8e-19  Score=159.55  Aligned_cols=273  Identities=10%  Similarity=0.043  Sum_probs=178.1

Q ss_pred             EEEcCCCCE-EEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE-
Q 019672           13 VSFNQDNSG-FALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-   87 (337)
Q Consensus        13 ~~fs~dg~~-la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~-   87 (337)
                      ..|.+++.. ++++..++ +.+||.++++.+.....  ... .+.+.++.+.+++++.      .+++|.+||+.+++. 
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD------FCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES------TTCEEEEEECSSSSCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC------CCCeEEEEECCCCcee
Confidence            356777766 55555544 79999999988665543  223 5666667776666655      378999999999987 


Q ss_pred             EEEEEcCCceeE-EEEcCCe--EEEEECC----eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           88 LRELNFLTSILA-VRLNKKR--LVIVLRE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        88 ~~~~~~~~~v~~-i~~~~~~--~~v~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      ...+........ +.+++++  +++..++    .|.+||+.+++.+..+.....   ...+.++|++.++++++. .++.
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~-~~~~  151 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---AVGIAISPNGNGLILIDR-SSAN  151 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---EEEEEECTTSSCEEEEEE-TTTT
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---ccceEECCCCCEEEEEec-CCCc
Confidence            666666665555 8898764  4432233    899999999988887765433   356677778776655543 3567


Q ss_pred             -EEEEEccCCccc---------ccCceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCce---eEeeccCCcceeEEEEE
Q 019672          161 -VLVYNVMELHSH---------CEAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLS  226 (337)
Q Consensus       161 -v~i~d~~~~~~~---------~~~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~l~  226 (337)
                       |.+|++......         ....+..++|+|||++|+.++ .++. |++||+.+++.   +..+..+   ..+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~~---~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGTN---NLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEECS---SCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccCC---CCCceEE
Confidence             999998643221         115689999999999766655 4665 79999999988   6666533   3467899


Q ss_pred             eecCCCcccEEEEEe-CCCcEEEEecCCCcccCCCCccccccccc--ccccceeecccccceeeeeccCCCcccCEEEEE
Q 019672          227 FGQSMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSI--LPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  303 (337)
Q Consensus       227 fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~  303 (337)
                      |+|||+   +|++++ .++.|.+||+++.+....    ..+....  .+...   ..       .+.+.+.+++++|++.
T Consensus       228 ~spdg~---~l~v~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~~~---~~-------~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          228 VSRDGS---TVYVLTESTVDVFNFNQLSGTLSFV----KSFGHGLLIDPRPL---FG-------ANQMALNKTETKLFIS  290 (331)
T ss_dssp             ECTTSS---EEEEECSSEEEEEEEETTTTEEEEE----EEEECCCCCCCGGG---TT-------CCCEEECTTSSEEEEE
T ss_pred             ECCCCC---EEEEEEcCCCEEEEEECCCCceeee----cccccccccCCCCc---cc-------ccceEECCCCCEEEEe
Confidence            999999   776665 578899999976543110    0000000  00000   00       0123446677888776


Q ss_pred             Ee-CCcEEEEEEecC
Q 019672          304 TY-NGYFVEYIFSIN  317 (337)
Q Consensus       304 ~~-dg~~~~~~~~~~  317 (337)
                      +. +|.+.+|++...
T Consensus       291 ~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          291 ANISRELKVFTISGK  305 (331)
T ss_dssp             ETTTTEEEEEETTSC
T ss_pred             cCCCCcEEEEEecCC
Confidence            66 569999998543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.86  E-value=4.3e-19  Score=158.35  Aligned_cols=234  Identities=12%  Similarity=0.097  Sum_probs=161.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--CceEEEeCCCCcE-EEEEee-CCEEE-EEEccCCCEEEEEeCCCCCCCCCc--eEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTK--DGFKIFDSSTGRL-CYERAV-GAFSI-VEMLYSSSLLAIVGAGEQPSLSPR--RLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~--~g~~vw~~~~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~--~v~i   79 (337)
                      ..+. +++|+|||++++++..  +.+.+||+++++. ...... ..... +.+.++++.++ ++.+     .++  .|.+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~-----~~~~~~i~v  112 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTG-----LNHPFNMQS  112 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCC-----SSSSCEEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecC-----CCCcccEEE
Confidence            3445 9999999997665543  3579999999886 444332 22333 56777777777 4432     123  9999


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCe-EEEEECCCCeee-----eeecCCCCCceEEEEeeCCCccE
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REK-TYIYDANTLAIL-----DTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~-i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      ||+.+++.+..+.......++.+++++  ++++.  ++. +.+|++.....+     ..+..   ......+.++|++.+
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~  189 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNF  189 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---CCCccceEECCCCCE
Confidence            999999998888887788999999874  55554  467 999998754322     22221   223456677788876


Q ss_pred             EEEcCCCCccEEEEEEccCCcc---ccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeeccC--Cc
Q 019672          150 LAVPASTTKGSVLVYNVMELHS---HCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRG--TY  218 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~---~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~~--~~  218 (337)
                      +++++. .++.|.+||+.+++.   ...    ..+..++|+|||++|+.++.....|.+||+.+++.  +..+..+  .+
T Consensus       190 l~v~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  268 (331)
T 3u4y_A          190 AFVANL-IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID  268 (331)
T ss_dssp             EEEEET-TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred             EEEEeC-CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence            665553 489999999988776   332    66789999999998777665333478999999887  4433322  11


Q ss_pred             cee---EEEEEeecCCCcccEEEEEe-CCCcEEEEecCCC
Q 019672          219 PST---IFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFA  254 (337)
Q Consensus       219 ~~~---i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~  254 (337)
                      ...   ...++|+|||+   +|++++ .+++|+|||+...
T Consensus       269 ~~~~~~~~~~~~spdg~---~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          269 PRPLFGANQMALNKTET---KLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CGGGTTCCCEEECTTSS---EEEEEETTTTEEEEEETTSC
T ss_pred             CCCcccccceEECCCCC---EEEEecCCCCcEEEEEecCC
Confidence            111   35689999999   775554 5679999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=1.4e-19  Score=179.28  Aligned_cols=231  Identities=10%  Similarity=0.034  Sum_probs=165.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-Cc------eEEEeCCCCcEEEEEee--CC------------------------EEEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTK-DG------FKIFDSSTGRLCYERAV--GA------------------------FSIVE   53 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~-~g------~~vw~~~~~~~~~~~~~--~~------------------------~~~~~   53 (337)
                      ...|.+++|+|||++|++++. ++      +++||+++++.......  ..                        +..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999998876 54      69999999876543322  11                        34456


Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCC---CEEEEEEcCCceeEEEEcCCe--EEEEECCeEEEEECCCCeeeee
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG---TALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDT  128 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~---~~~~~~~~~~~v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~  128 (337)
                      +.+++..+++.+.        ++|.+||+.++   +......+...+..+.|+|++  ++.+.++.|++||+.+++....
T Consensus       116 ~SpDg~~l~~~~~--------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSPDAQRLLFPLG--------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECTTSSEEEEEET--------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             ECCCCCEEEEEeC--------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            7777777777653        79999999988   543333344678999999876  4445588999999998876544


Q ss_pred             ecCCCCCc--------------eEEEEeeCCCccEEEEcCCCCcc---------------------------------EE
Q 019672          129 IDTVPNLK--------------GLCAFSPSLNACFLAVPASTTKG---------------------------------SV  161 (337)
Q Consensus       129 ~~~~~~~~--------------~~~~~~~~~~~~~la~~~~~~dg---------------------------------~v  161 (337)
                      ........              ...++.++||+.+|++++.  |+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            33221100              0244667788888888752  33                                 78


Q ss_pred             EEEEccC-Cccc-------ccCceEEEEeCCCCCEEEEEeC-----CCcEEEEEEcCCCceeEeeccCCcce---eEEEE
Q 019672          162 LVYNVME-LHSH-------CEAPLAAIVLSSNGMYIATASE-----QGTIIRVFLVSEATKSYSFRRGTYPS---TIFSL  225 (337)
Q Consensus       162 ~i~d~~~-~~~~-------~~~~i~~~~~s~dg~~lat~s~-----dg~~i~vwd~~~~~~~~~~~~~~~~~---~i~~l  225 (337)
                      .+||+.+ ++..       +...+..++| |||++|+.++.     +.. |++||+.+++....+... ...   .+.++
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHET-SPTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcC-CCCcCCcCCce
Confidence            8899987 6532       2356899999 99999998764     344 689999999876555322 111   34578


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +|||||+   ++++++.||+++||.++.
T Consensus       343 ~~spdg~---~~~~~~~~g~~~l~~~~~  367 (741)
T 2ecf_A          343 RFLDDGS---ILWSSERTGFQHLYRIDS  367 (741)
T ss_dssp             EECTTSC---EEEEECTTSSCEEEEECS
T ss_pred             EECCCCe---EEEEecCCCccEEEEEcC
Confidence            9999999   999999999999998763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=5.9e-19  Score=157.24  Aligned_cols=235  Identities=9%  Similarity=0.036  Sum_probs=166.7

Q ss_pred             CeEEEEEcCCCCEEE-EEcCC-ceEEEeCCCCcEEEEEeeC-------CEEEEEEccCCCEEEEEeCCC---CCCC--CC
Q 019672            9 PVFFVSFNQDNSGFA-LSTKD-GFKIFDSSTGRLCYERAVG-------AFSIVEMLYSSSLLAIVGAGE---QPSL--SP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la-~g~~~-g~~vw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~---~~~~--~d   74 (337)
                      .+.+++|+|||++++ ++..+ .+.+||+.+++.+......       ....+.+.++++.++++..+.   ...+  .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            477899999998765 44444 4799999999876554421       223456666676766654110   0001  26


Q ss_pred             ceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE-EEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKRL-VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~-~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      +.|.+||+.+++.+..+.....+.++.++++.- ++..++.|++||+.+++.+..+.........   .++|++..++..
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeee
Confidence            899999999998888888777788888987652 3333889999999999887777544311111   334555555444


Q ss_pred             CCCCcc-----------------------EEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEc
Q 019672          154 ASTTKG-----------------------SVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       154 ~~~~dg-----------------------~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~  204 (337)
                      +. .++                       .|.+||+.+++..      +...+.+++|+|||++|+++  ++. |++||+
T Consensus       192 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~  267 (337)
T 1pby_B          192 HE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             CT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             cc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEEC
Confidence            32 223                       4789999887653      12467889999999999988  566 689999


Q ss_pred             CCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          205 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .+++.+..+..+   ..+.+++|+|||+   +|++++.++.|++||+++.+.
T Consensus       268 ~~~~~~~~~~~~---~~~~~~~~s~dg~---~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          268 EKNASIKRVPLP---HSYYSVNVSTDGS---TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             TTTEEEEEEECS---SCCCEEEECTTSC---EEEEESBSSEEEEEETTTCCE
T ss_pred             CCCcCcceecCC---CceeeEEECCCCC---EEEEEcCCCcEEEEECcCCcE
Confidence            999888777543   2467899999999   899999999999999987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.84  E-value=3.1e-18  Score=152.96  Aligned_cols=267  Identities=12%  Similarity=0.104  Sum_probs=168.0

Q ss_pred             EEEEcC-CceEEEeCC-CCc--EEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--CCCE--EEEEE
Q 019672           22 FALSTK-DGFKIFDSS-TGR--LCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTA--LRELN   92 (337)
Q Consensus        22 la~g~~-~g~~vw~~~-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--~~~~--~~~~~   92 (337)
                      ++++.. +.+++|+++ +++  .+.... ...+..+.+.++.+.+++++.      .++.|.+|++.  +++.  +..+.
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec------CCCeEEEEEecCCCCceeeccccc
Confidence            444354 457999985 343  222222 234455677777777776665      25899999987  5553  34555


Q ss_pred             cCCceeEEEEcCCe--EEEEE--CCeEEEEECC---CCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672           93 FLTSILAVRLNKKR--LVIVL--REKTYIYDAN---TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus        93 ~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      ....+..+++++++  ++++.  ++.|.+||+.   ..+.+..+.....   +.++.++|++.++++++. .++.|.+||
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~v~~~d  157 (343)
T 1ri6_A           82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPAL-KQDRICLFT  157 (343)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEG-GGTEEEEEE
T ss_pred             cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC---ceEEEECCCCCEEEEecC-CCCEEEEEE
Confidence            55678889998764  55555  6789999994   3344445443332   344556677777776653 489999999


Q ss_pred             ccC-Cccc----------ccCceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCC--Cce--eEeec---cCC-cceeEEEE
Q 019672          166 VME-LHSH----------CEAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSE--ATK--SYSFR---RGT-YPSTIFSL  225 (337)
Q Consensus       166 ~~~-~~~~----------~~~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~--~~~--~~~~~---~~~-~~~~i~~l  225 (337)
                      +.+ ++..          ....+.+++|+|+|++|+.++ .++. |++||+..  ++.  +..+.   .+. ....+.++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            987 4321          114788999999999776665 6666 69999953  432  22221   111 12246789


Q ss_pred             EeecCCCcccEEE-EEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          226 SFGQSMQFQDILV-ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       226 ~fs~dg~~~~~la-s~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      +|+|||+   +|+ ++..++.|++|+++......      .... .++..    ..       ...+.+.+++++|++++
T Consensus       237 ~~s~dg~---~l~v~~~~~~~i~v~d~~~~~~~~------~~~~-~~~~~----~~-------~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          237 HITPDGR---HLYACDRTASLITVFSVSEDGSVL------SKEG-FQPTE----TQ-------PRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             EECTTSS---EEEEEETTTTEEEEEEECTTSCCE------EEEE-EEECS----SS-------CCCEEECTTSSEEEEEC
T ss_pred             EECCCCC---EEEEEecCCCEEEEEEEcCCCCce------EEee-eecCC----Cc-------cceEEECCCCCEEEEec
Confidence            9999998   666 55578999999997422100      0000 00000    00       01223355668888888


Q ss_pred             -eCCcEEEEEEecCCCC
Q 019672          305 -YNGYFVEYIFSINNCC  320 (337)
Q Consensus       305 -~dg~~~~~~~~~~~~~  320 (337)
                       .+|.+.+|.++.+.+.
T Consensus       296 ~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          296 QKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             TTTCEEEEEEEETTTTE
T ss_pred             CCCCeEEEEEEcCCCce
Confidence             5899999999987765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=6.3e-19  Score=157.06  Aligned_cols=256  Identities=12%  Similarity=0.070  Sum_probs=174.7

Q ss_pred             CEEEEEcCC-ceEEEeCCCCcEEEEEeeC----CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC
Q 019672           20 SGFALSTKD-GFKIFDSSTGRLCYERAVG----AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        20 ~~la~g~~~-g~~vw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      ++|++++.+ .+.+||+.+++.+.....+    ....+.+.++.+.++++..      .++.|.+||+.+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC------CCCeEEEEECCCCCeEeeEEcC
Confidence            356666655 4799999999887665533    2455667777766666554      4789999999999988888764


Q ss_pred             C------ceeEEEEcCCe--EEEEE-------------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           95 T------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        95 ~------~v~~i~~~~~~--~~v~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .      .+..+.+++++  ++++.             ++.|.+||+.+++.+..+.....+   ..+.++|++.+++++
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI---TMLAWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC---CCEEECTTSSCEEEE
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCc---ceeEECCCCCEEEEe
Confidence            4      67778888754  55553             589999999998888777653332   334566777777766


Q ss_pred             CCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcE-----------------------EEEEEcCC
Q 019672          154 ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTI-----------------------IRVFLVSE  206 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~-----------------------i~vwd~~~  206 (337)
                          ++.|.+||+.+++....    .....++|+|||++|+.++..+..                       |.+||+.+
T Consensus       153 ----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  228 (337)
T 1pby_B          153 ----GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET  228 (337)
T ss_dssp             ----SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred             ----CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence                36799999988765422    111234789999977666544332                       47999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccccccee
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  286 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  286 (337)
                      ++.. .+....+...+.+++|+|||+   +|+++  ++.|++||+++.+....       +.  .+..   .+       
T Consensus       229 ~~~~-~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~v~~~d~~~~~~~~~-------~~--~~~~---~~-------  283 (337)
T 1pby_B          229 GEMA-MREVRIMDVFYFSTAVNPAKT---RAFGA--YNVLESFDLEKNASIKR-------VP--LPHS---YY-------  283 (337)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECTTSS---EEEEE--ESEEEEEETTTTEEEEE-------EE--CSSC---CC-------
T ss_pred             CCce-EeecCCCCCceeeEEECCCCC---EEEEe--CCeEEEEECCCCcCcce-------ec--CCCc---ee-------
Confidence            8875 332222334578899999999   88888  78999999876543211       00  0000   11       


Q ss_pred             eeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          287 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                         .+.+.+++++|++++.+|.+++|++.+
T Consensus       284 ---~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          284 ---SVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ---EEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ---eEEECCCCCEEEEEcCCCcEEEEECcC
Confidence               122355668899999999999997643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=7.5e-18  Score=156.00  Aligned_cols=221  Identities=15%  Similarity=0.069  Sum_probs=158.2

Q ss_pred             CCEEEEEcC-------CceEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           19 NSGFALSTK-------DGFKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        19 g~~la~g~~-------~g~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      ++.++.++.       ..+++||++.+... +..+...+..+.+.++++.+++++..    ..+.+|++||+++++....
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~----~~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE----SGRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECT----TSSCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEec----CCCcEEEEEECCCCcEEEe
Confidence            556554443       24699999865432 23334567777888888888887752    0135999999999988765


Q ss_pred             EEcCCceeEEEEcCCe--EEEEE--C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc--EEE
Q 019672           91 LNFLTSILAVRLNKKR--LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG--SVL  162 (337)
Q Consensus        91 ~~~~~~v~~i~~~~~~--~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg--~v~  162 (337)
                      ..+...+.+++|+|++  ++++.  +  ..|++||+.+++. ..+..+  ...+.+++++|++.+|++.+. .++  .|.
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~-~~g~~~i~  294 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSD-QAGRPQVY  294 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEEC-TTSSCEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEEC-CCCCcEEE
Confidence            5566789999999875  44333  3  3699999988765 344333  234667788888988887763 244  688


Q ss_pred             EEEccCCccc----ccCceEEEEeCCCCCEEEEEeCC-C-cEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672          163 VYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQ-G-TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       163 i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~d-g-~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~  236 (337)
                      +||+.+++..    +...+.+++|+|||++|++++.+ | ..|++||+.+++.. .+..+  . .+.+++|+|||+   +
T Consensus       295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~--~-~~~~~~~spdg~---~  367 (415)
T 2hqs_A          295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST--F-LDETPSLAPNGT---M  367 (415)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS--S-SCEEEEECTTSS---E
T ss_pred             EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC--C-CcCCeEEcCCCC---E
Confidence            8898876532    22678899999999999998875 2 24789999988763 34322  2 688999999999   8


Q ss_pred             EEEEeCCC---cEEEEecCCC
Q 019672          237 LVATSSSG---SLHVFSPGFA  254 (337)
Q Consensus       237 las~s~dg---~v~iw~l~~~  254 (337)
                      |++++.++   .|++||++..
T Consensus       368 l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          368 VIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             EEEEEEETTEEEEEEEETTSC
T ss_pred             EEEEEcCCCccEEEEEECCCC
Confidence            99988887   7999998744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=1.8e-18  Score=154.44  Aligned_cols=232  Identities=13%  Similarity=0.113  Sum_probs=157.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--ceEEEeCC--CCcE--EEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD--GFKIFDSS--TGRL--CYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~--g~~vw~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +...+.+++|+|+|++|+++..+  .+.+|+++  +++.  +..... .....+.+.++.+.+++.+.      .++.|.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~  109 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVS  109 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEE
Confidence            44567889999999988877663  47999987  5553  223322 23445667777777766654      478999


Q ss_pred             EEEC---CCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCC-Ceeee----eecCCCCCceEEEEeeCCC
Q 019672           79 LFNT---TTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANT-LAILD----TIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        79 iwd~---~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  146 (337)
                      +||+   .+.+.+..+.....+.++.++++.  ++++.  ++.|.+||+.+ ++...    .+.... ......+.++|+
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTT
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCC
Confidence            9999   444455556556678889998764  55554  78999999987 54322    222221 124456677888


Q ss_pred             ccEEEEcCCCCccEEEEEEccC--Cccc-----c--------cCceEEEEeCCCCCEEEEEe-CCCcEEEEEEcC--CC-
Q 019672          147 ACFLAVPASTTKGSVLVYNVME--LHSH-----C--------EAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVS--EA-  207 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~--~~~~-----~--------~~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~--~~-  207 (337)
                      +.++++++. .++.|.+||+..  +...     .        ...+..++|+|+|++|+.+. .++. |++||+.  ++ 
T Consensus       189 g~~l~~~~~-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~  266 (343)
T 1ri6_A          189 EQYAYCVNE-LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV  266 (343)
T ss_dssp             SSEEEEEET-TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred             CCEEEEEeC-CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCc
Confidence            887665543 489999999953  2211     1        02466899999999887554 6776 6999998  33 


Q ss_pred             -ceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecC
Q 019672          208 -TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPG  252 (337)
Q Consensus       208 -~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~  252 (337)
                       +.+..+..+   ..+.+++|+|||+   +|++++ .++.|+||+++
T Consensus       267 ~~~~~~~~~~---~~~~~~~~s~dg~---~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          267 LSKEGFQPTE---TQPRGFNVDHSGK---YLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEEEECS---SSCCCEEECTTSS---EEEEECTTTCEEEEEEEE
T ss_pred             eEEeeeecCC---CccceEEECCCCC---EEEEecCCCCeEEEEEEc
Confidence             334444322   1277899999999   888887 67999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=6.8e-19  Score=157.75  Aligned_cols=225  Identities=8%  Similarity=0.058  Sum_probs=159.5

Q ss_pred             EEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC---CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           12 FVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      .+++++++.++++++.++ +.+||+.+++.+.....+   ....+.+.++++.++++..      .++.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcE
Confidence            457888988888877655 799999999877665433   2445667777766655554      478999999999998


Q ss_pred             EEEEEcCC-------ceeEEEEcCC--eEEEEE-C------------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCC
Q 019672           88 LRELNFLT-------SILAVRLNKK--RLVIVL-R------------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        88 ~~~~~~~~-------~v~~i~~~~~--~~~v~~-d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      +..+....       .+..+.++++  .++++. +            +.|.+||+.+++....+.....+..+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~  157 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  157 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence            88777543       2678889876  455555 3            899999998754333221111222344556677


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccccc---C-----------------------------------------------
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSHCE---A-----------------------------------------------  175 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~~~---~-----------------------------------------------  175 (337)
                      ++. +++.+    +.|.+||+.+++....   .                                               
T Consensus       158 dg~-l~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  232 (349)
T 1jmx_B          158 DGS-LYVAG----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL  232 (349)
T ss_dssp             TSC-EEEES----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred             CCc-EEEcc----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence            777 44443    2399999877653211   1                                               


Q ss_pred             -----------------------ceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          176 -----------------------PLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       176 -----------------------~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                                             .+.+++|+| ||++|+++  ++. |.+||+.+++.+..+..+.   .+.+++|+|||
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg  306 (349)
T 1jmx_B          233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLDH---TYYCVAFDKKG  306 (349)
T ss_dssp             EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECSS---CCCEEEECSSS
T ss_pred             eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCCC---CccceEECCCC
Confidence                                   345677889 99999988  666 6899999999887775332   36789999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCcc
Q 019672          232 QFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +   +|++++.++.|++||+++.+.
T Consensus       307 ~---~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          307 D---KLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             S---CEEEESBSSEEEEEETTTTEE
T ss_pred             C---EEEEecCCCeEEEEeccccce
Confidence            8   788888899999999976543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=5.1e-19  Score=174.58  Aligned_cols=238  Identities=11%  Similarity=-0.014  Sum_probs=161.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCC-----EEEEEEccCCCEEEEEeCCCCC--CCCCceEEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGA-----FSIVEMLYSSSLLAIVGAGEQP--SLSPRRLCLF   80 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~--~~~d~~v~iw   80 (337)
                      ..+.+++|+|||++++++.++.+++||+.+++.......+.     +..+.+.++++.+++.+.....  ...++.+.+|
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            44778999999998777544557999999987655444332     6667888888888887653211  1235899999


Q ss_pred             ECCCCCEEEEEEcC----CceeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCc----------------eE
Q 019672           81 NTTTGTALRELNFL----TSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLK----------------GL  138 (337)
Q Consensus        81 d~~~~~~~~~~~~~----~~v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------~~  138 (337)
                      |+.+++. ..+...    ..+..+.|+|++  ++.+.++.|++||+.+++.......+....                ..
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9999876 333221    137778898765  555668899999998876655443322111                12


Q ss_pred             EEEeeCCCccEEEEcCCCC--------------------------------ccEEEEEEccCCcccc-----------cC
Q 019672          139 CAFSPSLNACFLAVPASTT--------------------------------KGSVLVYNVMELHSHC-----------EA  175 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~--------------------------------dg~v~i~d~~~~~~~~-----------~~  175 (337)
                      .++.++||+..|++.+.+.                                +..|.+||+.+++...           ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            5677888998988875210                                2389999998776311           24


Q ss_pred             ceEEEEeCCCCCEEEEEeCCC---cEEEEEEcCCCceeEeeccCCcceeE----EEEEeecCCCcccEEEE--EeCCC--
Q 019672          176 PLAAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTI----FSLSFGQSMQFQDILVA--TSSSG--  244 (337)
Q Consensus       176 ~i~~~~~s~dg~~lat~s~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i----~~l~fs~dg~~~~~las--~s~dg--  244 (337)
                      .+.+++|||||++|++.+..+   ..|++||+.+++....+... +...+    .+++|||||+   +|+.  +..++  
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~  331 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGR---KFFFIRAIPQGGR  331 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSC---SEEEEEEECCSSS
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCC---eEEEEEecccCCC
Confidence            688999999999998776432   34789999999876544321 11222    3689999999   6664  45667  


Q ss_pred             --c--EEEEe
Q 019672          245 --S--LHVFS  250 (337)
Q Consensus       245 --~--v~iw~  250 (337)
                        .  |.+||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence              4  55555

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=1.7e-18  Score=170.62  Aligned_cols=229  Identities=11%  Similarity=0.035  Sum_probs=154.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE--EEEEee------------------CCEEEEEEccCCCEEEEEeCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL--CYERAV------------------GAFSIVEMLYSSSLLAIVGAGE   68 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~g~   68 (337)
                      .+..++|.  |+.++.+..+++ +||+.+++.  ..-...                  ..+..+.+.++ ..+++..   
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~---   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT---   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred             cCCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence            34556777  666666677779 999998865  221111                  24556666666 5555543   


Q ss_pred             CCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEECCeEEEEECCC-----CeeeeeecCCCCCc-----
Q 019672           69 QPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANT-----LAILDTIDTVPNLK-----  136 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d~~i~i~d~~~-----~~~~~~~~~~~~~~-----  136 (337)
                           +++|++||+.+++..........+.+++|+|++  ++.+.++.|++||+.+     ++............     
T Consensus       100 -----~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  174 (706)
T 2z3z_A          100 -----QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA  174 (706)
T ss_dssp             -----TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred             -----CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence                 589999999998776655566678888998875  5555599999999988     76554332221100     


Q ss_pred             -------eEEEEeeCCCccEEEEcCC-------------------------------CCccEEEEEEccCCccc------
Q 019672          137 -------GLCAFSPSLNACFLAVPAS-------------------------------TTKGSVLVYNVMELHSH------  172 (337)
Q Consensus       137 -------~~~~~~~~~~~~~la~~~~-------------------------------~~dg~v~i~d~~~~~~~------  172 (337)
                             .+.++.++||+.+|++++.                               ..+..|.+||+.+++..      
T Consensus       175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  254 (706)
T 2z3z_A          175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE  254 (706)
T ss_dssp             CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred             hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence                   0245677788889888751                               12578999999877632      


Q ss_pred             -ccCceEEEEeCCCCCEEEEEeCCC----cEEEEEEcCCCceeEeeccCCcc---eeEEEEEeec--CCCcccEEEEEeC
Q 019672          173 -CEAPLAAIVLSSNGMYIATASEQG----TIIRVFLVSEATKSYSFRRGTYP---STIFSLSFGQ--SMQFQDILVATSS  242 (337)
Q Consensus       173 -~~~~i~~~~~s~dg~~lat~s~dg----~~i~vwd~~~~~~~~~~~~~~~~---~~i~~l~fs~--dg~~~~~las~s~  242 (337)
                       +...+.+++|+|||++|++++.++    ..|++||+.+++....+......   ..+.+++|+|  ||+   +|++++.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~---~l~~~~~  331 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ---FIWQSRR  331 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE---EEEEECT
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE---EEEEEcc
Confidence             125689999999999999988775    13689999998444333211111   1246789999  999   9999999


Q ss_pred             CCcEEEEecC
Q 019672          243 SGSLHVFSPG  252 (337)
Q Consensus       243 dg~v~iw~l~  252 (337)
                      |++++||.++
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            9999999886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.81  E-value=3.5e-17  Score=146.92  Aligned_cols=223  Identities=12%  Similarity=0.063  Sum_probs=162.7

Q ss_pred             CeEEEEEcCCCCEEEEE-cCC-ceEEEeCCCCcEEEEEeeCC-----------EEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            9 PVFFVSFNQDNSGFALS-TKD-GFKIFDSSTGRLCYERAVGA-----------FSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g-~~~-g~~vw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      .+..++|+|||++++++ ..+ .+.+||..+++.+.....+.           ...+.+.++.+.+++...+     .++
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~  164 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-----KES  164 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-----SSC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-----CCc
Confidence            45678999999976554 433 47999999998876654422           3456677777777666532     478


Q ss_pred             eEEEEECCCCCEEEEEE-cCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCC--CceEEEEeeCCCccE
Q 019672           76 RLCLFNTTTGTALRELN-FLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPN--LKGLCAFSPSLNACF  149 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~-~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  149 (337)
                      .|.+||.++++.+..+. ....+..+.++++  .++++. ++.|.+||+.+++.+..+.....  ......+.++|++.+
T Consensus       165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  244 (353)
T 3vgz_A          165 VIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR  244 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred             eEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence            99999999999888887 4445778888765  455554 78999999999988877754221  223445666677777


Q ss_pred             EEEcCCCCccEEEEEEccCCccccc---CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHCE---APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      +++++. .++.|.+||+.+++....   .....++|+|+|++++.++ .++. |.+||+.+++.+..+..+   ..+.++
T Consensus       245 l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~  319 (353)
T 3vgz_A          245 AFITDS-KAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGK-VSVIDAKSYKVVKTFDTP---THPNSL  319 (353)
T ss_dssp             EEEEES-SSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTE-EEEEETTTTEEEEEEECC---SEEEEE
T ss_pred             EEEEeC-CCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCe-EEEEECCCCeEEEEEecC---CCCCeE
Confidence            666654 469999999988775433   3346799999999766666 5676 689999999988877543   357899


Q ss_pred             EeecCCCcccEEEEEeCCC
Q 019672          226 SFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg  244 (337)
                      +|+|||+   +|+++..++
T Consensus       320 ~~s~dg~---~l~v~~~~~  335 (353)
T 3vgz_A          320 ALSADGK---TLYVSVKQK  335 (353)
T ss_dssp             EECTTSC---EEEEEEECC
T ss_pred             EEcCCCC---EEEEEEccc
Confidence            9999999   777776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.81  E-value=7.5e-18  Score=165.93  Aligned_cols=232  Identities=16%  Similarity=0.089  Sum_probs=159.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC--
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--   84 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~--   84 (337)
                      .+|.+++|+|| +.++.+.+..+++||+.+++...... ...+..+.+.++++.++++.        +++|.+||+.+  
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR--------NHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBCTT
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE--------CCeEEEEecCccc
Confidence            57999999999 77777777778999999887644332 23344567788888888753        68999999998  


Q ss_pred             ---CCEEEEEEcCCc---------------eeEEEEcCCe--EEEEE---------------------------------
Q 019672           85 ---GTALRELNFLTS---------------ILAVRLNKKR--LVIVL---------------------------------  111 (337)
Q Consensus        85 ---~~~~~~~~~~~~---------------v~~i~~~~~~--~~v~~---------------------------------  111 (337)
                         ++..........               +.++.|+|++  ++++.                                 
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               776543322222               4788898875  44443                                 


Q ss_pred             -CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCC-ccc--c--c-----Cce
Q 019672          112 -REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMEL-HSH--C--E-----APL  177 (337)
Q Consensus       112 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~-~~~--~--~-----~~i  177 (337)
                       +..|++||+.+++.........+...+..++++|++..+++.+.+   ....|.+||+.++ ...  .  .     ..+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence             147999999988765443222333456778888999888875421   1248999999887 321  1  1     234


Q ss_pred             EEEEeCC--CCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEE-EEeecCCCcccEEEEEeCC-C----cEEE
Q 019672          178 AAIVLSS--NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFS-LSFGQSMQFQDILVATSSS-G----SLHV  248 (337)
Q Consensus       178 ~~~~~s~--dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~-l~fs~dg~~~~~las~s~d-g----~v~i  248 (337)
                      .+++|+|  ||++|++++.||. ++||++. +++.+..+..+  ...+.+ ++|+|||+   .|+.++.+ +    .|..
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~---~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGT---RLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSS---EEEEEESSSCTTCBEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCC---EEEEEecCCCCceEEEEE
Confidence            7789999  9999999999997 5899886 66666666433  344665 79999998   66655544 4    4555


Q ss_pred             EecCCC
Q 019672          249 FSPGFA  254 (337)
Q Consensus       249 w~l~~~  254 (337)
                      ||+.+.
T Consensus       387 ~d~~~~  392 (706)
T 2z3z_A          387 IDIKGG  392 (706)
T ss_dssp             EETTCC
T ss_pred             EEcCCC
Confidence            555443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.9e-17  Score=146.91  Aligned_cols=232  Identities=10%  Similarity=0.114  Sum_probs=150.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC---CceEEEeCCCCcE--EEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTK---DGFKIFDSSTGRL--CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~---~g~~vw~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .....++|+|||++++++..   +.+.+|++++++.  +...  .......+.+.++.+.+++++.      .+++|.+|
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~------~~~~v~v~  113 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY------HKGTAEVM  113 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET------TTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC------CCCEEEEE
Confidence            44567999999994444432   3579999987753  2221  2234455677788887777664      47899999


Q ss_pred             ECC-CCC--EEEEEEcC----------CceeEEEEcCCe-EEEEE--CCeEEEEECC-CCeee--eeecCCCCCceEEEE
Q 019672           81 NTT-TGT--ALRELNFL----------TSILAVRLNKKR-LVIVL--REKTYIYDAN-TLAIL--DTIDTVPNLKGLCAF  141 (337)
Q Consensus        81 d~~-~~~--~~~~~~~~----------~~v~~i~~~~~~-~~v~~--d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~  141 (337)
                      |+. .++  .+..+...          ..+.++.+++++ ++++.  ++.|.+|++. +++..  ..+.... ......+
T Consensus       114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~  192 (347)
T 3hfq_A          114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHL  192 (347)
T ss_dssp             EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEE
T ss_pred             EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceE
Confidence            985 333  23333332          137789998765 34443  6799999998 45332  2222211 1234456


Q ss_pred             eeCCCccEEEEcCCCCccEEEEEEccC--Cccc--c---c--------CceEEEEeCCCCCEEE-EEeCCCcEEEEEEcC
Q 019672          142 SPSLNACFLAVPASTTKGSVLVYNVME--LHSH--C---E--------APLAAIVLSSNGMYIA-TASEQGTIIRVFLVS  205 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~dg~v~i~d~~~--~~~~--~---~--------~~i~~~~~s~dg~~la-t~s~dg~~i~vwd~~  205 (337)
                      .++|++.++++++. .++.|.+|++..  ++..  .   .        ..+..++|+|||++|+ +...+++ |++||+.
T Consensus       193 ~~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~~  270 (347)
T 3hfq_A          193 VFSPDGQYAFLAGE-LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAVT  270 (347)
T ss_dssp             EECTTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEEC
T ss_pred             EECCCCCEEEEEeC-CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEEC
Confidence            77788887666544 478999999874  3321  1   1        3488899999999874 5555776 6899997


Q ss_pred             C-C--ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-CcEEEEecCC
Q 019672          206 E-A--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGF  253 (337)
Q Consensus       206 ~-~--~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~  253 (337)
                      . +  +.+..+..+  ...+..++|+|||+   +|++++.+ +.|.+|+++.
T Consensus       271 ~~g~~~~~~~~~~~--~~~~~~~~~spdg~---~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          271 ADGHLTLIQQISTE--GDFPRDFDLDPTEA---FVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGGCEEEEEEEECS--SSCCCEEEECTTSS---EEEEEETTTTEEEEEEECT
T ss_pred             CCCcEEEeEEEecC--CCCcCeEEECCCCC---EEEEEEcCCCcEEEEEEeC
Confidence            3 2  334444321  23467899999999   88887765 8999997653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=5.6e-18  Score=147.54  Aligned_cols=228  Identities=11%  Similarity=-0.057  Sum_probs=153.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCC-CcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +...|.+++|+|||++|+++.++.+.+||+++ ++.......   ..+..+.+.+++..+++++....   ....|.+||
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---GKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---SSCEEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---CcceEEEEE
Confidence            46789999999999999999888889999998 765543322   23344677778888887763100   134555556


Q ss_pred             CCCCCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEEC--CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ..+++ ...+.....+..+.|+++.  ++++.  ++.++||++  .+++. ..+..+  ...+..+.++|++.++++.+.
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          117 STGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHG--EGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             TTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCS--SSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccC--CCccccceECCCCCEEEEEec
Confidence            66655 4445555568888998764  44233  788888885  44433 333322  234567777888888876653


Q ss_pred             CCccEEEEEEcc-CCccc-----ccCceEEEEeCCCCCEEEEEeCCC----------cEEEEEEcCCCceeEeeccCCcc
Q 019672          156 TTKGSVLVYNVM-ELHSH-----CEAPLAAIVLSSNGMYIATASEQG----------TIIRVFLVSEATKSYSFRRGTYP  219 (337)
Q Consensus       156 ~~dg~v~i~d~~-~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg----------~~i~vwd~~~~~~~~~~~~~~~~  219 (337)
                       .++.+.+|++. .....     +...+.+++|+|+|++|++++.++          ..|++||+.+++.........+.
T Consensus       193 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  271 (297)
T 2ojh_A          193 -RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ  271 (297)
T ss_dssp             -TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred             -CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence             47888999875 22222     226788999999999999988763          23689999988653322211123


Q ss_pred             eeEEEEEeecCCCcccEEEEEeCCC
Q 019672          220 STIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       220 ~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      ..+.+++|+|||+   +|++++.+.
T Consensus       272 ~~~~~~~~spdg~---~l~~~~~~~  293 (297)
T 2ojh_A          272 GTMNSPNWSPDGD---EFAYVRYFP  293 (297)
T ss_dssp             TTSCSCCBCTTSS---EEEEEEECC
T ss_pred             cccccceECCCCC---EEEEEEecc
Confidence            4578899999999   888887663

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.79  E-value=4.2e-16  Score=140.10  Aligned_cols=266  Identities=14%  Similarity=0.074  Sum_probs=158.4

Q ss_pred             CceEEEe--CCCCcEEE---EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--EEE-EEcCCceeE
Q 019672           28 DGFKIFD--SSTGRLCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LRE-LNFLTSILA   99 (337)
Q Consensus        28 ~g~~vw~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~~~-~~~~~~v~~   99 (337)
                      +++.+|.  .+++++..   .........+.+.+++. ++.++..    ..++.|.+||+.+++.  +.. ......+..
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~----~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE----DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE----TTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec----CCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            4566665  45565432   11223344456666666 4444320    0368999999977653  333 224557788


Q ss_pred             EEEcCCe--EEEEE--CCeEEEEECC-CC--eeeeeecCCCC-------CceEEEEeeCCCccEEEEcCCCCccEEEEEE
Q 019672          100 VRLNKKR--LVIVL--REKTYIYDAN-TL--AILDTIDTVPN-------LKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (337)
Q Consensus       100 i~~~~~~--~~v~~--d~~i~i~d~~-~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d  165 (337)
                      +++++++  ++++.  ++.+.+|++. ++  +.+..+.....       ...+.++.++|++.++++..  .++.|.+||
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~--~~~~v~~~~  168 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL--GSDKVYVYN  168 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET--TTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC--CCCEEEEEE
Confidence            8888764  55555  6799999995 22  33333322111       11245566777777544443  478999999


Q ss_pred             cc-CCcccc-------c-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC--Cce--eEeeccCCc----ceeEEEEEee
Q 019672          166 VM-ELHSHC-------E-APLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATK--SYSFRRGTY----PSTIFSLSFG  228 (337)
Q Consensus       166 ~~-~~~~~~-------~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~--~~~--~~~~~~~~~----~~~i~~l~fs  228 (337)
                      +. +++...       . ..+..++|+|||++|++++..+..|++|++..  ++.  +..+.....    ...+..++|+
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence            98 443211       1 36788999999997776654333478999874  543  222221111    1348889999


Q ss_pred             cCCCcccEE-EEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeC-
Q 019672          229 QSMQFQDIL-VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN-  306 (337)
Q Consensus       229 ~dg~~~~~l-as~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~d-  306 (337)
                      |||+   +| ++...+++|++|++........       +. .++..       ..   ....+.+.+++++|++++.+ 
T Consensus       249 pdG~---~l~v~~~~~~~v~v~~~~~~g~~~~-------~~-~~~~~-------~~---~~~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          249 HDGH---FLYVSNRGYNTLAVFAVTADGHLTL-------IQ-QISTE-------GD---FPRDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             TTSC---EEEEEEETTTEEEEEEECGGGCEEE-------EE-EEECS-------SS---CCCEEEECTTSSEEEEEETTT
T ss_pred             CCCC---EEEEEeCCCCEEEEEEECCCCcEEE-------eE-EEecC-------CC---CcCeEEECCCCCEEEEEEcCC
Confidence            9999   77 5666789999999974321110       00 00000       00   00122346667888888765 


Q ss_pred             CcEEEEEEecCCCCe
Q 019672          307 GYFVEYIFSINNCCE  321 (337)
Q Consensus       307 g~~~~~~~~~~~~~~  321 (337)
                      +.+.+|.++.+.++.
T Consensus       308 ~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          308 DNATLYARDLTSGKL  322 (347)
T ss_dssp             TEEEEEEECTTTCCE
T ss_pred             CcEEEEEEeCCCCeE
Confidence            999999999888774

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=5.7e-18  Score=157.72  Aligned_cols=158  Identities=13%  Similarity=0.124  Sum_probs=111.2

Q ss_pred             EEcCCceeEEEEcCCeEEEE----E---CCeEEEEECCCC--------eeeeeecC-CCCCceEEEEeeCCC-ccEEEEc
Q 019672           91 LNFLTSILAVRLNKKRLVIV----L---REKTYIYDANTL--------AILDTIDT-VPNLKGLCAFSPSLN-ACFLAVP  153 (337)
Q Consensus        91 ~~~~~~v~~i~~~~~~~~v~----~---d~~i~i~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~-~~~la~~  153 (337)
                      +.+...|.+++|++++..++    +   |+.|+|||+.++        +.+..+.. ..+...+.+++++|+ +.+++++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            44556788888887653333    3   678888987544        22222221 123345778888886 6788888


Q ss_pred             CCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-----cceeEE
Q 019672          154 ASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----YPSTIF  223 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-----~~~~i~  223 (337)
                      +  .||+|++||++++...     |...|.+++|+|+|++||+|+.||+ |++||++ ++....+....     +...|.
T Consensus       169 s--~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          169 L--ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             E--TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             E--CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccCCcccCCCCceeEE
Confidence            7  5999999999887543     3478999999999999999999998 6999998 55555443221     234799


Q ss_pred             EEEeecCCCcccEEEE-EeCCC------cEEEEecCCCc
Q 019672          224 SLSFGQSMQFQDILVA-TSSSG------SLHVFSPGFAI  255 (337)
Q Consensus       224 ~l~fs~dg~~~~~las-~s~dg------~v~iw~l~~~~  255 (337)
                      +++|++++.   ++++ ++.+|      .+++|++.+..
T Consensus       245 ~v~w~~~~~---~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          245 DVLWIGTYV---FAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEETTE---EEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             EEEEecCce---EEEEEccCCCccCCCCceEEEEeccCC
Confidence            999999987   6654 33443      38999998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=7.1e-17  Score=146.04  Aligned_cols=229  Identities=13%  Similarity=0.124  Sum_probs=148.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-----ceEEEeCCC--CcEE--EEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            8 YPVFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLC--YERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~-----g~~vw~~~~--~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .....++|+|||++|++++.+     .+.+|+++.  +++.  .....  .....+.+  +.+.++.+..      .+++
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~------~~~~  121 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY------SGGS  121 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET------TTTE
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC------CCCE
Confidence            445678999999998887763     578898765  5432  22221  22333343  6666665554      4889


Q ss_pred             EEEEECCCCCEEE----EEEcC-----------CceeEEEEcCCe--EEEEE--CCeEEEEECCCCe-------ee----
Q 019672           77 LCLFNTTTGTALR----ELNFL-----------TSILAVRLNKKR--LVIVL--REKTYIYDANTLA-------IL----  126 (337)
Q Consensus        77 v~iwd~~~~~~~~----~~~~~-----------~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~-------~~----  126 (337)
                      |.+|++.....+.    ...+.           ..+.++.+++++  ++++.  ++.|.+|++....       ..    
T Consensus       122 v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          122 ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence            9999987543221    12221           124678898865  45554  6799999886433       11    


Q ss_pred             -eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--c--------cCceEEEEeCCCCCEEEEEeCC
Q 019672          127 -DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--C--------EAPLAAIVLSSNGMYIATASEQ  195 (337)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--~--------~~~i~~~~~s~dg~~lat~s~d  195 (337)
                       ..+... .......+.++|++.++++++. .++.|.+||+.++...  .        ......++|+|||++|+++..+
T Consensus       202 ~~~~~~~-~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          202 PEAFKVA-PGSGPRHLIFNSDGKFAYLINE-IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EEEEECC-TTCCEEEEEECTTSSEEEEEET-TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             ccceecC-CCCCCeEEEEcCCCCEEEEEcC-CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence             122221 1233456677888887776654 4899999999865431  1        1346799999999998777665


Q ss_pred             --CcEEEEEEcC--CCc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCC
Q 019672          196 --GTIIRVFLVS--EAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  253 (337)
Q Consensus       196 --g~~i~vwd~~--~~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~  253 (337)
                        ++ |++|++.  +++  .+..+..   ...+.+++|+|||+   +|++++ .++.|.+|+++.
T Consensus       280 ~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~---~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          280 KADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGK---YLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSC---EEEEEETTTTEEEEEEECT
T ss_pred             CCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCC---EEEEEECCCCCEEEEEEEC
Confidence              55 7999995  455  3333332   23467899999999   888887 678999987753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.5e-18  Score=165.78  Aligned_cols=225  Identities=12%  Similarity=0.078  Sum_probs=150.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Cc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE--EC-
Q 019672            8 YPVFFVSFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF--NT-   82 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~-~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw--d~-   82 (337)
                      .+|++++|+|||++||.++. ++ ++||++++++...-...+...+....++++.+++.+....   .+...+||  +. 
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~---g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSK---GAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECST---TSCCEEEEEEETT
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCC---CCcceEEEEEecc
Confidence            47999999999999998765 55 6999987665433222221244456666665554433100   14445554  54 


Q ss_pred             -CCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 -TTGTALRELNFLT--SILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 -~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                       ..+. . .+....  .+.+++++++.++++.  ++.+.+||+.+++.......+.     ..++++||+.++++.+.  
T Consensus        99 ~~g~~-~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~~--  169 (582)
T 3o4h_A           99 RPGEE-Q-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLGF--  169 (582)
T ss_dssp             STTCC-E-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEEE--
T ss_pred             CCCcc-c-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEEE--
Confidence             3332 2 332222  2445556666665554  5566799998886554433221     44556677889987663  


Q ss_pred             c----cEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEE-
Q 019672          158 K----GSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLS-  226 (337)
Q Consensus       158 d----g~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~-  226 (337)
                      +    +.|.+||+.+++..    +...+..++|||||++|+++..+|  + |++||+.+++.. .+. + +...+.+++ 
T Consensus       170 ~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~-~-~~~~~~~~~~  245 (582)
T 3o4h_A          170 FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLE-L-PSKDFSSYRP  245 (582)
T ss_dssp             EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECC-C-SCSHHHHHCC
T ss_pred             cCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-Ecc-C-CCcChhhhhh
Confidence            4    78999998877643    236789999999999999888888  5 689999998876 443 2 222344445 


Q ss_pred             -------eecCCCcccEEEEEeCCCcEEEEec
Q 019672          227 -------FGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       227 -------fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                             |||||+   ++++++.+++++||++
T Consensus       246 ~~~~~~~~spdg~---~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          246 TAITWLGYLPDGR---LAVVARREGRSAVFID  274 (582)
T ss_dssp             SEEEEEEECTTSC---EEEEEEETTEEEEEET
T ss_pred             ccccceeEcCCCc---EEEEEEcCCcEEEEEE
Confidence                   999998   9999999999999999

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.78  E-value=1.6e-17  Score=164.36  Aligned_cols=229  Identities=7%  Similarity=0.054  Sum_probs=160.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCC---cEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTG---RLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .|.+++|+|||++|++++...+.+||+.++   +... ......+..+.+.++++.+++++        ++.|.+||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--------~~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--------GRNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--------TTEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--------CCcEEEEecCC
Confidence            378999999999999988877899999887   4322 12224567778888888888876        35899999998


Q ss_pred             CCEEEEEEcCCc-----------------eeEEEEcCCe--EEEEE-CC-------------------------------
Q 019672           85 GTALRELNFLTS-----------------ILAVRLNKKR--LVIVL-RE-------------------------------  113 (337)
Q Consensus        85 ~~~~~~~~~~~~-----------------v~~i~~~~~~--~~v~~-d~-------------------------------  113 (337)
                      ++..........                 +..+.|++++  ++++. ++                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            876543322221                 4678898765  44443 43                               


Q ss_pred             --eEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCccEEEEcCC---CCccEEEEEEccCCccccc------C---ceE
Q 019672          114 --KTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS---TTKGSVLVYNVMELHSHCE------A---PLA  178 (337)
Q Consensus       114 --~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~dg~v~i~d~~~~~~~~~------~---~i~  178 (337)
                        .|++||+.+ ++.........+...+..+++ |++.+|++...   ..+..|.+||+.+++....      .   .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              788999988 765433222123445667777 88888886531   1367899999988764321      1   457


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEEcC-CCceeEeeccCCcceeEEEE-EeecCCCcccEEE-EEeCCC--cEEEEecCC
Q 019672          179 AIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSL-SFGQSMQFQDILV-ATSSSG--SLHVFSPGF  253 (337)
Q Consensus       179 ~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l-~fs~dg~~~~~la-s~s~dg--~v~iw~l~~  253 (337)
                      .++|+|||+++++++.||. ++||.+. +++ +..+..+  ...|.++ +|||||+   .|+ +++.++  +++||+++.
T Consensus       341 ~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~---~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAG---LAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTT---EEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCC---EEEEEEeCCCCceEEEEEEEc
Confidence            8999999999999999987 4788765 444 5555433  3457776 5999998   665 455555  899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.77  E-value=1.1e-16  Score=139.18  Aligned_cols=208  Identities=10%  Similarity=-0.024  Sum_probs=144.2

Q ss_pred             ceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC-CCEEEEEEcC--CceeEEEEcC
Q 019672           29 GFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNFL--TSILAVRLNK  104 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~-~~~~~~~~~~--~~v~~i~~~~  104 (337)
                      .+++||+.+++..... +...+..+.+.++++.+++.+        ++.|.+||+.+ ++.......+  ..+.++.|++
T Consensus        23 ~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           23 SIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             eEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            3699999988765332 335577778888888777653        57999999998 8766555443  4678889987


Q ss_pred             Ce--EEEEE---C--CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc--CCccc---
Q 019672          105 KR--LVIVL---R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHSH---  172 (337)
Q Consensus       105 ~~--~~v~~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~--~~~~~---  172 (337)
                      +.  ++++.   +  ..|.++++.+++ ...+....   ....+.++|++..+++.+. .++.++||++.  ++...   
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGI-RDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEE-ETTEEEEEEEETTTCCEEECC
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEEC-CCCceEEEEEECCCCcceEcc
Confidence            64  44444   1  355556665554 33333222   2556677888888875443 47889999853  33321   


Q ss_pred             -ccCceEEEEeCCCCCEEEEEe-CCCcEEEEEEcC-CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC------
Q 019672          173 -CEAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS------  243 (337)
Q Consensus       173 -~~~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d------  243 (337)
                       +...+.+++|+|+|++|+.++ .++. ++||++. .+..+..+..  +...+.+++|+|||+   +|++++.+      
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~  243 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGD---KVVFVSYDADVFDH  243 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSS---EEEEEEEETTCCSC
T ss_pred             cCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCC---EEEEEEcCCCCCcc
Confidence             226799999999999888776 4777 5899986 4555555543  345789999999999   89888876      


Q ss_pred             -----CcEEEEecCCCc
Q 019672          244 -----GSLHVFSPGFAI  255 (337)
Q Consensus       244 -----g~v~iw~l~~~~  255 (337)
                           +.|++||++..+
T Consensus       244 ~~~~~~~l~~~d~~~~~  260 (297)
T 2ojh_A          244 PRDLDVRVQLMDMDGGN  260 (297)
T ss_dssp             CSSEEEEEEEEETTSCS
T ss_pred             cccCceEEEEEecCCCC
Confidence                 569999987654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=8.9e-17  Score=146.04  Aligned_cols=243  Identities=12%  Similarity=0.073  Sum_probs=153.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCceEEEeCC-CCcEEEEEe--e-CCEEEEEEccCCCEE-EEEeC-CCCCCC------CCc
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSS-TGRLCYERA--V-GAFSIVEMLYSSSLL-AIVGA-GEQPSL------SPR   75 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~~vw~~~-~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~~-g~~~~~------~d~   75 (337)
                      ..+..++|+|||++|+++..+.+.+|+++ ++++.....  . +....+.+.++++.+ ++++. +....+      .++
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            36778999999998887776788999987 776543221  1 111223334444432 22321 000000      378


Q ss_pred             eEEEEECC-CCCEEEEEE-----cCCceeEEEEcCCe--EEEEE--CCeEEEEECC-CCeee--eeecCCCCCceEEEEe
Q 019672           76 RLCLFNTT-TGTALRELN-----FLTSILAVRLNKKR--LVIVL--REKTYIYDAN-TLAIL--DTIDTVPNLKGLCAFS  142 (337)
Q Consensus        76 ~v~iwd~~-~~~~~~~~~-----~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~~  142 (337)
                      ++.+|++. .++....+.     ....+.++.+++++  ++++.  ++.|++||+. +++..  ..+..+.+..+...+.
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            99999997 466554443     23478899999875  44444  5699999998 66542  3333221123455667


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEcc--CCccc------cc--------C-------ceEEEE-eCCCCCEEEEEeCCCc-
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVM--ELHSH------CE--------A-------PLAAIV-LSSNGMYIATASEQGT-  197 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~--~~~~~------~~--------~-------~i~~~~-~s~dg~~lat~s~dg~-  197 (337)
                      ++|++.++++++. .++.|.+|++.  +++..      ..        .       .+..++ |+|||++|++++.+.. 
T Consensus       200 ~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          200 MHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             ECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             ECCCCCEEEEEEC-CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            7888888877653 47899999764  34321      11        1       488999 9999999887765332 


Q ss_pred             ----EEEEEEcC-CCceeEeec-cCCcceeEEEEEeec---CCCcccEEEEEeCC-CcEEEEecCCC
Q 019672          198 ----IIRVFLVS-EATKSYSFR-RGTYPSTIFSLSFGQ---SMQFQDILVATSSS-GSLHVFSPGFA  254 (337)
Q Consensus       198 ----~i~vwd~~-~~~~~~~~~-~~~~~~~i~~l~fs~---dg~~~~~las~s~d-g~v~iw~l~~~  254 (337)
                          .|++|++. +|+...... .......+..++|+|   ||+   +|++++.+ ++|+||+++..
T Consensus       279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~---~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE---WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT---EEEEECSSSCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC---EEEEEEcCCCeEEEEEEchh
Confidence                37999996 666433111 111122345789999   899   89988865 89999998654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=8.3e-17  Score=144.06  Aligned_cols=213  Identities=8%  Similarity=-0.003  Sum_probs=146.6

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCC----CceEEEEe
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPN----LKGLCAFS  142 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~  142 (337)
                      .+++|.+||..+++.+..+..+.  .+..+.+++++  ++++.  ++.|.+||+.+++.+..+.....    ......+.
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   98 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA   98 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceE
Confidence            48999999999999988888766  67889998764  55554  67999999999988777754322    11133456


Q ss_pred             eCCCccEEEEcCCC----------CccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC
Q 019672          143 PSLNACFLAVPAST----------TKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       143 ~~~~~~~la~~~~~----------~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~  205 (337)
                      ++|++.++++++..          .++.|.+||+.+++...       ...+.+++|+|||+ ++.++.  . |++||+.
T Consensus        99 ~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~-i~~~d~~  174 (349)
T 1jmx_B           99 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--D-IYKMDVK  174 (349)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--S-EEEECTT
T ss_pred             ECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--c-EEEEeCC
Confidence            67788888877620          03899999998754321       14588999999999 555543  3 6899999


Q ss_pred             CCceeEeeccCC-------------------------c-----------------------------------------c
Q 019672          206 EATKSYSFRRGT-------------------------Y-----------------------------------------P  219 (337)
Q Consensus       206 ~~~~~~~~~~~~-------------------------~-----------------------------------------~  219 (337)
                      +++.+..+..+.                         .                                         .
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (349)
T 1jmx_B          175 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  254 (349)
T ss_dssp             TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence            998776664321                         0                                         0


Q ss_pred             eeEEEEEeec-CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccC
Q 019672          220 STIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA  298 (337)
Q Consensus       220 ~~i~~l~fs~-dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  298 (337)
                      ..+.+++|+| ||+   +|+++  ++.|++||+++.+....       +.  .+..   .+          .+.+.++++
T Consensus       255 ~~~~~~~~sp~dg~---~l~~~--~~~v~~~d~~~~~~~~~-------~~--~~~~---~~----------~~~~s~dg~  307 (349)
T 1jmx_B          255 ELYFTGLRSPKDPN---QIYGV--LNRLAKYDLKQRKLIKA-------AN--LDHT---YY----------CVAFDKKGD  307 (349)
T ss_dssp             SCEEEEEECSSCTT---EEEEE--ESEEEEEETTTTEEEEE-------EE--CSSC---CC----------EEEECSSSS
T ss_pred             CcceeeEecCCCCC---EEEEE--cCeEEEEECccCeEEEE-------Ec--CCCC---cc----------ceEECCCCC
Confidence            0245678889 998   88887  88999999976543211       00  0000   01          122345567


Q ss_pred             EEEEEEeCCcEEEEEEec
Q 019672          299 SVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       299 ~l~~~~~dg~~~~~~~~~  316 (337)
                      +|++++.+|.+++|++++
T Consensus       308 ~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          308 KLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             CEEEESBSSEEEEEETTT
T ss_pred             EEEEecCCCeEEEEeccc
Confidence            899888899999997643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=2.9e-15  Score=135.46  Aligned_cols=279  Identities=11%  Similarity=0.055  Sum_probs=169.4

Q ss_pred             cCCCCEEEEEcC-----CceEEEeC--CCCcEEE--EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC--
Q 019672           16 NQDNSGFALSTK-----DGFKIFDS--STGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--   84 (337)
Q Consensus        16 s~dg~~la~g~~-----~g~~vw~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~--   84 (337)
                      .++..++.+|+.     .++.+|.+  +++++..  .........+.+.++...++.++...   ..++.|.+|++..  
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~---~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFS---KDQAAVSAFAFDKEK   86 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCS---STTCEEEEEEEETTT
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccC---CCCCcEEEEEEeCCC
Confidence            445556777742     35777754  5565432  22333444567777777776665410   0247999998765  


Q ss_pred             CCE--EEEEE-cCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeec----CCC-C-------CceEEEEeeCCCc
Q 019672           85 GTA--LRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTID----TVP-N-------LKGLCAFSPSLNA  147 (337)
Q Consensus        85 ~~~--~~~~~-~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~----~~~-~-------~~~~~~~~~~~~~  147 (337)
                      ++.  +.... .......++++.+.++++.  ++.+.+|++.....+..+.    ... .       .....++.++|++
T Consensus        87 g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           87 GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             TEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             CcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence            433  23333 2345677777666677776  7799999997543332211    000 0       1123456777888


Q ss_pred             cEEEEcCCCCccEEEEEEccCCcc--------------c----ccCceEEEEeCCCCCEEEEEeC-CCcEEEEEEcCCCc
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHS--------------H----CEAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEAT  208 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~--------------~----~~~~i~~~~~s~dg~~lat~s~-dg~~i~vwd~~~~~  208 (337)
                      .++++++. .++.|.+|++.....              .    ....+..++|+|||++|++++. ++. |++||+.+++
T Consensus       167 ~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g~  244 (361)
T 3scy_A          167 KYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADGM  244 (361)
T ss_dssp             SEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETTE
T ss_pred             CEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCCc
Confidence            87766654 478999998864331              0    1155789999999998888874 665 7999998775


Q ss_pred             e--eEeeccC-CcceeEEEEEeecCCCcccEEEEEeC--CCcEEEEecCCCcccCCCCcccccccccccccceeeccccc
Q 019672          209 K--SYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  283 (337)
Q Consensus       209 ~--~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~--dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  283 (337)
                      .  +..+... .+......++|||||+   +|+++..  +++|.||+++......      ..+. .++.        ..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~---~l~v~~~~~~~~i~v~~~~~~~g~~------~~~~-~~~~--------g~  306 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGK---YLYASNRLKADGVAIFKVDETNGTL------TKVG-YQLT--------GI  306 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSS---EEEEEECSSSCEEEEEEECTTTCCE------EEEE-EEEC--------SS
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCC---EEEEECCCCCCEEEEEEEcCCCCcE------EEee-EecC--------CC
Confidence            4  2222211 1122367899999999   8866655  4899999996321110      0000 0000        00


Q ss_pred             ceeeeeccCCCcccCEEEEEE-eCCcEEEEEEecCCCC
Q 019672          284 HHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINNCC  320 (337)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~-~dg~~~~~~~~~~~~~  320 (337)
                         ....+.+.+++++|++++ .++.+.+|.++.+.++
T Consensus       307 ---~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          307 ---HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             ---CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred             ---CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence               001223456668898888 6799999999988776

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.75  E-value=3e-16  Score=161.34  Aligned_cols=229  Identities=13%  Similarity=0.142  Sum_probs=163.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCC--CCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSS--TGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+...+.++.|+++ ..++++..++ .+||.++  ++....-.....+....+.+++..+++..        ++.|.+||
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~--------~~~i~~~d  271 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK--------GGSIYIFN  271 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE--------TTEEEEEC
T ss_pred             CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe--------CCEEEEec
Confidence            45678999999998 5566666655 5888654  33322111122334456777777777653        67999999


Q ss_pred             CCCCCEEEEEEcC------------CceeEEEEc-CCe--EEEEECCeEEEEECCCCeeeeeecCCCCCc-eEEEEeeCC
Q 019672           82 TTTGTALRELNFL------------TSILAVRLN-KKR--LVIVLREKTYIYDANTLAILDTIDTVPNLK-GLCAFSPSL  145 (337)
Q Consensus        82 ~~~~~~~~~~~~~------------~~v~~i~~~-~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~  145 (337)
                      +...+ +..+..+            ..+.++.|+ |++  ++++.++.+++|++..++... +..  +.. .+..++++ 
T Consensus       272 ~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-  346 (1045)
T 1k32_A          272 PDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-  346 (1045)
T ss_dssp             TTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-
T ss_pred             CCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-
Confidence            95544 3344321            258889999 875  555568999999998776543 322  222 56677888 


Q ss_pred             CccEEEEcCCCCccEEE-EEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          146 NACFLAVPASTTKGSVL-VYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~-i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ++..+++.+.  ++.+. +||+.++...    +...+..++|||||++||+++.++. |++||+.+++....+..  +..
T Consensus       347 dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~~  421 (1045)
T 1k32_A          347 TKVAFIHGTR--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--REA  421 (1045)
T ss_dssp             SEEEEEEEET--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SSS
T ss_pred             CCCeEEEEEC--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CCC
Confidence            8888888773  67888 9998765432    2367999999999999999999987 68999999987665532  345


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCC----------cEEEEecCCCc
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSG----------SLHVFSPGFAI  255 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg----------~v~iw~l~~~~  255 (337)
                      .+.+++|||||+   +|++++.++          .|++||+.++.
T Consensus       422 ~v~~~~~SpDG~---~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          422 MITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             CCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CccceEECCCCC---eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            678899999999   898887754          89999997654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.74  E-value=5.9e-16  Score=159.11  Aligned_cols=223  Identities=15%  Similarity=0.136  Sum_probs=164.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeC-------------CEEEEEEc-cCCCEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG-------------AFSIVEML-YSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~g~~~~~~d   74 (337)
                      .+...+|+|||++|+.+.+..+.+|++.+.++. .....             .+..+.+. +++..+++++        +
T Consensus       246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--------~  316 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--------R  316 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--------T
T ss_pred             CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE--------c
Confidence            466789999999999888777899998655443 33221             34556677 7777777765        4


Q ss_pred             ceEEEEECCCCCEEEEEEcCC-ceeEEEEcCCeE--EEEE-CCeEE-EEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRL--VIVL-REKTY-IYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~--~v~~-d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +.|.+|+..+++......+.. .+..+.|+ ++-  +.+. ++.+. +||+.+++.. .+.  .+...+..++++|++.+
T Consensus       317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCE
Confidence            699999998877554333444 67888888 753  3334 45788 8898876543 333  23345667788889999


Q ss_pred             EEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCC---------cEEEEEEcCCCceeEeecc
Q 019672          150 LAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQG---------TIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg---------~~i~vwd~~~~~~~~~~~~  215 (337)
                      |++++  .++.|++||+.+++..     +...+.+++|||||++||+++.++         ..|++||+.+++ +..+..
T Consensus       393 la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~  469 (1045)
T 1k32_A          393 AVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT  469 (1045)
T ss_dssp             EEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC
T ss_pred             EEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC
Confidence            99887  4889999999887643     336789999999999999988754         247999999887 444532


Q ss_pred             CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          216 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       216 ~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                        +...+.+++|+|||+   +|+.++.++...+|+..
T Consensus       470 --~~~~~~~~~~spdG~---~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          470 --ENSHDYAPAFDADSK---NLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             --SSSBEEEEEECTTSC---EEEEEESCCCCCEECSS
T ss_pred             --CCcccCCceEcCCCC---EEEEEecccCCcCcchh
Confidence              234578899999999   99999999999999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=1.7e-16  Score=147.69  Aligned_cols=164  Identities=13%  Similarity=0.148  Sum_probs=114.6

Q ss_pred             ceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEECCeEEEEECCCCee----------eeeec---CCCCCceEE
Q 019672           75 RRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVLREKTYIYDANTLAI----------LDTID---TVPNLKGLC  139 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~d~~i~i~d~~~~~~----------~~~~~---~~~~~~~~~  139 (337)
                      +++++|+....     + ....+..+++++  ..++++..+.+++|+......          +....   .......+.
T Consensus        23 ~~vri~~~~~~-----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPEE-----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCSS-----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCccc-----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            46788764311     1 112345555543  445555555699987532100          00000   001223477


Q ss_pred             EEeeCCCccEEE----EcCCCCccEEEEEEccCC--------c-----cc---ccCceEEEEeCCC-CCEEEEEeCCCcE
Q 019672          140 AFSPSLNACFLA----VPASTTKGSVLVYNVMEL--------H-----SH---CEAPLAAIVLSSN-GMYIATASEQGTI  198 (337)
Q Consensus       140 ~~~~~~~~~~la----~~~~~~dg~v~i~d~~~~--------~-----~~---~~~~i~~~~~s~d-g~~lat~s~dg~~  198 (337)
                      ++++++++.+|+    +++  .|+.|+|||+.+.        +     ..   |..+|.+++|+|+ +++||+++.||+ 
T Consensus        97 ~l~~spdg~~lav~~~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-  173 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSE--YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-  173 (434)
T ss_dssp             EEEECTTSCEEEEEEEETT--TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-
T ss_pred             EEEEcCCCCEEEEEEeccC--CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-
Confidence            888899999999    555  5999999998764        1     11   3588999999998 899999999998 


Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |++||+++++.+.... + +...|.+++|+|+|+   +|++|+.||+|++||++
T Consensus       174 v~iwD~~~~~~~~~~~-~-~~~~v~~v~wspdg~---~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          174 IAVLQVTETVKVCATL-P-STVAVTSVCWSPKGK---QLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEEESSSEEEEEEE-C-GGGCEEEEEECTTSS---CEEEEETTSCEEEECTT
T ss_pred             EEEEEcCCCcceeecc-C-CCCceeEEEEcCCCC---EEEEEcCCCcEEEEccC
Confidence            6999999987655442 2 356799999999999   99999999999999987

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=5.2e-17  Score=160.35  Aligned_cols=237  Identities=8%  Similarity=0.018  Sum_probs=154.8

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeC-----CEEEEEEccCCCEEEEEeCCCC--CCCCCceEEEEECCC
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG-----AFSIVEMLYSSSLLAIVGAGEQ--PSLSPRRLCLFNTTT   84 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~--~~~~d~~v~iwd~~~   84 (337)
                      +++|+|||++++++.++.+++||+.+++.......+     .+..+.+.++++.+++.+....  ....+++|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            779999997776666556899999998765444322     2566788888888887764100  001268999999999


Q ss_pred             CCEEEEEEcCCceeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCceE-----------------EEEeeCC
Q 019672           85 GTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGL-----------------CAFSPSL  145 (337)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~  145 (337)
                      ++.+........+..++|+|++  ++.+.++.|++||+.+++....... .....+                 .+++++|
T Consensus       100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEECC
Confidence            8763112223568889998875  5555699999999988765433211 111111                 2567788


Q ss_pred             CccEEEEcCCCC--------------------------------ccEEEEEEccCCccc-------------ccCceEEE
Q 019672          146 NACFLAVPASTT--------------------------------KGSVLVYNVMELHSH-------------CEAPLAAI  180 (337)
Q Consensus       146 ~~~~la~~~~~~--------------------------------dg~v~i~d~~~~~~~-------------~~~~i~~~  180 (337)
                      |+..||+.+.+.                                ...|.+||+.+++..             +...+..+
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            898999876311                                127899999887642             33678999


Q ss_pred             EeCCCCCEEEEEeCCC---cEEEEEE----cCCCceeEeec---cCCcceeEE-----EEEeecCCCcccEEEE--EeCC
Q 019672          181 VLSSNGMYIATASEQG---TIIRVFL----VSEATKSYSFR---RGTYPSTIF-----SLSFGQSMQFQDILVA--TSSS  243 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg---~~i~vwd----~~~~~~~~~~~---~~~~~~~i~-----~l~fs~dg~~~~~las--~s~d  243 (337)
                      +|||||+++++....+   ..|.+||    +.+++....+.   .+ +...+.     +++|||||+   .|+.  +..+
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~  334 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAI---SYYKIFSDKD  334 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSS---CEEEEEECTT
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCC---eEEEEEEccC
Confidence            9999988777754332   1257899    87776544331   12 222343     689999998   5544  4456


Q ss_pred             Cc--EEEEecCC
Q 019672          244 GS--LHVFSPGF  253 (337)
Q Consensus       244 g~--v~iw~l~~  253 (337)
                      |.  |.+|++..
T Consensus       335 g~~~l~~~~~~~  346 (719)
T 1z68_A          335 GYKHIHYIKDTV  346 (719)
T ss_dssp             SCEEEEEESSCS
T ss_pred             CceEEEEEECCC
Confidence            65  55555544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=3.4e-14  Score=124.14  Aligned_cols=232  Identities=14%  Similarity=0.156  Sum_probs=155.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEee--------CCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--------GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      +-....+++++++|+++++...+ .+.+||.+ ++.+.....        .....+.+......+.++..+     .++.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQ  101 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCE
Confidence            33568899999999988877654 57999987 554443321        233344442233334333321     2689


Q ss_pred             EEEEECCCCCEEEEEEcC--CceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           77 LCLFNTTTGTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      |.+|| .+++.+..+...  ..+.++++++++ ++++.  ++.|.+||.. ++.+..+..........+++.++++.+++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            99999 567777766543  367889998765 45554  5789999964 55555554322223456677777777666


Q ss_pred             EcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCC-cEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          152 VPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQG-TIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg-~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +..  .++.|.+||........      ...+..++++|+|+++++...++ . |++||. +++.+..+..+.....+.+
T Consensus       180 ~~~--~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          180 SDN--RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQCFD  255 (286)
T ss_dssp             EEG--GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred             EEC--CCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCCccee
Confidence            544  37899999975432111      14688999999999888887775 6 689995 5777766654332334789


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ++|+|+|+   ++++ +.+++|+||++..
T Consensus       256 i~~~~~g~---l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          256 VALMDDGS---VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEETTTE---EEEE-ETTTEEEEEECSC
T ss_pred             EEECCCCc---EEEE-CCCCeEEEEEccc
Confidence            99999998   6666 6789999999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.73  E-value=6e-16  Score=152.62  Aligned_cols=234  Identities=10%  Similarity=-0.018  Sum_probs=154.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCC----------ceEEEeCCCCcEEEEEe--eC--CEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKD----------GFKIFDSSTGRLCYERA--VG--AFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~----------g~~vw~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      .|.+++|||||++|+.++.+          .+.+||+++++...-..  .+  .+..+.+.++++.+++++.        
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--------  133 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--------  133 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence            48999999999999988652          35799999887521111  11  1344567777888888763        


Q ss_pred             ceEEEEECCCCCEEEEEEcC-Cce------------------eEEEEcCCe--EEEEE-CC-------------------
Q 019672           75 RRLCLFNTTTGTALRELNFL-TSI------------------LAVRLNKKR--LVIVL-RE-------------------  113 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~-~~v------------------~~i~~~~~~--~~v~~-d~-------------------  113 (337)
                      ++|++||..+++.......+ ..+                  .++.|+|++  ++.+. ++                   
T Consensus       134 ~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~  213 (723)
T 1xfd_A          134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (723)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence            69999999988766544332 222                  679998875  44443 32                   


Q ss_pred             ---------------eEEEEECCCCeeeeeecCCC----CCceEEEEeeCCCccEEEEcCC--CCccEEEEEEccCCccc
Q 019672          114 ---------------KTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLNACFLAVPAS--TTKGSVLVYNVMELHSH  172 (337)
Q Consensus       114 ---------------~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~~--~~dg~v~i~d~~~~~~~  172 (337)
                                     .|++||+.+++....+..+.    +...+..++++||+.++++...  ..+..|.+||+.+++..
T Consensus       214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence                           79999998887545554321    1345667788888888865431  13578999999887643


Q ss_pred             cc------Cce----EEEEeCCCCCEEEEE--eCCC----c-EEEEEE-cCCCce--eEeeccCCcceeEE-EEEeecCC
Q 019672          173 CE------APL----AAIVLSSNGMYIATA--SEQG----T-IIRVFL-VSEATK--SYSFRRGTYPSTIF-SLSFGQSM  231 (337)
Q Consensus       173 ~~------~~i----~~~~~s~dg~~lat~--s~dg----~-~i~vwd-~~~~~~--~~~~~~~~~~~~i~-~l~fs~dg  231 (337)
                      ..      ..+    ..++|+|||+.|+..  ..+|    . .|.+|| ..+++.  ...+..+  ...+. .++|||||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg  371 (723)
T 1xfd_A          294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTT
T ss_pred             EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCC
Confidence            21      233    388999999977754  4565    2 246677 344431  4445432  22344 46999999


Q ss_pred             CcccEEEEEeCC---CcEEEEecCCCc
Q 019672          232 QFQDILVATSSS---GSLHVFSPGFAI  255 (337)
Q Consensus       232 ~~~~~las~s~d---g~v~iw~l~~~~  255 (337)
                      +   +|+..+.+   +.++||+++...
T Consensus       372 ~---~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          372 N---KIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             T---EEEEEESSSCTTCCEEEEECSST
T ss_pred             C---EEEEEEcCCCCcceEEEEEeCCC
Confidence            9   88766555   789999987543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=2.4e-15  Score=136.97  Aligned_cols=281  Identities=11%  Similarity=-0.048  Sum_probs=166.1

Q ss_pred             EEEcCCCCEEEEEcC-Cc---eEEEeCCCCcEEEEEeeCCEE--EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           13 VSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        13 ~~fs~dg~~la~g~~-~g---~~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      .+|+|||++|+.+++ ++   +.+||+++++.......+...  ...+.+++..+++++.       ++.|.+||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCc
Confidence            789999999888776 56   677899888765433222211  2457778888888775       6799999999998


Q ss_pred             EEEEEEcCCc-eeEE--EEcCCeEEEE-------------------------ECCeEEEEECCCCeeeeeecCCCCCceE
Q 019672           87 ALRELNFLTS-ILAV--RLNKKRLVIV-------------------------LREKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        87 ~~~~~~~~~~-v~~i--~~~~~~~~v~-------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                      ....+..+.. +...  .++++...++                         .+..|++||+.+++....... .  ..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~--~~~  190 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N--QWL  190 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S--SCE
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-C--ccc
Confidence            7766665553 2222  2355543332                         125799999998865433322 2  234


Q ss_pred             EEEeeCC-CccEEEEcCCCC----ccEEEEEEccCCccc--cc----CceEEEEeCCCCCEEEEEeCC-Cc---EEEEEE
Q 019672          139 CAFSPSL-NACFLAVPASTT----KGSVLVYNVMELHSH--CE----APLAAIVLSSNGMYIATASEQ-GT---IIRVFL  203 (337)
Q Consensus       139 ~~~~~~~-~~~~la~~~~~~----dg~v~i~d~~~~~~~--~~----~~i~~~~~s~dg~~lat~s~d-g~---~i~vwd  203 (337)
                      ..+.++| ++..+++.....    ...|.++|+......  ..    ..+...+|+|||+.|+..+.+ +.   .|++||
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  270 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSAD  270 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEEC
T ss_pred             cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEe
Confidence            5666778 888887765311    337888887654322  11    247889999999988765542 22   268999


Q ss_pred             cCCCcee--EeeccCCccee---EEEEEeecCCCcccEEEEE---------eCCCcEEEEecCCCcccCCCCcccccccc
Q 019672          204 VSEATKS--YSFRRGTYPST---IFSLSFGQSMQFQDILVAT---------SSSGSLHVFSPGFAINQRRGGRTSSILGS  269 (337)
Q Consensus       204 ~~~~~~~--~~~~~~~~~~~---i~~l~fs~dg~~~~~las~---------s~dg~v~iw~l~~~~~~~~~~~~~~~~~~  269 (337)
                      +.+++..  ..+..  ....   ...++|||||+   +|+..         ..+..|++||+.++...+-......+.. 
T Consensus       271 ~~~g~~~~l~~~~~--~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~-  344 (388)
T 3pe7_A          271 PETLENRQLTSMPA--CSHLMSNYDGSLMVGDGS---DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKV-  344 (388)
T ss_dssp             TTTCCEEEEEEECC--EEEEEECTTSSEEEEEEC---CC------------CCCCEEEEEETTTTEEEEEEECCCCCCC-
T ss_pred             cCCCceEEEEcCCC--ceeeeecCCCCeEccCCC---cceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccc-
Confidence            9998743  22221  0000   11237999999   77754         4556899999986543110000000000 


Q ss_pred             cccccceeecccccceeeeeccCCCcccCEEEEEE-eCCcEEEEEEecCCC
Q 019672          270 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINNC  319 (337)
Q Consensus       270 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~~~~~~~~~~~~  319 (337)
                      .......          ....+.+.+++++|+..+ .+|...+|.++....
T Consensus       345 ~~~~~~~----------~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~  385 (388)
T 3pe7_A          345 FEGDRQV----------THPHPSFTPDDKQILFTSDVHGKPALYLATLPES  385 (388)
T ss_dssp             BTTBSST----------TCCCCEECTTSSEEEEEECTTSSCEEEEEECCGG
T ss_pred             ccccccc----------CCCCccCCCCCCEEEEEecCCCceeEEEEECChh
Confidence            0000000          011122355667777665 488888888876644

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.72  E-value=5.3e-16  Score=149.48  Aligned_cols=192  Identities=14%  Similarity=0.069  Sum_probs=134.3

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEEC-----CeEEEE--
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVLR-----EKTYIY--  118 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~d-----~~i~i~--  118 (337)
                      ..+..+.+.+++..+++++.      .|++++||++.+++......++ ..+..+.|+|+.++...+     ....+|  
T Consensus        22 ~~~~~~~~~~DG~~la~~s~------~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGF------SEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEE------ETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred             cchheeecCCCCCeEEEEEc------cCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence            45677788889999998875      3889999999766554433444 378899999996555442     344554  


Q ss_pred             EC-CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc--cCceEEEEeCCCCCEEEEEeCC
Q 019672          119 DA-NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--EAPLAAIVLSSNGMYIATASEQ  195 (337)
Q Consensus       119 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--~~~i~~~~~s~dg~~lat~s~d  195 (337)
                      ++ ..+... .+.... .....++++++++..+++..   ++.+.+||+.+++...  ..+-.+++|||||++||+++.+
T Consensus        96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~  170 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFF  170 (582)
T ss_dssp             ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred             eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEc
Confidence            54 122222 333222 23456888887766666654   3445599998876432  2233899999999999988877


Q ss_pred             ----CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC--cEEEEecCCCcc
Q 019672          196 ----GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSPGFAIN  256 (337)
Q Consensus       196 ----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg--~v~iw~l~~~~~  256 (337)
                          +. |++||+.+++.. .+..  +...+.+++|||||+   +|++++.++  .|++||++++..
T Consensus       171 ~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~---~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          171 GGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMK---VTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             ETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSC---EEEEEECSSCEEEEEECTTTCCE
T ss_pred             CCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCC---EEEEccCCCeeEEEEEcCCCCcE
Confidence                55 789999988764 4432  345689999999999   999888888  899999976543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=2.5e-14  Score=129.84  Aligned_cols=267  Identities=9%  Similarity=0.042  Sum_probs=158.5

Q ss_pred             EEEEcC---CceEEEe--CCCCcEEEEEe---e--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC-CCCEEEE
Q 019672           22 FALSTK---DGFKIFD--SSTGRLCYERA---V--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTALRE   90 (337)
Q Consensus        22 la~g~~---~g~~vw~--~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~-~~~~~~~   90 (337)
                      +++|+.   +++.+|+  .+++++.....   .  .....+.+.++...++.++.       + .|.+||+. +++....
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~-------~-~v~~~~~~~~g~~~~~   76 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-------K-KWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-------T-EEEEEEEEETTEEEEE
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc-------c-eEEEEEECCCCCEEEe
Confidence            555543   3566554  56676532211   1  23445667777776655543       4 89999987 7766543


Q ss_pred             EEc--CCceeEEEEcCCeE--EE--E--------------ECCeEEEEECC-CCeeeeeecC--CCCCceEEEEeeCCCc
Q 019672           91 LNF--LTSILAVRLNKKRL--VI--V--------------LREKTYIYDAN-TLAILDTIDT--VPNLKGLCAFSPSLNA  147 (337)
Q Consensus        91 ~~~--~~~v~~i~~~~~~~--~v--~--------------~d~~i~i~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  147 (337)
                      ..+  ...+..+.+++++-  ++  +              .++.+.+|++. +++....+..  ........++.++|++
T Consensus        77 ~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            332  23345577777654  33  2              35689999997 4554433321  1122345566778888


Q ss_pred             cEEEEcCCCCccEEEEEEcc-CCccc---------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC--CCcee---Ee
Q 019672          148 CFLAVPASTTKGSVLVYNVM-ELHSH---------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATKS---YS  212 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~-~~~~~---------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~--~~~~~---~~  212 (337)
                      .+++++.. .++.|.+||+. +++..         +...+..++|+|||++|+++++.+..|.+|++.  +|+..   ..
T Consensus       157 ~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          157 TYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             SEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEEcC-CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence            88777653 36799999997 55431         124588999999999998888643346899765  56542   12


Q ss_pred             e---ccCC--cce------eEEEEE-eecCCCcccEEEEEeCC-C-----cEEEEecCCCcccCCCCccccccccccccc
Q 019672          213 F---RRGT--YPS------TIFSLS-FGQSMQFQDILVATSSS-G-----SLHVFSPGFAINQRRGGRTSSILGSILPES  274 (337)
Q Consensus       213 ~---~~~~--~~~------~i~~l~-fs~dg~~~~~las~s~d-g-----~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~  274 (337)
                      +   ..+.  +..      .+..++ |||||+   +|+++..+ +     +|++|+++.......       .....+..
T Consensus       236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~-------~~~~~~~~  305 (365)
T 1jof_A          236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGK---YMFASSRANKFELQGYIAGFKLRDCGSIEK-------QLFLSPTP  305 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---EEEEEEEESSTTSCCEEEEEEECTTSCEEE-------EEEEEECS
T ss_pred             EEcCCCCcCCcccccccccccccEEEECCCCC---EEEEECCCCCCCCCCeEEEEEECCCCCEEE-------eeeeeecC
Confidence            2   1111  011      478899 999999   87776543 3     899999963211110       00000000


Q ss_pred             ceeecccccceeeeeccCCCc---ccCEEEEEEeC-CcEEEEEEecC
Q 019672          275 VNEVLDPADHHVLRNAFPAGV---KRASVSVITYN-GYFVEYIFSIN  317 (337)
Q Consensus       275 ~~~~w~~~~~~~~~~~~~~~~---~~~~l~~~~~d-g~~~~~~~~~~  317 (337)
                      ....          ..+++.|   ++++|++++.+ +.+.+|+++.+
T Consensus       306 ~~~~----------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          306 TSGG----------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCT----------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCc----------ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            0000          0112234   56889888875 99999999876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=7.2e-14  Score=125.02  Aligned_cols=234  Identities=8%  Similarity=0.033  Sum_probs=158.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-------------------------ceEEEeCCCCcEEEEEee---CCEEEEEEccCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKD-------------------------GFKIFDSSTGRLCYERAV---GAFSIVEMLYSS   58 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~-------------------------g~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~   58 (337)
                      -+.+.+++|+|+|+++++...+                         .+.+||.++++++.....   .....+++..+.
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999888766                         479999988887654431   234455666566


Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCC-EEEEEEc----------CCceeEEEEcC-C-eEEEEE---CCeEEEEECCC
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGT-ALRELNF----------LTSILAVRLNK-K-RLVIVL---REKTYIYDANT  122 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~-~~~~~~~----------~~~v~~i~~~~-~-~~~v~~---d~~i~i~d~~~  122 (337)
                      +++ ++..      .+++|++||..... .+..+..          -.....|++++ + .++++.   ++.|++|| .+
T Consensus       103 ~l~-v~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          103 NYW-VTDV------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             CEE-EEET------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CEE-EEEC------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            633 3332      47899999986542 4555421          12578899986 3 455554   46899999 56


Q ss_pred             CeeeeeecCCCC--------CceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccccc-------CceEEEEeCCCC
Q 019672          123 LAILDTIDTVPN--------LKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCE-------APLAAIVLSSNG  186 (337)
Q Consensus       123 ~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~~-------~~i~~~~~s~dg  186 (337)
                      ++.+..+.....        ......++.+++ +.++++..  .++.|++||..+++....       ..+.+++|+| |
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            666666532211        112445666676 55555444  478999999986654422       5688999999 4


Q ss_pred             CEEEEE-------eCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          187 MYIATA-------SEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       187 ~~lat~-------s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      ..+++.       +.+.+ |++||..+++.+..+... .+......|+|+|+|.   ++++...+++|++|+++...
T Consensus       252 ~~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~---lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT---VYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE---EEEEESSSCCEEEEEEEECS
T ss_pred             EEEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC---EEEEECCCCEEEEEeCCccc
Confidence            333333       33345 689999999998877421 1223478999999998   99999999999999986543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=3e-15  Score=148.50  Aligned_cols=240  Identities=11%  Similarity=0.042  Sum_probs=153.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCC-----EEE--EEEccCCCEEEEEeCCCCC--CCCCceEEE
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGA-----FSI--VEMLYSSSLLAIVGAGEQP--SLSPRRLCL   79 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~~--~~~d~~v~i   79 (337)
                      ...+++|+|||++++++ ++.+++||+.+++.......+.     +..  ..+.+++..+++.+.....  .+..+.+.+
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            46689999999998887 6668999999987644333221     122  5677888888777641000  011257789


Q ss_pred             EECCCCCEEEEEEcCCceeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCceE-----------------EE
Q 019672           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGL-----------------CA  140 (337)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------~~  140 (337)
                      ||+++++......+...+....|+|++  ++.+.++.|++||+.+++..+ +....+...+                 .+
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcc
Confidence            999998765433345678899999875  555569999999998876443 2221211111                 13


Q ss_pred             EeeCCCccEEEEcCCC----------------------------------CccEEEEEEccC---C---ccc--------
Q 019672          141 FSPSLNACFLAVPAST----------------------------------TKGSVLVYNVME---L---HSH--------  172 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~----------------------------------~dg~v~i~d~~~---~---~~~--------  172 (337)
                      +.++||+..||+...+                                  ...+|.+||+.+   +   +..        
T Consensus       176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            5677888888876310                                  112688899988   6   211        


Q ss_pred             --ccCceEEEEeCCCCCEEEEEeCCC---cEEEEEEcCCCc----ee--Eee-ccCCccee-----EEEEEeecCCCccc
Q 019672          173 --CEAPLAAIVLSSNGMYIATASEQG---TIIRVFLVSEAT----KS--YSF-RRGTYPST-----IFSLSFGQSMQFQD  235 (337)
Q Consensus       173 --~~~~i~~~~~s~dg~~lat~s~dg---~~i~vwd~~~~~----~~--~~~-~~~~~~~~-----i~~l~fs~dg~~~~  235 (337)
                        +...+..++|+|||+.++.....+   ..|++||+.+|+    +.  .++ ..+ +..-     ..+++|||||+   
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~-~~~~v~~~~~~~p~fspDG~---  331 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS-TTGWVGRFRPSEPHFTLDGN---  331 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC-SSSCSSSSSCCCCEECTTSS---
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc-CCceEccCcCCCceEcCCCC---
Confidence              224589999999999777664322   236899999987    22  111 111 1111     23678999999   


Q ss_pred             EEE-EEeC-CCc--EEEEecCCC
Q 019672          236 ILV-ATSS-SGS--LHVFSPGFA  254 (337)
Q Consensus       236 ~la-s~s~-dg~--v~iw~l~~~  254 (337)
                      .|+ ..+. +|.  |++|++...
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEEEEEEcCCCceEEEEEECCCC
Confidence            776 6654 454  666776644

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=4.6e-14  Score=128.47  Aligned_cols=282  Identities=10%  Similarity=-0.058  Sum_probs=163.5

Q ss_pred             eEEEEEcCCCCEEEEEcCC----ceEEEeCCCCcEEEEEeeCCE-E-EEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672           10 VFFVSFNQDNSGFALSTKD----GFKIFDSSTGRLCYERAVGAF-S-IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~----g~~vw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      +.+++|+|||++|+.....    .+.+||+.+++.......... . ...+.++++.+++++.       ++.|.+||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-------ELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-------TTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-------CCcEEEEECC
Confidence            6678999999998766543    357789888765432221111 1 1456778888888775       5689999999


Q ss_pred             CCCEEEEEEcCCce-eE---EE----------------EcCCe--EEE------EECCeEEEEECCCCeeeeeecCCCCC
Q 019672           84 TGTALRELNFLTSI-LA---VR----------------LNKKR--LVI------VLREKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        84 ~~~~~~~~~~~~~v-~~---i~----------------~~~~~--~~v------~~d~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      +++.......+... ..   +.                ++++.  +++      ..+..|++||+.+++.......   .
T Consensus       111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~  187 (396)
T 3c5m_A          111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---T  187 (396)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---S
T ss_pred             CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC---C
Confidence            98866555433321 11   11                22221  111      1244799999988765444321   2


Q ss_pred             ceEEEEeeCC-CccEEEEcCCCCc----cEEEEEEccCCccc--cc----CceEEEEeCCCCCEEEEEeCC-C---cEEE
Q 019672          136 KGLCAFSPSL-NACFLAVPASTTK----GSVLVYNVMELHSH--CE----APLAAIVLSSNGMYIATASEQ-G---TIIR  200 (337)
Q Consensus       136 ~~~~~~~~~~-~~~~la~~~~~~d----g~v~i~d~~~~~~~--~~----~~i~~~~~s~dg~~lat~s~d-g---~~i~  200 (337)
                      ..+..+.++| ++..+++......    ..|.+||+......  ..    ..+..++|+|||++|+.++.+ +   ..|+
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            2344555666 5666665432122    46889998665421  11    247889999999988877654 1   2268


Q ss_pred             EEEcCCCceeEeeccCCcceeEEEEEeec-CCCcccEEEEEe----------------CCCcEEEEecCCCcccCCCCcc
Q 019672          201 VFLVSEATKSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATS----------------SSGSLHVFSPGFAINQRRGGRT  263 (337)
Q Consensus       201 vwd~~~~~~~~~~~~~~~~~~i~~l~fs~-dg~~~~~las~s----------------~dg~v~iw~l~~~~~~~~~~~~  263 (337)
                      +||+.+++........  .  .. ++|+| ||+   +|+.++                .++.|++||+.++....- ...
T Consensus       268 ~~d~~~g~~~~l~~~~--~--~~-~~~s~~dg~---~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~~~  338 (396)
T 3c5m_A          268 KANPETLENEEVMVMP--P--CS-HLMSNFDGS---LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL-CKH  338 (396)
T ss_dssp             EECTTTCCEEEEEECC--S--EE-EEEECSSSS---EEEEEECCC----------CCCCCCEEEEEETTTTBCCEE-EEC
T ss_pred             EEECCCCCeEEeeeCC--C--CC-CCccCCCCc---eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc-cCC
Confidence            9999988754322111  1  22 89999 999   888765                346799999876542110 000


Q ss_pred             cccccccccccceeecccccceeeeeccCCCcccCEEEEEEe-CCcEEEEEEecCCCC
Q 019672          264 SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NGYFVEYIFSINNCC  320 (337)
Q Consensus       264 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~~~~~~~~~~~~~  320 (337)
                      ..-...+.+......          ....+.+++++|+..+. +|...+|.++...+.
T Consensus       339 ~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~  386 (396)
T 3c5m_A          339 STSWDVLDGDRQITH----------PHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY  386 (396)
T ss_dssp             CCCCCCBTTBSSTTC----------CCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred             CCccccccccccCCC----------CCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence            000000000000000          01122455677776664 688889988877665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=9.7e-14  Score=125.93  Aligned_cols=223  Identities=9%  Similarity=0.088  Sum_probs=146.4

Q ss_pred             EEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeC--------CEEEEEEccCCCEEEEEeCCCCCCC
Q 019672           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG--------AFSIVEMLYSSSLLAIVGAGEQPSL   72 (337)
Q Consensus        12 ~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~   72 (337)
                      .++|+|||++++++.           ++.+.+||+.+++.+......        ....+.+.+++..+.....+     
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----  128 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----  128 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----
Confidence            789999999988875           234799999998887665432        12345677777776655431     


Q ss_pred             CCceEEEEECCCCCEEEE-EEcCCceeEEEEcCC---eEEEEE-CCeEEEEECCC-Ceeee------eecCCCCCceEEE
Q 019672           73 SPRRLCLFNTTTGTALRE-LNFLTSILAVRLNKK---RLVIVL-REKTYIYDANT-LAILD------TIDTVPNLKGLCA  140 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~---~~~v~~-d~~i~i~d~~~-~~~~~------~~~~~~~~~~~~~  140 (337)
                      .+++|.+||+.+++.+.+ +..... ..+.+.+.   .++... |+++.+|++.. ++...      .+.....+.   .
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~---~  204 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI---F  204 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB---C
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce---E
Confidence            268999999999988877 655432 22334442   233333 88999998854 44431      122211211   1


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCccc--c-----------c----CceEEEEeCCCCCEEEEEeC---------
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSH--C-----------E----APLAAIVLSSNGMYIATASE---------  194 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--~-----------~----~~i~~~~~s~dg~~lat~s~---------  194 (337)
                      +...+++..+++.+  .++.|.++|+......  .           .    .....++|+||++++..+..         
T Consensus       205 ~~~~~~g~~~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          205 IAPALDKDKAHFVS--YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             SCCEECSSEEEEEB--TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             EEecccCCEEEEEe--CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence            11223333444444  3688999998643211  0           0    11223789999888777653         


Q ss_pred             --CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          195 --QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       195 --dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                        .++ |.+||+.+++.+.++..+.    +.+|+|+|||+   +|++++. ++|.|||+++.
T Consensus       283 ~~~~~-v~viD~~t~~~v~~i~~~~----p~~ia~spdg~---~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          283 FPAAE-IWVMDTKTKQRVARIPGRD----ALSMTIDQQRN---LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             CCCSE-EEEEETTTTEEEEEEECTT----CCEEEEETTTT---EEEEECS-SCEEEEECSSS
T ss_pred             CCCce-EEEEECCCCcEEEEEecCC----eeEEEECCCCC---EEEEeCC-CeEEEEECCCC
Confidence              224 6899999999999886542    78899999999   8988887 99999999876

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=1.5e-12  Score=116.35  Aligned_cols=225  Identities=11%  Similarity=0.040  Sum_probs=156.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      ....+.+.. ++.+++... +.+.+||..+++.+..... .....+.+..+. . ++++..     .++.|.+||.++++
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~-lyv~~~-----~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-K-AYVTQI-----WDYRIFIINPKTYE  116 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-E-EEEEEB-----SCSEEEEEETTTTE
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-e-EEEEEC-----CCCeEEEEECCCCe
Confidence            356677743 334444443 4579999999988766542 334444554444 3 344431     37899999999999


Q ss_pred             EEEEEEcCC------ceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           87 ALRELNFLT------SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        87 ~~~~~~~~~------~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      .+.++....      ....+.+..+.++++.   ++.|.++|+.+++.+..+.....+..   +..++++.+++++.. .
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~---i~~~~dG~l~v~~~~-~  192 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS---LVMDKYNKMWTITDG-G  192 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC---CEECTTSEEEEEBCC-B
T ss_pred             EEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc---eEEcCCCCEEEEECC-C
Confidence            888887655      5667777788888875   67999999999998888876555433   344667776666542 1


Q ss_pred             ---------ccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe-eccCCccee
Q 019672          158 ---------KGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS-FRRGTYPST  221 (337)
Q Consensus       158 ---------dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~-~~~~~~~~~  221 (337)
                               .+.|.++|..+++....      .....++|+||+++|..+..  . |.+||..+++.... +... ....
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~-~~~~  268 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEF-RDTK  268 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCC-CSSC
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecC-CCCc
Confidence                     27899999988765432      35899999999999888765  5 57999998876321 1111 1234


Q ss_pred             EEEEEeec-CCCcccEEEEE----eCCCcEEEEecC
Q 019672          222 IFSLSFGQ-SMQFQDILVAT----SSSGSLHVFSPG  252 (337)
Q Consensus       222 i~~l~fs~-dg~~~~~las~----s~dg~v~iw~l~  252 (337)
                      ...++++| ++.   ++++.    ..+++|.+||.+
T Consensus       269 p~gi~vdp~~g~---lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          269 YYGLTVNPNNGE---VYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEEEECTTTCC---EEEEECTTSSSEEEEEEECTT
T ss_pred             eEEEEEcCCCCe---EEEEcccccccCCEEEEECCC
Confidence            78899999 555   66776    678999999986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.59  E-value=1.3e-12  Score=116.85  Aligned_cols=209  Identities=10%  Similarity=0.034  Sum_probs=145.1

Q ss_pred             CceEEEeCCCCcEEEEEe-------eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEE
Q 019672           28 DGFKIFDSSTGRLCYERA-------VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAV  100 (337)
Q Consensus        28 ~g~~vw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i  100 (337)
                      .++.+||.++++......       .+... -.+.++.+.+.++..      .+++|.+||.++++.+.++........+
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~-~~i~~~~~~lyv~~~------~~~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVA-QSMVIRDGIGWIVVN------NSHVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCE-EEEEEETTEEEEEEG------GGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccc-eEEEEECCEEEEEEc------CCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence            458999999988654321       11111 122234555555544      3789999999999999998766778888


Q ss_pred             EEc-CCeEEEEE--CCeEEEEECCCCeeeeeecCCC------CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672          101 RLN-KKRLVIVL--REKTYIYDANTLAILDTIDTVP------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (337)
Q Consensus       101 ~~~-~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~  171 (337)
                      .++ .+.++++.  ++.|.+||+.+++....+....      .+.++. +  +. +.++++... .++.|.++|+.+++.
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~-~--~~-~~lyv~~~~-~~~~v~viD~~t~~~  164 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV-Q--YG-KYVYVNCWS-YQNRILKIDTETDKV  164 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE-E--ET-TEEEEEECT-TCCEEEEEETTTTEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE-E--EC-CEEEEEcCC-CCCEEEEEECCCCeE
Confidence            884 45666666  7899999999998887776554      444443 3  22 333333221 268999999998775


Q ss_pred             ccc----CceEEEEeCCCCCEEEEEeCC----------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672          172 HCE----APLAAIVLSSNGMYIATASEQ----------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       172 ~~~----~~i~~~~~s~dg~~lat~s~d----------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      ..+    .....++++|+|++++++..+          +. |.++|..+++.+..+.... ......++|+||++   +|
T Consensus       165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~---~l  239 (328)
T 3dsm_A          165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRD---TL  239 (328)
T ss_dssp             EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCT-TCCCEEEEECTTSC---EE
T ss_pred             EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCC-CCCceeEEEecCCC---EE
Confidence            543    446789999999987776654          55 6899999998876664321 12467899999998   77


Q ss_pred             EEEeCCCcEEEEecCCCc
Q 019672          238 VATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       238 as~s~dg~v~iw~l~~~~  255 (337)
                      .++..  +|.+||+++.+
T Consensus       240 yv~~~--~v~~~d~~t~~  255 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADR  255 (328)
T ss_dssp             EEESS--SEEEEETTCSS
T ss_pred             EEEcc--EEEEEECCCCc
Confidence            77654  89999987654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.57  E-value=7e-14  Score=137.91  Aligned_cols=169  Identities=15%  Similarity=0.082  Sum_probs=117.6

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC----ceeEEEEcCCe--EEEEEC----------CeEEEEECCCCeeeeeecCCCCCc
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT----SILAVRLNKKR--LVIVLR----------EKTYIYDANTLAILDTIDTVPNLK  136 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~----~v~~i~~~~~~--~~v~~d----------~~i~i~d~~~~~~~~~~~~~~~~~  136 (337)
                      .|++|++||..+++....+..+.    .+.+++|+|++  ++.+.+          +.|++||+.+++.+......   .
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~  110 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---R  110 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---S
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---c
Confidence            38899999999999877665543    38899998875  343433          68999999988763211111   1


Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------Cce-----------------EEEEeCCCCCEEEEEe
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APL-----------------AAIVLSSNGMYIATAS  193 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i-----------------~~~~~s~dg~~lat~s  193 (337)
                      .+..++++||+..||+..   ++.|++||+.+++....      ..|                 .+++|||||++||+++
T Consensus       111 ~~~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             SBCCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             ccccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            244566778888999875   68999999987654311      112                 4899999999999998


Q ss_pred             CCCc---------------------------------EEEEEEcCCCcee--Eeecc----CCcceeEEEEEeecCCCcc
Q 019672          194 EQGT---------------------------------IIRVFLVSEATKS--YSFRR----GTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       194 ~dg~---------------------------------~i~vwd~~~~~~~--~~~~~----~~~~~~i~~l~fs~dg~~~  234 (337)
                      .|..                                 .|++||+.+++.+  ..+..    ..+...+.+++||||++  
T Consensus       188 ~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~--  265 (719)
T 1z68_A          188 FNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER--  265 (719)
T ss_dssp             EECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE--
T ss_pred             ECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe--
Confidence            6531                                 3689999988753  12211    12345689999999987  


Q ss_pred             cEEEEEeCCC----cEEEEe
Q 019672          235 DILVATSSSG----SLHVFS  250 (337)
Q Consensus       235 ~~las~s~dg----~v~iw~  250 (337)
                       ++++....+    .|.+||
T Consensus       266 -~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          266 -VCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             -EEEEEEESSTTEEEEEEEE
T ss_pred             -EEEEEeccccCeEEEEEEc
Confidence             777754332    388888

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.55  E-value=5.2e-13  Score=121.38  Aligned_cols=239  Identities=11%  Similarity=0.014  Sum_probs=144.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEee--CCEEEEE--EccCCCEEEEEeCC-CC-------------
Q 019672            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVE--MLYSSSLLAIVGAG-EQ-------------   69 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~g-~~-------------   69 (337)
                      .+..+.|+|||+.|+.+..+ .+.+||+.+++.......  .......  ...+...++..... ..             
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF  161 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence            34467899999999888765 579999999876433322  2222222  24445554432100 00             


Q ss_pred             -CCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcC-CeEEE--EEC-------CeEEEEECCCCeeeeeecCCCCCceE
Q 019672           70 -PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KRLVI--VLR-------EKTYIYDANTLAILDTIDTVPNLKGL  138 (337)
Q Consensus        70 -~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~~~v--~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (337)
                       ....+..|.+||+.+++..........+..+.|+| ++-.+  +..       ..|.++|+..++. ..+........+
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~  240 (388)
T 3pe7_A          162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESC  240 (388)
T ss_dssp             GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEE
T ss_pred             hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccc
Confidence             00135789999999998766666666788999999 76433  332       2688888765543 333322222245


Q ss_pred             EEEeeCCCccEEEEcCCC---CccEEEEEEccCCcccc--c-Cc-------eEEEEeCCCCCEEEEEe---------CCC
Q 019672          139 CAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHC--E-AP-------LAAIVLSSNGMYIATAS---------EQG  196 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~~~~--~-~~-------i~~~~~s~dg~~lat~s---------~dg  196 (337)
                      ....++|++..|++.+..   .++.|.+||+.+++...  . ..       ...++|+|||+.|+...         .+.
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            566778888877664421   12349999998876321  1 11       22237999999888653         334


Q ss_pred             cEEEEEEcCCCceeEeeccCCcc---------eeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCC
Q 019672          197 TIIRVFLVSEATKSYSFRRGTYP---------STIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  253 (337)
Q Consensus       197 ~~i~vwd~~~~~~~~~~~~~~~~---------~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~  253 (337)
                      . |++||+.+++.. .+..+...         ..+.+++|||||+   +|+.++ .+|..+||.++-
T Consensus       321 ~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~---~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          321 F-LYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDK---QILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             E-EEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEEC
T ss_pred             E-EEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCC---EEEEEecCCCceeEEEEEC
Confidence            4 789999987653 33322110         0367789999999   777665 467788887643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.54  E-value=5.3e-12  Score=112.99  Aligned_cols=223  Identities=12%  Similarity=0.118  Sum_probs=141.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCC---c---eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC-----------CC
Q 019672            9 PVFFVSFNQDNSGFALSTKD---G---FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-----------PS   71 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~---g---~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------~~   71 (337)
                      .+.+++|+|||++|+....+   +   +.+|++++++.........+..+.+.++++.+++++....           +.
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            46789999999998876542   2   5777888876543322222556667777888888763100           00


Q ss_pred             ---------CCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE--C------C-eEEEEECCCCeeeeeecCCC
Q 019672           72 ---------LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--R------E-KTYIYDANTLAILDTIDTVP  133 (337)
Q Consensus        72 ---------~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d------~-~i~i~d~~~~~~~~~~~~~~  133 (337)
                               .....|.+||+.+++.+..+..+ .+..+.|++++++++.  +      . ...||.+.+++. ..+..+ 
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-  216 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-  216 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-
Confidence                     01367999999988764444444 7888999999844433  2      1 334443334443 333222 


Q ss_pred             CCceEEEEeeCCCccEEEEcCCCC------ccEEEEEEccCCccc-----ccCceEE-EEeCCCCCEEEEEeCCCcEEEE
Q 019672          134 NLKGLCAFSPSLNACFLAVPASTT------KGSVLVYNVMELHSH-----CEAPLAA-IVLSSNGMYIATASEQGTIIRV  201 (337)
Q Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~------dg~v~i~d~~~~~~~-----~~~~i~~-~~~s~dg~~lat~s~dg~~i~v  201 (337)
                        .....+  +|++..+++.+...      ...|.+||  +++..     +...+.. ++|+ || ++++++.+|. ++|
T Consensus       217 --~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l  287 (347)
T 2gop_A          217 --VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNL  287 (347)
T ss_dssp             --ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEE
T ss_pred             --cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEE
Confidence              223333  56777777655311      25788888  33321     1256776 9999 98 9999999997 699


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE-EEEecC
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL-HVFSPG  252 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v-~iw~l~  252 (337)
                      | +.+++....+ .+  ...|.+++|+|  .   ++++++.+++. +||.++
T Consensus       288 ~-~~~g~~~~~~-~~--~~~v~~~~~s~--~---~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          288 Y-IWDGEIKPIA-KG--RHWIMGFDVDE--I---VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             E-EESSSEEEEE-CS--SSEEEEEEESS--S---EEEEEECSSSCCEEEEES
T ss_pred             E-EcCCceEEEe-cC--CCeEEeeeeeC--c---EEEEEcCCCChHHheEeC
Confidence            9 8766653333 22  45689999999  6   78888777765 888876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=2.7e-12  Score=127.21  Aligned_cols=173  Identities=16%  Similarity=0.095  Sum_probs=119.3

Q ss_pred             CceEEEEECCCCCEEEEEEcCC------ceeEEEEcCCe--EEEEEC----------CeEEEEECCCCeeeeeecCCCCC
Q 019672           74 PRRLCLFNTTTGTALRELNFLT------SILAVRLNKKR--LVIVLR----------EKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~------~v~~i~~~~~~--~~v~~d----------~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      |++|++||+.++++...+..+.      ...++.++|++  +++..+          +.+.+||+.+++... +..+  +
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~--~  111 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERI--P  111 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC--C
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccC--C
Confidence            6799999999999876665443      12346778775  344443          567899999987543 3332  2


Q ss_pred             ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------Cce-----------------EEEEeCCCCCEEEEE
Q 019672          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------APL-----------------AAIVLSSNGMYIATA  192 (337)
Q Consensus       136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i-----------------~~~~~s~dg~~lat~  192 (337)
                      ..+...+++||+..||+..   ++.|.+||+.++....-      ..+                 ..++|||||++||.+
T Consensus       112 ~~~~~~~~SPdG~~la~~~---~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          112 NNTQWVTWSPVGHKLAYVW---NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TTEEEEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             CcceeeEECCCCCEEEEEE---CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence            3466777888999999885   68999999987653321      112                 358999999999998


Q ss_pred             eCCCc-----------------------------------EEEEEEcCC---Cc--eeEeeccC----CcceeEEEEEee
Q 019672          193 SEQGT-----------------------------------IIRVFLVSE---AT--KSYSFRRG----TYPSTIFSLSFG  228 (337)
Q Consensus       193 s~dg~-----------------------------------~i~vwd~~~---~~--~~~~~~~~----~~~~~i~~l~fs  228 (337)
                      +.|.+                                   .|++||+.+   ++  ...++...    .+...+..++||
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            74432                                   367899988   73  22333221    134568999999


Q ss_pred             cCCCcccEEEEEeCC----CcEEEEecCCCc
Q 019672          229 QSMQFQDILVATSSS----GSLHVFSPGFAI  255 (337)
Q Consensus       229 ~dg~~~~~las~s~d----g~v~iw~l~~~~  255 (337)
                      |||+   +++.....    ..|.+||+.+++
T Consensus       269 pdg~---~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          269 TQER---ISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             ETTE---EEEEEEESSTTEEEEEEEEEETTT
T ss_pred             CCCe---EEEEEeCCCCCEEEEEEEECCCCc
Confidence            9998   77766443    379999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=5.7e-11  Score=113.72  Aligned_cols=230  Identities=15%  Similarity=0.097  Sum_probs=154.2

Q ss_pred             cCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC--CCCEEEEE
Q 019672           16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALREL   91 (337)
Q Consensus        16 s~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~--~~~~~~~~   91 (337)
                      ++++.++++...++ +.++|.++++.+.....+ ....+.+.++...+...+       .|+.|.+||+.  +++.+.++
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-------~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-------CCCeEEEEECCCCCCcEeEEE
Confidence            34444555555544 799999999988776543 334566777777765543       37899999995  88888888


Q ss_pred             EcCCceeEEEEc----CC--eEEEEE--CCeEEEEECCCCeeeeeecCCCC---------CceEEEEeeCCCccEEEEcC
Q 019672           92 NFLTSILAVRLN----KK--RLVIVL--REKTYIYDANTLAILDTIDTVPN---------LKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        92 ~~~~~v~~i~~~----~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~  154 (337)
                      ........+.++    ++  .++++.  ++++.++|..+.+.+..+.+...         ...+.++..++++..+++.-
T Consensus       237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            877777889998    34  455555  78999999999998888764321         11344455455544444333


Q ss_pred             CCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-CCcceeEEEEE-
Q 019672          155 STTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLS-  226 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-~~~~~~i~~l~-  226 (337)
                      . .+|.|.++|..+.+...      ......+.|+|||+++.+++.....|.++|+.+++.+..+.. +..+.+-.... 
T Consensus       317 ~-~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~  395 (567)
T 1qks_A          317 K-ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  395 (567)
T ss_dssp             T-TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             c-CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence            3 58999999987653221      144668899999999888775433478999999998777654 32222111112 


Q ss_pred             eecCCCcccEEEEEe-CCCcEEEEecCCCc
Q 019672          227 FGQSMQFQDILVATS-SSGSLHVFSPGFAI  255 (337)
Q Consensus       227 fs~dg~~~~~las~s-~dg~v~iw~l~~~~  255 (337)
                      ++|++.  ..++++. .+++|.++|....+
T Consensus       396 ~~p~~g--~v~~t~~~g~~~Vsvid~~~~~  423 (567)
T 1qks_A          396 VHPTFG--PVWATSHMGDDSVALIGTDPEG  423 (567)
T ss_dssp             EETTTE--EEEEEEBSSSSEEEEEECCTTT
T ss_pred             ECCCCC--cEEEeCCCCCCeEEEecCCCCC
Confidence            578855  1444443 46899999987643

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=2.3e-11  Score=105.92  Aligned_cols=170  Identities=11%  Similarity=0.142  Sum_probs=118.9

Q ss_pred             CCceEEEEECCCCCEEEEEEcC-------CceeEEEE-cC-CeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFL-------TSILAVRL-NK-KRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~-------~~v~~i~~-~~-~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      .++.|.+||.. ++.+..+...       ..+.++++ .+ ..++++.   ++.|.+|| .+++.+..+... ......+
T Consensus        49 ~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~-~~~~~~~  125 (286)
T 1q7f_A           49 NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT-ILQHPRG  125 (286)
T ss_dssp             GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT-TCSCEEE
T ss_pred             CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc-cCCCceE
Confidence            37899999987 6666665421       35788888 34 4566665   57999999 566666666432 2223456


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +..++++.++++..  .++.|.+||.......      ....+..++++|+|+++++.+.++. |++||. +++.+..+.
T Consensus       126 i~~~~~g~l~v~~~--~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~~~~~  201 (286)
T 1q7f_A          126 VTVDNKGRIIVVEC--KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNY-EGQYLRQIG  201 (286)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEET-TCCEEEEES
T ss_pred             EEEeCCCCEEEEEC--CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE-EEEEcC-CCCEEEEEc
Confidence            67777777766654  3789999996532211      1146899999999998888777776 689997 566666664


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeCCC-cEEEEecC
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG  252 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~dg-~v~iw~l~  252 (337)
                      .......+..|+++|+|+   ++++...++ .|++|+.+
T Consensus       202 ~~g~~~~p~~i~~d~~G~---l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          202 GEGITNYPIGVGINSNGE---ILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             CTTTSCSEEEEEECTTCC---EEEEECSSSCEEEEECTT
T ss_pred             cCCccCCCcEEEECCCCC---EEEEeCCCCEEEEEECCC
Confidence            321123578999999998   888888776 99999953

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=8.1e-12  Score=111.60  Aligned_cols=219  Identities=5%  Similarity=0.031  Sum_probs=138.0

Q ss_pred             ceEEEEECCCCCEEEEEEcC--CceeEEEEcCCe-EEEEE--CCeEEEEECCCCe-eeeeecC-------CCCCceEEEE
Q 019672           75 RRLCLFNTTTGTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLA-ILDTIDT-------VPNLKGLCAF  141 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~-~~~~~~~-------~~~~~~~~~~  141 (337)
                      ++|.+||..+++.+..+...  ....++++++++ ++++.  ++.|++||..... .+..+..       .........+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            58999999999987666432  267889998765 44444  5799999985442 3444421       1112235566


Q ss_pred             eeCC-CccEEEEcCCCCccEEEEEEccCCccccc---------------CceEEEEeCCC-CCEEEEEeCCCcEEEEEEc
Q 019672          142 SPSL-NACFLAVPASTTKGSVLVYNVMELHSHCE---------------APLAAIVLSSN-GMYIATASEQGTIIRVFLV  204 (337)
Q Consensus       142 ~~~~-~~~~la~~~~~~dg~v~i~d~~~~~~~~~---------------~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~  204 (337)
                      +.++ ++.++++.+. .++.|++||. ++.....               .....++++|+ |+++++...+++ |++||.
T Consensus       149 a~~~~~g~lyv~d~~-~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~  225 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGY-CNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKT  225 (329)
T ss_dssp             EECTTTCCEEEEECS-SCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEET
T ss_pred             EEeCCCCeEEEEeCC-CCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEEC
Confidence            7777 6666666542 3789999994 3333221               23889999999 777777777776 799999


Q ss_pred             CCCceeEeeccCCcceeEEEEEeec------CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceee
Q 019672          205 SEATKSYSFRRGTYPSTIFSLSFGQ------SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV  278 (337)
Q Consensus       205 ~~~~~~~~~~~~~~~~~i~~l~fs~------dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (337)
                      .+|+.+..+........+.+++|+|      +|+   .+++.+.+.+|++|++.+++....       ++. .+..+...
T Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~---~~v~~~~~~~v~~~~~~~g~~~~~-------~~~-~~~~~~~p  294 (329)
T 3fvz_A          226 DTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK---PYFGDQEPVQGFVMNFSSGEIIDV-------FKP-VRKHFDMP  294 (329)
T ss_dssp             TTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC---CCTTCSCCCCEEEEETTTCCEEEE-------ECC-SSSCCSSE
T ss_pred             CCCcEEEEEeccccCCCcceeeecCCEEEEeCCC---EEeccCCCcEEEEEEcCCCeEEEE-------EcC-CCCccCCe
Confidence            9899888875443445688999999      333   233333445899999876543211       000 00111111


Q ss_pred             cccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          279 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       279 w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                                ..++..++++.+++...++.|++|+++..
T Consensus       295 ----------~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          295 ----------HDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             ----------EEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             ----------eEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence                      12233555556666777899999988754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.49  E-value=1.4e-11  Score=109.68  Aligned_cols=232  Identities=11%  Similarity=0.050  Sum_probs=145.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEc-CCceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~-~~g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ...|.++.|++++..++... +..++.|.   ++.......  .....+.+..+.+ +.+++.      .++.|.+||.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~------~~~~i~~~d~~   74 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDV------FEGNIFKINPE   74 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSC-EEEEET------TTCEEEEECTT
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCC-EEEEEC------CCCEEEEEeCC
Confidence            45689999999987766544 44568883   333333222  2334445554444 333333      47899999999


Q ss_pred             CCCEEEEE-EcCCceeEEEEcCCe-EEEEE-C-----CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           84 TGTALREL-NFLTSILAVRLNKKR-LVIVL-R-----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        84 ~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +++..... .....+.++.+++++ ++++. .     +.|.+||..+++....+........+..+..++++.++++...
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            88765544 344578999998765 55554 3     4899999987754433322222234567777788877765541


Q ss_pred             C----CccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEE-eCCCcEEEEEEcCC-CceeEeec-----cCCcce
Q 019672          156 T----TKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATA-SEQGTIIRVFLVSE-ATKSYSFR-----RGTYPS  220 (337)
Q Consensus       156 ~----~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~-s~dg~~i~vwd~~~-~~~~~~~~-----~~~~~~  220 (337)
                      .    ..+.|..+|..+++...    ...++.++|+|||+.|..+ +.++. |.+||+.+ ++.+..+.     ......
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~~  233 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGHE  233 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred             ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCCC
Confidence            0    13567777765443221    1467899999999866544 45665 68999964 44332211     000113


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+..++++++|+   ++++...++.|.+||.+
T Consensus       234 ~~~~i~~d~~G~---l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          234 GPDSCCIDSDDN---LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             EEEEEEEBTTCC---EEEEEETTTEEEEECTT
T ss_pred             CCCceEECCCCC---EEEEEcCCCEEEEECCC
Confidence            578899999998   88888888999999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.48  E-value=5.1e-12  Score=114.84  Aligned_cols=232  Identities=11%  Similarity=-0.008  Sum_probs=139.9

Q ss_pred             EEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee-CCE-EE---EE----------------EccCCCEEEEEeCCCC
Q 019672           12 FVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAF-SI---VE----------------MLYSSSLLAIVGAGEQ   69 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~-~~---~~----------------~~~~~~~~~~~~~g~~   69 (337)
                      .+.|+|||++|+.+..++ +.+||+.+++....... ... ..   +.                +.++.+.+++....  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY--  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH--
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec--
Confidence            368999999998776654 79999988865433221 111 00   00                11111221111100  


Q ss_pred             CCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcC-Ce--EEEEEC-------CeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           70 PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KR--LVIVLR-------EKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        70 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~--~~v~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                      ....+..|.+||+.+++..........+..+.|++ +.  ++.+.+       ..|.+||+..++.. .+........+.
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~  241 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCT  241 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEE
T ss_pred             cCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCcccc
Confidence            00136789999999988766666666788899988 44  334432       36889998765432 232221123455


Q ss_pred             EEeeCCCccEEEEcCCC---CccEEEEEEccCCcccc--c-CceEEEEeCC-CCCEEEEEeC----------------CC
Q 019672          140 AFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHC--E-APLAAIVLSS-NGMYIATASE----------------QG  196 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~~~~~--~-~~i~~~~~s~-dg~~lat~s~----------------dg  196 (337)
                      .+.++|++..|++.+..   ..+.|.+||+.+++...  . .... ++|+| ||+++++++.                ++
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            66777888877766420   12559999998765422  1 2234 89999 9999987652                24


Q ss_pred             cEEEEEEcCCCceeEeeccCCcce---------eEEEEEeecCCCcccEEEEEeC-CCcEEEEecC
Q 019672          197 TIIRVFLVSEATKSYSFRRGTYPS---------TIFSLSFGQSMQFQDILVATSS-SGSLHVFSPG  252 (337)
Q Consensus       197 ~~i~vwd~~~~~~~~~~~~~~~~~---------~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l~  252 (337)
                      . |++||+.+++.. .+.......         .+..++|+|||+   +|+.++. ++...||.++
T Consensus       321 ~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          321 F-LYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD---GVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             E-EEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEE
T ss_pred             c-EEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC---eEEEEecCCCCceEEEEE
Confidence            4 689999887643 332221100         145678999999   7776665 5666777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=8.6e-12  Score=121.73  Aligned_cols=232  Identities=11%  Similarity=-0.039  Sum_probs=146.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--cCCc-eEEEeCCCCcEEEEEeeCC--EE---------EEEEc--cCCCE-EEEEeCCC
Q 019672            6 SSYPVFFVSFNQDNSGFALS--TKDG-FKIFDSSTGRLCYERAVGA--FS---------IVEML--YSSSL-LAIVGAGE   68 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g--~~~g-~~vw~~~~~~~~~~~~~~~--~~---------~~~~~--~~~~~-~~~~~~g~   68 (337)
                      +...|..++|++++-+++..  ..++ ..||....+........+.  +.         ...+.  ++++. +++++.  
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~--   99 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF--   99 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC--
Confidence            45689999999887667766  4454 5888843333333322221  11         22233  56777 776654  


Q ss_pred             CCCCCCceEEEEECC--C-CCEEEEEEc------CCceeEEEEcCCe--EEEEE-C----------CeEEEEECCC----
Q 019672           69 QPSLSPRRLCLFNTT--T-GTALRELNF------LTSILAVRLNKKR--LVIVL-R----------EKTYIYDANT----  122 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~--~-~~~~~~~~~------~~~v~~i~~~~~~--~~v~~-d----------~~i~i~d~~~----  122 (337)
                          .+..|.+|++.  . ++ ...+..      ...+.++.|++++  ++.+. +          ..|++||+.+    
T Consensus       100 ----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A          100 ----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             ----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             ----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence                25678888776  3 44 333332      2357788998874  44444 4          4899999987    


Q ss_pred             --Ceeeeeec-CCCCCceEEEEeeCCCccEEEEcCCCC------ccEEEEEEcc-CC---ccc-----ccCceEEEEeCC
Q 019672          123 --LAILDTID-TVPNLKGLCAFSPSLNACFLAVPASTT------KGSVLVYNVM-EL---HSH-----CEAPLAAIVLSS  184 (337)
Q Consensus       123 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~------dg~v~i~d~~-~~---~~~-----~~~~i~~~~~s~  184 (337)
                        ++. ..+. ..  ......++++||+.+|++.+...      ...|.+||+. ++   ...     +...+..++|+|
T Consensus       175 ~~~~~-~~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp  251 (662)
T 3azo_A          175 DRSAV-RELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP  251 (662)
T ss_dssp             CGGGS-EESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred             cCCce-eEEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence              543 3333 22  23455567788899998766311      1589999998 45   221     136789999999


Q ss_pred             CCCEEEEEeCCCc-EEEEEEcCCCceeEeeccCCcce-------eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          185 NGMYIATASEQGT-IIRVFLVSEATKSYSFRRGTYPS-------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       185 dg~~lat~s~dg~-~i~vwd~~~~~~~~~~~~~~~~~-------~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ||+++++++.+|. .|.+||+.+++..... .+....       .+.+++|+|+++   ++++++. ++++||.++
T Consensus       252 dg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          252 DGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFAPLANGL---IAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             TSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEEECTTSC---EEEEEBS-SSCEEEEEE
T ss_pred             CCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccCccccccCceEeEeCCCE---EEEEEEc-CccEEEEEE
Confidence            9998888888873 1456676677654322 221111       046789999999   9999998 999999554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.46  E-value=1.1e-09  Score=95.18  Aligned_cols=227  Identities=4%  Similarity=0.012  Sum_probs=147.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEE-EEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCY-ERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .....+.++.++++|+.+++... +++.+||.. ++... ...  ......+.+..+.+.. ++..      .++.|..|
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~i~~~   83 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVW-FTEN------AANKIGRI   83 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEE-EEET------TTTEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEE-EeCC------CCCeEEEE
Confidence            34567999999999998776653 568999988 55432 211  1233444444444433 3332      36789999


Q ss_pred             ECCCCCEEEEEEc---CCceeEEEEcCC-eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNF---LTSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~---~~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      |.. ++ ...+..   ...+.++.++++ .+.++.  ++.|.+||. +++.. .+...........+..++++.+.++..
T Consensus        84 ~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           84 TKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             CTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeC
Confidence            986 44 333432   236788989865 455555  568999998 55433 222222223456667777776666554


Q ss_pred             CCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          155 STTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                        .++.|..||. +++...      ...+.+++++++|++.++...++. |.+||. +++.. .+........+.+++++
T Consensus       160 --~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~  233 (299)
T 2z2n_A          160 --QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAG  233 (299)
T ss_dssp             --TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEEC
T ss_pred             --CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEEC
Confidence              3678999998 544321      155889999999998777666666 689998 66643 23222223458899999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecC
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ++|+   ++++...++.|.+||..
T Consensus       234 ~~g~---l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          234 AGID---LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             STTC---EEEEETTTTEEEEEETT
T ss_pred             CCCC---EEEeccCCceEEEECCC
Confidence            9998   77777678899999973

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=1.7e-11  Score=105.67  Aligned_cols=229  Identities=7%  Similarity=-0.030  Sum_probs=142.7

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            9 PVFFVSFNQDNSGFA-LSTK-DGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         9 ~v~~~~fs~dg~~la-~g~~-~g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      ...+++++++|++++ +... +++.+|+..+.........  .....+.+..+.+  ++++.      .++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~--l~v~~------~~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT--VYVTD------FNNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC--EEEEE------TTTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC--EEEEc------CCCEEEEEeCCC
Confidence            677899999999766 4343 4578898766543221111  1223344444444  33443      157999999876


Q ss_pred             CCEEEEEEcC--CceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           85 GTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        85 ~~~~~~~~~~--~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      +... .+...  ..+.++.+++++ ++++.  ++.|.+|+..+..........  .....++..++++.++++..  .++
T Consensus        97 ~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~--~~~  171 (270)
T 1rwi_B           97 NNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG--LNDPDGVAVDNSGNVYVTDT--DNN  171 (270)
T ss_dssp             SCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS--CCSCCCEEECTTCCEEEEEG--GGT
T ss_pred             ceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc--CCCceeEEEeCCCCEEEEEC--CCC
Confidence            5432 23222  467889998664 55554  578999987654332221111  11223445556666555543  368


Q ss_pred             EEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          160 SVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                      .|.+||.........     ..+.+++++++|.++++...++. |.+||........ +... ....+.+++++|+|+  
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~~-~~~~p~~i~~~~~g~--  246 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPFT-GLNTPLAVAVDSDRT--  246 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCCC-SCSCEEEEEECTTCC--
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-eccC-CCCCceeEEECCCCC--
Confidence            899999876543221     56899999999988887777777 5899986654332 2211 123578999999999  


Q ss_pred             cEEEEEeCCCcEEEEecCCCcc
Q 019672          235 DILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~  256 (337)
                       ++++...+++|++|++...+.
T Consensus       247 -l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          247 -VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -EEEEEGGGTEEEEECCCGGGS
T ss_pred             -EEEEECCCCEEEEEcCCCccc
Confidence             899999999999999876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=3.9e-11  Score=104.55  Aligned_cols=172  Identities=13%  Similarity=0.051  Sum_probs=129.6

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .++.|.+||.++|+.+.++..+.  .+.++.+.+++.+++. ++.|..||. +++.+.++..+. ...+.+..+.+++.+
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~-~~~~~~~~~~~dG~~   90 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPA-GCEMQTARILPDGNA   90 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCT-TCEEEEEEECTTSCE
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCC-CccccccEECCCCCE
Confidence            58999999999999999988764  5788888777544434 789999998 888988887642 224556677788888


Q ss_pred             EEEcCCCCccEEEEEEccCCccccc-----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHCE-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~~-----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      +++.+. .++.|..+|. +++.+.+           .+...+++.++|+++++.+.++. |..||.+ |+.+.++..+  
T Consensus        91 lv~~~~-~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~-G~~~w~~~~~--  164 (276)
T 3no2_A           91 LVAWCG-HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN-GQLLNSVKLS--  164 (276)
T ss_dssp             EEEEES-TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT-SCEEEEEECS--
T ss_pred             EEEecC-CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC-CCEEEEEECC--
Confidence            876542 1566777775 3433211           24556778999999999999987 5899998 9999988653  


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                       ..++++.+.++|+   ++++++.++.|..||.++++.
T Consensus       165 -~~~~~~~~~~~g~---~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          165 -GTPFSSAFLDNGD---CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             -SCCCEEEECTTSC---EEEECBTTSEEEEECTTTCCE
T ss_pred             -CCccceeEcCCCC---EEEEeCCCCeEEEEeCcCCcE
Confidence             2345678889998   898888888999999876654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=7.8e-11  Score=103.23  Aligned_cols=214  Identities=10%  Similarity=-0.058  Sum_probs=136.0

Q ss_pred             CCeEEEEEcCCCC-EEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            8 YPVFFVSFNQDNS-GFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         8 ~~v~~~~fs~dg~-~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .-..++.|+|+|+ +++++..+ ++.+|+.+++...+.........+.+..+.++++. ..      .++.|.+||.+++
T Consensus        28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~-~~------~~~~i~~~d~~~g  100 (296)
T 3e5z_A           28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIAC-SH------GLRRLERQREPGG  100 (296)
T ss_dssp             SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEE-ET------TTTEEEEECSTTC
T ss_pred             ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEE-ec------CCCeEEEEcCCCC
Confidence            3467899999998 66777654 57999998872222222234455555555554332 22      3689999999888


Q ss_pred             CEEEEEEc-C----CceeEEEEcCCeEEEEE--------------------CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           86 TALRELNF-L----TSILAVRLNKKRLVIVL--------------------REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        86 ~~~~~~~~-~----~~v~~i~~~~~~~~v~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      +....... .    ..+.++.+++++.+.++                    .+.|..++.. ++.. .+...  ......
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~--~~~~~g  176 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRD--RVKPNG  176 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECC--CSSEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecC--CCCCcc
Confidence            75433221 1    24567888877644443                    1356666654 4332 22222  122345


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEcc-CCcc------c--ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVM-ELHS------H--CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~-~~~~------~--~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      ++++|++..+++..  .++.|.+||+. ++..      .  ....+..++++++|++.++.  ++. |.+||.. ++.+.
T Consensus       177 i~~s~dg~~lv~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g~~~~  250 (296)
T 3e5z_A          177 LAFLPSGNLLVSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-GDELG  250 (296)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-SCEEE
T ss_pred             EEECCCCCEEEEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-CCEEE
Confidence            66777887774444  47899999986 3332      1  12446789999999977766  555 6899986 77777


Q ss_pred             eeccCCcceeEEEEEe-ecCCCcccEEEEEeCCC
Q 019672          212 SFRRGTYPSTIFSLSF-GQSMQFQDILVATSSSG  244 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~f-s~dg~~~~~las~s~dg  244 (337)
                      .+...  .. +.+++| +|+++   .|.+++.++
T Consensus       251 ~~~~~--~~-~~~~~f~~~d~~---~L~v~t~~~  278 (296)
T 3e5z_A          251 RVLTP--QT-TSNLCFGGPEGR---TLYMTVSTE  278 (296)
T ss_dssp             EEECS--SC-CCEEEEESTTSC---EEEEEETTE
T ss_pred             EEECC--CC-ceeEEEECCCCC---EEEEEcCCe
Confidence            76533  22 788999 58988   888888774

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=4e-10  Score=102.46  Aligned_cols=228  Identities=13%  Similarity=0.025  Sum_probs=145.8

Q ss_pred             EEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeC---------CEEEEEEccCCCEEEEEeCCCCCC
Q 019672           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .+.|+|||+++.++.           ++.+.+||..+.+.+......         .-..+.+.+++..+.+....    
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----
Confidence            789999999988874           345789999988877654332         12345667777777665431    


Q ss_pred             CCCceEEEEECCCCCEEEE-EEcCCceeEEEEcCCeEEEE--ECCeEEEEECCCCeeeeeec-----CCCCCceE-EEEe
Q 019672           72 LSPRRLCLFNTTTGTALRE-LNFLTSILAVRLNKKRLVIV--LREKTYIYDANTLAILDTID-----TVPNLKGL-CAFS  142 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~v~--~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~-~~~~  142 (337)
                       .+++|.++| ++++.+.+ +..+..+. +.......+++  .|+++.++|. +++......     ....+... ..+.
T Consensus       146 -~~~~v~viD-~t~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          146 -AGPAVGLVV-QGGSSDDQLLSSPTCYH-IHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             -CCCeEEEEE-CCCCEEeEEcCCCceEE-EEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence             257899999 99999888 76655432 22222223332  3889999999 776653332     11111111 1222


Q ss_pred             eCCCccEEEEcCCCCccEEEEEEccCCccc--c---------------cCceEEEEeCCCCCEEEEEeCC----------
Q 019672          143 PSLNACFLAVPASTTKGSVLVYNVMELHSH--C---------------EAPLAAIVLSSNGMYIATASEQ----------  195 (337)
Q Consensus       143 ~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--~---------------~~~i~~~~~s~dg~~lat~s~d----------  195 (337)
                      ..  +..+++..  ..+.+.+.|+.+....  .               ......++++|||++|..+...          
T Consensus       222 ~~--~~~~~~~~--~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~  297 (373)
T 2mad_H          222 NK--SGRIVWPV--YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA  297 (373)
T ss_pred             ec--CCEEEEEc--CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence            22  22333333  2578999998654211  0               0224458899999988776542          


Q ss_pred             CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCccc
Q 019672          196 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQ  257 (337)
Q Consensus       196 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~  257 (337)
                      +. |.++|+.+++.+.++..+.   ...+++|+|||+  ..|.++. .+++|.|+|+.+.+..
T Consensus       298 ~~-V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~--~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          298 KE-VTSVTGLVGQTSSQISLGH---DVDAISVAQDGG--PDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             Ce-EEEEECCCCEEEEEEECCC---CcCeEEECCCCC--eEEEEEcCCCCeEEEEECCCCCEE
Confidence            34 6899999999988886443   367899999997  1455555 5899999999876653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.42  E-value=1.4e-11  Score=120.18  Aligned_cols=242  Identities=12%  Similarity=0.009  Sum_probs=140.5

Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-Ccee---------EEEEc--CC--e-EEEEEC--CeEE
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSIL---------AVRLN--KK--R-LVIVLR--EKTY  116 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~---------~i~~~--~~--~-~~v~~d--~~i~  116 (337)
                      ..++++.++++....   ..+++..||....+.....+..+ ..+.         ...++  |+  . ++.+.+  ..|.
T Consensus        29 ~~~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~  105 (662)
T 3azo_A           29 VGAVGDEVWWVAPRP---AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLY  105 (662)
T ss_dssp             EEEETTEEEEEEEET---TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEE
T ss_pred             eEEcCCeEEEEecCc---ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEE
Confidence            334466666665410   13678999985444444444333 3444         45454  43  4 444443  4677


Q ss_pred             EEECC--C-CeeeeeecCCC---CCceEEEEeeCCCccEEEEcCCCCc----------cEEEEEEccC------Ccc--c
Q 019672          117 IYDAN--T-LAILDTIDTVP---NLKGLCAFSPSLNACFLAVPASTTK----------GSVLVYNVME------LHS--H  172 (337)
Q Consensus       117 i~d~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~d----------g~v~i~d~~~------~~~--~  172 (337)
                      ++++.  . ++ ...+....   +......++++||+..|++.+.  +          ..|.+||+.+      +..  +
T Consensus       106 ~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l  182 (662)
T 3azo_A          106 AFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE--EFTGEGPSDVRRFLAAVPLDGSAAADRSAVREL  182 (662)
T ss_dssp             EECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE--EECSSSTTCEEEEEEEEETTSTTTTCGGGSEES
T ss_pred             EEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEe--cccCCCCCCceeEEEEEECCCCccccCCceeEE
Confidence            77765  2 33 33443321   2345567778889989988763  4          5899999987      432  2


Q ss_pred             c---cCceEEEEeCCCCCEEEEEeCCC-------cEEEEEEcC-CCc--eeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          173 C---EAPLAAIVLSSNGMYIATASEQG-------TIIRVFLVS-EAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       173 ~---~~~i~~~~~s~dg~~lat~s~dg-------~~i~vwd~~-~~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      .   ...+..++|||||++||.++.++       ..|++||+. +|+  ....+..+ +...+.+++|||||+   ++++
T Consensus       183 ~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~---l~~~  258 (662)
T 3azo_A          183 SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGS---LIVA  258 (662)
T ss_dssp             SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSC---EEEE
T ss_pred             EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCe---EEEE
Confidence            2   25678899999999999888653       347999998 572  33334322 234688999999999   8999


Q ss_pred             EeCCCcEEEE--ecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          240 TSSSGSLHVF--SPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       240 ~s~dg~v~iw--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      ++.+++.+||  |++++.........        .....-.|.+...     .+.+.+++..+++++. |..++|.++.+
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~l~~~~--------~~~~~p~w~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~~~d~~  324 (662)
T 3azo_A          259 TDRTGWWNLHRVDPATGAATQLCRRE--------EEFAGPLWTPGMR-----WFAPLANGLIAVVHGK-GAAVLGILDPE  324 (662)
T ss_dssp             ECTTSSCEEEEECTTTCCEEESSCCS--------SBSSCCCCSTTCC-----SEEECTTSCEEEEEBS-SSCEEEEEETT
T ss_pred             ECCCCCeEEEEEECCCCceeeccccc--------ccccCccccccCc-----eEeEeCCCEEEEEEEc-CccEEEEEECC
Confidence            9988855555  44333211100000        0000113443211     1222344456666666 88888888765


Q ss_pred             CC
Q 019672          318 NC  319 (337)
Q Consensus       318 ~~  319 (337)
                      .+
T Consensus       325 ~~  326 (662)
T 3azo_A          325 SG  326 (662)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.42  E-value=8.7e-11  Score=115.81  Aligned_cols=239  Identities=8%  Similarity=-0.015  Sum_probs=152.5

Q ss_pred             CeEEEEEcCCCCEEEEEcC-C-----ceEEEeCCCCcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCC---------C
Q 019672            9 PVFFVSFNQDNSGFALSTK-D-----GFKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPS---------L   72 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~-~-----g~~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~   72 (337)
                      .+..++|||||++||.+.+ +     .+++||+++++.+.. .....+..+.+.+++..+++++....+.         .
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            5889999999999886654 2     369999999976542 2222234467778888888876521100         1


Q ss_pred             CCceEEEEECCCCCEE--EEEEc---CCceeEEEEcCCe--EEEEE------CCeEEEEECCC------Ce-eeeeecCC
Q 019672           73 SPRRLCLFNTTTGTAL--RELNF---LTSILAVRLNKKR--LVIVL------REKTYIYDANT------LA-ILDTIDTV  132 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~--~~~~~---~~~v~~i~~~~~~--~~v~~------d~~i~i~d~~~------~~-~~~~~~~~  132 (337)
                      ....|.+|++.+++..  ..+..   ...+..+.+++++  +++..      +..|++||+.+      +. ....+..+
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence            1345999999887632  22222   2246788888765  44433      35899999976      42 23444433


Q ss_pred             CCCceEEEEeeCCCccEEEEcCCC--CccEEEEEEccCCcc-----c--cc--CceEEEEeCCCCCEEEEEeCCCcE-EE
Q 019672          133 PNLKGLCAFSPSLNACFLAVPAST--TKGSVLVYNVMELHS-----H--CE--APLAAIVLSSNGMYIATASEQGTI-IR  200 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~--~dg~v~i~d~~~~~~-----~--~~--~~i~~~~~s~dg~~lat~s~dg~~-i~  200 (337)
                      .... ...+++  ++..+++.+..  ..+.|.+||+.++..     +  +.  ..+..++|++++.+++++..||.. |+
T Consensus       286 ~~~~-~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          286 FEGE-YDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             SSSC-EEEEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             CCcE-EEEEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            3222 223444  44454443321  145799999987631     1  11  258889999888889999988853 46


Q ss_pred             EEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE-eC---CCcEEEEecCCCc
Q 019672          201 VFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SS---SGSLHVFSPGFAI  255 (337)
Q Consensus       201 vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~-s~---dg~v~iw~l~~~~  255 (337)
                      +||+.+|+.+..+...  ...+..++++|+++   .++.. +.   .++|++||+.+++
T Consensus       363 ~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~---~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          363 LHDLATGALLKIFPLE--VGSVVGYSGQKKDT---EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTTCCEEEEECCC--SSEEEEEECCTTCS---EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCCCCEEEecCCC--CceEEEEecCCCCC---EEEEEEeCCCCCCEEEEEECCCCc
Confidence            7788788877766532  45688899999997   55533 33   3689999997654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.41  E-value=3.4e-10  Score=100.71  Aligned_cols=225  Identities=10%  Similarity=-0.002  Sum_probs=139.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ...+.+++|+++|++++++..+ ++.+||.++++.....  ....+..+.+..+.++++......   ...+.|.+||.+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~---~~~~~i~~~d~~  120 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATEN  120 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTT
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC---CCCceEEEEeCC
Confidence            3457899999999987777765 5899999888764332  223455555555555433322200   012689999998


Q ss_pred             CCCEEEEEE---cCCceeEEEEcCCe-EEEEEC--------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           84 TGTALRELN---FLTSILAVRLNKKR-LVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        84 ~~~~~~~~~---~~~~v~~i~~~~~~-~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      +++....+.   ....+.++.+++++ ++++..        +.|..+|..+++.......   ......+.+++++..++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLW  197 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEE
T ss_pred             CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEE
Confidence            877543332   22368889998765 444432        3566666654443322111   11234566677776554


Q ss_pred             EcCCCCccEEEEEEccC-Cccc--------c--c--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672          152 VPASTTKGSVLVYNVME-LHSH--------C--E--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~-~~~~--------~--~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      ++.. .++.|.+||+.+ +...        .  .  ..+..++++++|++.++...++. |.+||. +++.+..+.....
T Consensus       198 v~~~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~~~~  274 (333)
T 2dg1_A          198 VTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIPGR  274 (333)
T ss_dssp             EEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECTTG
T ss_pred             EEeC-CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEcCCC
Confidence            4432 368999999863 2211        0  1  25788999999998888877776 589998 5676666643211


Q ss_pred             ----ceeEEEEEeecCCCcccEEEEEeCC
Q 019672          219 ----PSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       219 ----~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                          ...+.+++|+||++   .|..++.+
T Consensus       275 ~~g~~~~~~~~~~~~dg~---~L~v~~~~  300 (333)
T 2dg1_A          275 DEGHMLRSTHPQFIPGTN---QLIICSND  300 (333)
T ss_dssp             GGTCSCBCCEEEECTTSC---EEEEEEEC
T ss_pred             ccccccCcceEEECCCCC---EEEEEeCc
Confidence                01478899999987   66655555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.40  E-value=5e-11  Score=108.00  Aligned_cols=265  Identities=11%  Similarity=0.062  Sum_probs=158.4

Q ss_pred             CCCCEEEEEc-------CCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCC---CCCCCCceEEEEECCCCC
Q 019672           17 QDNSGFALST-------KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE---QPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        17 ~dg~~la~g~-------~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~d~~v~iwd~~~~~   86 (337)
                      ++++++.+..       ++.+.+||..+++++.....+....+.+.++...+..+....   ..+..+++|.+||..+++
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            4666665543       335799999999887666544444667777777776654100   000126789999999999


Q ss_pred             EEEEEEcC-------CceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeee-ecCCCCCceEEEEeeCCCccEEEEc
Q 019672           87 ALRELNFL-------TSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        87 ~~~~~~~~-------~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .+.++...       .....+.++++  .++++.   +++|.+||+.+++.+.. +.... ..+ ..+.+++...+++.+
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~-v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWS-VIPQPNRPRSFMTIC  170 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEE-EEECTTSSSEEEEEE
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cce-eEEcCCCCeeEEEEC
Confidence            99888753       24566788765  466654   46899999999988887 65422 111 223333322333333


Q ss_pred             CCCCccEEEEEEccC-Cccc---------c--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeecc----
Q 019672          154 ASTTKGSVLVYNVME-LHSH---------C--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRR----  215 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~-~~~~---------~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~----  215 (337)
                         .||.+.+|++.. ++..         .  ..+ ..+.++|+|..++..+.++. +.++|+..++.  +..+..    
T Consensus       171 ---~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~~~~~~~~~  245 (361)
T 2oiz_A          171 ---GDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDGPWSLLNDE  245 (361)
T ss_dssp             ---TTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEEEEESCCHH
T ss_pred             ---CCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCe-EEEEEecCCCceecccccccCcc
Confidence               378888888754 3221         0  012 13344677888888888887 68999875532  122110    


Q ss_pred             ----CCcceeEEEEEeecCCCcccEEEEEeC-----------CCcEEEEecCCCcccCCCCcccccccccccccceeecc
Q 019672          216 ----GTYPSTIFSLSFGQSMQFQDILVATSS-----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  280 (337)
Q Consensus       216 ----~~~~~~i~~l~fs~dg~~~~~las~s~-----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  280 (337)
                          +..+....-++|+||++   .+.++..           .++|.+||+++.+....           ++-..  .| 
T Consensus       246 ~~~~~~~p~g~~~~a~~~dg~---~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~-----------i~~~~--p~-  308 (361)
T 2oiz_A          246 DKAKNWVPGGYNLVGLHRASG---RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR-----------IPGRD--AL-  308 (361)
T ss_dssp             HHHTTCEECCSSCEEEETTTT---EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE-----------EECTT--CC-
T ss_pred             ccccccccCCeeEEEEecCCC---eEEEEEccCCCcccccCCCceEEEEECCCCcEEEE-----------EecCC--ee-
Confidence                00011111268999988   6665532           35899999887653221           11000  12 


Q ss_pred             cccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          281 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                               .+.+.+++++|++.+. +.+.+|+..
T Consensus       309 ---------~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          309 ---------SMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             ---------EEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             ---------EEEECCCCCEEEEeCC-CeEEEEECC
Confidence                     2233566688988886 999999554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.39  E-value=3.1e-10  Score=102.78  Aligned_cols=230  Identities=12%  Similarity=0.007  Sum_probs=150.5

Q ss_pred             EEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeC---------CEEEEEEccCCCEEEEEeCCCCCC
Q 019672           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .+.++|||+++.++.           .+.+.+||..+++.+......         .-..+.+.+++..+.+....    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----
Confidence            489999999887664           245799999999887766432         12235677777776655421    


Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEE-EECCeEEEEECCC-CeeeeeecCCC----CCceE-EEEee
Q 019672           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVI-VLREKTYIYDANT-LAILDTIDTVP----NLKGL-CAFSP  143 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v-~~d~~i~i~d~~~-~~~~~~~~~~~----~~~~~-~~~~~  143 (337)
                       .++.|.++|+.+++.+.++..+... .+.- ....++. +.|+++.+.++.+ ++.........    .+... ..+. 
T Consensus       158 -~~~~VsVID~~t~~vv~tI~v~g~~-~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-  234 (386)
T 3sjl_D          158 -PAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-  234 (386)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-
T ss_pred             -CCCeEEEEECCCCcEEEEEECCCcc-eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-
Confidence             3689999999999999999776532 2222 2333433 3389999999976 55432111111    11110 1222 


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCcc--ccc---------------CceEEEEeCCCCCEEEEEeCC---------Cc
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHS--HCE---------------APLAAIVLSSNGMYIATASEQ---------GT  197 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~--~~~---------------~~i~~~~~s~dg~~lat~s~d---------g~  197 (337)
                      .+++.++..+.   +|.|.+.|+.+...  ...               .....++++|++++|..+..+         +.
T Consensus       235 ~~dG~~~~vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~  311 (386)
T 3sjl_D          235 QKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  311 (386)
T ss_dssp             TTTTEEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cCCCcEEEEeC---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence            24555544433   68999999865432  111               334568889999988876531         23


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE-EeCCCcEEEEecCCCcc
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA-TSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las-~s~dg~v~iw~l~~~~~  256 (337)
                      .|-+.|+++++.+.++..+   ..+++|+|+||++  ++|.+ ...+++|.|+|..+.+.
T Consensus       312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~--~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEK--PLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEETTTCCEEEEEEEE---EEECEEEECSSSS--CEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEECCCCeEEEEEECC---CCcceEEECCCCC--eEEEEEcCCCCeEEEEECCCCcE
Confidence            4679999999999988654   3688999999995  25555 45689999999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.38  E-value=2.7e-10  Score=99.27  Aligned_cols=219  Identities=7%  Similarity=-0.005  Sum_probs=151.2

Q ss_pred             CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC---CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc
Q 019672           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF   93 (337)
Q Consensus        18 dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~   93 (337)
                      .++.|++++.++ +.+||.++++.+.....+   ....+.+.++.+.++  +.       ++.|..||. +|+.+.++..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~-------~~~V~~~d~-~G~~~W~~~~   73 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SY-------SKGAKMITR-DGRELWNIAA   73 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--EC-------BSEEEEECT-TSCEEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eC-------CCCEEEECC-CCCEEEEEcC
Confidence            346777777766 699999999998877653   345566777777655  33       678999999 8999999887


Q ss_pred             C--CceeEEEEcCCeEEEEE--C--CeEEEEECCCCeeeeeecCCCC---C-ceEEEEeeCCCccEEEEcCCCCccEEEE
Q 019672           94 L--TSILAVRLNKKRLVIVL--R--EKTYIYDANTLAILDTIDTVPN---L-KGLCAFSPSLNACFLAVPASTTKGSVLV  163 (337)
Q Consensus        94 ~--~~v~~i~~~~~~~~v~~--d--~~i~i~d~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~la~~~~~~dg~v~i  163 (337)
                      +  ..+.++.+.+++.+++.  +  +.+..+|. +++.+.++.....   + .....+++.+++.++++..  .++.|..
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~--~~~~v~~  150 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF--ATSEVRE  150 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET--TTTEEEE
T ss_pred             CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec--CCCEEEE
Confidence            5  36777777666543333  3  36666674 6777666642211   0 0111224566777888766  4899999


Q ss_pred             EEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC----cceeEEEEEeecCCCccc
Q 019672          164 YNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT----YPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       164 ~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~----~~~~i~~l~fs~dg~~~~  235 (337)
                      ||.. ++.+.+    ..+.++.+.++|+.+++++.+++ |..+|..+|+.+.++....    .-..+..++..++|.   
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~---  225 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG---  225 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC---
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC---
Confidence            9998 776543    45677888999999998888877 5799999999998885321    112378889999998   


Q ss_pred             EEEEEeCC--------CcEEEEecCCC
Q 019672          236 ILVATSSS--------GSLHVFSPGFA  254 (337)
Q Consensus       236 ~las~s~d--------g~v~iw~l~~~  254 (337)
                      ++++.+.-        +..+++++...
T Consensus       226 i~v~~~~g~~~~~~~~~~~~~~~~~~~  252 (276)
T 3no2_A          226 LYICNWQGHDREAGKGKHPQLVEIDSE  252 (276)
T ss_dssp             EEEEEECTTCTTGGGSCCCSEEEECTT
T ss_pred             EEEEeccCccccccccCCceEEEECCC
Confidence            77776421        24567777543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2e-09  Score=94.54  Aligned_cols=227  Identities=11%  Similarity=0.038  Sum_probs=140.9

Q ss_pred             CeEEEEEcCCCCEEEE--------EcCCceEEEeCCCCcEEEEE------eeCCEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQDNSGFAL--------STKDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~--------g~~~g~~vw~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ...+++|+++|+.+++        ..++++.+||..+++...-.      .......+.+..+...+.+++.       .
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~   91 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------R   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------T
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------C
Confidence            4578999999998777        34456899998877654221      1123333344333123333333       3


Q ss_pred             ceEEEEECCCCCEEEE-EEcC-----CceeEEEEcCCe-EEEEEC-----------------CeEEEEECCCCeeeeeec
Q 019672           75 RRLCLFNTTTGTALRE-LNFL-----TSILAVRLNKKR-LVIVLR-----------------EKTYIYDANTLAILDTID  130 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~-~~~~-----~~v~~i~~~~~~-~~v~~d-----------------~~i~i~d~~~~~~~~~~~  130 (337)
                      +.|.+||.. ++.... ....     ..+.++.+++++ +.++..                 +.|..||.. ++......
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            489999998 765432 2111     247788898765 445442                 357777765 44332222


Q ss_pred             CCCCCceEEEEeeC----CCccEEEEcCCCCccEEEEEEcc-CCcc-----ccc------CceEEEEeCCCCCEEEEEeC
Q 019672          131 TVPNLKGLCAFSPS----LNACFLAVPASTTKGSVLVYNVM-ELHS-----HCE------APLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       131 ~~~~~~~~~~~~~~----~~~~~la~~~~~~dg~v~i~d~~-~~~~-----~~~------~~i~~~~~s~dg~~lat~s~  194 (337)
                      ....   ...+..+    +++..+.++.. .++.|.+||+. +++.     ...      ..+..++++++|++.++...
T Consensus       170 ~~~~---~~~i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          170 AFQF---PNGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EESS---EEEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             CCCC---cceEEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            1111   2333445    77755544432 36889999976 3321     111      34788999999998888777


Q ss_pred             CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE-eCCCcEEEEecCCC
Q 019672          195 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFA  254 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~-s~dg~v~iw~l~~~  254 (337)
                      ++. |.+||..+++.+..+..+  ...+.+++|+|+|+   .|.++ ..++.|..|+++..
T Consensus       246 ~~~-i~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~---~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          246 SSH-IEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTK---TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTE-EEEECTTCBSCSEEEECS--SSCEEEEEECTTSS---EEEEEETTTTEEEEEECSSC
T ss_pred             CCE-EEEEcCCCCcEeEEEeCC--CCCceeEEECCCCC---EEEEEeCCCCeEEEEeCCCC
Confidence            776 589999877766655432  24588999999998   66555 45688999998653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.34  E-value=5.2e-10  Score=99.92  Aligned_cols=218  Identities=10%  Similarity=0.080  Sum_probs=136.8

Q ss_pred             CCeEEEEEcCCCCEEEEEc----------CCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            8 YPVFFVSFNQDNSGFALST----------KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~----------~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      ..+..++|  ||++++...          ...+.+||+++++...-   ..+....+.+++..+++++....  .....|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~--~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEE--KKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETT--TTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccC--CCcceE
Confidence            45778888  999877542          12257889988764322   34556678888888888764200  012358


Q ss_pred             EEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-C---------------------------CeEEEEECCCCeeee
Q 019672           78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-R---------------------------EKTYIYDANTLAILD  127 (337)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d---------------------------~~i~i~d~~~~~~~~  127 (337)
                      .+||+.+++.......+. +..+.|+++.  ++++. +                           ..|++||+.+++.+.
T Consensus        88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            888998887665555555 8889998764  55443 2                           469999998887644


Q ss_pred             eecCCCCCceEEEEeeCCCccEEEEcCCCC-------ccEEEEEEccCCccc--cc-CceEEEEeCCCCCEEEEEeCCC-
Q 019672          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTT-------KGSVLVYNVMELHSH--CE-APLAAIVLSSNGMYIATASEQG-  196 (337)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------dg~v~i~d~~~~~~~--~~-~~i~~~~~s~dg~~lat~s~dg-  196 (337)
                      .+.. +   .+..+.++|++ +++++....       ...|.++|  +++..  .. ..+..  ++|||++|+.++.++ 
T Consensus       167 ~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~--~spdg~~l~~~~~~~~  237 (347)
T 2gop_A          167 EFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEKVSFYA--VDSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEEESEEE--EEECSSCEEEEECCSS
T ss_pred             eecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccCcceee--ECCCCCEEEEEEcccc
Confidence            5443 2   23344556777 555553211       12455555  33321  11 33333  499999998887553 


Q ss_pred             ------cEEEEEEcCCCceeEeeccCCcceeEEE-EEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          197 ------TIIRVFLVSEATKSYSFRRGTYPSTIFS-LSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       197 ------~~i~vwd~~~~~~~~~~~~~~~~~~i~~-l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                            ..|.+||  +++.. .+..+ +...+.. +.|+ |+    ++++++.++.++|| +.
T Consensus       238 ~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~~~~~~s-dg----~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GKEVM-GILDE-VDRGVGQAKIKD-GK----VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SCCCSSCEEEEEC--SSCEE-ESSTT-CCSEEEEEEEET-TE----EEEEEEETTEEEEE-EE
T ss_pred             CCccccceEEEEC--CCceE-ecccc-CCcccCCccEEc-Cc----EEEEEecCCcEEEE-Ec
Confidence                  2356777  55543 33322 2445775 8999 76    68899999999999 87

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.34  E-value=8.4e-10  Score=105.65  Aligned_cols=172  Identities=13%  Similarity=0.076  Sum_probs=126.5

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE-CCeEEEEECC--CCeeeeeecCCCCCceEEEEeeC---
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL-REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPS---  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~---  144 (337)
                      .+++|.++|..+++.+.++.....+..+.++++  +++++. ++.|.+||+.  +++.+.++....++   ..+.++   
T Consensus       175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P---~~ia~s~~~  251 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA---RSIETSKME  251 (567)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE---EEEEECCST
T ss_pred             CCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC---ceeEEcccc
Confidence            589999999999999999988777778999876  455555 7899999995  78888888764443   344556   


Q ss_pred             -CCccEEEEcCCCCccEEEEEEccCCccccc----------------CceEEEEeCCCCCEEEEE-eCCCcEEEEEEcCC
Q 019672          145 -LNACFLAVPASTTKGSVLVYNVMELHSHCE----------------APLAAIVLSSNGMYIATA-SEQGTIIRVFLVSE  206 (337)
Q Consensus       145 -~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----------------~~i~~~~~s~dg~~lat~-s~dg~~i~vwd~~~  206 (337)
                       |++.+++++.. .+++|.|+|..+.+.+..                ..+..+.+++++..++.. .++|. |.++|..+
T Consensus       252 ~pDGk~l~v~n~-~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~-v~~vd~~~  329 (567)
T 1qks_A          252 GWEDKYAIAGAY-WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK-ILLVDYTD  329 (567)
T ss_dssp             TCTTTEEEEEEE-ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE-EEEEETTC
T ss_pred             CCCCCEEEEEEc-cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe-EEEEecCC
Confidence             57888887775 579999999888765432                146788899987755544 45565 68999877


Q ss_pred             CceeE--eeccCCcceeEEEEEeecCCCcccEEEEE-eCCCcEEEEecCCCc
Q 019672          207 ATKSY--SFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAI  255 (337)
Q Consensus       207 ~~~~~--~~~~~~~~~~i~~l~fs~dg~~~~~las~-s~dg~v~iw~l~~~~  255 (337)
                      .+.+.  .+..+   .....+.|+|||+   +++++ ..+++|.++|+++.+
T Consensus       330 ~~~~~v~~i~~~---~~~~d~~~~pdgr---~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          330 LNNLKTTEISAE---RFLHDGGLDGSHR---YFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             SSEEEEEEEECC---SSEEEEEECTTSC---EEEEEEGGGTEEEEEETTTTE
T ss_pred             Cccceeeeeecc---ccccCceECCCCC---EEEEEeCCCCeEEEEECCCCc
Confidence            64332  22221   2367889999999   66554 467899999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.30  E-value=8.6e-11  Score=115.60  Aligned_cols=237  Identities=9%  Similarity=0.006  Sum_probs=144.4

Q ss_pred             CCeEEEEEcCCCCEEEEEc-----CC-ceEEEeCCCCcEE-EEEeeCCE--EEEEEccCCCEEEEEeCCCCC------CC
Q 019672            8 YPVFFVSFNQDNSGFALST-----KD-GFKIFDSSTGRLC-YERAVGAF--SIVEMLYSSSLLAIVGAGEQP------SL   72 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~-----~~-g~~vw~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~------~~   72 (337)
                      ..+.+++|||||++||.+.     ++ .+++||+++++.+ .. ....+  ..+.+.+++..+++++.....      ..
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            4688999999999988443     22 3699999998765 21 11222  446777888888887652100      00


Q ss_pred             CCceEEEEECCCCCE--EEEEEc---CCceeEEEEcCCe--EEEEE-CC----eEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           73 SPRRLCLFNTTTGTA--LRELNF---LTSILAVRLNKKR--LVIVL-RE----KTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~--~~~~~~---~~~v~~i~~~~~~--~~v~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      ....|++|++.+++.  ...+..   ...+..+.+++++  +++.. ++    .|+++|..+++. ..+..+... ....
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~-~~~~  277 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGA-KYEV  277 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSC-CEEE
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCc-eEEE
Confidence            123499999998762  222222   2367788898875  44433 44    677777655543 233222221 1222


Q ss_pred             EeeCCCccEEEEcCCC-CccEEEEEEccCCcc-----c--c--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCce
Q 019672          141 FSPSLNACFLAVPAST-TKGSVLVYNVMELHS-----H--C--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATK  209 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~-----~--~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~~  209 (337)
                      +.+  ++.+++..... .++.|.+||+.++..     +  +  ...+..++++ ++.++++...||. .+||.+. +++.
T Consensus       278 ~~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~g~~  353 (695)
T 2bkl_A          278 HAW--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLKGKP  353 (695)
T ss_dssp             EEE--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETTCCE
T ss_pred             Eec--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCCCCe
Confidence            222  33344443311 258899999977542     1  1  1457888888 7788899999986 5787654 4655


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEe----CCCcEEEEecCCCc
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS----SSGSLHVFSPGFAI  255 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s----~dg~v~iw~l~~~~  255 (337)
                      +..+.. .....+..++++||++   .|+...    ..++|++||+.+++
T Consensus       354 ~~~l~~-~~~~~v~~~~~s~d~~---~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          354 VRTVQL-PGVGAASNLMGLEDLD---DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEECCC-SSSSEECCCBSCTTCS---EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             eEEecC-CCCeEEEEeecCCCCC---EEEEEEcCCCCCCEEEEEECCCCc
Confidence            555532 2245678889999997   665332    23689999997654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.28  E-value=3.8e-09  Score=92.35  Aligned_cols=187  Identities=9%  Similarity=0.017  Sum_probs=118.8

Q ss_pred             EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCe-EEEEE--CCeEEEEECCCCe
Q 019672           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR-LVIVL--REKTYIYDANTLA  124 (337)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~  124 (337)
                      .....+..+.+.+++++.      .++.|..||..++  ...+..+ ..+.++++++++ ++++.  ++.|.+||..+++
T Consensus        30 ~eg~~~d~~g~~l~~~~~------~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDV------RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEG------GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             ccCCeEeCCCCEEEEEeC------CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            344555566664555554      3789999999887  4455443 468899998765 44454  4689999997776


Q ss_pred             eeeeecCCCCC--ceEEEEeeCCCccEEEEcCC---------------CCccEEEEEEccCCccc----ccCceEEEEeC
Q 019672          125 ILDTIDTVPNL--KGLCAFSPSLNACFLAVPAS---------------TTKGSVLVYNVMELHSH----CEAPLAAIVLS  183 (337)
Q Consensus       125 ~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~---------------~~dg~v~i~d~~~~~~~----~~~~i~~~~~s  183 (337)
                      ...........  .....+..++++.++++...               ...+.|..+|.. ++..    .....+.++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEEC
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEEC
Confidence            54332211110  11234566777877775210               012456666654 3221    12567899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcC-CCce---eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          184 SNGMYIATASEQGTIIRVFLVS-EATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       184 ~dg~~lat~s~dg~~i~vwd~~-~~~~---~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |||+.|++.+.++. |++||+. +|+.   ...+ .. ....+.+|+++++|+   ++++.  ++.|.+|+.+
T Consensus       181 ~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~~-~~~~p~~i~~d~~G~---l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          181 PSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-TV-EPGKTDGLRVDAGGL---IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             TTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-CC-SSSCCCSEEEBTTSC---EEEEE--TTEEEEECTT
T ss_pred             CCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-eC-CCCCCCeEEECCCCC---EEEEc--CCeEEEECCC
Confidence            99999877777776 6899997 5554   2333 21 233456799999998   66666  7889999975

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=3.1e-09  Score=104.74  Aligned_cols=232  Identities=6%  Similarity=-0.060  Sum_probs=139.5

Q ss_pred             CCCCEEEEEcCC-c--e-EEEe--CCCCcE--EEEEe----eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672           17 QDNSGFALSTKD-G--F-KIFD--SSTGRL--CYERA----VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus        17 ~dg~~la~g~~~-g--~-~vw~--~~~~~~--~~~~~----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      |||++++-...+ +  . .+|-  ..+++.  +....    .+  .+....+++++..+++.....  +....+|++||+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~--G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS--GSDWVTIKFMKV  158 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET--TCSCEEEEEEET
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC--CCceEEEEEEEC
Confidence            889887654322 2  1 4554  334432  22211    12  244566777888888775410  012248999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCe----------------EEEEECCCCeee--eeecCCCCCceEEEE
Q 019672           83 TTGTALRELNFLTSILAVRLNKKR--LVIVL-REK----------------TYIYDANTLAIL--DTIDTVPNLKGLCAF  141 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~----------------i~i~d~~~~~~~--~~~~~~~~~~~~~~~  141 (337)
                      .+++.+........+..+.|++++  ++.+. ++.                |++|++.+++..  ..+....++.....+
T Consensus       159 ~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          159 DGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             TTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence            999876533222346678898764  55544 433                999999877522  222322234445667


Q ss_pred             eeCCCccEEEEcCCCC---ccEEEEEEccC------Cc-cc-----ccCceEEEEeCCCCCEEEEEeCCCc---EEEEEE
Q 019672          142 SPSLNACFLAVPASTT---KGSVLVYNVME------LH-SH-----CEAPLAAIVLSSNGMYIATASEQGT---IIRVFL  203 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~---dg~v~i~d~~~------~~-~~-----~~~~i~~~~~s~dg~~lat~s~dg~---~i~vwd  203 (337)
                      .++|++.+|++.....   +..|.+||+.+      +. ..     +...+.. .|+|+|+.|+..+.++.   .|.+||
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            7788888888664211   56899999976      42 11     1133443 58899998887766432   257899


Q ss_pred             cCCCc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE--EEEecCCC
Q 019672          204 VSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL--HVFSPGFA  254 (337)
Q Consensus       204 ~~~~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v--~iw~l~~~  254 (337)
                      +.+++  ....+..+.....+.+++|++++.   ++++...++..  ++|++.++
T Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---lv~~~~~~g~~~l~~~~~~~g  369 (710)
T 2xdw_A          318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNF---LVLCYLHDVKNTLQLHDLATG  369 (710)
T ss_dssp             TTSCCGGGCEEEECCCSSCEEEEEEEETTTE---EEEEEEETTEEEEEEEETTTC
T ss_pred             CCCCCcccceeccCCCCCCeEEEEEEEcCCE---EEEEEEECCEEEEEEEECCCC
Confidence            98874  223443332223688899998877   88888889864  55565443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=3.5e-10  Score=102.73  Aligned_cols=174  Identities=10%  Similarity=0.146  Sum_probs=120.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC-----------EEEEEEcCCceeEEEEcCCeEEEEECCeEE
Q 019672           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----------ALRELNFLTSILAVRLNKKRLVIVLREKTY  116 (337)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~v~~d~~i~  116 (337)
                      .+..+++......++.++.        ..+++|+++..+           .......+. |..++|+.+.++++.++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~--------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG--------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET--------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCC--------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEE
Confidence            3555666666666554443        478889854322           234556677 99999977778888799999


Q ss_pred             EEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-ccCceEEEEeCCCCCEEEEEeCC
Q 019672          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEAPLAAIVLSSNGMYIATASEQ  195 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-~~~~i~~~~~s~dg~~lat~s~d  195 (337)
                      +||+++......+..+.  ..+..+.+.+.+  +|+..  .||.|.+||+.++... ....|+|++|||+|  ++.|..|
T Consensus       110 v~dv~sl~~~~~~~~~~--~~v~~i~~~~p~--~av~~--~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFE--KPVFQLKNVNNT--LVILN--SVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EEESSSTTCEEEEEECS--SCEEEEEECSSE--EEEEE--TTSEEEEEETTTCCEEEEEESEEEEEECSSE--EEEEETT
T ss_pred             EEEchhhhccCccceee--cceeeEEecCCC--EEEEE--CCCCEEEEEccCCccccccCCceEEEEcCCc--eEEEEcC
Confidence            99997765433332222  235555555443  55554  4899999999866543 33789999999999  6889999


Q ss_pred             CcEEEEEEcCCCce--eEeecc----C---CcceeEEEEEeecCCCcccEEEEEeC
Q 019672          196 GTIIRVFLVSEATK--SYSFRR----G---TYPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       196 g~~i~vwd~~~~~~--~~~~~~----~---~~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                      |+ +++|+...++.  ..++..    +   .+...|.+|.|.++++   +|++-..
T Consensus       182 g~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~---flv~y~~  233 (388)
T 1xip_A          182 RS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD---FLAVFGN  233 (388)
T ss_dssp             SC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE---EEEEEEC
T ss_pred             Cc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe---EEEEEcC
Confidence            98 68998877764  455521    0   1346799999999998   8887443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.27  E-value=1.1e-07  Score=82.45  Aligned_cols=226  Identities=9%  Similarity=0.038  Sum_probs=144.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEE-EEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCY-ERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ......++.++++|+.+++... +++.+||.. ++... ....  .....+.+..+.+.. ++..      .++.|..+|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~v~~~d   89 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIW-FTEN------GANKIGKLS   89 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEE-EEET------TTTEEEEEC
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEE-EEec------CCCeEEEEC
Confidence            3567899999999998777654 568999987 65432 2211  233334444344433 3332      367899999


Q ss_pred             CCCCCEEEEEEcC---CceeEEEEcCC-eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGTALRELNFL---TSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~~~---~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      .. ++. ..+..+   ..+.++.++++ .+.++.  ++.|..||.. ++.. .+..........++..++++.+.++.. 
T Consensus        90 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~-  164 (300)
T 2qc5_A           90 KK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTEN-  164 (300)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEET-
T ss_pred             CC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEec-
Confidence            88 654 334332   46788888764 455555  5689999987 5443 222221223456667777777555543 


Q ss_pred             CCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          156 TTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                       .++.|..+|. +++...      ...+..++++++|++.++....+. |.+||. +++... +........+.++++++
T Consensus       165 -~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          165 -QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGK  239 (300)
T ss_dssp             -TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred             -CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECC
Confidence             3678999988 433221      146889999999987777666665 578998 555433 21111234578999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +|+   ++++...++.|..|+..
T Consensus       240 ~g~---l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          240 NSE---IWFTEWGANQIGRITND  259 (300)
T ss_dssp             TTC---EEEEETTTTEEEEECTT
T ss_pred             CCC---EEEeccCCCeEEEECCC
Confidence            998   77777777899999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.26  E-value=2.8e-08  Score=86.25  Aligned_cols=224  Identities=9%  Similarity=-0.006  Sum_probs=139.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcE-EEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            7 SYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRL-CYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ...+.+++++++|..+++... +++..|+.+ ++. .+...  ......+.+..+..+ .++..      .++.|..||.
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~------~~~~i~~~d~  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDI-WFTEM------NGNRIGRITD  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCE-EEEET------TTTEEEEECT
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCE-EEEec------CCceEEEECC
Confidence            467899999999998777764 457889876 433 22221  122333344333333 23332      3678999998


Q ss_pred             CCCCEEEEEEc---CCceeEEEEcCC-eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           83 TTGTALRELNF---LTSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        83 ~~~~~~~~~~~---~~~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                       +++.. .+..   ...+.++.++++ .+.++.  ++.|..||. +++... +..........++..++++.+.++..  
T Consensus       128 -~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~--  201 (299)
T 2z2n_A          128 -DGKIR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEI--  201 (299)
T ss_dssp             -TCCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET--
T ss_pred             -CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEcc--
Confidence             55543 3322   235788888866 455555  568999998 655433 22222223455667777777665544  


Q ss_pred             CccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          157 TKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      .++.|.+||. +++...      ...+.+++++++|++.++...++. |..||. +++ +..+........+.++++ ++
T Consensus       202 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~  276 (299)
T 2z2n_A          202 IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNI-IEEYPIQIKSAEPHGICF-DG  276 (299)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTE-EEEEECSSSSCCEEEEEE-CS
T ss_pred             CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCc-eEEEeCCCCCCccceEEe-cC
Confidence            3678999998 554321      156899999999997776656666 579998 454 333322222345889999 99


Q ss_pred             CCcccEEEEEeCCCcEEEEecCC
Q 019672          231 MQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |.   ++++.+ .+.|..++.++
T Consensus       277 g~---l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          277 ET---IWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             SC---EEEEET-TTEEEEEEEC-
T ss_pred             CC---EEEEec-CCcEEEEEcCc
Confidence            98   666655 56677777654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.25  E-value=1.1e-08  Score=94.25  Aligned_cols=234  Identities=9%  Similarity=0.029  Sum_probs=145.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672            8 YPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      ....+++|+++|+++++...+ .+++||.+++++...........+.+..+.+.+..+...     ....|.+||...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~-----~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE-----GTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSS-----TTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecC-----CCceEEEEEcCCCc
Confidence            457899999999977777654 479999988776544332222226666666766555441     12289999987766


Q ss_pred             EEEEE----E-cCCceeEEEEcC-C-eEEEEE-CCeEEEEECCCCeeeee--e-cCCCCCceEE-EEeeCCC-ccEEEEc
Q 019672           87 ALREL----N-FLTSILAVRLNK-K-RLVIVL-REKTYIYDANTLAILDT--I-DTVPNLKGLC-AFSPSLN-ACFLAVP  153 (337)
Q Consensus        87 ~~~~~----~-~~~~v~~i~~~~-~-~~~v~~-d~~i~i~d~~~~~~~~~--~-~~~~~~~~~~-~~~~~~~-~~~la~~  153 (337)
                      ....+    . ....+.++++++ + .++++. ++.|+.||..++.....  . ........-. .++++|+ +.++++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            54444    2 223567788887 4 445533 56899999977643211  0 1111101101 4455553 4444443


Q ss_pred             CCCCccEEEEEEccCCcccc------------------cCceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeec
Q 019672          154 ASTTKGSVLVYNVMELHSHC------------------EAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~------------------~~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      .  ..+.|+.||........                  -.....++++|+|+++++-+ ..++ |+.||+.+|+......
T Consensus       286 ~--~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          286 Q--NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVSTVAG  362 (409)
T ss_dssp             T--TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEEEEEE
T ss_pred             C--CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEEEEeC
Confidence            3  47889999875421100                  13478999999999777766 6665 7999988886432221


Q ss_pred             cCC------------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          215 RGT------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       215 ~~~------------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+.            .-.....|+++|+|.   ++++-..++.|+.++++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~---lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGEGG---YWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSSSE---EEEEESTTCEEEEEEEC
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCCCC---EEEEECCCCeEEEEEeC
Confidence            100            012378999999988   88888888999888763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.24  E-value=4.1e-09  Score=104.40  Aligned_cols=236  Identities=10%  Similarity=-0.019  Sum_probs=144.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCC------ceEEEeCCCCcEEEEEeeCCE--EEEEEccCCCEEEEEeCCCCC-------CCC
Q 019672            9 PVFFVSFNQDNSGFALSTKD------GFKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQP-------SLS   73 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~------g~~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~-------~~~   73 (337)
                      .+..++|||||++||.+.+.      .+++||+++++.+... ....  ..+.+.++ +.+++++.....       ...
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            57889999999998876543      3689999999875431 1122  23567777 778777642110       001


Q ss_pred             CceEEEEECCCCCE--EEEEEcCC---ceeEEEEcCCe--EEEEE-CC-----eEEEEECCCC--eeeeeecCCCCCceE
Q 019672           74 PRRLCLFNTTTGTA--LRELNFLT---SILAVRLNKKR--LVIVL-RE-----KTYIYDANTL--AILDTIDTVPNLKGL  138 (337)
Q Consensus        74 d~~v~iwd~~~~~~--~~~~~~~~---~v~~i~~~~~~--~~v~~-d~-----~i~i~d~~~~--~~~~~~~~~~~~~~~  138 (337)
                      ...|.+|++.+++.  ...+....   .+..+.+++++  +++.. ++     .|++||+.++  +....+..+... ..
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~  320 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QW  320 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eE
Confidence            44699999987752  22222222   37788898876  44433 32     8999999776  313444332222 12


Q ss_pred             EEEeeCCCccEEEEcCCC--CccEEEEEEccCCc-c---c---ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-CCc
Q 019672          139 CAFSPSLNACFLAVPAST--TKGSVLVYNVMELH-S---H---CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EAT  208 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~--~dg~v~i~d~~~~~-~---~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-~~~  208 (337)
                      ..+.  +++..+++.+..  ..+.|.+||+.+.. .   +   +...+..++++ ++.++++...||. .+||.+. +++
T Consensus       321 ~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~g~  396 (741)
T 1yr2_A          321 DFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLDGK  396 (741)
T ss_dssp             EEEE--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETTSC
T ss_pred             EEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCCCC
Confidence            2233  344455544321  25679999987742 1   1   11456778887 6678888888886 4677554 466


Q ss_pred             eeEeeccCCcceeEEEEEeecCCCcccEEE-EEe---CCCcEEEEecCCCc
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILV-ATS---SSGSLHVFSPGFAI  255 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~la-s~s---~dg~v~iw~l~~~~  255 (337)
                      .+..+... ....+..++++||++   .|+ +.+   ..++|++||+.+++
T Consensus       397 ~~~~l~~~-~~~~v~~~~~s~d~~---~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          397 PAGAVSLP-GIGSASGLSGRPGDR---HAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEECBCS-SSCEEEEEECCBTCS---CEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ceeeccCC-CCeEEEEeecCCCCC---EEEEEEcCCCCCCEEEEEECCCCc
Confidence            55655421 245688999999987   555 333   23789999987654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=3.9e-09  Score=95.81  Aligned_cols=222  Identities=13%  Similarity=0.109  Sum_probs=143.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc-----------EEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCc
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR-----------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (337)
                      ..+++.+++++...++++|+.+++++|+++..+           .........+..+.+  +.+.+++. .       ++
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~-------~~  106 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-T-------RN  106 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-E-------SS
T ss_pred             cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-c-------CC
Confidence            346999999999999999999999999865433           112222334665665  67777665 3       57


Q ss_pred             eEEEEECCCCCEEEE-EEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           76 RLCLFNTTTGTALRE-LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .|++||+.+...... ..+..++.++.+.+..++++. ||.+.+||+.+++... +     ...+.+++++|++  ++.+
T Consensus       107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE--EEEE
T ss_pred             cEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc--eEEE
Confidence            999999876654333 345567888887665566666 9999999998776543 2     2357888999998  3334


Q ss_pred             CCCCccEEEEEEccCCcc-----c-----------ccCceEEEEeCCCCCEEEEEeC------C----CcEEEEEEcCCC
Q 019672          154 ASTTKGSVLVYNVMELHS-----H-----------CEAPLAAIVLSSNGMYIATASE------Q----GTIIRVFLVSEA  207 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~-----~-----------~~~~i~~~~~s~dg~~lat~s~------d----g~~i~vwd~~~~  207 (337)
                      .  .||.+++|+......     +           +...|.+|.|.+++.+|++=..      +    ...+.|...+.+
T Consensus       179 ~--~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~  256 (388)
T 1xip_A          179 L--KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDG  256 (388)
T ss_dssp             E--TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETT
T ss_pred             E--cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCC
Confidence            3  389999998776552     1           3467999999999998887332      1    112455553333


Q ss_pred             cee-Eee----------ccCCcceeEEEEEeecCCCcccEEEEEeCCCc-EEEEe
Q 019672          208 TKS-YSF----------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-LHVFS  250 (337)
Q Consensus       208 ~~~-~~~----------~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~-v~iw~  250 (337)
                      ... .++          .|.++-...+=-.|.|+.+  ++++++|...+ |.|++
T Consensus       257 ~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~--~l~iv~Ss~S~di~il~  309 (388)
T 1xip_A          257 SASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDA--NVNVLASSCSSEVSIWD  309 (388)
T ss_dssp             EEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTE--EEEEEEETTCSBCEEEC
T ss_pred             CceeEccccCcCCcCCccCCceeeeeehhcccccCC--cEEEEeCCCCcceEEec
Confidence            321 111          1111111122236777766  47777776654 77775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.22  E-value=3.8e-09  Score=97.16  Aligned_cols=231  Identities=13%  Similarity=0.042  Sum_probs=147.6

Q ss_pred             EEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeC---------CEEEEEEccCCCEEEEEeCCCCCC
Q 019672           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .+.++|||++|.++.           .+.+.++|..+++.+......         .-..+.+.++...+......    
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----
Confidence            789999999887764           345799999999887766432         11234566677766555421    


Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCceeEEEEcC-CeEEEEE-CCeEEEEECCCCeeee----eecCCCCCceEEEEeeCC
Q 019672           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KRLVIVL-REKTYIYDANTLAILD----TIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~~~v~~-d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~  145 (337)
                       .+++|.+.|+.+++.+.++.....+ .+.... ..++... |+++.+.++.+++...    .+.....+... .+...+
T Consensus       198 -~~~~VsVID~~t~kvv~~I~v~g~~-~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~-~~~~~~  274 (426)
T 3c75_H          198 -PAPAVGVVDLEGKTFDRMLDVPDCY-HIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLIN-HPAFSL  274 (426)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCS-CCEECT
T ss_pred             -CCCeEEEEECCCCeEEEEEEcCCce-eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceee-EeeecC
Confidence             2689999999999999988875531 222222 2233333 8888888886665442    22222222111 112234


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccc--c---------------cCceEEEEeCCCCCEEEEEeC----------CCcE
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSH--C---------------EAPLAAIVLSSNGMYIATASE----------QGTI  198 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~--~---------------~~~i~~~~~s~dg~~lat~s~----------dg~~  198 (337)
                      ++..+++..  ..+.|.+.|+......  .               ......++++|||+++..+..          .++ 
T Consensus       275 dg~~~~~~s--~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-  351 (426)
T 3c75_H          275 RSGRLVWPT--YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-  351 (426)
T ss_dssp             TTCEEEEEB--TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-
T ss_pred             CCCEEEEEe--CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-
Confidence            444444444  3688999998643211  0               022233789999987776642          234 


Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCccc
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQ  257 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~  257 (337)
                      |-+.|+.+++.+.++..+   .....|+|+|||+  .+|+++. .+++|.|+|+.+.+..
T Consensus       352 VsVID~~T~kvv~~I~vg---~~P~gia~spDg~--~~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          352 VVVLNAETGERINKIELG---HEIDSINVSQDAE--PLLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEETTTCCEEEEEEEE---EEECEEEECCSSS--CEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEECCCCeEEEEEECC---CCcCeEEEccCCC--EEEEEEcCCCCeEEEEECCCCCEE
Confidence            689999999999888643   2468899999996  2455555 5899999999887653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.22  E-value=4e-08  Score=89.25  Aligned_cols=268  Identities=10%  Similarity=0.012  Sum_probs=161.3

Q ss_pred             EEcCCCCEEEEEcC--C----ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCC---CCCCCCceEEEEECCC
Q 019672           14 SFNQDNSGFALSTK--D----GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE---QPSLSPRRLCLFNTTT   84 (337)
Q Consensus        14 ~fs~dg~~la~g~~--~----g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~d~~v~iwd~~~   84 (337)
                      ...|++.++.+...  .    .+.+||..+++++.....+....+.+.++...+.++....   ..+..++.|.+||..+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            44588887665542  2    5589999999887666543333667777777776654200   0001367899999999


Q ss_pred             CCEEEEEEcC--------CceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeee-ecCCCCCceEEEEeeCCCccEE
Q 019672           85 GTALRELNFL--------TSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        85 ~~~~~~~~~~--------~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      .+.+.++...        .....+.++++  .++++.   ++.|.++| .+++.+.. +..+.   . ..+.+.+...++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~-~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---C-YHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---e-EEEEeCCCceEE
Confidence            9988887654        12346777765  566654   36899999 99988877 65432   2 334444444444


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----------Cce-EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeecc--
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----------APL-AAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRR--  215 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----------~~i-~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~--  215 (337)
                      +.+   .||.+.++|. +++....          .++ ....+.+++..++..+..+. +.+.|+.++.  .+..+..  
T Consensus       182 ~~~---~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          182 LLC---AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             EEc---CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceEeeeeeecC
Confidence            444   3889999999 6654421          111 23456676665555556676 5789987653  2222211  


Q ss_pred             ------CCcceeEEEEEeecCCCcccEEEEEeC----------CCcEEEEecCCCcccCCCCcccccccccccccceeec
Q 019672          216 ------GTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  279 (337)
Q Consensus       216 ------~~~~~~i~~l~fs~dg~~~~~las~s~----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w  279 (337)
                            +..+.....++|+||++   .|.++..          .+.|.++|+.+.+...+.         .++.   .-|
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~---~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i---------~~g~---~p~  321 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSD---GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI---------SLGH---DVD  321 (373)
T ss_pred             CcccccceecCceEeEEECCCCC---EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE---------ECCC---CcC
Confidence                  00112244578999998   6666543          357999998766542210         0011   011


Q ss_pred             ccccceeeeeccCCCcccC-EEEEEE-eCCcEEEEEEec
Q 019672          280 DPADHHVLRNAFPAGVKRA-SVSVIT-YNGYFVEYIFSI  316 (337)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~~~~~~~~~  316 (337)
                                .+.+.++++ .+++.. .++.+.+|++.+
T Consensus       322 ----------~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          322 ----------AISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ----------eEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence                      122355567 677776 489988887654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=1.6e-08  Score=88.74  Aligned_cols=214  Identities=11%  Similarity=0.043  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCE-EEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           10 VFFVSFNQDNSG-FALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        10 v~~~~fs~dg~~-la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      -.+..|++++.. +.+...+ .+..||.++++.........+..+.+..+.+++  ++.       ++.|.+||.++++.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~--v~~-------~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYV--ATI-------GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEE--EEE-------TTEEEEEETTTTEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEE--EEE-------CCeEEEEECCCCcE
Confidence            457889996654 5555544 478999988765332223455566666666633  332       46899999988765


Q ss_pred             EEEEEcC-----CceeEEEEcCCe-EEEEE--C---------CeEEEEECCC-CeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           88 LRELNFL-----TSILAVRLNKKR-LVIVL--R---------EKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        88 ~~~~~~~-----~~v~~i~~~~~~-~~v~~--d---------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .......     ..+.++.+++++ +.++.  .         ....||.+.. ++.......   ......++++|++..
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~spdg~~  162 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECTTSCE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcCCCCE
Confidence            4333321     246788888765 44443  1         2234554432 332222211   112235566677766


Q ss_pred             EEEcCCCCccEEEEEEc--cCCccc-----c-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC
Q 019672          150 LAVPASTTKGSVLVYNV--MELHSH-----C-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~--~~~~~~-----~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      +.++.. .++.|.+||+  .++...     .     ......++++++|++.++....+. |.+||..+|+.+..+... 
T Consensus       163 lyv~~~-~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~p-  239 (297)
T 3g4e_A          163 FYYIDS-LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKLP-  239 (297)
T ss_dssp             EEEEEG-GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEECS-
T ss_pred             EEEecC-CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEECC-
Confidence            655543 4788999987  343321     1     145789999999998887777776 579999999988877543 


Q ss_pred             cceeEEEEEee-cCCCcccEEEEEeC
Q 019672          218 YPSTIFSLSFG-QSMQFQDILVATSS  242 (337)
Q Consensus       218 ~~~~i~~l~fs-~dg~~~~~las~s~  242 (337)
                       ...+++++|+ ||++   .|..++.
T Consensus       240 -~~~~t~~~f~g~d~~---~L~vt~~  261 (297)
T 3g4e_A          240 -VDKTTSCCFGGKNYS---EMYVTCA  261 (297)
T ss_dssp             -SSBEEEEEEESGGGC---EEEEEEB
T ss_pred             -CCCceEEEEeCCCCC---EEEEEcC
Confidence             2358999999 8988   6655554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.21  E-value=6.5e-09  Score=94.16  Aligned_cols=256  Identities=10%  Similarity=0.063  Sum_probs=150.2

Q ss_pred             CCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCc
Q 019672           18 DNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS   96 (337)
Q Consensus        18 dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~   96 (337)
                      ++..+.+++.+ .+..+|.++++++.................+.+ +++.      .++.|..+|.++|+.+.+.....+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v-~v~~------~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLV-LIHT------SNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEE-EEEC------TTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEE-EEEc------CCCeEEEEECCCCcEEEEEeCCCC
Confidence            34455556554 579999999998876654321100001112333 3443      378999999999999888776544


Q ss_pred             e------eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCc-----eEEEEeeCC--CccEEEEcCCCCccEEE
Q 019672           97 I------LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK-----GLCAFSPSL--NACFLAVPASTTKGSVL  162 (337)
Q Consensus        97 v------~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~la~~~~~~dg~v~  162 (337)
                      +      .......+.++++. ++.+..+|..+++.+..........     .+..+...|  .+..+..++  .++.+.
T Consensus       175 ~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~--~~g~l~  252 (376)
T 3q7m_A          175 SLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA--YNGNLT  252 (376)
T ss_dssp             ----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC--TTSCEE
T ss_pred             ceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe--cCcEEE
Confidence            3      22233456666665 7799999999998877664321100     000000001  122444444  378899


Q ss_pred             EEEccCCccccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          163 VYNVMELHSHCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       163 i~d~~~~~~~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      .+|..+++....   .....+..  ++..|..++.+|. +..+|..+|+.+.+..... ...+.+....  +.   .|..
T Consensus       253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~--~~---~l~v  323 (376)
T 3q7m_A          253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDLL-HRLLTSPVLY--NG---NLVV  323 (376)
T ss_dssp             EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTTT-TSCCCCCEEE--TT---EEEE
T ss_pred             EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeecccC-CCcccCCEEE--CC---EEEE
Confidence            999998876543   33444444  3567778888887 5799999999887664211 1112222222  34   6889


Q ss_pred             EeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          240 TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      ++.+|.|+++|.++++..-+      +  ...+..   ++..          + -..+.+|++++.||.++.|+
T Consensus       324 ~~~~g~l~~~d~~tG~~~~~------~--~~~~~~---~~~~----------~-~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          324 GDSEGYLHWINVEDGRFVAQ------Q--KVDSSG---FQTE----------P-VAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             ECTTSEEEEEETTTCCEEEE------E--ECCTTC---BCSC----------C-EEETTEEEEEBTTSCEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEE------E--ecCCCc---ceeC----------C-EEECCEEEEEeCCCEEEEEe
Confidence            99999999999887653210      0  000000   0000          0 01237899999999999885

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=3.6e-09  Score=90.93  Aligned_cols=216  Identities=8%  Similarity=0.001  Sum_probs=131.6

Q ss_pred             CCceEEEEECCCCCEEEEE-EcCCceeEEEEcCC-eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .++.|.+||..++...... .....+.++.++++ .++++. ++.|.+||....... .+.. .......++..++++.+
T Consensus        44 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~~g~l  121 (270)
T 1rwi_B           44 MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLPF-DGLNYPEGLAVDTQGAV  121 (270)
T ss_dssp             SSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECCC-CSCSSEEEEEECTTCCE
T ss_pred             CCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEe-eeec-CCcCCCcceEECCCCCE
Confidence            3689999998665432211 11235678888765 455555 679999998765432 2221 11123556667777766


Q ss_pred             EEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++..  .++.|.+||..+.....     ...+.+++++|+|+++++...++. |.+||...+........+  ...+.+
T Consensus       122 ~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~~~~~~~~~~--~~~p~~  196 (270)
T 1rwi_B          122 YVADR--GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESNNQVVLPFTD--ITAPWG  196 (270)
T ss_dssp             EEEEG--GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTCCEEECCCSS--CCSEEE
T ss_pred             EEEEC--CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCCceEeecccC--CCCceE
Confidence            66544  36889999866543321     146789999999998777766666 689998776544322111  245789


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  304 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~  304 (337)
                      |+++++|.   ++++...++.|.+|+........        .   ........          ..+...++++.+++..
T Consensus       197 i~~d~~g~---l~v~~~~~~~v~~~~~~~~~~~~--------~---~~~~~~~p----------~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          197 IAVDEAGT---VYVTEHNTNQVVKLLAGSTTSTV--------L---PFTGLNTP----------LAVAVDSDRTVYVADR  252 (270)
T ss_dssp             EEECTTCC---EEEEETTTSCEEEECTTCSCCEE--------C---CCCSCSCE----------EEEEECTTCCEEEEEG
T ss_pred             EEECCCCC---EEEEECCCCcEEEEcCCCCccee--------e---ccCCCCCc----------eeEEECCCCCEEEEEC
Confidence            99999998   88888888999999975432211        0   00000000          1122244556556667


Q ss_pred             eCCcEEEEEEecCCC
Q 019672          305 YNGYFVEYIFSINNC  319 (337)
Q Consensus       305 ~dg~~~~~~~~~~~~  319 (337)
                      .++.|++|+++.++.
T Consensus       253 ~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          253 GNDRVVKLTSLEHHH  267 (270)
T ss_dssp             GGTEEEEECCCGGGS
T ss_pred             CCCEEEEEcCCCccc
Confidence            799999998866543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.18  E-value=7.3e-09  Score=101.82  Aligned_cols=229  Identities=7%  Similarity=-0.004  Sum_probs=134.8

Q ss_pred             cCCCCEEEEEcC-Cc---eEEEe--CCCCc--EEEEEe----eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672           16 NQDNSGFALSTK-DG---FKIFD--SSTGR--LCYERA----VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus        16 s~dg~~la~g~~-~g---~~vw~--~~~~~--~~~~~~----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +|||++++-... .+   -.+|.  ...++  .+....    .+  .+....++++++.+++.....  +..+.+|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~--G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN--AADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET--TCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC--CCceEEEEEEE
Confidence            478988775543 22   25564  33443  232211    11  245567778888888764310  02457999999


Q ss_pred             CCCCCEE-EEEEcCCceeEEEEcCCe--EEEEE-CCe-------------EEEEECCCCee--eeeecCCCCCceEEEEe
Q 019672           82 TTTGTAL-RELNFLTSILAVRLNKKR--LVIVL-REK-------------TYIYDANTLAI--LDTIDTVPNLKGLCAFS  142 (337)
Q Consensus        82 ~~~~~~~-~~~~~~~~v~~i~~~~~~--~~v~~-d~~-------------i~i~d~~~~~~--~~~~~~~~~~~~~~~~~  142 (337)
                      +.+++.+ ...........+.|++++  ++.+. +..             |++|++.+++.  ...+....+......+.
T Consensus       154 l~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          154 VDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            9999864 211011122568888774  44444 443             99999987752  12223333334566777


Q ss_pred             eCCCccEEEEcCCCC--ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeC---CCcEEEEEEcCCCce--eE
Q 019672          143 PSLNACFLAVPASTT--KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASE---QGTIIRVFLVSEATK--SY  211 (337)
Q Consensus       143 ~~~~~~~la~~~~~~--dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~---dg~~i~vwd~~~~~~--~~  211 (337)
                      ++|++.+|++.+...  ...|.++|..++...    +...+....+ ++|.+++.+..   ++. |.+||+.+++.  ..
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~~~~  311 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARASWK  311 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGGGCE
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCccCCe
Confidence            888888888766311  226777766544321    1244555566 66664444432   455 57999987753  23


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+..+.....|.+++|+ ++.   ++++...|+..+||.++
T Consensus       312 ~l~~~~~~~~l~~~~~~-~~~---lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          312 EIVPEDSSASLLSVSIV-GGH---LSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEECCCSSCEEEEEEEE-TTE---EEEEEEETTEEEEEEEE
T ss_pred             EEecCCCCCeEEEEEEE-CCE---EEEEEEECCEEEEEEEe
Confidence            33322223458888998 666   89999999998888765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.12  E-value=5.7e-12  Score=114.59  Aligned_cols=257  Identities=11%  Similarity=0.032  Sum_probs=130.5

Q ss_pred             CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-
Q 019672           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-   95 (337)
Q Consensus        18 dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-   95 (337)
                      ++..+++++.++ +..||..+|+++.......+...-+..+ +.+++++.      .|+.|..||.++|+.+..+.++. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~-g~~~v~~s------~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVE-EPAFLPDP------NDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC------CCEEECT------TTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcC-CCEEEEeC------CCCEEEEEECCCCceeeeeeccCc
Confidence            466777777765 6999999999987765432211111112 22233332      58999999999998776654431 


Q ss_pred             -cee-EEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672           96 -SIL-AVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (337)
Q Consensus        96 -~v~-~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~  171 (337)
                       .+. ...+ ..+.++++. ++.++.||..+++.+..+..+.    ...+++  ++..+++++  .++.|..||..+++.
T Consensus        81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p--~~~~v~~~~--~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSP--STSLLYLGR--TEYTITMYDTKTREL  152 (369)
T ss_dssp             HHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEE--EEEEEECCCSSSSSC
T ss_pred             cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccc--cCCEEEEEe--cCCEEEEEECCCCCE
Confidence             010 0011 233344434 7899999999998887775432    122233  455666665  489999999999876


Q ss_pred             ccc---CceEEEEeCCCC---CEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE----EEEe
Q 019672          172 HCE---APLAAIVLSSNG---MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL----VATS  241 (337)
Q Consensus       172 ~~~---~~i~~~~~s~dg---~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l----as~s  241 (337)
                      ...   ......++++++   ..++.++.||. ++.||..+|+.+.++..+.  ..+....++++|.   ..    ..+ 
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~~--pv~~~~~~~~dg~---~~v~~~~~~-  225 (369)
T 2hz6_A          153 RWNATYFDYAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNYAS--PVVAFYVWQREGL---RKVMHINVA-  225 (369)
T ss_dssp             CCEEEEEEECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEECSS--CEEEEEECTTSSC---EEECCEEEE-
T ss_pred             EEeEecccccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecCCC--ceEEEEEecCCce---Eeccceeec-
Confidence            543   222333444432   45777889997 5899999999988775321  1233456667774   32    222 


Q ss_pred             CCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          242 SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       242 ~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                       ++.++.+|..+++...                 ...|...........+   ..+..|++++.||.++.++....
T Consensus       226 -~~~l~~ld~~tG~~~~-----------------~~~W~~~~~~~~~sp~---~~~g~lyv~~~~G~l~al~~~~~  280 (369)
T 2hz6_A          226 -VETLRYLTFMSGEVGR-----------------ITKWKYPFPKETEAKS---KLTPTLYVGKYSTSLYASPSMVH  280 (369)
T ss_dssp             -HHHHHHHHHHHHHHHH-----------------HHTSCCCCCCHHHHHH---HSEEEECBEECSSCEECCEEEEC
T ss_pred             -ccceeeeehhcCCccc-----------------ceeeeeccCccccccc---cccceEEEecccCCEEecCcccc
Confidence             3456666654432000                 0122221100000000   12368999999999999888743

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.11  E-value=1.2e-07  Score=85.84  Aligned_cols=217  Identities=9%  Similarity=0.043  Sum_probs=134.6

Q ss_pred             CCEEEEEcCC-ceEEEeCCCCcEEEEEeeCC----------EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           19 NSGFALSTKD-GFKIFDSSTGRLCYERAVGA----------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        19 g~~la~g~~~-g~~vw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      +..+.+++.+ .+..||.++++++.......          ..........+.+.+.+       .++.|..+|.++|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-------EKAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-------TTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-------CCCEEEEEECCCCCE
Confidence            4556666655 57999999999887655421          11122223344444443       378999999999999


Q ss_pred             EEEEEcCCcee-EEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceE---EEEeeCCCccEEEEcCCCCccEEE
Q 019672           88 LRELNFLTSIL-AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus        88 ~~~~~~~~~v~-~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                      +.+......+. ......+.+++.. ++.+..+|..+++.+............   ...... ++ .+.++.  .+|.|.
T Consensus       126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~-~v~~g~--~~g~l~  201 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG-AAVVGG--DNGRVS  201 (376)
T ss_dssp             EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT-EEEECC--TTTEEE
T ss_pred             EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC-EEEEEc--CCCEEE
Confidence            88777654332 2234566666666 789999999999888776543221100   011111 22 444544  478999


Q ss_pred             EEEccCCcccccCce---------E---EEEeCC--CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEee
Q 019672          163 VYNVMELHSHCEAPL---------A---AIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  228 (337)
Q Consensus       163 i~d~~~~~~~~~~~i---------~---~~~~s~--dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs  228 (337)
                      .+|..+++...+.+.         .   .+.-.|  .+..+..++.+|. +..+|..+|+.+.+....    ...++...
T Consensus       202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~~----~~~~~~~~  276 (376)
T 3q7m_A          202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKRELG----SVNDFIVD  276 (376)
T ss_dssp             EEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECCC----CEEEEEEE
T ss_pred             EEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccCC----CCCCceEE
Confidence            999988876532100         0   011222  3456777788887 579999999988776432    13334443


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                        +.   .+..++.++.|..+|.++++.
T Consensus       277 --~~---~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          277 --GN---RIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             --TT---EEEEEETTCCEEEEETTTCCE
T ss_pred             --CC---EEEEEcCCCeEEEEECCCCcE
Confidence              44   688888899999999887653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=1.2e-08  Score=91.43  Aligned_cols=235  Identities=10%  Similarity=0.031  Sum_probs=141.4

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCc-eEEEeCCCCcEEEE----E----eeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            8 YPVFFVSFNQDNSGFALST--KDG-FKIFDSSTGRLCYE----R----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~--~~g-~~vw~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .....++++++|+.+++..  .++ .+||.++++++..-    .    +.....-+.+..+.. +.++..+. ....+.+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~-~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGN-QSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHH-HHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCC-CcCCCCe
Confidence            4678999999999988863  223 46666555553310    0    012233344443333 33333210 0001468


Q ss_pred             EEEEECCCCCEEEEEEcCC-------ceeEEEEcC--CeEEEEE-----CCeEEEEECCCCeeeeeecCCCC--------
Q 019672           77 LCLFNTTTGTALRELNFLT-------SILAVRLNK--KRLVIVL-----REKTYIYDANTLAILDTIDTVPN--------  134 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~~-------~v~~i~~~~--~~~~v~~-----d~~i~i~d~~~~~~~~~~~~~~~--------  134 (337)
                      |.+||+++++.+..+..+.       .+.++.+++  ..++++.     ++.|.+||+.+++..+.+..+..        
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999999999888777642       357888884  3455553     45899999988776554432100        


Q ss_pred             -------------------CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc--------cc-------ccCceEEE
Q 019672          135 -------------------LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--------SH-------CEAPLAAI  180 (337)
Q Consensus       135 -------------------~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~--------~~-------~~~~i~~~  180 (337)
                                         ..+...++.+|++..|+++.. ....+..++.....        ..       +......+
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                               012456677778877766653 23456666542110        00       11345679


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          181 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +++++|+++++...++. |.+||.++|+.. .+..........+|+|+++|+   ++++.+..+.+.+|.
T Consensus       254 a~d~~G~l~va~~~~~~-V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g~---l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSA-IGVITSADRAYK-LLVTDEKLSWTDSFNFGSDGY---LYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EECTTCCEEEEEGGGTE-EEEEETTTTEEE-EEEECGGGSCEEEEEECTTSC---EEEEECCGGGSGGGB
T ss_pred             EECCCCCEEEEccCCCe-EEEEECCCCCEE-EEEECCceecCCeeEECCCCc---EEEEeCccccccccc
Confidence            99999999998888887 689998667643 222221123478999999998   777777665554444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.11  E-value=1.9e-09  Score=97.48  Aligned_cols=222  Identities=14%  Similarity=0.032  Sum_probs=141.5

Q ss_pred             EEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeC---------CEEEEEEccCCCEEEEEeCCCCCC
Q 019672           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .+.|+|||+++.++.           ++.+.+||+.+++.+.+...+         .-..+.+.+++..+.....+    
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~----  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG----  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC----
Confidence            699999999988775           244799999999988776543         12345667777766655421    


Q ss_pred             CCCceEEE--EECCCCCEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCC-----Ceeee----eecCCCCCceE
Q 019672           72 LSPRRLCL--FNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANT-----LAILD----TIDTVPNLKGL  138 (337)
Q Consensus        72 ~~d~~v~i--wd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~-----~~~~~----~~~~~~~~~~~  138 (337)
                       ..+.|.+  +|..+   +.++.....+ .+...++..+++.  |+++.+.|+.+     ++...    .+.....+.  
T Consensus       145 -~~~~v~V~~iD~~t---v~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--  217 (368)
T 1mda_H          145 -SSAAAGLSVPGASD---DQLTKSASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--  217 (368)
T ss_dssp             -SSCEEEEEETTTEE---EEEEECSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--
T ss_pred             -CCCeEEEEEEchhh---ceEEECCCce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--
Confidence             2467888  99987   5566543321 1223333344433  77888888876     43331    122222232  


Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCc--cccc---------------CceEEEEeCCCCCEEEEEeC-C-----
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCE---------------APLAAIVLSSNGMYIATASE-Q-----  195 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~--~~~~---------------~~i~~~~~s~dg~~lat~s~-d-----  195 (337)
                       +   .+++..+++.+  . +.|.+.|+.+..  ....               .....++|+|||+++..+.. .     
T Consensus       218 -~---~~~~~~~~~vs--~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          218 -Q---ANYPGMLVWAV--A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             -E---ETTTTEEEECB--S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             -c---cccCCEEEEEc--C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence             2   23344555555  3 789999986432  1110               11223789999998876543 2     


Q ss_pred             ---CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCCccc
Q 019672          196 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQ  257 (337)
Q Consensus       196 ---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~~~~  257 (337)
                         +.. .++|+.+++.+.++..+.   ....|+|+|||+  ..+++.. .+++|.|+|+.+.+..
T Consensus       291 ~~~~~~-~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~--~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          291 AAAENT-SSVTASVGQTSGPISNGH---DSDAIIAAQDGA--SDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SCEEEE-EEEESSSCCEEECCEEEE---EECEEEECCSSS--CEEEEEETTTTEEEEEESSSCEEE
T ss_pred             ccCCCE-EEEECCCCeEEEEEECCC---CcceEEECCCCC--EEEEEccCCCCeEEEEECCCCcEE
Confidence               243 499999999988876432   478899999997  1456666 5899999999877643

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.10  E-value=1.4e-07  Score=82.55  Aligned_cols=172  Identities=11%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             CCceEEEEECCCCCEEEEEE-----cCCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeee-ecCCCC--CceEEEE
Q 019672           73 SPRRLCLFNTTTGTALRELN-----FLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDT-IDTVPN--LKGLCAF  141 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~-----~~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~-~~~~~~--~~~~~~~  141 (337)
                      .++.|.+||..+++......     ....+.++.++++  .+.++. .+.|.+||.. ++.... ......  ......+
T Consensus        44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i  122 (314)
T 1pjx_A           44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC  122 (314)
T ss_dssp             ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred             CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCE
Confidence            36799999988887543222     2246888999876  456666 5689999988 654332 221111  1224466


Q ss_pred             eeCCCccEEEEcCCCCc---------------cEEEEEEccCCcccc----cCceEEEEeC----CCCCEEEEE-eCCCc
Q 019672          142 SPSLNACFLAVPASTTK---------------GSVLVYNVMELHSHC----EAPLAAIVLS----SNGMYIATA-SEQGT  197 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~d---------------g~v~i~d~~~~~~~~----~~~i~~~~~s----~dg~~lat~-s~dg~  197 (337)
                      ..++++.+.++...  +               +.|..||.. ++...    ......++++    |+|+.|..+ +.++.
T Consensus       123 ~~d~~g~l~v~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~  199 (314)
T 1pjx_A          123 AFDYEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK  199 (314)
T ss_dssp             EECTTSCEEEEECB--CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred             EECCCCCEEEEecC--cccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence            66777776665542  2               567777765 33221    1456889999    999765555 45565


Q ss_pred             EEEEEEcC-CCce-----eEeeccCCcc-eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          198 IIRVFLVS-EATK-----SYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       198 ~i~vwd~~-~~~~-----~~~~~~~~~~-~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                       |.+||.. +++.     ...+. + +. ..+..++++++|+   ++++...++.|.+||.++.
T Consensus       200 -i~~~~~~~~g~~~~~~~~~~~~-~-~~~~~p~~i~~d~~G~---l~v~~~~~~~i~~~d~~~g  257 (314)
T 1pjx_A          200 -LWSYDIKGPAKIENKKVWGHIP-G-THEGGADGMDFDEDNN---LLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             -EEEEEEEETTEEEEEEEEEECC-C-CSSCEEEEEEEBTTCC---EEEEEETTTEEEEECTTCB
T ss_pred             -EEEEECCCCCccccceEEEECC-C-CCCCCCCceEECCCCC---EEEEEcCCCEEEEEcCCCC
Confidence             6899986 4542     22221 1 11 3478899999998   8888878899999997643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.10  E-value=4.5e-07  Score=79.35  Aligned_cols=190  Identities=11%  Similarity=0.040  Sum_probs=121.0

Q ss_pred             EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-EEEEECCeEEEEECCCCeeeeeecCC
Q 019672           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~d~~i~i~d~~~~~~~~~~~~~  132 (337)
                      +....+.+.++..      ..++|..||..+++. ..+.....+.++.+++++ ++++.++.|.+||..+++........
T Consensus        20 w~~~~~~l~~~d~------~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~   92 (297)
T 3g4e_A           20 WEEVSNSLLFVDI------PAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATVD   92 (297)
T ss_dssp             EETTTTEEEEEET------TTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEECC
T ss_pred             EECCCCEEEEEEC------CCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEecC
Confidence            3344455666654      478999999988765 456667789999998754 66666889999999877643322211


Q ss_pred             C--CCceEEEEeeCCCccEEEEcCC---------CCccEEEEEEccCCccc--c--cCceEEEEeCCCCCEEEE-EeCCC
Q 019672          133 P--NLKGLCAFSPSLNACFLAVPAS---------TTKGSVLVYNVMELHSH--C--EAPLAAIVLSSNGMYIAT-ASEQG  196 (337)
Q Consensus       133 ~--~~~~~~~~~~~~~~~~la~~~~---------~~dg~v~i~d~~~~~~~--~--~~~i~~~~~s~dg~~lat-~s~dg  196 (337)
                      .  .......+..++++.+.++...         ...+.|..+|.. ++..  .  ....+.++|+|||+.|.. .+.++
T Consensus        93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence            1  1233556777788876664311         012345445543 2211  1  155789999999997654 44556


Q ss_pred             cEEEEEEc--CCCcee--Eeec-cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          197 TIIRVFLV--SEATKS--YSFR-RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       197 ~~i~vwd~--~~~~~~--~~~~-~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      . |.+||+  .+|...  ..+. ..........++++++|+   +.++....+.|.+||.++++
T Consensus       172 ~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~---lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          172 S-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK---LWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             E-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC---EEEEEETTTEEEEECTTTCC
T ss_pred             c-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC---EEEEEcCCCEEEEEcCCCce
Confidence            5 688987  566432  1111 111123578899999998   88888888899999987544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=3.4e-08  Score=97.04  Aligned_cols=238  Identities=10%  Similarity=0.050  Sum_probs=141.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-C-----ceEEEeCCCCcEEEEEeeCCE--EEEEEccCCCEEEEEeCCCCC------CC
Q 019672            7 SYPVFFVSFNQDNSGFALSTK-D-----GFKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQP------SL   72 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~-~-----g~~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~------~~   72 (337)
                      ...|..++|||||++||-+.+ .     .+++||+++++.+... ...+  ..+.+. +++.+++++.....      ..
T Consensus       128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            346888999999999885432 1     2589999999865432 1122  334677 88888887753110      01


Q ss_pred             CCceEEEEECCCCCE--EEEEEc----CCceeEEEEcCCe--EEEEE-----CCeEEEEECCCCe-eeeeecCCCCCceE
Q 019672           73 SPRRLCLFNTTTGTA--LRELNF----LTSILAVRLNKKR--LVIVL-----REKTYIYDANTLA-ILDTIDTVPNLKGL  138 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~--~~~~~~----~~~v~~i~~~~~~--~~v~~-----d~~i~i~d~~~~~-~~~~~~~~~~~~~~  138 (337)
                      ....|.+|++.++..  ..-+..    ...+..+.+++++  +++..     .+.|+++|+.++. ....+..+... ..
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~-~~  284 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA-DV  284 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS-CE
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc-eE
Confidence            235799999987652  222222    2236778888765  33332     2489999997663 23344333222 12


Q ss_pred             EEEeeCCCccEEEEcCCC-CccEEEEEEccCCcc-----c--ccCceEEEEeCCCCCEEEEEeCCC-c-EEEEEEcCCCc
Q 019672          139 CAFSPSLNACFLAVPAST-TKGSVLVYNVMELHS-----H--CEAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEAT  208 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~-~dg~v~i~d~~~~~~-----~--~~~~i~~~~~s~dg~~lat~s~dg-~-~i~vwd~~~~~  208 (337)
                      ..++++++ .+++....+ ..+.|..+|+.++..     +  +...+.  .|+++|+.|+....++ . .|++||+..+ 
T Consensus       285 ~~~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          285 SLVDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EEEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EEEeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            22444333 333333321 147899999987543     1  113333  8999999888776544 1 3678998754 


Q ss_pred             eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC----CcEEEEecCCCc
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAI  255 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d----g~v~iw~l~~~~  255 (337)
                      ....+... ....+..+.++|+++   .|+....+    ++|..||+.+++
T Consensus       361 ~~~~l~~p-~~~~~~~~~~~~d~~---~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 RVREVALP-GLGSVSGFNGKHDDP---ALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECCS-SSSEEEECCCCTTCS---CEEEEEECSSSCCEEEEECTTTCC
T ss_pred             eeEEeecC-CCceEEeeecCCCCC---EEEEEecCCCCCCEEEEEECCCCe
Confidence            44444322 234577888899988   55555444    789999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.09  E-value=2e-08  Score=92.41  Aligned_cols=267  Identities=11%  Similarity=0.037  Sum_probs=163.2

Q ss_pred             CCCCEEEEEcC------CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC---CCCCCceEEEEECCCCCE
Q 019672           17 QDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ---PSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        17 ~dg~~la~g~~------~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~d~~v~iwd~~~~~~   87 (337)
                      +++..+.+...      +.+.++|+.+++.+.....+....+.+.++...+.+......   .+-.++.|.++|..+++.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            57777665544      357999999999887765433336677777776655531000   000257899999999999


Q ss_pred             EEEEEcC--------CceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           88 LRELNFL--------TSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        88 ~~~~~~~--------~~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      +.++...        .....+.++++  +++++.   ++.|.+.|+.+++.+.++....    ...+.+.+...+++.++
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCR  237 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEET
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcC
Confidence            9988764        23345677664  566665   4689999999999998887532    12334433334444443


Q ss_pred             CCCccEEEEEEccCCcccc---------cCce-EEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee--Eeecc-------
Q 019672          155 STTKGSVLVYNVMELHSHC---------EAPL-AAIVLSSNGMYIATASEQGTIIRVFLVSEATKS--YSFRR-------  215 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~---------~~~i-~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~--~~~~~-------  215 (337)
                         ||.+.+.++.+++...         ..++ ..+.|+++|..++..+..|+ +.+.|+..+...  ..+..       
T Consensus       238 ---dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~~~~~~~~i~  313 (426)
T 3c75_H          238 ---DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPIEALTEAERA  313 (426)
T ss_dssp             ---TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCEESSCTTTGG
T ss_pred             ---CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeeeeeccccccc
Confidence               6777777774443220         1221 24568999998888888886 589998755421  11110       


Q ss_pred             -CCcceeEEEEEeecCCCcccEEEEEeC----------CCcEEEEecCCCcccCCCCcccccccccccccceeecccccc
Q 019672          216 -GTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  284 (337)
Q Consensus       216 -~~~~~~i~~l~fs~dg~~~~~las~s~----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~  284 (337)
                       +..+.....++|+||++   .|.++..          .++|.++|+.+.+...+.         .++.   .-|.    
T Consensus       314 ~g~~p~g~~~va~s~dg~---rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I---------~vg~---~P~g----  374 (426)
T 3c75_H          314 DDWRPGGWQQTAYHRQSD---RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI---------ELGH---EIDS----  374 (426)
T ss_dssp             GTEEECSSSCEEEEGGGT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---------EEEE---EECE----
T ss_pred             cccccCCceeeEEcCCCC---EEEEEecccccccccCCCCEEEEEECCCCeEEEEE---------ECCC---CcCe----
Confidence             00011122368999988   6666532          357999998876543210         0011   1122    


Q ss_pred             eeeeeccCCCcccC-EEEEEE-eCCcEEEEEEec
Q 019672          285 HVLRNAFPAGVKRA-SVSVIT-YNGYFVEYIFSI  316 (337)
Q Consensus       285 ~~~~~~~~~~~~~~-~l~~~~-~dg~~~~~~~~~  316 (337)
                            +.+.++++ ++++.. .+|.|.++++.+
T Consensus       375 ------ia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          375 ------INVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             ------EEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ------EEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence                  22356667 888888 589999987643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.08  E-value=3.3e-07  Score=81.47  Aligned_cols=212  Identities=11%  Similarity=0.014  Sum_probs=129.2

Q ss_pred             eEEEEEcCCCCE-EEEEcC-CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           10 VFFVSFNQDNSG-FALSTK-DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        10 v~~~~fs~dg~~-la~g~~-~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      ..+..|+|++.. +.++.. +++.+||.++++.........+..+.+..+.++++  +.       .+.|.+||.++++.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v--~~-------~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLI--AS-------DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEE--EE-------TTEEEEEETTTCCE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEE--EE-------CCCEEEEECCCCcE
Confidence            467899998654 556654 45789999887653222223444455555544333  32       23599999988875


Q ss_pred             EEEEEcC-----CceeEEEEcCCe-EEEEEC--------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           88 LRELNFL-----TSILAVRLNKKR-LVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        88 ~~~~~~~-----~~v~~i~~~~~~-~~v~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .......     ..+.++.+++++ ++++..        +.|..++  +++...... .  ......+.+++++..++++
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~--~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-D--ISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-E--ESSEEEEEECTTSCEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-C--CcccCCeEEcCCCCEEEEE
Confidence            4332221     247788898765 444431        3566666  454332211 1  1123455667777666555


Q ss_pred             CCCCccEEEEEEcc--CC-cc-----cc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce
Q 019672          154 ASTTKGSVLVYNVM--EL-HS-----HC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       154 ~~~~dg~v~i~d~~--~~-~~-----~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      .. .++.|.+||+.  ++ ..     ..     ......++++++|++.++...++. |.+||. +++.+..+...  ..
T Consensus       197 ~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~--~~  271 (326)
T 2ghs_A          197 DT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVP--GK  271 (326)
T ss_dssp             ET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECS--CS
T ss_pred             EC-CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECC--CC
Confidence            43 36889999985  44 21     11     144678999999998877766666 578998 67776666432  23


Q ss_pred             eEEEEEee-cCCCcccEEEEEeCC
Q 019672          221 TIFSLSFG-QSMQFQDILVATSSS  243 (337)
Q Consensus       221 ~i~~l~fs-~dg~~~~~las~s~d  243 (337)
                      .+.+++|+ |++.   .|..++..
T Consensus       272 ~~~~~af~g~d~~---~L~vt~~~  292 (326)
T 2ghs_A          272 QTTCPAFIGPDAS---RLLVTSAR  292 (326)
T ss_dssp             BEEEEEEESTTSC---EEEEEEBC
T ss_pred             CcEEEEEecCCCC---EEEEEecC
Confidence            58999999 8887   66555443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.07  E-value=3.2e-08  Score=89.55  Aligned_cols=269  Identities=10%  Similarity=0.028  Sum_probs=160.6

Q ss_pred             EEEEcCCCCEEEEEcC------CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCC-C--CCCCCceEEEEEC
Q 019672           12 FVSFNQDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE-Q--PSLSPRRLCLFNT   82 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~------~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~--~~~~d~~v~iwd~   82 (337)
                      .....||++.+.+...      +.+.++|..+++.+.....+....+.+.++...+....... .  .+..++.|.+||.
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            3456799998877754      34789999999988776543333478888887765553100 0  0002578999999


Q ss_pred             CCCCEEEEEEcCC--------ceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           83 TTGTALRELNFLT--------SILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        83 ~~~~~~~~~~~~~--------~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .+++.+.++....        ....+.++++  .++++.   ++.|.++|+.+++.+.++..+. .   ..+.+.+...+
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~---~~~~P~g~~~~  192 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C---YHIFPTAPDTF  192 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E---EEEEEEETTEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c---ceeecCCCcee
Confidence            9999999887542        3455777664  566664   4789999999999999986532 1   12223222233


Q ss_pred             EEEcCCCCccEEEEEEccC-Ccccc---------cCceE-EEEe-CCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeec-
Q 019672          150 LAVPASTTKGSVLVYNVME-LHSHC---------EAPLA-AIVL-SSNGMYIATASEQGTIIRVFLVSEAT--KSYSFR-  214 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~-~~~~~---------~~~i~-~~~~-s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~-  214 (337)
                      ++.+.   ||.+.+.++.+ ++...         +.++. ..+| .++|+++. .+.+|+ +.+.|+.++.  .+..+. 
T Consensus       193 ~~~~~---DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~v~~~~~~  267 (386)
T 3sjl_D          193 FMHCR---DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAKFLPAVEA  267 (386)
T ss_dssp             EEEET---TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCEECCCEES
T ss_pred             EEECC---CCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcceeecceec
Confidence            33332   66666666654 33211         12221 2355 46886544 566787 5899997654  232221 


Q ss_pred             -------cCCcceeEEEEEeecCCCcccEEEEEeC----------CCcEEEEecCCCcccCCCCccccccccccccccee
Q 019672          215 -------RGTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  277 (337)
Q Consensus       215 -------~~~~~~~i~~l~fs~dg~~~~~las~s~----------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (337)
                             .+..+..+..++++|+++   .|.....          .++|-++|+++.+..++.         .++   ..
T Consensus       268 ~~~~~~~~g~~p~g~q~~a~~~~~~---~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i---------~vg---~~  332 (386)
T 3sjl_D          268 LTEAERADGWRPGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---------EMG---HE  332 (386)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE---------EEE---EE
T ss_pred             cccccccccccCCCcceeeECCCCC---eEEEEeccccccccCCCCCEEEEEECCCCeEEEEE---------ECC---CC
Confidence                   111122233478899998   6666543          246888898776543210         001   11


Q ss_pred             ecccccceeeeeccCCCcccC-EEEEEEe-CCcEEEEEE
Q 019672          278 VLDPADHHVLRNAFPAGVKRA-SVSVITY-NGYFVEYIF  314 (337)
Q Consensus       278 ~w~~~~~~~~~~~~~~~~~~~-~l~~~~~-dg~~~~~~~  314 (337)
                      .|+.          ...++++ +|++.+. +|.+.+++.
T Consensus       333 ~~~l----------avs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          333 IDSI----------NVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             ECEE----------EECSSSSCEEEEEETTTTEEEEEET
T ss_pred             cceE----------EECCCCCeEEEEEcCCCCeEEEEEC
Confidence            2333          2255554 6777665 888887754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=7.5e-07  Score=81.53  Aligned_cols=219  Identities=9%  Similarity=0.100  Sum_probs=131.9

Q ss_pred             CceEEEeCCC-----CcEEEEEee-------CCEEEEEE--------c--cCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           28 DGFKIFDSST-----GRLCYERAV-------GAFSIVEM--------L--YSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        28 ~g~~vw~~~~-----~~~~~~~~~-------~~~~~~~~--------~--~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      +.+.+-|+++     ++.+.....       |+.+.-++        .  .+.+.+.+.+.      .+++|.+.|+.+.
T Consensus        43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l------~s~~I~viD~~t~  116 (462)
T 2ece_A           43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGL------RSSRIYIIDTKPN  116 (462)
T ss_dssp             CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBT------TTCCEEEEECCSC
T ss_pred             CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccC------CCCeEEEEECCCC
Confidence            4567888887     677665432       22222111        2  22445544444      5889999999765


Q ss_pred             ----CEEEEEE---c----C-CceeEEEEcCCeEEEEE--C------CeEEEEECCCCeeeeeecCCCCCce-EEEEeeC
Q 019672           86 ----TALRELN---F----L-TSILAVRLNKKRLVIVL--R------EKTYIYDANTLAILDTIDTVPNLKG-LCAFSPS  144 (337)
Q Consensus        86 ----~~~~~~~---~----~-~~v~~i~~~~~~~~v~~--d------~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~  144 (337)
                          +.+..++   .    . ..-..+.+.++++++..  +      +.|.++|..+++.+.++.....+.. ...+-.+
T Consensus       117 p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~  196 (462)
T 2ece_A          117 PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN  196 (462)
T ss_dssp             TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE
T ss_pred             CCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC
Confidence                5555552   1    1 13345667788876654  3      5899999999999988865433322 1224446


Q ss_pred             CCccEEEEcCC-----------------CCccEEEEEEccCCccccc---C----ceEEEEe--CCCCCEEEEEeC----
Q 019672          145 LNACFLAVPAS-----------------TTKGSVLVYNVMELHSHCE---A----PLAAIVL--SSNGMYIATASE----  194 (337)
Q Consensus       145 ~~~~~la~~~~-----------------~~dg~v~i~d~~~~~~~~~---~----~i~~~~~--s~dg~~lat~s~----  194 (337)
                      |++..++++.-                 ....+|.+||+.+++...+   +    ....+.|  +|+|+++..+++    
T Consensus       197 p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~  276 (462)
T 2ece_A          197 LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK  276 (462)
T ss_dssp             TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred             CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc
Confidence            67777777630                 0258899999998765433   1    2344545  999999888886    


Q ss_pred             -CCcEEEEEEcCCCce--eEee--cc----C--------C--cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          195 -QGTIIRVFLVSEATK--SYSF--RR----G--------T--YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       195 -dg~~i~vwd~~~~~~--~~~~--~~----~--------~--~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                       ....|-+|....|+.  ++.+  ..    +        .  .......|.+||||++  ++++.-..+.|.+||+...
T Consensus       277 ~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf--LYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          277 DLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF--LYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE--EEEEETTTTEEEEEECSST
T ss_pred             CCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE--EEEEeCCCCEEEEEEecCC
Confidence             543355655544431  1111  00    0        0  0123567899999992  4444455689999999744

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.07  E-value=2.6e-07  Score=80.15  Aligned_cols=222  Identities=10%  Similarity=0.036  Sum_probs=137.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEE-EEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            7 SYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLC-YERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      ...+.+++++++|..+++... +++.+||.. ++.. +...  ......+.+..+.++. +...      .++.|..+|.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~i~~~~~  132 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIW-FTQL------NGDRIGKLTA  132 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEE-EEET------TTTEEEEECT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEE-EEcc------CCCeEEEECC
Confidence            356889999999998777664 457899987 5543 2221  1233344444444433 3332      3678999998


Q ss_pred             CCCCEEEEEEcC---CceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           83 TTGTALRELNFL---TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        83 ~~~~~~~~~~~~---~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      . ++.. .+...   ..+.++.+++++ +.++.  ++.|..||. +++... +..........++..++++.+.++..  
T Consensus       133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~--  206 (300)
T 2qc5_A          133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEI--  206 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET--
T ss_pred             C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEcc--
Confidence            7 6544 33222   367888887644 55665  568999998 554432 32222223455667777776665544  


Q ss_pred             CccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          157 TKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       157 ~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      ..+.|.+||. ++....      ...+.+++++++|++.++...++. |..||. +++.. .+........+.+++++++
T Consensus       207 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~  282 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKD  282 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTT
T ss_pred             CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCC
Confidence            3678999998 333211      256889999999997776656666 578998 45432 3322212234788999999


Q ss_pred             CCcccEEEEEeCCCcEEEEec
Q 019672          231 MQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l  251 (337)
                      |+   ++++.. . .|..++.
T Consensus       283 g~---l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          283 GS---VWFALK-C-KIGKLNL  298 (300)
T ss_dssp             SC---EEEECS-S-EEEEEEE
T ss_pred             CC---EEEEcc-C-ceEEeCC
Confidence            98   555554 4 6766664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=1e-08  Score=100.38  Aligned_cols=185  Identities=18%  Similarity=0.099  Sum_probs=114.9

Q ss_pred             CEEEEEcC-CceEEEeCCCCcEEEEEeeCCE-----------EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           20 SGFALSTK-DGFKIFDSSTGRLCYERAVGAF-----------SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        20 ~~la~g~~-~g~~vw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      ..+.+++. +.+.-+|..+|+++...+....           ...........+ +++.      .|+.|..+|.++|+.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v-~v~~------~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKV-YVGA------WDGRLIALDAATGKE  150 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEE-EEEC------TTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEE-EEEc------CCCEEEEEECCCCCE
Confidence            34555554 4478899999999877653210           000111123333 3443      489999999999999


Q ss_pred             EEEEEcC------Ccee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCc-----------------
Q 019672           88 LRELNFL------TSIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK-----------------  136 (337)
Q Consensus        88 ~~~~~~~------~~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~-----------------  136 (337)
                      +-++...      ..+. ...+..+.+++..       ++.|+.||..+++.+..+.......                 
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          151 VWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             EeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            9888764      1221 1223456666654       4789999999999988775432210                 


Q ss_pred             ----------eE---EEEeeCCCccEEEEcCCCCc-------------------cEEEEEEccCCccccc----------
Q 019672          137 ----------GL---CAFSPSLNACFLAVPASTTK-------------------GSVLVYNVMELHSHCE----------  174 (337)
Q Consensus       137 ----------~~---~~~~~~~~~~~la~~~~~~d-------------------g~v~i~d~~~~~~~~~----------  174 (337)
                                +.   ..++.++++..++++..  +                   +.|..+|..+++..-.          
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~--~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd  308 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG--NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD  308 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECC--CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECC--CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence                      00   12334455556655542  2                   2588999998876421          


Q ss_pred             ----CceEEEEeCCCC---CEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          175 ----APLAAIVLSSNG---MYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       175 ----~~i~~~~~s~dg---~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                          .....+....+|   ..++.++.+|. +.++|.++|+.+..+.
T Consensus       309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          309 YTSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred             cccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEecccc
Confidence                112233344477   68899999997 6899999999987764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.06  E-value=3.7e-08  Score=96.42  Aligned_cols=229  Identities=9%  Similarity=0.087  Sum_probs=144.6

Q ss_pred             CCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-C----EEEE-EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVG-A----FSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        18 dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~----~~~~-~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      ++..+.+++.++ +..+|..+|+++...... .    ..+. ......+.+++.+.+.. ...++.|..+|.++|+.+-+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEE
Confidence            355677776555 799999999998776543 1    0100 00001233333322100 01268999999999999987


Q ss_pred             EEcCCce---------------------------------eEEEEcC--CeEEEEECC--------------------eE
Q 019672           91 LNFLTSI---------------------------------LAVRLNK--KRLVIVLRE--------------------KT  115 (337)
Q Consensus        91 ~~~~~~v---------------------------------~~i~~~~--~~~~v~~d~--------------------~i  115 (337)
                      +....+.                                 ..+.+++  +.+++...+                    .|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            7643211                                 1244543  445554422                    49


Q ss_pred             EEEECCCCeeeeeecCCCCC-------ceEEEEeeCCCc---cEEEEcCCCCccEEEEEEccCCccccc---Cc------
Q 019672          116 YIYDANTLAILDTIDTVPNL-------KGLCAFSPSLNA---CFLAVPASTTKGSVLVYNVMELHSHCE---AP------  176 (337)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~la~~~~~~dg~v~i~d~~~~~~~~~---~~------  176 (337)
                      ..+|..+++.+..++...+.       .....+....++   ..++.++  .+|.|.++|..+++.+..   .+      
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCcccc
Confidence            99999999988877653321       111111211233   4566666  489999999999876532   11      


Q ss_pred             -------e------------------------EEEEeCCCCCEEEEEeCC------------------------------
Q 019672          177 -------L------------------------AAIVLSSNGMYIATASEQ------------------------------  195 (337)
Q Consensus       177 -------i------------------------~~~~~s~dg~~lat~s~d------------------------------  195 (337)
                             +                        ..++|+|++.++.+.+.+                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                   1                        156889998888776542                              


Q ss_pred             -------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          196 -------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       196 -------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                   |. |..||+.+|+.+.++..+.   ++....++.++.   .++.++.||.+++||+++++.
T Consensus       444 ~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~~~g~---~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGN---VVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             EEECSSCCCSCCEEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             cccccccCCCCCccE-EEEEeCCCCcEEeecCCCC---CCcCcceEeCCC---EEEEECCCCcEEEEECCCCce
Confidence                         55 6799999999988775432   234455677787   899999999999999988765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=7.1e-08  Score=84.82  Aligned_cols=217  Identities=10%  Similarity=-0.006  Sum_probs=129.6

Q ss_pred             CeEEEEEcCCCCE-EEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672            9 PVFFVSFNQDNSG-FALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus         9 ~v~~~~fs~dg~~-la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      -.....|+|+|+. +.++..+ ++..|+.......+.........+.+..+.+++ ++..      .++.|.+||.. ++
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~-v~~~------~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLV-HCEH------GRRAITRSDAD-GQ  117 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEE-EEET------TTTEEEEECTT-SC
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEE-EEEC------CCCEEEEECCC-CC
Confidence            3567899999994 5566554 478888743322333323334445555555543 3332      25789999986 55


Q ss_pred             EEEEEE-cC----CceeEEEEcCCeEEEEEC--------------------CeEEEEECCCCeeeeeecCCCCCceEEEE
Q 019672           87 ALRELN-FL----TSILAVRLNKKRLVIVLR--------------------EKTYIYDANTLAILDTIDTVPNLKGLCAF  141 (337)
Q Consensus        87 ~~~~~~-~~----~~v~~i~~~~~~~~v~~d--------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (337)
                      ...... ..    ..+.++.+++++.+..+|                    +.|+.||..+++..... ...   ....+
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~---~p~gl  193 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD---HPNGL  193 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES---SEEEE
T ss_pred             EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC---CCcce
Confidence            332211 11    235678888776555532                    45777777655443222 111   22345


Q ss_pred             eeCCCccEEEEcCCCC----ccEEEEEEccCCccc-----c---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          142 SPSLNACFLAVPASTT----KGSVLVYNVMELHSH-----C---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~----dg~v~i~d~~~~~~~-----~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      +++|++..|+++....    .+.|.+||+......     .   ......++++++|++.++ +.+|  |.+||. +++.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g--v~~~~~-~g~~  269 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG--VCVFDS-DGQL  269 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE--EEEECT-TSCE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc--EEEECC-CCCE
Confidence            6677777666654311    268999998754311     0   133567899999995554 4554  579998 5777


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  247 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~  247 (337)
                      +..+....   .+.+++|+|+++   .|..++.++..+
T Consensus       270 ~~~~~~~~---~~~~~~f~~d~~---~L~it~~~~l~~  301 (305)
T 3dr2_A          270 LGHIPTPG---TASNCTFDQAQQ---RLFITGGPCLWM  301 (305)
T ss_dssp             EEEEECSS---CCCEEEECTTSC---EEEEEETTEEEE
T ss_pred             EEEEECCC---ceeEEEEeCCCC---EEEEEcCCeEEE
Confidence            77665332   477899999998   788887765333

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.05  E-value=1.6e-07  Score=80.67  Aligned_cols=171  Identities=13%  Similarity=0.048  Sum_probs=125.4

Q ss_pred             CceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      +++|++.|+.+++.+.++....  ....+.+.++.++++.  ++.+.++|..+++.+.++... .+.+ ..+++++  ..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g-~glt~Dg--~~  118 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDG-WGLATDG--KI  118 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSSC-CEEEECS--SS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCCe-EEEEECC--CE
Confidence            6899999999999999887654  3346778888999988  889999999999999998754 2223 3466654  33


Q ss_pred             EEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-C-
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-T-  217 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~-  217 (337)
                      ++++.  .++.|.++|..+.+....          ..++.+.|. +|+..+....++. |.+.|..+++.+..+..+ . 
T Consensus       119 l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V~vID~~tg~V~~~I~~~g~~  194 (266)
T 2iwa_A          119 LYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-IARISAKDGTLLGWILLPNLR  194 (266)
T ss_dssp             EEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EEEEETTTCCEEEEEECHHHH
T ss_pred             EEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-EEEEECCCCcEEEEEECCCcc
Confidence            44443  368999999988775433          136788888 7765555445555 679999999998887532 1 


Q ss_pred             ---------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          218 ---------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       218 ---------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                               .....+.|+|+|+++  .+++++...+++.+.++...
T Consensus       195 ~~~~~~~~~~~~v~nGIa~~~~~~--~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          195 KKLIDEGFRDIDVLNGIAWDQENK--RIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHTTCTTCCCEEEEEEETTTT--EEEEEETTCSEEEEEEEEEC
T ss_pred             cccccccccccCceEEEEEcCCCC--EEEEECCCCCeEEEEEEecc
Confidence                     012468999999987  36777777888999888654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=4.3e-08  Score=83.44  Aligned_cols=169  Identities=7%  Similarity=-0.046  Sum_probs=120.2

Q ss_pred             ccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeec
Q 019672           55 LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTID  130 (337)
Q Consensus        55 ~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~  130 (337)
                      .++.+.+..+++      .++.|+.+|+++++.+.++ .+...  ..+.+.++.++++.  ++.+.+||..+++.+.++.
T Consensus        61 ~~~~~~Ly~stG------~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           61 VFHQGHFFESTG------HQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEETTEEEEEET------TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             EEECCEEEEEcC------CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            344555555555      4778999999999999888 66654  44888889999988  8899999999999999997


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIR  200 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~  200 (337)
                      .....-   +++++  +..|+.+.  .++.|.++|..+.+...+          ..++.+.|. +|+..|..-.+.. |.
T Consensus       134 ~~~eGw---GLt~D--g~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~-I~  204 (268)
T 3nok_A          134 YSGEGW---GLCYW--NGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD-VL  204 (268)
T ss_dssp             CSSCCC---CEEEE--TTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE-EE
T ss_pred             CCCcee---EEecC--CCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe-EE
Confidence            654433   33444  34555544  378999999998876543          345677776 7765555444554 67


Q ss_pred             EEEcCCCceeEeeccC-----------CcceeEEEEEeecCCCcccEEEEEeC
Q 019672          201 VFLVSEATKSYSFRRG-----------TYPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       201 vwd~~~~~~~~~~~~~-----------~~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                      +.|.++|+.+..+...           ......+.|||+|+++   .|.+++.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~---rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG---RIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC---CEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC---EEEEeCC
Confidence            9999999988776432           0113478999999887   4555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.02  E-value=1.7e-07  Score=79.72  Aligned_cols=164  Identities=9%  Similarity=0.079  Sum_probs=117.5

Q ss_pred             ceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEE
Q 019672           75 RRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (337)
                      ..|+.+|+++++.+.++......  ..+.+..+.++++.  ++.+.+||..+++.+.++......-   +++++  +..|
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~---glt~d--g~~L  139 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW---GLTHN--DQYL  139 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC---CEEEC--SSCE
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce---EEecC--CCEE
Confidence            48999999999999999887655  44778889999988  8899999999999999997654433   33443  3455


Q ss_pred             EEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC---
Q 019672          151 AVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT---  217 (337)
Q Consensus       151 a~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~---  217 (337)
                      +.+.  .++.|.++|..+.+...+          ..++.+.+. +|+..|..-.+.. |.+.|.++|+.+..+....   
T Consensus       140 ~~Sd--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~  215 (262)
T 3nol_A          140 IMSD--GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK-IVRIDPETGKVTGIIDLNGILA  215 (262)
T ss_dssp             EECC--SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EEEECTTTCBEEEEEECTTGGG
T ss_pred             EEEC--CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe-EEEEECCCCcEEEEEECCcCcc
Confidence            5544  267899999998775533          334567776 7765555445555 6899999999887765321   


Q ss_pred             -------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          218 -------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       218 -------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                             .....+.|||+|+++   .|.+++.. -=++|.+
T Consensus       216 ~~~~~~~~~~vlNGIA~dp~~~---~lfVTGK~-Wp~~~ev  252 (262)
T 3nol_A          216 EAGPLPSPIDVLNGIAWDKEHH---RLFVTGKL-WPKVFEI  252 (262)
T ss_dssp             GSCSCCSSCCCEEEEEEETTTT---EEEEEETT-CSEEEEE
T ss_pred             ccccccCcCCceEEEEEcCCCC---EEEEECCC-CCceEEE
Confidence                   112478999999988   67766654 2234443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.01  E-value=1.4e-07  Score=86.27  Aligned_cols=221  Identities=9%  Similarity=0.014  Sum_probs=133.4

Q ss_pred             c--CCCCEEEEEcCC--ceEEEeCCCC----cEEEEEe------eCCE---EEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672           16 N--QDNSGFALSTKD--GFKIFDSSTG----RLCYERA------VGAF---SIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus        16 s--~dg~~la~g~~~--g~~vw~~~~~----~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +  +++++|.+.+..  .+.|+|+.+.    ++....+      ..+.   -.+.+.++. .++...++. .....+.|.
T Consensus        90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-~g~~~g~v~  167 (462)
T 2ece_A           90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-EGEGPGGIL  167 (462)
T ss_dssp             CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-TSCSCCEEE
T ss_pred             CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-CCCCCCeEE
Confidence            7  889998776643  4799998644    3333331      0111   123445555 433332321 112358999


Q ss_pred             EEECCCCCEEEEEEcCC-c---eeEEEEcCCe--EEEEE--------------------CCeEEEEECCCCeeeeeecCC
Q 019672           79 LFNTTTGTALRELNFLT-S---ILAVRLNKKR--LVIVL--------------------REKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~-~---v~~i~~~~~~--~~v~~--------------------d~~i~i~d~~~~~~~~~~~~~  132 (337)
                      +.|.++++.+.++.... +   -.++.+++++  ++++.                    .++|.+||+.+++.+.++...
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999999886432 1   2446666543  33332                    479999999999888888764


Q ss_pred             CCCceE--EEEeeCCCccEEEEcCC----CCccEEEEEEc-------------cCCcccc------------cCceEEEE
Q 019672          133 PNLKGL--CAFSPSLNACFLAVPAS----TTKGSVLVYNV-------------MELHSHC------------EAPLAAIV  181 (337)
Q Consensus       133 ~~~~~~--~~~~~~~~~~~la~~~~----~~dg~v~i~d~-------------~~~~~~~------------~~~i~~~~  181 (337)
                      .....-  +.+.++|++.+..+...    +.+++|.+|..             .+.....            ......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            221222  34555787766554431    02567765433             2211100            13468899


Q ss_pred             eCCCCCEEEEEeCCCcEEEEEEcCC---CceeEeeccCCc---------c---eeEEEEEeecCCCcccEEEEEe
Q 019672          182 LSSNGMYIATASEQGTIIRVFLVSE---ATKSYSFRRGTY---------P---STIFSLSFGQSMQFQDILVATS  241 (337)
Q Consensus       182 ~s~dg~~lat~s~dg~~i~vwd~~~---~~~~~~~~~~~~---------~---~~i~~l~fs~dg~~~~~las~s  241 (337)
                      +||||++|..+......|.++|+.+   .+.+..+..+..         .   ..-..+++||||+   +|.++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk---~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR---RVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS---EEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC---EEEEEc
Confidence            9999999998887555589999863   345555543311         0   0135689999999   888887

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=4.2e-07  Score=76.64  Aligned_cols=180  Identities=12%  Similarity=0.091  Sum_probs=123.3

Q ss_pred             ccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCce--eEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeec
Q 019672           55 LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTID  130 (337)
Q Consensus        55 ~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~  130 (337)
                      .++.+.+...+|.    +....|+..|+++++.+.++..+...  ..+.+..+.++++.  ++.+.+||..+++.+.++.
T Consensus        27 ~~~~~~LyestG~----~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~  102 (243)
T 3mbr_X           27 FYLRGHLYESTGE----TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR  102 (243)
T ss_dssp             EEETTEEEEEECC----TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCEEEEECCC----CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence            3445555444442    12469999999999999999887654  45677889999988  8899999999999999997


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc----------CceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE----------APLAAIVLSSNGMYIATASEQGTIIR  200 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~----------~~i~~~~~s~dg~~lat~s~dg~~i~  200 (337)
                      .....   .+++.+  +..|..+.  .++.|.++|..+.+...+          ..++.+.+. +|+..|..-.+.. |.
T Consensus       103 ~~~~G---wglt~d--g~~L~vSd--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~-I~  173 (243)
T 3mbr_X          103 YPGEG---WALTSD--DSHLYMSD--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR-IA  173 (243)
T ss_dssp             CSSCC---CEEEEC--SSCEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE-EE
T ss_pred             CCCCc---eEEeeC--CCEEEEEC--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe-EE
Confidence            65443   344444  33444444  267899999998776533          345666665 6765555544544 67


Q ss_pred             EEEcCCCceeEeeccCC-----------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          201 VFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       201 vwd~~~~~~~~~~~~~~-----------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      +.|.++|+.+..+....           .....+.||++|+++   .|.+++.. -=++|.+
T Consensus       174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~---~lfVTGK~-wp~~~~v  231 (243)
T 3mbr_X          174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD---RLFVTGKR-WPMLYEI  231 (243)
T ss_dssp             EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT---EEEEEETT-CSEEEEE
T ss_pred             EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC---EEEEECCC-CCcEEEE
Confidence            99999999887764221           113478999999988   66666554 2344444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.96  E-value=5.4e-08  Score=95.50  Aligned_cols=185  Identities=19%  Similarity=0.132  Sum_probs=111.8

Q ss_pred             CCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEE-----------EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           19 NSGFALSTKD-GFKIFDSSTGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        19 g~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      +..+.+++.+ .+.-+|..+|+++...+...-.           ..........+ +++.      .|+.|..+|.++|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v-~v~~------~dg~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKV-YVGV------LDGRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEE-EEEC------TTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEE-EEEc------cCCEEEEEECCCCC
Confidence            3455555554 4789999999998776432100           00011123333 4443      48999999999999


Q ss_pred             EEEEEEcC-C-----cee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCC-CCc---------------
Q 019672           87 ALRELNFL-T-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVP-NLK---------------  136 (337)
Q Consensus        87 ~~~~~~~~-~-----~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~-~~~---------------  136 (337)
                      .+-++... .     .+. .-.+..+.+++..       ++.|+.||..+++.+..+...+ ++.               
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            98877653 1     111 1112345555543       4789999999999887775321 110               


Q ss_pred             ----------e---EEEEeeCCCccEEEEcCCCCcc-------------------EEEEEEccCCccccc----------
Q 019672          137 ----------G---LCAFSPSLNACFLAVPASTTKG-------------------SVLVYNVMELHSHCE----------  174 (337)
Q Consensus       137 ----------~---~~~~~~~~~~~~la~~~~~~dg-------------------~v~i~d~~~~~~~~~----------  174 (337)
                                +   -...+.+++..+++++..  ++                   .|..+|..+++..-.          
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~--~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd  300 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG--NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD  300 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEECC--CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeCC--CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc
Confidence                      0   012344555556666552  44                   499999999876421          


Q ss_pred             ----CceEEEEeCCCCC---EEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          175 ----APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       175 ----~~i~~~~~s~dg~---~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                          .++....+..+|+   .++.++.+|. ++++|.++|+.+...
T Consensus       301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          301 YTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAK  345 (689)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEE
T ss_pred             ccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccc
Confidence                1222222233665   7889999997 689999999988543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=4.7e-07  Score=77.75  Aligned_cols=186  Identities=10%  Similarity=0.006  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCEEEEEc---CCceEEEeCCCCcEEEEEeeCC--EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672           10 VFFVSFNQDNSGFALST---KDGFKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~---~~g~~vw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      -..+.|++|+.++.+.+   .+.++++|+.+++.+.......  .. ..+....+.+..+.-      .++.+.++|..+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~g~~lyv~t~------~~~~v~viD~~t   95 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLLNEKLYQVVW------LKNIGFIYDRRT   95 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEET------TCSEEEEEETTT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEeCCEEEEEEe------cCCEEEEEECCC
Confidence            46899999975555443   2457999999999887764322  11 123334555555554      489999999999


Q ss_pred             CCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCc---eEEEEeeCCCccEEEEcCCCCcc
Q 019672           85 GTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        85 ~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      .+.+.++... ..-..+..+++.++++. +++|.++|..+.+.+..+....++.   ....+.+. ++...+...  .++
T Consensus        96 ~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~--~~~  172 (266)
T 2iwa_A           96 LSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW--QTD  172 (266)
T ss_dssp             TEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TSS
T ss_pred             CcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC--CCC
Confidence            9999999876 44456777777888765 6799999999998888886543211   12233333 344444433  478


Q ss_pred             EEEEEEccCCccccc------------------CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCC
Q 019672          160 SVLVYNVMELHSHCE------------------APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSE  206 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~------------------~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~  206 (337)
                      .|.+.|..+++....                  ...+.|+|+|++++|..++ ..++ +.+.++..
T Consensus       173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~  237 (266)
T 2iwa_A          173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHL  237 (266)
T ss_dssp             EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEec
Confidence            999999998875432                  1358999999987655555 4554 46666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.96  E-value=1.9e-07  Score=92.40  Aligned_cols=229  Identities=13%  Similarity=0.024  Sum_probs=136.1

Q ss_pred             cCCCCEEEEEc-CCc---eEEEe--CC---CCc--EEEEEe----eC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672           16 NQDNSGFALST-KDG---FKIFD--SS---TGR--LCYERA----VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus        16 s~dg~~la~g~-~~g---~~vw~--~~---~~~--~~~~~~----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +|||++++-.. +.+   -.+|.  ..   .++  .+....    .+  .+....++++++.+++.+...  +....+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~--G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG--GSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET--TCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC--CCceEEEE
Confidence            38999877544 333   35664  33   332  222211    12  344566777888888775410  01125799


Q ss_pred             EEECCCCCEEEEEEcCCceeEEEEcCC-eEEEEE-CC--------------eEEEEECCCCee--eeeecCCCCCceEEE
Q 019672           79 LFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-RE--------------KTYIYDANTLAI--LDTIDTVPNLKGLCA  140 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~v~~-d~--------------~i~i~d~~~~~~--~~~~~~~~~~~~~~~  140 (337)
                      +||+.+++.+........+..+.|+++ .++.+. ++              .|++|++.+++.  ...+....++.....
T Consensus       193 v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          193 FVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            999999987654211122346778776 344443 32              389999987652  222333333334667


Q ss_pred             EeeCCCccEEEEcCCC---CccEEEEEEccCC--c-c--c--ccCceEEEEeCCCCCEEEEEeCCCc---EEEEEEcCCC
Q 019672          141 FSPSLNACFLAVPAST---TKGSVLVYNVMEL--H-S--H--CEAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEA  207 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~---~dg~v~i~d~~~~--~-~--~--~~~~i~~~~~s~dg~~lat~s~dg~---~i~vwd~~~~  207 (337)
                      +.++|++.+|++....   ....|.+||+.++  . .  +  +...+.... +|+|+.|+..+.++.   -|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            7788899888766531   1348999999765  3 1  1  113344443 489999988876432   2578999875


Q ss_pred             c-eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          208 T-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       208 ~-~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      . ....+..+ +...+.+++|+ ++.   ++++...|+..+||.++
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~---lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNR---LFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTE---EEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCE---EEEEEEECCEEEEEEEe
Confidence            2 33444332 23457778887 555   88899999998888764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.90  E-value=5.3e-06  Score=73.55  Aligned_cols=185  Identities=9%  Similarity=-0.048  Sum_probs=117.3

Q ss_pred             EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-EEEEECCeEEEEECCCCeeeeeecC
Q 019672           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANTLAILDTIDT  131 (337)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~d~~i~i~d~~~~~~~~~~~~  131 (337)
                      .+..+...+.++..      .++.|..||..+++. ..+.....+.++.+++++ ++++..+.|.+||..+++.......
T Consensus        55 ~~~~~~~~l~~~d~------~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           55 TFDPASGTAWWFNI------LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEETTTTEEEEEEG------GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECS
T ss_pred             eEeCCCCEEEEEEC------CCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeC
Confidence            34444456666654      367999999987753 445566788899887654 5556677899999987765332221


Q ss_pred             CC--CCceEEEEeeCCCccEEEEcCCC----CccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEe-CCCcEEE
Q 019672          132 VP--NLKGLCAFSPSLNACFLAVPAST----TKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATAS-EQGTIIR  200 (337)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~la~~~~~----~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s-~dg~~i~  200 (337)
                      ..  ....+..+..++++.+.+.....    ..+.|..+|  +++...    ....+.++|+|||+.|..+. .++. |.
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-I~  204 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR-LM  204 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE-EE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE-EE
Confidence            11  12345677778888766543210    124566666  333221    14578999999999775554 4555 68


Q ss_pred             EEEcC--CC-ce-----eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          201 VFLVS--EA-TK-----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       201 vwd~~--~~-~~-----~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +||+.  +| +.     +..+..  .......++++++|.   ++++...++.|.+|+.+
T Consensus       205 ~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~---lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          205 RVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGH---IWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSC---EEEEEETTTEEEEECTT
T ss_pred             EEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCC---EEEEEeCCCEEEEECCC
Confidence            99986  66 32     222211  123467899999998   77777777889999873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.85  E-value=1.1e-09  Score=99.40  Aligned_cols=170  Identities=11%  Similarity=0.022  Sum_probs=92.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEc-CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC-Ccc
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLN-KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NAC  148 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~-~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (337)
                      .|+.|..||.++|+.+.++.. .++.+..+. .+.++++.  |+.++.||..+++.+..+.....  .....++.- .+.
T Consensus        17 ~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~~~~sp~~~~~~   93 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--ELVQASPCRSSDG   93 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HHHTTCSCC----
T ss_pred             CCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--cccccCceEecCC
Confidence            389999999999999988876 544433332 33344443  88999999988877655532210  000001110 223


Q ss_pred             EEEEcCCCCccEEEEEEccCCcccccCc-eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSHCEAP-LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~~~~~-i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      .+++++  .++.|..||..+++...+.. -....++|++..+++++.||. |+.||.++|+.+.++...    .....++
T Consensus        94 ~v~~g~--~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~~----~~~~~~~  166 (369)
T 2hz6_A           94 ILYMGK--KQDIWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWNATYF----DYAASLP  166 (369)
T ss_dssp             -CCCCE--EEEEEEEECCC----------------------EEEEEEEEE-EECCCSSSSSCCCEEEEE----EECCBCC
T ss_pred             EEEEEe--CCCEEEEEECCCCcEEEEecCCCcccccccCCEEEEEecCCE-EEEEECCCCCEEEeEecc----cccCccc
Confidence            444444  48999999999988764411 113456778889999999987 589999999987766421    1223344


Q ss_pred             ecCC---CcccEEEEEeCCCcEEEEecCCCc
Q 019672          228 GQSM---QFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       228 s~dg---~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      +++.   .   .+++++.||.|+.||.++++
T Consensus       167 ~~~~~~~~---~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          167 EDDVDYKM---SHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             CCCTTCCC---CEEEEETSCEEEEECTTTCC
T ss_pred             cCCccccc---eEEEECCCCEEEEEECCCCc
Confidence            5432   3   57788999999999987664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.78  E-value=6.6e-08  Score=85.37  Aligned_cols=212  Identities=11%  Similarity=0.106  Sum_probs=126.9

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      +..+..+|..++...++++..|| .+++.+............+..+.+..++++.       .+ |..+|. +++.+..+
T Consensus        24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-------~~-l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGS-------DK-VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSS-------CE-EEEECC-CGGGGGGS
T ss_pred             CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEec-------Cc-EEEECC-CCcEEEEE
Confidence            34556677654444456789999 8888766544333333333444344445554       34 888886 55543322


Q ss_pred             EcCCc-eeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672           92 NFLTS-ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (337)
Q Consensus        92 ~~~~~-v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~  169 (337)
                      ..... .....+..+.+.+++ ++.+..+|.. ++...........  +.++..++++.+.+ +.  .++.|..+|.. +
T Consensus        94 ~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~~~~g~l~v-gt--~~~~l~~~d~~-g  166 (330)
T 3hxj_A           94 DTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAI--YATPIVSEDGTIYV-GS--NDNYLYAINPD-G  166 (330)
T ss_dssp             CC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCC--CSCCEECTTSCEEE-EC--TTSEEEEECTT-S
T ss_pred             ECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCce--eeeeEEcCCCEEEE-Ec--CCCEEEEECCC-C
Confidence            22221 122233466777777 7899999988 7666555433221  22233344555444 33  36889999988 5


Q ss_pred             cccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          170 HSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       170 ~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      +...     ...+.++.++++|...+..   +. +..+| .+++.+..+...  ...+.++...++|.    |..++.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~----l~v~t~~~  235 (330)
T 3hxj_A          167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PDGTEKWNFYAG--YWTVTRPAISEDGT----IYVTSLDG  235 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TTSCEEEEECCS--SCCCSCCEECTTSC----EEEEETTT
T ss_pred             CEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CCCcEEEEEccC--CcceeceEECCCCe----EEEEcCCC
Confidence            5432     2557778888888866544   55 46899 788877666432  23477888888887    66667777


Q ss_pred             cEEEEec
Q 019672          245 SLHVFSP  251 (337)
Q Consensus       245 ~v~iw~l  251 (337)
                      .|..++.
T Consensus       236 gl~~~~~  242 (330)
T 3hxj_A          236 HLYAINP  242 (330)
T ss_dssp             EEEEECT
T ss_pred             eEEEECC
Confidence            8888874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.76  E-value=1.8e-06  Score=73.46  Aligned_cols=177  Identities=9%  Similarity=0.005  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCEEEEEcCC---ceEEEeCCCCcEEEEEeeCC-EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALSTKD---GFKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~---g~~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .-.+.|+ ++.++.+.+.+   .++++|+++++.+....... ..-..+....+.+..+..      .++.+.++|.++.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~  117 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECccC
Confidence            3567888 66655544443   47999999999887765432 111123334566655554      4899999999999


Q ss_pred             CEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC---ceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           86 TALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL---KGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.+.++.....=.++..+.+.++++. +++|.++|..+.+.+..+....+.   ..+..+.+. ++.+.+..-  .++.|
T Consensus       118 ~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w--~~~~I  194 (262)
T 3nol_A          118 RQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW--QTNKI  194 (262)
T ss_dssp             CEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TSSEE
T ss_pred             cEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc--cCCeE
Confidence            99999988765567777777777665 568999999999988887653221   112223332 344444333  36789


Q ss_pred             EEEEccCCccccc-----------------CceEEEEeCCCCCEEEEEeCCC
Q 019672          162 LVYNVMELHSHCE-----------------APLAAIVLSSNGMYIATASEQG  196 (337)
Q Consensus       162 ~i~d~~~~~~~~~-----------------~~i~~~~~s~dg~~lat~s~dg  196 (337)
                      .+.|..+++....                 .-.+.|||+|+++.|...+..=
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            9999888775321                 2458999999888777666543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.73  E-value=1.1e-06  Score=86.11  Aligned_cols=227  Identities=11%  Similarity=0.127  Sum_probs=140.8

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-C----EEEE--EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVG-A----FSIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~----~~~~--~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      +..+++++.++ +..+|..+|+++...... +    ..+.  -... .+.+ +++.+......++.|..||.++|+.+-+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKV-VIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEE-EECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEE-EEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            45677777655 699999999998776532 1    0000  0011 2333 3332100001378999999999999877


Q ss_pred             EEcC-C-c-----------------------------e-eEEEEcC--CeEEEEE-CC-------------------eEE
Q 019672           91 LNFL-T-S-----------------------------I-LAVRLNK--KRLVIVL-RE-------------------KTY  116 (337)
Q Consensus        91 ~~~~-~-~-----------------------------v-~~i~~~~--~~~~v~~-d~-------------------~i~  116 (337)
                      +... . +                             + ..+.+++  +.+++.. ++                   .|.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            6531 0 0                             0 1345554  4455544 32                   399


Q ss_pred             EEECCCCeeeeeecCCCCC---------ceEEEEeeCCC-ccEEEEcCCCCccEEEEEEccCCccccc---Cc-------
Q 019672          117 IYDANTLAILDTIDTVPNL---------KGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCE---AP-------  176 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~la~~~~~~dg~v~i~d~~~~~~~~~---~~-------  176 (337)
                      .+|..+++.+..++...+.         ..+..+..++. ...++.+.  .+|.+.++|..+++.+..   .+       
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEecccccccccccccc
Confidence            9999999998877653221         11112222221 12566665  589999999998876511   00       


Q ss_pred             ----------------------------------eEEEEeCCCCCEEEEEeC----------------------------
Q 019672          177 ----------------------------------LAAIVLSSNGMYIATASE----------------------------  194 (337)
Q Consensus       177 ----------------------------------i~~~~~s~dg~~lat~s~----------------------------  194 (337)
                                                        -..++|+|+..++.+.+.                            
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                              112789998888777643                            


Q ss_pred             -----------------CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          195 -----------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       195 -----------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                       +|. |+.||+.+|+.+.++..+.   ++..-.++..+.   +++.++.||.++.||.++++.
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---lvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGN---LVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             cccCcccccCCCCCCCccee-EEEEECCCCCeEeEccCCC---CccCccceECCC---EEEEECCCCcEEEEECCCCcc
Confidence                             255 6899999999988775432   223335666777   899999999999999998765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.64  E-value=5.9e-06  Score=81.07  Aligned_cols=194  Identities=9%  Similarity=0.057  Sum_probs=112.7

Q ss_pred             EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEEEEE-C-------------C
Q 019672           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-R-------------E  113 (337)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~v~~-d-------------~  113 (337)
                      +....++++++.++++....  +....+|++||+++++.+...........+.| +.+.++.+. +             .
T Consensus       131 l~~~~~SpDg~~lAy~~~~~--G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLA--GSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECS--SCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEECCCCCEEEEEEecC--CCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCc
Confidence            44456777888888765210  02346899999999986543111111223445 455666665 3             2


Q ss_pred             eEEEEECCCCee--eeeecCCC-CCceEEEEeeCCCccEEEEcCC--CCccEEEEEEccCCcc----c--ccCceEEEEe
Q 019672          114 KTYIYDANTLAI--LDTIDTVP-NLKGLCAFSPSLNACFLAVPAS--TTKGSVLVYNVMELHS----H--CEAPLAAIVL  182 (337)
Q Consensus       114 ~i~i~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~--~~dg~v~i~d~~~~~~----~--~~~~i~~~~~  182 (337)
                      .|++|++.+.+.  ...+.... ++.....+..+|++.+|+....  .....|.++|+.++..    +  +....... +
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~  287 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-V  287 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-E
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-E
Confidence            499999987642  22222222 2334566677888888765431  1235899999876531    1  11333343 6


Q ss_pred             CCCCCEEEEEeC-C---CcEEEEEEcCCCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC---cEEEEecCC
Q 019672          183 SSNGMYIATASE-Q---GTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGF  253 (337)
Q Consensus       183 s~dg~~lat~s~-d---g~~i~vwd~~~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg---~v~iw~l~~  253 (337)
                      +++|..|+..+. +   +. |.++|+.+++.  ...+..+. .. +.  .|+++++   +|+....++   .|++|+++.
T Consensus       288 ~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~~~-~~-~~--~~s~~g~---~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIPER-QQ-VL--TVHSGSG---YLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEECCC-SS-CE--EEEEETT---EEEEEEEETTEEEEEEECTTS
T ss_pred             eccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEecCC-CC-EE--EEEEECC---EEEEEEEECCeeEEEEEECCC
Confidence            677666554443 3   44 56899987654  23443222 22 33  8999998   777665544   688888864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.62  E-value=2.4e-05  Score=71.74  Aligned_cols=172  Identities=8%  Similarity=-0.012  Sum_probs=103.6

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CC--eEEEEECCCCeeeeee---cCCCCCceEEEEeeC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-RE--KTYIYDANTLAILDTI---DTVPNLKGLCAFSPS  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~--~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~  144 (337)
                      .++.|+.||..+++............ ++++++.  ++++. ++  .|.+++...+.....+   .. .......+++.+
T Consensus       150 ~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~  227 (409)
T 3hrp_A          150 DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALD  227 (409)
T ss_dssp             TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEEC
T ss_pred             CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEe
Confidence            36899999998877655444433334 7777654  44544 23  7999988655433333   11 011122334555


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCcccc------c-----CceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEe
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSHC------E-----APLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYS  212 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~-----~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~  212 (337)
                      |++..|.++.  .++.|..||..+.....      .     .|.+.++|+|+ +.++++-+..++ |+.|+.... . ..
T Consensus       228 p~~g~lyv~d--~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~-I~~~~~~g~-~-~~  302 (409)
T 3hrp_A          228 ETEEWLYFVD--SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS-VYKITPDGE-C-EW  302 (409)
T ss_dssp             TTSSEEEEEC--TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE-EEEECTTCC-E-EE
T ss_pred             CCCCeEEEEE--CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE-EEEEecCCC-E-EE
Confidence            6333444444  47899999987654211      1     12239999995 555555555665 688987543 2 22


Q ss_pred             ec-cC----Cc--------ceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCCC
Q 019672          213 FR-RG----TY--------PSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFA  254 (337)
Q Consensus       213 ~~-~~----~~--------~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~~  254 (337)
                      +. ..    ..        -.....++|+|+|+   ++++-+ .++.|+.|++..+
T Consensus       303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGN---FYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---EEEEETTTTCEEEEEETTTT
T ss_pred             EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC---EEEEeCCCCCEEEEEECCCC
Confidence            21 10    00        12368899999999   888888 8899999997544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.60  E-value=4.2e-06  Score=81.74  Aligned_cols=184  Identities=18%  Similarity=0.119  Sum_probs=110.1

Q ss_pred             CEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEE-----------EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           20 SGFALSTKD-GFKIFDSSTGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        20 ~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      ..+.+++.+ .+.-+|..+|+++...+...-.           ........+.+ +++.      .|+.|..+|.++|+.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~------~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKV-YVGT------LDGRLIALDAKTGKA  139 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEE-EEEC------TTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEE-EEEc------CCCEEEEEECCCCCE
Confidence            344555444 4688999999998776432100           00001122333 3443      489999999999999


Q ss_pred             EEEEEcCC-----cee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCC-CCce----------------
Q 019672           88 LRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVP-NLKG----------------  137 (337)
Q Consensus        88 ~~~~~~~~-----~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~-~~~~----------------  137 (337)
                      +-++....     .+. .-.+..+.+++..       ++.|+.+|..+++.+.++...+ .+..                
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            88776531     111 1112345555543       3789999999999988775421 1110                


Q ss_pred             ------------EEEEeeCCCccEEEEcCCCCcc-------------------EEEEEEccCCccccc------------
Q 019672          138 ------------LCAFSPSLNACFLAVPASTTKG-------------------SVLVYNVMELHSHCE------------  174 (337)
Q Consensus       138 ------------~~~~~~~~~~~~la~~~~~~dg-------------------~v~i~d~~~~~~~~~------------  174 (337)
                                  -...+.+++..+++++..  ++                   .|..+|..+++..-.            
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~--~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTG--NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECC--CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCC--CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                        012334444445555542  33                   488899998876421            


Q ss_pred             --CceEEEEeCCCCC---EEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          175 --APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       175 --~~i~~~~~s~dg~---~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                        .+.....+..+|+   .++.++.+|. +.++|..+|+.+...
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAE  340 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEeccc
Confidence              2233333334675   6888999997 589999999988544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=2.9e-06  Score=72.23  Aligned_cols=161  Identities=8%  Similarity=-0.035  Sum_probs=112.0

Q ss_pred             CEEEEEEcCCc--eeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           86 TALRELNFLTS--ILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        86 ~~~~~~~~~~~--v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +.+.++.+...  ...+.++.+.+++++  ++.|+++|+.+++.+.++ ......+ ..+++.++..+.++-   .++.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~Fg-eGit~~g~~Ly~ltw---~~~~v  118 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFA-EGLASDGERLYQLTW---TEGLL  118 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCE-EEEEECSSCEEEEES---SSCEE
T ss_pred             EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcce-eEEEEeCCEEEEEEc---cCCEE
Confidence            34567776653  478899999999888  668999999999998887 4443322 345565555454433   47999


Q ss_pred             EEEEccCCccccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce---eEEEEEeecCCCcccE
Q 019672          162 LVYNVMELHSHCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS---TIFSLSFGQSMQFQDI  236 (337)
Q Consensus       162 ~i~d~~~~~~~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~---~i~~l~fs~dg~~~~~  236 (337)
                      .+||..+.+.+.+  .+-....+.+||+.|+.+..+++ |.++|.++.+.+.++.-+....   .++.|.|. +|+   .
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---l  193 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTM-LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---I  193 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---E
T ss_pred             EEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCE-EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---E
Confidence            9999999887644  11112233367888887776665 6899999999887775432222   35677877 777   6


Q ss_pred             EEEEeCCCcEEEEecCCCcc
Q 019672          237 LVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~~  256 (337)
                      ++..-.++.|.+.|.++++-
T Consensus       194 yanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          194 YANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             EEEETTCSEEEEECTTTCBE
T ss_pred             EEEECCCCeEEEEeCCCCcE
Confidence            66666788999999887653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.60  E-value=2.3e-06  Score=77.20  Aligned_cols=247  Identities=9%  Similarity=-0.046  Sum_probs=143.6

Q ss_pred             ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCC-CC--CCCCCceEEEEECCCCCEEEEEEcC--------Cce
Q 019672           29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAG-EQ--PSLSPRRLCLFNTTTGTALRELNFL--------TSI   97 (337)
Q Consensus        29 g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~d~~v~iwd~~~~~~~~~~~~~--------~~v   97 (337)
                      .+.++|.++++.+.....+....+.+.++...+.+...+ ..  .+..+++|.+||+.+++.+.++..+        ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            567999999999877654333367777887776665420 00  0013689999999999999998765        234


Q ss_pred             eEEEEcCC--eEEEEE---CCeEEE--EECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC--
Q 019672           98 LAVRLNKK--RLVIVL---REKTYI--YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--  168 (337)
Q Consensus        98 ~~i~~~~~--~~~v~~---d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~--  168 (337)
                      ..+.++++  .++++.   ++.+.+  +|+.+   +.++.....    ..+.+.+...+++.+   .||.+.+.|+.+  
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~---~dg~~~~vd~~~~~  196 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGS---CPASLAASDLAAAP  196 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCC---CTTSCEEEECCSSC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEc---CCCCEEEEECcccc
Confidence            56777765  466665   357888  88876   455543211    122333333333322   478888888876  


Q ss_pred             ---Cccc---------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc--eeEeeccC--------CcceeEEEEE
Q 019672          169 ---LHSH---------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRG--------TYPSTIFSLS  226 (337)
Q Consensus       169 ---~~~~---------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~--~~~~~~~~--------~~~~~i~~l~  226 (337)
                         ++..         -..|.   + ++++..++..+. ++ +.+.|+.+++  .+..+...        ..+.....++
T Consensus       197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence               3321         01344   3 566666666666 77 5789986543  22222111        0011111268


Q ss_pred             eecCCCcccEEEEEeC---------CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCccc
Q 019672          227 FGQSMQFQDILVATSS---------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR  297 (337)
Q Consensus       227 fs~dg~~~~~las~s~---------dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  297 (337)
                      |+||++   .|.++..         ++.+.++|+.+.+...+..         ++.   .-|          .+.+.+++
T Consensus       271 ~s~dg~---~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~---------vg~---~p~----------gi~~s~Dg  325 (368)
T 1mda_H          271 KLKNTD---GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------NGH---DSD----------AIIAAQDG  325 (368)
T ss_dssp             EETTTT---EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------EEE---EEC----------EEEECCSS
T ss_pred             EcCCCC---EEEEEeccccCcccccCCCEEEEECCCCeEEEEEE---------CCC---Ccc----------eEEECCCC
Confidence            999998   6666533         2457799998765433100         000   011          12235566


Q ss_pred             CEEEEEEe--CCcEEEEEEec
Q 019672          298 ASVSVITY--NGYFVEYIFSI  316 (337)
Q Consensus       298 ~~l~~~~~--dg~~~~~~~~~  316 (337)
                      +++++.+.  ++.|.++++.+
T Consensus       326 ~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          326 ASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             SCEEEEEETTTTEEEEEESSS
T ss_pred             CEEEEEccCCCCeEEEEECCC
Confidence            76666655  89999987643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.59  E-value=1.1e-05  Score=77.33  Aligned_cols=186  Identities=8%  Similarity=0.036  Sum_probs=107.4

Q ss_pred             EEEEEcC-C-ceEEEeC-CCCcEEEEEeeCCEE-----------EEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           21 GFALSTK-D-GFKIFDS-STGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        21 ~la~g~~-~-g~~vw~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      .+.+++. + .+.-+|. .+|+++.........           .......... ++++.      .|+.|..+|.++|+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~------~dg~l~alD~~tG~  136 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ-IVKKQ------ANGHLLALDAKTGK  136 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE-EEEEC------TTSEEEEEETTTCC
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE-EEEEe------CCCEEEEEECCCCC
Confidence            4445554 4 4788999 899988776432100           0001112233 34443      38899999999999


Q ss_pred             EEEEEEcCC-----cee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCc-----------------
Q 019672           87 ALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK-----------------  136 (337)
Q Consensus        87 ~~~~~~~~~-----~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~-----------------  136 (337)
                      .+-+.....     .+. .-.+..+.+++..       ++.|+.+|..+++.+.++.......                 
T Consensus       137 ~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~  216 (571)
T 2ad6_A          137 INWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ  216 (571)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred             EEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence            988776433     221 1122355666654       4799999999999887765432110                 


Q ss_pred             ----------------e--E-EEEeeCCCccEEEEcCCC----------C----ccEEEEEEccCCccccc---------
Q 019672          137 ----------------G--L-CAFSPSLNACFLAVPAST----------T----KGSVLVYNVMELHSHCE---------  174 (337)
Q Consensus       137 ----------------~--~-~~~~~~~~~~~la~~~~~----------~----dg~v~i~d~~~~~~~~~---------  174 (337)
                                      +  . ..++.+++...+..+...          .    .+.|..+|..+++..-.         
T Consensus       217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~  296 (571)
T 2ad6_A          217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW  296 (571)
T ss_dssp             SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred             cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence                            0  0 012223333333333210          0    13688889888775421         


Q ss_pred             ------CceEEEEeCCCCC---EEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          175 ------APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       175 ------~~i~~~~~s~dg~---~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                            .++ -+...++|+   .++.++.+|. +.++|..+|+.+..++.
T Consensus       297 d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          297 DFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             CCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             ccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence                  112 122234774   5778888987 58999999998877643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.59  E-value=5.2e-06  Score=78.58  Aligned_cols=172  Identities=9%  Similarity=-0.032  Sum_probs=119.8

Q ss_pred             CCceEEEEECCCCCEEEEEEc--CCceeEEEE----cCCeEEEEE-------------------CCeEEEEECCCCeeee
Q 019672           73 SPRRLCLFNTTTGTALRELNF--LTSILAVRL----NKKRLVIVL-------------------REKTYIYDANTLAILD  127 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~--~~~v~~i~~----~~~~~~v~~-------------------d~~i~i~d~~~~~~~~  127 (337)
                      .+++|.+-|+.+.+....++.  ......+.+    +..+++++.                   ++.+.+.|..+++...
T Consensus       110 ~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~  189 (595)
T 1fwx_A          110 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  189 (595)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE
T ss_pred             CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE
Confidence            577899999999998775544  346777776    235566663                   2479999999999999


Q ss_pred             eecCCCCCceEEEEeeCCCccEEEEcCCCC------------------------------------ccEEEEEEccC--C
Q 019672          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTT------------------------------------KGSVLVYNVME--L  169 (337)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------------------dg~v~i~d~~~--~  169 (337)
                      ++....++.++ ++  ++++.+++++....                                    -+.|.|.|..+  +
T Consensus       190 qI~Vgg~pd~~-~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~  266 (595)
T 1fwx_A          190 QVLVSGNLDNC-DA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  266 (595)
T ss_dssp             EEEESSCCCCE-EE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC
T ss_pred             EEEeCCCccce-EE--CCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC
Confidence            98765565554 33  44566666554321                                    12477788776  3


Q ss_pred             cc-ccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc------------eeEeeccCCcceeEEEEEeecCCC
Q 019672          170 HS-HCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------------KSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       170 ~~-~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~------------~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +. ...    ....++.++|||++++.++.....+.++|+.+.+            ...+...|.   ....++|+|||.
T Consensus       267 ~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---gP~h~aF~~dG~  343 (595)
T 1fwx_A          267 SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---GPLHTAFDGRGN  343 (595)
T ss_dssp             CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---CEEEEEECTTSE
T ss_pred             ceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC---CcceEEECCCCe
Confidence            32 111    4567899999999888877544446899998653            233443332   256789999997


Q ss_pred             cccEEEEEeCCCcEEEEecCC
Q 019672          233 FQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~  253 (337)
                         .+.+.-.|+.|-+||+++
T Consensus       344 ---aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          344 ---AYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ---EEEEETTTTEEEEEEHHH
T ss_pred             ---EEEEEecCCcEEEEEhhH
Confidence               888889999999999976

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.59  E-value=2.1e-06  Score=75.62  Aligned_cols=212  Identities=11%  Similarity=0.038  Sum_probs=127.0

Q ss_pred             CCEEEEEc-CCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC-c
Q 019672           19 NSGFALST-KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-S   96 (337)
Q Consensus        19 g~~la~g~-~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~-~   96 (337)
                      +..+.+|+ ++++..||.. ++..............+..+.+..++++.      .++.|..+|.. ++.+..+.... .
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt------~~~~l~~~d~~-g~~~~~~~~~~~~  178 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS------NDNYLYAINPD-GTEKWRFKTNDAI  178 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC------TTSEEEEECTT-SCEEEEEECSSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc------CCCEEEEECCC-CCEeEEEecCCCc
Confidence            34456666 4568899988 77665544322111111122222233443      36899999998 88777776544 4


Q ss_pred             eeEEEEc-CCeEEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-
Q 019672           97 ILAVRLN-KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-  174 (337)
Q Consensus        97 v~~i~~~-~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-  174 (337)
                      +.++..+ ...+.+++ +.+..+| .+++.+..+.....  .+.++..++++.+.+...   ++.|..+|.. ++.... 
T Consensus       179 ~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~--~~~~~~~~~~g~l~v~t~---~~gl~~~~~~-g~~~~~~  250 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYW--TVTRPAISEDGTIYVTSL---DGHLYAINPD-GTEKWRF  250 (330)
T ss_dssp             CSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSC--CCSCCEECTTSCEEEEET---TTEEEEECTT-SCEEEEE
T ss_pred             eeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCc--ceeceEECCCCeEEEEcC---CCeEEEECCC-CCEeEEe
Confidence            5556664 45566777 9999999 77776666554322  233444455555544332   5667777743 332211 


Q ss_pred             ----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          175 ----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       175 ----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                          ..+.++.+.++|+ |..++.+|. +..+|. +++.+..+...  ...+.++...++|+    |..++.+|.+++..
T Consensus       251 ~~~~~~~~~~~~~~~g~-l~v~t~~gg-l~~~d~-~g~~~~~~~~~--~~~~~~~~~d~~g~----l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          251 KTGKRIESSPVIGNTDT-IYFGSYDGH-LYAINP-DGTEKWNFETG--SWIIATPVIDENGT----IYFGTRNGKFYALF  321 (330)
T ss_dssp             ECSSCCCSCCEECTTSC-EEEECTTCE-EEEECT-TSCEEEEEECS--SCCCSCCEECTTCC----EEEECTTSCEEEEE
T ss_pred             eCCCCccccceEcCCCe-EEEecCCCC-EEEECC-CCcEEEEEEcC--CccccceEEcCCCE----EEEEcCCCeEEEEe
Confidence                2344566777775 556777776 468895 77777666432  23466777878886    77799999999988


Q ss_pred             cCCCc
Q 019672          251 PGFAI  255 (337)
Q Consensus       251 l~~~~  255 (337)
                      .+...
T Consensus       322 ~~~~~  326 (330)
T 3hxj_A          322 NLEHH  326 (330)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            66543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.58  E-value=5.5e-06  Score=79.41  Aligned_cols=227  Identities=11%  Similarity=0.072  Sum_probs=134.9

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC----EEEE-E-EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGA----FSIV-E-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      +..+.+++.++ +..+|..+|+++.......    ..+. . .. ..+.+ +++........++.|..+|.++|+.+-++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEE-EEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            44666676555 6899999999887654321    0100 0 01 12333 33331000002689999999999998877


Q ss_pred             EcCCce---------------------------------------eEEEEcC--CeEEEEEC-----------------C
Q 019672           92 NFLTSI---------------------------------------LAVRLNK--KRLVIVLR-----------------E  113 (337)
Q Consensus        92 ~~~~~v---------------------------------------~~i~~~~--~~~~v~~d-----------------~  113 (337)
                      ....+.                                       ..+.+++  +.+++...                 +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            653321                                       1133433  34444442                 2


Q ss_pred             eEEEEECCCCeeeeeecCCCCC-------ceEEEEeeCCCc---cEEEEcCCCCccEEEEEEccCCccccc---C-----
Q 019672          114 KTYIYDANTLAILDTIDTVPNL-------KGLCAFSPSLNA---CFLAVPASTTKGSVLVYNVMELHSHCE---A-----  175 (337)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~la~~~~~~dg~v~i~d~~~~~~~~~---~-----  175 (337)
                      .|..+|..+++.+..++...+.       .....+....++   ..++.+.  .+|.+.++|..+++.+..   .     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccc
Confidence            5999999999988777643211       111111211234   2455555  489999999988875421   1     


Q ss_pred             ----------ce--------------------------EEEEeCCCCCEEEEEeC-------------------------
Q 019672          176 ----------PL--------------------------AAIVLSSNGMYIATASE-------------------------  194 (337)
Q Consensus       176 ----------~i--------------------------~~~~~s~dg~~lat~s~-------------------------  194 (337)
                                ++                          ..++++|+..++...+.                         
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                      11                          24678888777766542                         


Q ss_pred             ------------CCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          195 ------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       195 ------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                  +|. +..||+.+|+.+.++..+.   .+.+..+...+.   .+..++.||.|+.||.++++.
T Consensus       431 ~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg---~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGG---LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEECTTSTTSCCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eccCccccCCCCCCe-EEEEECCCCCEEEEecCCC---CccceeEEECCC---EEEEEcCCCeEEEEECCCCCE
Confidence                        355 5799999999888775332   122222333455   788899999999999987764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.55  E-value=3.2e-05  Score=67.67  Aligned_cols=185  Identities=10%  Similarity=-0.011  Sum_probs=108.6

Q ss_pred             EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeee
Q 019672           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDT  128 (337)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~  128 (337)
                      ..+..+.+.+++++.      .++.|..|+. +++..........+..+.+++++ ++++.  ++.|.+|+.. ++....
T Consensus        50 p~~~~~g~~l~~~d~------~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~  121 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDL------VGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL  121 (305)
T ss_dssp             EEEEGGGTEEEEEET------TTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CeEeCCCCEEEEEEC------CCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence            445556676666654      4789999998 45533222334567889998765 44454  3589999985 443221


Q ss_pred             ecCCCCC--ceEEEEeeCCCccEEEEc----CC-----------CCccEEEEEEccCCccc---ccCceEEEEeCCCCCE
Q 019672          129 IDTVPNL--KGLCAFSPSLNACFLAVP----AS-----------TTKGSVLVYNVMELHSH---CEAPLAAIVLSSNGMY  188 (337)
Q Consensus       129 ~~~~~~~--~~~~~~~~~~~~~~la~~----~~-----------~~dg~v~i~d~~~~~~~---~~~~i~~~~~s~dg~~  188 (337)
                      .......  .....+..++++.+.++-    ..           ...+.|..+|..+++..   .....+.++|+|||+.
T Consensus       122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~  201 (305)
T 3dr2_A          122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQT  201 (305)
T ss_dssp             ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSE
T ss_pred             EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCE
Confidence            1111110  112235566777777652    10           01256778887655432   1245688999999998


Q ss_pred             EEEEeCC------CcEEEEEEcCCCceeE---eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          189 IATASEQ------GTIIRVFLVSEATKSY---SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       189 lat~s~d------g~~i~vwd~~~~~~~~---~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      |..+...      +. |++|++..+. +.   .+... .......++++++|+   +.++. .+ .|++|+.+
T Consensus       202 lyv~~~~~~~~~~~~-i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~---lwv~~-~~-gv~~~~~~  266 (305)
T 3dr2_A          202 LYVSQTPEQGHGSVE-ITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGW---LWSSS-GT-GVCVFDSD  266 (305)
T ss_dssp             EEEEECCC---CCCE-EEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSC---EEECC-SS-EEEEECTT
T ss_pred             EEEEecCCcCCCCCE-EEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCC---EEEec-CC-cEEEECCC
Confidence            8777665      44 6899987654 21   11110 112245688999998   55544 44 49999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.51  E-value=1.7e-05  Score=66.74  Aligned_cols=162  Identities=13%  Similarity=0.075  Sum_probs=110.4

Q ss_pred             CEEEEEEcCC--ceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           86 TALRELNFLT--SILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        86 ~~~~~~~~~~--~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      +.+.++.|..  -...+.|+++.++.++    .+.|+.+|+.+++.+..+..+....+ ..+...++.-+.++ -  .++
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~lt-w--~~~   85 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQLT-W--RNH   85 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEE-S--SSS
T ss_pred             EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEEE-e--eCC
Confidence            3566777765  3568999998888887    24899999999999998876554433 23444444434433 3  479


Q ss_pred             EEEEEEccCCccccc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcce---eEEEEEeecCCCcc
Q 019672          160 SVLVYNVMELHSHCE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS---TIFSLSFGQSMQFQ  234 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~---~i~~l~fs~dg~~~  234 (337)
                      .+.+||..+.+...+  .+-....+.+||+.|..+..+++ |.++|..+.+.+.++.-+.+..   .++-|.+. +|+  
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~--  161 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE--  161 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE--
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCe-EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE--
Confidence            999999999886644  11122333456777776666666 6899999999887775432222   35666765 776  


Q ss_pred             cEEEEEeCCCcEEEEecCCCcc
Q 019672          235 DILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~  256 (337)
                       .++..-.+..|.+.|.++++-
T Consensus       162 -lyanvw~s~~I~vIDp~tG~V  182 (243)
T 3mbr_X          162 -LLANVWLTSRIARIDPASGKV  182 (243)
T ss_dssp             -EEEEETTTTEEEEECTTTCBE
T ss_pred             -EEEEECCCCeEEEEECCCCCE
Confidence             666665778999999887653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.00037  Score=59.44  Aligned_cols=223  Identities=4%  Similarity=-0.059  Sum_probs=124.6

Q ss_pred             CCEEEEEcCCceEEEeCCCCcE-------EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           19 NSGFALSTKDGFKIFDSSTGRL-------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        19 g~~la~g~~~g~~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      |.+|..+..+.++.++++....       +..........+.+.+..+.+.++..      ..+.|..+|+..+.....+
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC------CCCEEEEEecCCCCcEEEE
Confidence            3455555555677778765432       12211122334455555556655554      3789999999766543333


Q ss_pred             EcC-CceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEE
Q 019672           92 NFL-TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYN  165 (337)
Q Consensus        92 ~~~-~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d  165 (337)
                      ... .....+++++  +.++++.  .+.|.++++........+...  ......+..++++..+..+... ..+.|..++
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~--~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC--CCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            222 3567888875  4566665  568999998643222122211  1123344555543344333321 146888888


Q ss_pred             ccCCcc--cc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE
Q 019672          166 VMELHS--HC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT  240 (337)
Q Consensus       166 ~~~~~~--~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~  240 (337)
                      +.....  ..   ....+.++++|++.+|..+......|.++|.........+....   ....|+.. ++.   .+++.
T Consensus       153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~---~P~gi~~d-~~~---lyva~  225 (267)
T 1npe_A          153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKN---LYYTD  225 (267)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTE---EEEEE
T ss_pred             cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC---CceEEEEe-CCE---EEEEE
Confidence            753321  11   14578999999887776666544447899987544332222211   23456654 343   55555


Q ss_pred             eCCCcEEEEecCCCcc
Q 019672          241 SSSGSLHVFSPGFAIN  256 (337)
Q Consensus       241 s~dg~v~iw~l~~~~~  256 (337)
                      ...+.|.++|..+++.
T Consensus       226 ~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          226 WKTNSVIAMDLAISKE  241 (267)
T ss_dssp             TTTTEEEEEETTTTEE
T ss_pred             CCCCeEEEEeCCCCCc
Confidence            5668999999876543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.46  E-value=2.9e-05  Score=73.50  Aligned_cols=231  Identities=9%  Similarity=0.010  Sum_probs=141.1

Q ss_pred             CCCCEEEEEcCCc--eEEEeCCCCcEEE--EEe-eCCEEEEEE-c-cCCCEEEEEeCCCC-----------CCCCCceEE
Q 019672           17 QDNSGFALSTKDG--FKIFDSSTGRLCY--ERA-VGAFSIVEM-L-YSSSLLAIVGAGEQ-----------PSLSPRRLC   78 (337)
Q Consensus        17 ~dg~~la~g~~~g--~~vw~~~~~~~~~--~~~-~~~~~~~~~-~-~~~~~~~~~~~g~~-----------~~~~d~~v~   78 (337)
                      +||+++.+...+.  +.+.|+++++...  +.. ..+...+.+ . ++..++...+-...           +...++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            5999987766543  7899999998654  332 233334444 3 55666544421100           012356899


Q ss_pred             EEECCCCCEEEEEEcCCceeEEEEcCC--eEEEEE--C-------------------------------------CeEEE
Q 019672           79 LFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--R-------------------------------------EKTYI  117 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~~--d-------------------------------------~~i~i  117 (337)
                      +.|.++.+.+.++.....--.+.++++  .++++.  .                                     +.|.|
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            999999988888876444444445433  233332  1                                     23677


Q ss_pred             EECCC--Cee-eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc------------ccc----CceE
Q 019672          118 YDANT--LAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------------HCE----APLA  178 (337)
Q Consensus       118 ~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~------------~~~----~~i~  178 (337)
                      .|..+  ++. +..+....++.++   ..+||+.++++++. .+.+|.++|+.+.+.            ..+    ....
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv---~~sPDGk~v~V~~~-~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGC---NMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCE---EECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             EeCcccCCceeEEEEecCCCceEE---EEcCCCCEEEEeCC-CCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            77766  434 4555444444443   56788888888876 689999999996631            111    5678


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEEEcCC----------CceeEeeccCCcceeEE---EEEeecCCCcccEEEEEeCC--
Q 019672          179 AIVLSSNGMYIATASEQGTIIRVFLVSE----------ATKSYSFRRGTYPSTIF---SLSFGQSMQFQDILVATSSS--  243 (337)
Q Consensus       179 ~~~~s~dg~~lat~s~dg~~i~vwd~~~----------~~~~~~~~~~~~~~~i~---~l~fs~dg~~~~~las~s~d--  243 (337)
                      .++|+|||...++.-.|++ |-+||+.+          .+.+.++..+..+....   .+.++|||+   +|.++..-  
T Consensus       335 h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk---~l~~~Nk~sk  410 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND---WLVCLSKFSK  410 (595)
T ss_dssp             EEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS---EEEEEESCCT
T ss_pred             eEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC---EEEEcCCCCc
Confidence            9999999943344445666 57899987          45666665443222221   235689999   88777432  


Q ss_pred             CcE-----------EEEecCCCc
Q 019672          244 GSL-----------HVFSPGFAI  255 (337)
Q Consensus       244 g~v-----------~iw~l~~~~  255 (337)
                      ..+           .++|+..++
T Consensus       411 dr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          411 DRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TSSCCCCSSCCEEEEEEECSSSS
T ss_pred             cccccCCCCCCCcceEEEcCCCc
Confidence            233           889986543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.45  E-value=0.00014  Score=64.05  Aligned_cols=226  Identities=14%  Similarity=0.109  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEE-EEEe--------------------eCCEEEEEEccCCCEEEEEeCC
Q 019672           10 VFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLC-YERA--------------------VGAFSIVEMLYSSSLLAIVGAG   67 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~~~~~~g   67 (337)
                      -.+++|+++|+++.++..+ ++..|+..+++.. +...                    ......+.+......+.++.. 
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~-   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC-   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-
Confidence            3467889999866666654 5788888766543 2210                    012223333332334444333 


Q ss_pred             CCCCCCCceEEEEECCCCCEEEEEE--cC----CceeEEEEcC-Ce-EEEEE-C------------------CeEEEEEC
Q 019672           68 EQPSLSPRRLCLFNTTTGTALRELN--FL----TSILAVRLNK-KR-LVIVL-R------------------EKTYIYDA  120 (337)
Q Consensus        68 ~~~~~~d~~v~iwd~~~~~~~~~~~--~~----~~v~~i~~~~-~~-~~v~~-d------------------~~i~i~d~  120 (337)
                            .+.|..+|..+++. ..+.  ..    ....++.+++ ++ ++++. .                  +.|..||.
T Consensus       100 ------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A          100 ------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             ------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             ------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence                  34588888775532 2221  11    2357788887 54 55543 1                  46888887


Q ss_pred             CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc-----cc--cCceEEEEeCCCCCEEEEEe
Q 019672          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----HC--EAPLAAIVLSSNGMYIATAS  193 (337)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~-----~~--~~~i~~~~~s~dg~~lat~s  193 (337)
                      .+++..........+.   .++.++++..|.++.. ..+.|.+||+.....     ..  .+ ...++++++|++.++..
T Consensus       173 ~~~~~~~~~~~~~~p~---gia~~~dg~~lyv~d~-~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          173 STKETTLLLKELHVPG---GAEVSADSSFVLVAEF-LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TTTEEEEEEEEESCCC---EEEECTTSSEEEEEEG-GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEeccCCccCc---ceEECCCCCEEEEEeC-CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            7665432221111222   3455666665554432 368899999874321     11  13 67899999999777654


Q ss_pred             C----------CCcEEEEEEcCCCceeEeeccCCc--ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          194 E----------QGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       194 ~----------dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .          .+. |..+|. +|+.+..+.....  ...+.++++ .+++   ++++....+.|.+++++..
T Consensus       248 ~~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~---L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          248 EELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGL---LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTE---EEEECSSCSEEEEEEC---
T ss_pred             CcccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCE---EEEeecCCCceEEEecccc
Confidence            4          344 457776 4777666643211  123566666 4676   6666667788999998643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.44  E-value=4.4e-05  Score=73.33  Aligned_cols=187  Identities=8%  Similarity=0.038  Sum_probs=109.0

Q ss_pred             CEEEEEcC--CceEEEeC-CCCcEEEEEeeCCE-------------EEEEEccCCCE---EEEEeCCCCCCCCCceEEEE
Q 019672           20 SGFALSTK--DGFKIFDS-STGRLCYERAVGAF-------------SIVEMLYSSSL---LAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus        20 ~~la~g~~--~g~~vw~~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~---~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+.+++.  +.+.-+|. .+|+++...+....             .-+.+.+....   .++++.      .|+.|..+
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t------~dg~l~Al  136 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ------LDGNVAAL  136 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC------TTSEEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc------CCCEEEEE
Confidence            34555554  44788999 89998877643210             00111101222   133443      48899999


Q ss_pred             ECCCCCEEEEEEcCC-----ceeE-EEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCce----------
Q 019672           81 NTTTGTALRELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKG----------  137 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-----~v~~-i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~----------  137 (337)
                      |.++|+.+-+.....     .+.+ -.+..+.+++..       ++.|+.+|..+++++..+........          
T Consensus       137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~  216 (599)
T 1w6s_A          137 NAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (599)
T ss_dssp             ETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             ECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence            999999987765432     2211 122345555544       57999999999998877754322100          


Q ss_pred             -------------------------E-EEEeeCCCccEEEEcCCCC--------------ccEEEEEEccCCccccc---
Q 019672          138 -------------------------L-CAFSPSLNACFLAVPASTT--------------KGSVLVYNVMELHSHCE---  174 (337)
Q Consensus       138 -------------------------~-~~~~~~~~~~~la~~~~~~--------------dg~v~i~d~~~~~~~~~---  174 (337)
                                               + ...+.+++..++..+....              .+.|..+|..+++..-.   
T Consensus       217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence                                     0 0112233333444443211              24788899988876421   


Q ss_pred             ------------CceEEEEeC-CCC---CEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          175 ------------APLAAIVLS-SNG---MYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       175 ------------~~i~~~~~s-~dg---~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                                  .++. +... .+|   +.++.++.+|. +.++|.++|+.+....
T Consensus       297 ~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          297 TPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANK  350 (599)
T ss_dssp             STTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEE
T ss_pred             CCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeeccc
Confidence                        1122 2222 578   56778889997 5899999999987664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.42  E-value=7.9e-06  Score=72.97  Aligned_cols=155  Identities=10%  Similarity=0.090  Sum_probs=93.6

Q ss_pred             CceeEEEEcCCe-EEEEE-------CCeEEEEECCCCeeeeeecCCCC----CceEEEEeeCCC-ccEEEEcCC-CCccE
Q 019672           95 TSILAVRLNKKR-LVIVL-------REKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSLN-ACFLAVPAS-TTKGS  160 (337)
Q Consensus        95 ~~v~~i~~~~~~-~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~la~~~~-~~dg~  160 (337)
                      ..+.++.++++. ++++.       +.+|.+||+.+++.+..+..+..    ......+..+++ +..+++..+ ..++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            367899998755 55554       26899999999987776653211    111233344443 333333220 02678


Q ss_pred             EEEEEccCCccccc----------------------------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcC-
Q 019672          161 VLVYNVMELHSHCE----------------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVS-  205 (337)
Q Consensus       161 v~i~d~~~~~~~~~----------------------------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~-  205 (337)
                      |.+||+.+++....                                  ..++.++|+|||+.|..+..++..+..++.. 
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred             EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence            99999875532110                                  1258899999999999988887633333321 


Q ss_pred             --CCc-----eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          206 --EAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       206 --~~~-----~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                        .+.     ....+....+......++++++|.   ++++...++.|.+||.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          227 LSNLQLTDAELGSKIERYSEKPICDGISIDKDHN---IYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             HTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC---EEEEEGGGTEEEEEETT
T ss_pred             hcCCCCChhhhhcceEecccCCCCceEEECCCCC---EEEEccCCCeEEEEECC
Confidence              111     000000000011245689999999   89999999999999973

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.00087  Score=58.49  Aligned_cols=221  Identities=10%  Similarity=0.061  Sum_probs=121.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-ceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCC-ceEEEEECCCC
Q 019672            8 YPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP-RRLCLFNTTTG   85 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~-g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d-~~v~iwd~~~~   85 (337)
                      .....++|+++|+++++...+ .+..||.++..............+.+..+.+++ ++..+     .+ ..|..+|..++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~-vad~~-----~~~~~v~~~d~~~g  105 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLV-ATGWN-----ADSIPVVSLVKSDG  105 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEE-EEEEC-----TTSCEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEE-EEecc-----CCcceEEEEcCCCC
Confidence            456788999999977766444 468888775432221112223344555555543 33321     12 25777788888


Q ss_pred             CEEEEEEcCC--ceeEEEEcCC-eEEEEE--CCeEEEEECCCCee-eeee-------cCCCCCceEEEEeeCCCccEEEE
Q 019672           86 TALRELNFLT--SILAVRLNKK-RLVIVL--REKTYIYDANTLAI-LDTI-------DTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        86 ~~~~~~~~~~--~v~~i~~~~~-~~~v~~--d~~i~i~d~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +.........  ....+...++ .++++.  .+.|+++|...++. +...       ...........+++  ++..|.+
T Consensus       106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~lyv  183 (306)
T 2p4o_A          106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYV  183 (306)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEE
T ss_pred             eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEEE
Confidence            7544333322  2233433333 344444  57899999865421 1100       00111112233444  4444444


Q ss_pred             cCCCCccEEEEEEccC-Ccccc-----c-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee--EeeccCCcceeEE
Q 019672          153 PASTTKGSVLVYNVME-LHSHC-----E-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS--YSFRRGTYPSTIF  223 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~-~~~~~-----~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~  223 (337)
                      +.. ..+.|..||+.. +....     . .....++++++|++.++....+. |.++|.. |+..  ..+..+  -....
T Consensus       184 ~d~-~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~~-G~~~~~~~~~~~--~~~p~  258 (306)
T 2p4o_A          184 SNT-EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS-VVRIAPD-RSTTIIAQAEQG--VIGST  258 (306)
T ss_dssp             EET-TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC-EEEECTT-CCEEEEECGGGT--CTTEE
T ss_pred             EeC-CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCe-EEEECCC-CCEEEEeecccc--cCCce
Confidence            443 478999999874 32111     1 34567899999988777666666 5789875 6552  223221  13478


Q ss_pred             EEEee---cCCCcccEEEEEeCCC
Q 019672          224 SLSFG---QSMQFQDILVATSSSG  244 (337)
Q Consensus       224 ~l~fs---~dg~~~~~las~s~dg  244 (337)
                      +++|.   ||++   .|..++..+
T Consensus       259 ~~a~~g~~~d~~---~LyVt~~~~  279 (306)
T 2p4o_A          259 AVAFGQTEGDCT---AIYVVTNGG  279 (306)
T ss_dssp             EEEECCSTTTTT---EEEEEECTT
T ss_pred             EEEEecccCCCC---EEEEECCCC
Confidence            99999   8877   666665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.38  E-value=0.00012  Score=70.16  Aligned_cols=189  Identities=14%  Similarity=0.051  Sum_probs=106.1

Q ss_pred             CCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEE--E-------EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           18 DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFS--I-------VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        18 dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      ++..++++..+++.-+|..+|+++.........  .       .......+.+.+ +.      .|+.|..+|.++|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~-~t------~dg~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFF-GT------LDASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEE-EE------TTTEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEE-Ee------CCCEEEEEECCCCCEE
Confidence            444444444366888899999998776432100  0       000112333333 33      3789999999999998


Q ss_pred             EEEEcCC-----cee-EEEEcCC------eEEEEE-------CCeEEEEECCCCeeeeeecCCCCCc-------------
Q 019672           89 RELNFLT-----SIL-AVRLNKK------RLVIVL-------REKTYIYDANTLAILDTIDTVPNLK-------------  136 (337)
Q Consensus        89 ~~~~~~~-----~v~-~i~~~~~------~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~-------------  136 (337)
                      -+.....     .+. .-.+..+      .+++..       ++.|+.+|..+++.+..........             
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            7765432     111 1111223      444433       5789999999998877654321000             


Q ss_pred             -----------------------e--E-EEEeeCCCccEEEEcCC------------C----------CccEEEEEEccC
Q 019672          137 -----------------------G--L-CAFSPSLNACFLAVPAS------------T----------TKGSVLVYNVME  168 (337)
Q Consensus       137 -----------------------~--~-~~~~~~~~~~~la~~~~------------~----------~dg~v~i~d~~~  168 (337)
                                             +  . ...+.+++..++.++..            .          ..+.|..+|..+
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                   0  0 01122233334333221            0          116788999988


Q ss_pred             Cccccc---------------CceEEEEeC-CCCC---EEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          169 LHSHCE---------------APLAAIVLS-SNGM---YIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       169 ~~~~~~---------------~~i~~~~~s-~dg~---~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      ++..-.               .++. +... .+|+   .++.++.+|. ++++|.++|+.+..+..
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence            876421               1221 2222 5774   7888999997 58999999999876643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.25  E-value=0.0016  Score=64.67  Aligned_cols=226  Identities=12%  Similarity=0.121  Sum_probs=137.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe----------eCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA----------VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      ...|.++...++|.+.+....+|+..|+..+++...-..          ...+..+....+.+.+.+.+       .++-
T Consensus       356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-------~~~G  428 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-------HAGG  428 (795)
T ss_dssp             CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-------TTTE
T ss_pred             CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-------CcCc
Confidence            456999999999986554444589999988776533211          12233333223333243333       2467


Q ss_pred             EEEEECCCCCEEEEEEc------CCceeEEEEcC-CeEEEEECCeEEEEECCCCeeeeeecC----CCCCceEEEEeeCC
Q 019672           77 LCLFNTTTGTALRELNF------LTSILAVRLNK-KRLVIVLREKTYIYDANTLAILDTIDT----VPNLKGLCAFSPSL  145 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~------~~~v~~i~~~~-~~~~v~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~  145 (337)
                      |..+|.++++.. .+..      ...|.++..++ +.+.+++.+.+.+||..+++.......    ......+.++..++
T Consensus       429 l~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          429 LSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             EEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             eeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence            999999887643 3322      23688888765 457777777899999887654322111    11123466777777


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCcc----------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec-
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHS----------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR-  214 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~----------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~-  214 (337)
                      ++.+.+...    +-+..||..+.+.          .....|.++..+++|++.++. ..|  +..||..+++. ..+. 
T Consensus       508 ~g~lWigt~----~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G--l~~~d~~~~~~-~~~~~  579 (795)
T 4a2l_A          508 HKRLWIGGE----EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG--FYCFNEKDKQI-KRYNT  579 (795)
T ss_dssp             TCCEEEEES----SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC--EEEEETTTTEE-EEECG
T ss_pred             CCCEEEEeC----CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC--ceeECCCCCcE-EEeCC
Confidence            776555332    3377788765432          122579999999999866544 346  46899877653 2332 


Q ss_pred             -cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          215 -RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       215 -~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                       .+.....|.++...++|.   +.+++ .. -|..|+.++
T Consensus       580 ~~gl~~~~i~~i~~d~~g~---lWi~t-~~-Gl~~~~~~~  614 (795)
T 4a2l_A          580 TNGLPNNVVYGILEDSFGR---LWLST-NR-GISCFNPET  614 (795)
T ss_dssp             GGTCSCSCEEEEEECTTSC---EEEEE-TT-EEEEEETTT
T ss_pred             CCCCchhheEEEEECCCCC---EEEEc-CC-ceEEEcCCC
Confidence             222233589999999998   55444 44 466777654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.24  E-value=0.001  Score=66.18  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      |.++...++|.+.+....+|+..|+..+++...... .....+..+..+.+..+.++.      .++-|.+||..+++..
T Consensus       175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt------~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVAT------EGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEE------BSSCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEE------CCCCeEEEeCCCCeEE
Confidence            888888888876654434689999987765432211 111112233333322233332      1346899998876533


Q ss_pred             EEEEc---------CCceeEEEEcC-CeEEEEECCeEEEEECCCCeeeeeecCC-----CCCceEEEEeeCCCccEEEEc
Q 019672           89 RELNF---------LTSILAVRLNK-KRLVIVLREKTYIYDANTLAILDTIDTV-----PNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        89 ~~~~~---------~~~v~~i~~~~-~~~~v~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~~  153 (337)
                       .+..         ...|.++..++ ..+.+++++-+.+||..+.+........     -....+.++..++++.+-+..
T Consensus       249 -~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt  327 (795)
T 4a2l_A          249 -NYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT  327 (795)
T ss_dssp             -EECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE
T ss_pred             -EeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE
Confidence             3322         23588888864 4577777668999998776543222111     112346777777777655433


Q ss_pred             CCCCccEEEEEEccCCccc-----------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC------
Q 019672          154 ASTTKGSVLVYNVMELHSH-----------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG------  216 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~-----------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~------  216 (337)
                      .   ++-|..|+..+....           ....|.++..+++|++-+ |+.++. +..||..+++... +...      
T Consensus       328 ~---~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~G-l~~~~~~~~~~~~-~~~~~~~~~~  401 (795)
T 4a2l_A          328 Y---FGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGG-LNLYNPITQRFTS-YTLQEDESAR  401 (795)
T ss_dssp             S---SSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSC-EEEECTTTCCEEE-ECCC------
T ss_pred             C---CCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCC-eEEEcCCCCcEEE-EecCCCCccc
Confidence            2   355888886543211           125699999999998555 666644 4689988765432 2211      


Q ss_pred             -CcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          217 -TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       217 -~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                       .....|.++...++|.   .|..|+.++-|.+||.+++
T Consensus       402 ~l~~~~v~~i~~d~~g~---~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          402 GIGSNNIKAVYVDEKKS---LVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             CCSCSCEEEEEEETTTT---EEEEEETTTEEEEEETTTC
T ss_pred             CCCCccEEEEEEcCCCC---EEEEEeCcCceeEEeCCCC
Confidence             1124599999988886   6888888777999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.0035  Score=62.18  Aligned_cols=231  Identities=12%  Similarity=0.087  Sum_probs=137.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE-e-----e---CCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-A-----V---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~-~-----~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      +...|+++...++|.+.+....+|+..|+..+.....-. .     .   ..-.+.++..+.+..+.++.      .++-
T Consensus       311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt------~~~G  384 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT------DGGG  384 (781)
T ss_dssp             SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE------BSSC
T ss_pred             CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe------CCCc
Confidence            346799999999998655444788999988765433211 0     0   11123344444433233333      2456


Q ss_pred             EEEEECCCCCEEEEE---E-cCCceeEEEEc-CCeEEEEE-CCeEEEEECCCCeeeeeecC-CCCCceEEEEeeCCCccE
Q 019672           77 LCLFNTTTGTALREL---N-FLTSILAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        77 v~iwd~~~~~~~~~~---~-~~~~v~~i~~~-~~~~~v~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  149 (337)
                      |..||..+++...-.   . ....|.++..+ .+.+.+++ ++-+..+|..+++.. .+.. ......+.++..++++.+
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l  463 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI  463 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE
Confidence            888888754322110   1 12468888876 45677777 478999998776543 2221 112235677777777665


Q ss_pred             EEEcCCCCccEEEEEEccCCcccc----------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--CC
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHC----------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--GT  217 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~----------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~--~~  217 (337)
                      .+...    +-|..||..+.+..+          ...|.++..+++|++.+.....| + ..+|..+++. ..+..  +.
T Consensus       464 wigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l-~~~~~~~~~~-~~~~~~~~l  536 (781)
T 3v9f_A          464 WIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V-GIYTPDMQLV-RKFNQYEGF  536 (781)
T ss_dssp             EEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E-EEECTTCCEE-EEECTTTTC
T ss_pred             EEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E-EEEeCCCCeE-EEccCCCCC
Confidence            54332    348889887654321          25699999999998666544456 4 5788876643 33321  12


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ....|.++...++|.   +.+ |+.+|.|..||.++.
T Consensus       537 ~~~~i~~i~~d~~g~---lWi-~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          537 CSNTINQIYRSSKGQ---MWL-ATGEGLVCFPSARNF  569 (781)
T ss_dssp             SCSCEEEEEECTTSC---EEE-EETTEEEEESCTTTC
T ss_pred             CCCeeEEEEECCCCC---EEE-EECCCceEEECCCCC
Confidence            234589999999998   444 444776588876543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.00059  Score=60.45  Aligned_cols=172  Identities=14%  Similarity=0.170  Sum_probs=107.3

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--------EEEEE--C---CeEEEEECC-CCeeeeeec-------CC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--------LVIVL--R---EKTYIYDAN-TLAILDTID-------TV  132 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--------~~v~~--d---~~i~i~d~~-~~~~~~~~~-------~~  132 (337)
                      .+-|.++|+ +|+.+..+.. ..+..+.+-++.        +++++  +   ++|.+|++. ....+..+.       +.
T Consensus        49 ~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~  126 (355)
T 3amr_A           49 KSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA  126 (355)
T ss_dssp             TTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred             CCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence            578999999 8888888764 456665554432        44444  4   589999773 222344442       11


Q ss_pred             -CCCceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccC---C----ccccc----CceEEEEeCCCCCEEEEEeCCCcEE
Q 019672          133 -PNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVME---L----HSHCE----APLAAIVLSSNGMYIATASEQGTII  199 (337)
Q Consensus       133 -~~~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~---~----~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i  199 (337)
                       ..+.++|.+.....+. ++++.+  .+|.+..|++..   +    +.+.+    +.+..|++++...+|..+-++-. |
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~G-I  203 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEA-I  203 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-E
T ss_pred             CCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccce-E
Confidence             3445555544322343 455555  479999999843   2    22222    77889999998889999998854 4


Q ss_pred             EEEEcC-----CCceeEeeccCCcceeEEEEEe--ecCCCcccEEEEEe-CCCcEEEEecC
Q 019672          200 RVFLVS-----EATKSYSFRRGTYPSTIFSLSF--GQSMQFQDILVATS-SSGSLHVFSPG  252 (337)
Q Consensus       200 ~vwd~~-----~~~~~~~~~~~~~~~~i~~l~f--s~dg~~~~~las~s-~dg~v~iw~l~  252 (337)
                      ..++.+     +++.+..+..+.-.+.+..|++  .++++  .+|++++ .+++..|||.+
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~--gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK--GYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC--EEEEEEEGGGTEEEEEESS
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC--EEEEEEcCCCCEEEEEECC
Confidence            556654     3455655533333345777777  45554  2566655 56799999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.22  E-value=0.0018  Score=55.02  Aligned_cols=211  Identities=7%  Similarity=-0.067  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCEEEEEc-C-CceEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALST-K-DGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~-~-~g~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      ...++|++++..|..+. . +.+.+++.++........  ......+.+.+....+.++..      ..++|.++++...
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~g~  111 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTEEEEEETTSC
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC------CCCEEEEEEcCCC
Confidence            46889999776665543 3 347888987664322221  123344555555555555544      3678999998754


Q ss_pred             CEEEEEEcC-CceeEEEEcC--CeEEEEE----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           86 TALRELNFL-TSILAVRLNK--KRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        86 ~~~~~~~~~-~~v~~i~~~~--~~~~v~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      ......... .....+++++  ..++++.    .+.|..+++... ....+... .......++.++++..|..+.. ..
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~-~~  188 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQD-NLGLPNGLTFDAFSSQLCWVDA-GT  188 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECT-TCSCEEEEEEETTTTEEEEEET-TT
T ss_pred             CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEEC-CCCCCcEEEEcCCCCEEEEEEC-CC
Confidence            332222222 3567888886  4566665    247888887533 22222111 1112344555565545544443 46


Q ss_pred             cEEEEEEccCCcccc---c-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          159 GSVLVYNVMELHSHC---E-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       159 g~v~i~d~~~~~~~~---~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +.|.++|+.......   . .....+++.  +..|..+...+..|.++|..+++.+.++..+.. ...+.+++.|++.
T Consensus       189 ~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~  263 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC  263 (267)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred             CEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence            899999987543211   1 334566664  445555554433468999999998888754421 1246678888864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.21  E-value=0.00018  Score=69.16  Aligned_cols=224  Identities=10%  Similarity=0.075  Sum_probs=131.5

Q ss_pred             EEEEcCCc-eEEEeCCCCcEEEEEeeCCE----EEE-E-EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC
Q 019672           22 FALSTKDG-FKIFDSSTGRLCYERAVGAF----SIV-E-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        22 la~g~~~g-~~vw~~~~~~~~~~~~~~~~----~~~-~-~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      +.+++.++ +..+|..+|+++........    .+. . ... .+.+ +++.+......++.|+.+|.++|+.+-++...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V-~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKV-IIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEE-EECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEE-EEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            66676655 68899999999877543220    000 0 011 2333 33321000002789999999999998877654


Q ss_pred             Ccee---------------------------------------EEEE--cCCeEEEEE-C----------------CeEE
Q 019672           95 TSIL---------------------------------------AVRL--NKKRLVIVL-R----------------EKTY  116 (337)
Q Consensus        95 ~~v~---------------------------------------~i~~--~~~~~~v~~-d----------------~~i~  116 (337)
                      .+..                                       ...+  ..+.+++.. +                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            3220                                       1223  234455544 2                3799


Q ss_pred             EEECCCCeeeeeecCCCCCc-------eEEEEee-CCCc---cEEEEcCCCCccEEEEEEccCCccccc---C-------
Q 019672          117 IYDANTLAILDTIDTVPNLK-------GLCAFSP-SLNA---CFLAVPASTTKGSVLVYNVMELHSHCE---A-------  175 (337)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~---~~la~~~~~~dg~v~i~d~~~~~~~~~---~-------  175 (337)
                      .+|..+++.+..++...+..       ....+.. ..++   ..++.++  .+|.+.++|..+++.+..   .       
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCccccc
Confidence            99999999988776543211       1111121 1234   3555555  489999999988875421   1       


Q ss_pred             --------ce--------------------------EEEEeCCCCCEEEEEe----------------------------
Q 019672          176 --------PL--------------------------AAIVLSSNGMYIATAS----------------------------  193 (337)
Q Consensus       176 --------~i--------------------------~~~~~s~dg~~lat~s----------------------------  193 (337)
                              ++                          ..++++|+..++....                            
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence                    11                          2456777766655432                            


Q ss_pred             -----------CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          194 -----------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       194 -----------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                 .+|. +.-||+.+|+.+.+...+.   +..+-.....+.   .+..++.||.++.||.++++.
T Consensus       440 ~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMERF---AVWGGTMATAGD---LVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             ECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             cCCcCCcccCCCcCe-EEEEECCCCCEEeEecCCC---CccCcceEecCC---EEEEECCCCeEEEEECCCCCE
Confidence                       2355 5789999999887764331   111111223455   788899999999999988765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.0047  Score=61.24  Aligned_cols=229  Identities=8%  Similarity=-0.028  Sum_probs=134.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE-e------eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-A------VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ...|.++...++|.+.+. +.+|+.+||..+++...-. .      .....+.++..+.+..+.++.      ..+-|.+
T Consensus       210 ~~~i~~i~~d~~g~lwig-t~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt------~~~Gl~~  282 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWIG-TSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIAT------ELNGIMI  282 (781)
T ss_dssp             CSSEEEEEECTTCCEEEE-ETTEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEE------SSSCEEE
T ss_pred             CCceeEEEEcCCCCEEEE-eCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEe------CCCCeEE
Confidence            356999999999886554 4559999998776543211 1      111223344444444444443      2357889


Q ss_pred             EECCCCCEEEEEE---------------cCCceeEEEEcCC-eEEEEE-CCeEEEEECCCCeeeeeecC--------CCC
Q 019672           80 FNTTTGTALRELN---------------FLTSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDT--------VPN  134 (337)
Q Consensus        80 wd~~~~~~~~~~~---------------~~~~v~~i~~~~~-~~~v~~-d~~i~i~d~~~~~~~~~~~~--------~~~  134 (337)
                      +|..+++......               ....|.++..+++ .+.+++ ++-|..|+....... .+..        ...
T Consensus       283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~  361 (781)
T 3v9f_A          283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLS  361 (781)
T ss_dssp             EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCS
T ss_pred             ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCC
Confidence            9987765332111               1236888888664 466777 778999988654322 2211        011


Q ss_pred             CceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc--------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       135 ~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~--------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      ...+.++..++++.+.+...   ++-|..||..+....+        ...|.++..+++|++.+ |+.++. +..+|..+
T Consensus       362 ~~~v~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~G-l~~~~~~~  436 (781)
T 3v9f_A          362 NKVVSSVCDDGQGKLWIGTD---GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGN-ISYYNTRL  436 (781)
T ss_dssp             SSCEEEEEECTTSCEEEEEB---SSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEE-EEEECSSS
T ss_pred             CcceEEEEEcCCCCEEEEeC---CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCC-EEEEcCCC
Confidence            23467777777665544321   3448888876543221        26799999999988665 555444 46888877


Q ss_pred             CceeEeecc-CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          207 ATKSYSFRR-GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       207 ~~~~~~~~~-~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ++. ..+.. ......|.++...++|.    |-.|+. +-|..|+.++.
T Consensus       437 ~~~-~~~~~~~~~~~~v~~i~~d~~g~----lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          437 KKF-QIIELEKNELLDVRVFYEDKNKK----IWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             CEE-EECCSTTTCCCCEEEEEECTTSE----EEEEET-TEEEEEESSSS
T ss_pred             CcE-EEeccCCCCCCeEEEEEECCCCC----EEEEEC-CceEEEeCCCC
Confidence            654 23322 12234699999988886    444455 45888887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.04  E-value=0.0016  Score=62.33  Aligned_cols=229  Identities=11%  Similarity=0.128  Sum_probs=130.7

Q ss_pred             CCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC------E---EEEE-EccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGA------F---SIVE-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus        19 g~~la~g~~~g-~~vw~~~~~~~~~~~~~~~------~---~~~~-~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      +..+.+++.++ +.-+|..+|+++...+...      +   ..+. -.......++++........++.|..+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            34566666554 6889999999887654321      0   1111 0001111344432100000268999999999998


Q ss_pred             EEEEEcCCce------------------------------------------eEEEEc--CCeEEEEE------------
Q 019672           88 LRELNFLTSI------------------------------------------LAVRLN--KKRLVIVL------------  111 (337)
Q Consensus        88 ~~~~~~~~~v------------------------------------------~~i~~~--~~~~~v~~------------  111 (337)
                      +-+.......                                          ...+++  .+.+++..            
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            8766442100                                          012232  24455554            


Q ss_pred             ---------C----CeEEEEECCCCeeeeeecCCCCC-------ceEEEEeeC-CCc---cEEEEcCCCCccEEEEEEcc
Q 019672          112 ---------R----EKTYIYDANTLAILDTIDTVPNL-------KGLCAFSPS-LNA---CFLAVPASTTKGSVLVYNVM  167 (337)
Q Consensus       112 ---------d----~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~---~~la~~~~~~dg~v~i~d~~  167 (337)
                               |    +.|..+|..+++.+..++...+.       .....+... .++   ..++.++  .+|.+.++|..
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~  354 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRS  354 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECC
Confidence                     1    47999999999998887553221       111112211 233   3555555  48999999998


Q ss_pred             CCccccc---Cc-----------------------------------------------eEEEEeCCCCCEEEEEe----
Q 019672          168 ELHSHCE---AP-----------------------------------------------LAAIVLSSNGMYIATAS----  193 (337)
Q Consensus       168 ~~~~~~~---~~-----------------------------------------------i~~~~~s~dg~~lat~s----  193 (337)
                      +++.+..   .+                                               -..++++|+..++....    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            8765421   10                                               01356777655554433    


Q ss_pred             -----------------------------CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          194 -----------------------------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       194 -----------------------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                                                   .+|. |.-||+.+|+.+.+...+.   ++..-.....+.   +++.++.||
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---lvf~g~~dg  507 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN---LVFTGTGDG  507 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEESS---CCCSCCEEETTT---EEEEECTTS
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcce-EEEEECCCCCEEEEecCCC---CCcccceEeCCC---EEEEECCCC
Confidence                                         2465 5789999999887765432   111111222355   788899999


Q ss_pred             cEEEEecCCCcc
Q 019672          245 SLHVFSPGFAIN  256 (337)
Q Consensus       245 ~v~iw~l~~~~~  256 (337)
                      .++.||.++++.
T Consensus       508 ~l~A~D~~tG~~  519 (582)
T 1flg_A          508 YFKAFDAKSGKE  519 (582)
T ss_dssp             EEEEEETTTCCE
T ss_pred             cEEEEECCCCCE
Confidence            999999988765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.01  E-value=0.0081  Score=54.52  Aligned_cols=255  Identities=12%  Similarity=0.149  Sum_probs=153.0

Q ss_pred             ceEEEeCCCCcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCe
Q 019672           29 GFKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKR  106 (337)
Q Consensus        29 g~~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~  106 (337)
                      .+.|-|+.+...... ....+..  -|.+..+.+++-++        +++.|+|+++.+.++...++++|.--+| +++.
T Consensus        49 ~vvIiDl~~~~~~~rrpi~AdsA--IMnP~~~iiALrag--------~~lQiFnle~K~klks~~~~e~VvfWkWis~~~  118 (494)
T 1bpo_A           49 QVVIIDMNDPSNPIRRPISADSA--IMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT  118 (494)
T ss_dssp             EEEEEETTSTTSCEEEECCCSEE--EECSSSSCEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEEEETTE
T ss_pred             eEEEEECCCCCcceeccccccee--eeCCCCcEEEEecC--------CeEEEEchHHhhhhcceecCCCceEEEecCCCe
Confidence            367778776644322 2222222  35566778887764        6999999999999999999999887776 7889


Q ss_pred             EEEEECCeEEEEECCCC-eeeeeecCCC--CCceEEEEeeCCCccEEEEcCC-----CCccEEEEEEccCCccc-ccCce
Q 019672          107 LVIVLREKTYIYDANTL-AILDTIDTVP--NLKGLCAFSPSLNACFLAVPAS-----TTKGSVLVYNVMELHSH-CEAPL  177 (337)
Q Consensus       107 ~~v~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~-----~~dg~v~i~d~~~~~~~-~~~~i  177 (337)
                      +.++++..|+-|++... .+.+.++.+.  +...+..+..+++..+++..|-     .-.|.+++|........ .++..
T Consensus       119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha  198 (494)
T 1bpo_A          119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA  198 (494)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE
T ss_pred             EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee
Confidence            99999999999999642 4444444332  2456788888999998886651     13588899988765422 11111


Q ss_pred             EE-EEeCCCC-----CEEEEEeCC--CcEEEEEEcCCC---c-----eeEeeccCC--cceeEEEEEeecCCCcccEEEE
Q 019672          178 AA-IVLSSNG-----MYIATASEQ--GTIIRVFLVSEA---T-----KSYSFRRGT--YPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       178 ~~-~~~s~dg-----~~lat~s~d--g~~i~vwd~~~~---~-----~~~~~~~~~--~~~~i~~l~fs~dg~~~~~las  239 (337)
                      -+ ..+-.+|     +.++-+...  |.-++|-++...   .     +...+....  ...--.++..|+.-.   .+..
T Consensus       199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg---viyv  275 (494)
T 1bpo_A          199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFL  275 (494)
T ss_dssp             EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT---EEEE
T ss_pred             eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC---EEEE
Confidence            11 1111121     133333322  223678887432   1     111111111  011134678887776   8888


Q ss_pred             EeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          240 TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                      -..-|.||+||++++..        -|+..+.++.+   +..+         + .....-+++....|.|.--.++.+
T Consensus       276 iTK~G~i~lyDleTgt~--------i~~nrIs~~~i---F~t~---------~-~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          276 ITKYGYIHLYDLETGTC--------IYMNRISGETI---FVTA---------P-HEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EETTSEEEEEETTTCCE--------EEEEECCSSCE---EEEE---------E-ETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EecCceEEEEeccccee--------eeeecccCCce---EEec---------c-cCCCCcEEEEccCceEEEEEEccc
Confidence            89999999999998764        22222222211   0000         0 111245888888888777766544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.99  E-value=0.00029  Score=68.71  Aligned_cols=181  Identities=11%  Similarity=0.081  Sum_probs=115.9

Q ss_pred             CceEEEEECCCCCEEEEEEcCCce------------eEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSI------------LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v------------~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      ++.|..+|.++|+.+-++....+.            ..+.+..+.+++.. ++.+..+|..+++.+..+........ ..
T Consensus        75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~-~~  153 (668)
T 1kv9_A           75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP-YS  153 (668)
T ss_dssp             GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS-CB
T ss_pred             CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCc-ce
Confidence            789999999999999887653321            22445567777776 88999999999999887755321100 00


Q ss_pred             EeeCC---CccEEEEcCCC----CccEEEEEEccCCccccc------Cc------------------------------e
Q 019672          141 FSPSL---NACFLAVPAST----TKGSVLVYNVMELHSHCE------AP------------------------------L  177 (337)
Q Consensus       141 ~~~~~---~~~~la~~~~~----~dg~v~i~d~~~~~~~~~------~~------------------------------i  177 (337)
                      +...|   ++ .++++...    .+|.|..+|..+++.+-+      .+                              .
T Consensus       154 ~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w  232 (668)
T 1kv9_A          154 ITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW  232 (668)
T ss_dssp             CCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCC
T ss_pred             ecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccc
Confidence            00011   22 33333210    158899999988876422      00                              1


Q ss_pred             EEEEeCCCCCEEEEEeCCCc------------------EEEEEEcCCCceeEeeccCCcc-------eeEEEEEeecCCC
Q 019672          178 AAIVLSSNGMYIATASEQGT------------------IIRVFLVSEATKSYSFRRGTYP-------STIFSLSFGQSMQ  232 (337)
Q Consensus       178 ~~~~~s~dg~~lat~s~dg~------------------~i~vwd~~~~~~~~~~~~~~~~-------~~i~~l~fs~dg~  232 (337)
                      ..++++|++.++..++.++.                  .|.-+|..+|+.+..+...++.       .+.....+..+|+
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            24688888888888887663                  2578999999999887654221       2222223334663


Q ss_pred             cccEEEEEeCCCcEEEEecCCCcc
Q 019672          233 FQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      ....++.++.+|.++++|..+++.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCE
T ss_pred             EEEEEEEECCCCEEEEEECCCCCE
Confidence            112588999999999999877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.90  E-value=0.0048  Score=54.65  Aligned_cols=185  Identities=12%  Similarity=0.234  Sum_probs=107.9

Q ss_pred             CCCEEE-EEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccC----CC--EEEEEeCCCCCCCC--CceEEEEEC--CCCC
Q 019672           18 DNSGFA-LSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS----SS--LLAIVGAGEQPSLS--PRRLCLFNT--TTGT   86 (337)
Q Consensus        18 dg~~la-~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~g~~~~~~--d~~v~iwd~--~~~~   86 (337)
                      ..++++ +-...|+.|||+ .|+++.....+...-+.+.+.    ..  -+++++..     .  +++|+++++  .+++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTCC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCCc
Confidence            445533 334457999999 788777665444444444331    11  14556552     4  689999955  4544


Q ss_pred             EEEEEEc-------C-CceeEEEE--cC--Ce-EEEEE--CCeEEEEEC---C----CCeeeeeecCCCCCceEEEEeeC
Q 019672           87 ALRELNF-------L-TSILAVRL--NK--KR-LVIVL--REKTYIYDA---N----TLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        87 ~~~~~~~-------~-~~v~~i~~--~~--~~-~~v~~--d~~i~i~d~---~----~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                       +..+..       . ..+..+++  ++  .. .+++.  ++.+..|++   .    +.+.++++....++.+ |  ..+
T Consensus       113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Eg-c--vvD  188 (355)
T 3amr_A          113 -LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEG-M--AAD  188 (355)
T ss_dssp             -EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEE-E--EEE
T ss_pred             -eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcce-E--EEc
Confidence             444421       1 34556666  54  22 23334  678888888   2    3366777776654433 2  334


Q ss_pred             CCccEEEEcCCCCccEEEEEEcc-----CCcccc-------cCceEEEEe--CCCCC-EEEEEeCCCcEEEEEEcC-CCc
Q 019672          145 LNACFLAVPASTTKGSVLVYNVM-----ELHSHC-------EAPLAAIVL--SSNGM-YIATASEQGTIIRVFLVS-EAT  208 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~-----~~~~~~-------~~~i~~~~~--s~dg~-~lat~s~dg~~i~vwd~~-~~~  208 (337)
                      +....|..+-  ++.-|..+|..     +.+.+.       ...+..|++  .++|+ +|+++|+....+.|||.+ +.+
T Consensus       189 d~~g~Lyv~e--Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~  266 (355)
T 3amr_A          189 DEYGRLYIAE--EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK  266 (355)
T ss_dssp             TTTTEEEEEE--TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             CCCCeEEEec--ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence            4455666655  45557777754     222221       146888888  66777 777777433336799997 677


Q ss_pred             eeEeec
Q 019672          209 KSYSFR  214 (337)
Q Consensus       209 ~~~~~~  214 (337)
                      .+..|+
T Consensus       267 ~vg~f~  272 (355)
T 3amr_A          267 YVADFR  272 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            777774

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.78  E-value=0.022  Score=52.29  Aligned_cols=232  Identities=10%  Similarity=0.087  Sum_probs=124.1

Q ss_pred             eEEEEEcCC--CCEEEEEc-CCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCc-eEEEEECCC
Q 019672           10 VFFVSFNQD--NSGFALST-KDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPR-RLCLFNTTT   84 (337)
Q Consensus        10 v~~~~fs~d--g~~la~g~-~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~-~v~iwd~~~   84 (337)
                      -..++|+|+  +..|.++. ...++.++..+++...... ......+.+..+.+ +.++..+.   ..+. .+...+...
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~---~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQS---SDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCS---CTTSEEEEEECGGG
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCC---CcccceEEEEECCC
Confidence            458899985  34444443 3567888987776644332 23345566666666 33332210   0111 233333222


Q ss_pred             CCE-EEEEEcCCceeEEEEcC-C-eEEEEE--CCeEEEEECCCCeeeeee-cCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           85 GTA-LRELNFLTSILAVRLNK-K-RLVIVL--REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        85 ~~~-~~~~~~~~~v~~i~~~~-~-~~~v~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      +.. ...+..-.....+++++ + .++++.  .+.|+.+|..++.....+ .....+ ....++.+|++..|..+.. ..
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~-~~~~ia~dpdG~~LYvad~-~~  294 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG-SNFHIVWHPTGDWAYIIYN-GK  294 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS-SCEEEEECTTSSEEEEEET-TT
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC-CcccEEEeCCCCEEEEEeC-CC
Confidence            211 01121122345567776 4 455554  568999998766552222 211111 1224566677765544443 46


Q ss_pred             cEEEEEEccC--Cccc----------------------ccCceEEEEe---------CCCCCEEEEEeCCCcEEEEEEcC
Q 019672          159 GSVLVYNVME--LHSH----------------------CEAPLAAIVL---------SSNGMYIATASEQGTIIRVFLVS  205 (337)
Q Consensus       159 g~v~i~d~~~--~~~~----------------------~~~~i~~~~~---------s~dg~~lat~s~dg~~i~vwd~~  205 (337)
                      +.|..+|...  +...                      .-.....+++         .++|.+.++-...++ |+.++. 
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~-  372 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP-  372 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT-
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC-
Confidence            8899988642  2110                      0033567999         788876666555544 788884 


Q ss_pred             CCceeEeeccCC------cc---------eeEEEEEee-cCCCcccEEEEEeCCCcEEEEecC
Q 019672          206 EATKSYSFRRGT------YP---------STIFSLSFG-QSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       206 ~~~~~~~~~~~~------~~---------~~i~~l~fs-~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      +|........+.      ..         .....|+++ ++|.   ++++-...+.|+.++++
T Consensus       373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~---lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC---FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE---EEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE---EEEEeCCCCEEEEEecC
Confidence            564432221110      00         126789999 6776   67766777889888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.75  E-value=0.022  Score=51.39  Aligned_cols=230  Identities=5%  Similarity=-0.067  Sum_probs=129.2

Q ss_pred             EEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~   89 (337)
                      +|.+..+ ..+|+.+....++..++++.+...... .....-+++.+..+.+.++..      ..+.|..+++..+....
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCcEE
Confidence            3555455 345556666678778877654432222 233444555555566666554      46789999988765433


Q ss_pred             EEEcC-CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEE
Q 019672           90 ELNFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY  164 (337)
Q Consensus        90 ~~~~~-~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~  164 (337)
                      .+... .....++++  ...++++.  .+.|.+.++........+...  ......++.+|.+..|..+.....+.|..+
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            33221 234456665  45566665  568888887644322222211  112234455554445555443122788888


Q ss_pred             EccCCccc---cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          165 NVMELHSH---CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       165 d~~~~~~~---~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      ++......   ..  ...+.|+|+|++..|..+......|..+|+........+..+  ......|++ ..+.   ++.+
T Consensus       231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~---ly~t  304 (386)
T 3v65_B          231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS---LYWT  304 (386)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTE---EEEE
T ss_pred             eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCE---EEEe
Confidence            87643221   11  457899999877777666655445788887643322222211  123567787 3455   6777


Q ss_pred             EeCCCcEEEEecCCCc
Q 019672          240 TSSSGSLHVFSPGFAI  255 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~  255 (337)
                      -...+.|..++..++.
T Consensus       305 d~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          305 DWHTKSINSANKFTGK  320 (386)
T ss_dssp             ETTTTEEEEEETTTCC
T ss_pred             eCCCCeEEEEECCCCc
Confidence            7778889888854443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.66  E-value=0.00088  Score=66.25  Aligned_cols=114  Identities=8%  Similarity=0.077  Sum_probs=74.7

Q ss_pred             eEEEEeeC-CCccEEEEcCCC---CccEEEEEEccCC-ccccc---CceEEEEeCCCCCEEEEEeCCC----cEEEEEEc
Q 019672          137 GLCAFSPS-LNACFLAVPAST---TKGSVLVYNVMEL-HSHCE---APLAAIVLSSNGMYIATASEQG----TIIRVFLV  204 (337)
Q Consensus       137 ~~~~~~~~-~~~~~la~~~~~---~dg~v~i~d~~~~-~~~~~---~~i~~~~~s~dg~~lat~s~dg----~~i~vwd~  204 (337)
                      .+.+.+++ ||+.++|+....   ...+|+++|+.++ +.+..   .....++|+|||+.|+..+.|.    ..|.++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            45667788 899988876421   1235999999988 53221   2245689999999888887652    23577888


Q ss_pred             CCCce--eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCCC
Q 019672          205 SEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFA  254 (337)
Q Consensus       205 ~~~~~--~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~~  254 (337)
                      .+++.  ...+... ...-..++.|||||+   +|+..+.+   ..|.++|+.++
T Consensus       255 gt~~~~~~lv~~~~-~~~~~~~~~~SpDg~---~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          255 GKLQSEDVCLYEEH-NPLFSAFMYKAADTN---TLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TSCGGGCEEEEECC-CTTCEEEEEECTTSS---EEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCchhcEEEEecC-CCceEEEEEECCCCC---EEEEEecCCCCceEEEEECCCC
Confidence            77642  1222211 122356789999999   77766633   35788888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.62  E-value=0.016  Score=50.67  Aligned_cols=170  Identities=11%  Similarity=0.097  Sum_probs=98.5

Q ss_pred             CCceEEEEECCCCCEEEEEEc---------------------CCceeEEEEcC--CeEEEEE-CCeEEEEECCCCeeeee
Q 019672           73 SPRRLCLFNTTTGTALRELNF---------------------LTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDT  128 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~---------------------~~~v~~i~~~~--~~~~v~~-d~~i~i~d~~~~~~~~~  128 (337)
                      .++.|..||..+++.. .+..                     ...+.++++++  ..++++. .+.+..+|..+++. ..
T Consensus        38 ~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~  115 (322)
T 2fp8_A           38 QDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQ  115 (322)
T ss_dssp             TTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EE
T ss_pred             CCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EE
Confidence            3678888988765533 2221                     12467888875  4577775 55688888765532 22


Q ss_pred             ecCC-C--CCceEEEEeeCC-CccEEEEcCC---------------CCccEEEEEEccCCcccc----cCceEEEEeCCC
Q 019672          129 IDTV-P--NLKGLCAFSPSL-NACFLAVPAS---------------TTKGSVLVYNVMELHSHC----EAPLAAIVLSSN  185 (337)
Q Consensus       129 ~~~~-~--~~~~~~~~~~~~-~~~~la~~~~---------------~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~d  185 (337)
                      +... .  .......+..++ ++.+.++...               ..+|.|..||..+++...    ....+.++++|+
T Consensus       116 ~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d  195 (322)
T 2fp8_A          116 LATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSAD  195 (322)
T ss_dssp             EESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTT
T ss_pred             ecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCC
Confidence            2111 1  011234556667 6665554321               024778889986654321    145678999999


Q ss_pred             CCEEEEE-eCCCcEEEEEEcCCCc--eeEeeccCCcceeEEEEEeecCCCcccEEEEEeC----------CCcEEEEec
Q 019672          186 GMYIATA-SEQGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSP  251 (337)
Q Consensus       186 g~~lat~-s~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~----------dg~v~iw~l  251 (337)
                      |++|..+ +..+. |.+|++....  ....+..  ... ...+++.++|.   ++++...          .+.|..+|.
T Consensus       196 g~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~---l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          196 SSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGH---FWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             SSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSC---EEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             CCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCC---EEEEecCcccccccCCCccEEEEECC
Confidence            9866555 44455 6788887421  1111211  112 56789999998   6666544          355777764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.62  E-value=0.039  Score=50.54  Aligned_cols=234  Identities=7%  Similarity=0.009  Sum_probs=122.5

Q ss_pred             CeEEEEEcC-CCCEEEEEc-CCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            9 PVFFVSFNQ-DNSGFALST-KDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         9 ~v~~~~fs~-dg~~la~g~-~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .-..++|+| ++..|.+.. ...++++|++++++..-. .......+++..+.+.+.++..+..  .....+...+. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN--NDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC--TTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC--cccceEEEEeC-CC
Confidence            346789998 344454443 355788898876654322 2233455666666675554443100  01123333343 23


Q ss_pred             CEE--EEEEcCCceeEEEEcC-C-eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           86 TAL--RELNFLTSILAVRLNK-K-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        86 ~~~--~~~~~~~~v~~i~~~~-~-~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      ...  ..+.......++++++ + .++++.  .+.|..++...+.......... ...-..++.+|++.+|..+.. ..+
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~-~~~  292 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVV-NQH  292 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEET-TTT
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEEC-CCC
Confidence            221  2222223345677877 4 455554  6799999998765422222111 112234566677775544443 478


Q ss_pred             EEEEEEccCC--cc-----c-----------------ccCceE-EEEeC--------CCCCEEEEEeCCCcEEEEEEcCC
Q 019672          160 SVLVYNVMEL--HS-----H-----------------CEAPLA-AIVLS--------SNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       160 ~v~i~d~~~~--~~-----~-----------------~~~~i~-~~~~s--------~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                      .|..++....  ..     .                 .-.... .+++.        ++|.+.++=...++ |+.++ .+
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-~~  370 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-PQ  370 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-TT
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-CC
Confidence            8999876521  10     0                 001122 55553        45665555444444 68888 45


Q ss_pred             CceeEeecc------CC-c--------ceeEEEEEeecC-CCcccEEEEEeCCCcEEEEecC
Q 019672          207 ATKSYSFRR------GT-Y--------PSTIFSLSFGQS-MQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       207 ~~~~~~~~~------~~-~--------~~~i~~l~fs~d-g~~~~~las~s~dg~v~iw~l~  252 (337)
                      |+.......      +. .        -.....|+++|+ +.   ++++-...+.|+.++++
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~---lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC---FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE---EEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE---EEEEECCCCeEEEEccC
Confidence            654332221      10 0        013678999994 65   66666667788888764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.60  E-value=0.0043  Score=56.19  Aligned_cols=141  Identities=15%  Similarity=0.201  Sum_probs=92.2

Q ss_pred             EcCCeEEEEECCeEEEEECCCCeeeeeecCCC--CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc---c-----
Q 019672          102 LNKKRLVIVLREKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---S-----  171 (337)
Q Consensus       102 ~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~---~-----  171 (337)
                      -+...++++.++.||.-++......+.+..+.  ....+.-+..+|.+.+||..|   +.+|.|..+..+.   .     
T Consensus        30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---CCeEEEEEecCccccCcccccc
Confidence            35667888889999999987544444444431  111233456677888999987   5789998876221   0     


Q ss_pred             --c-------------ccCceEEEEeCCC---CCEEEEEeCCCcEEEEEEcCCCce-eEeeccC-------CcceeEEEE
Q 019672          172 --H-------------CEAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEATK-SYSFRRG-------TYPSTIFSL  225 (337)
Q Consensus       172 --~-------------~~~~i~~~~~s~d---g~~lat~s~dg~~i~vwd~~~~~~-~~~~~~~-------~~~~~i~~l  225 (337)
                        .             ...+|..+.|+|-   |..|++-.+|++ ||+||+..... ...+.+.       .....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence              0             0256999999994   568999999987 79999985321 1123211       111458999


Q ss_pred             EeecCCCcccEEEEEe--CCCcEEEE
Q 019672          226 SFGQSMQFQDILVATS--SSGSLHVF  249 (337)
Q Consensus       226 ~fs~dg~~~~~las~s--~dg~v~iw  249 (337)
                      +|++++-   .|-..+  ..|.|+-.
T Consensus       186 ~Fg~~~l---TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGL---TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSS---CEEEEECTTSCEEEEE
T ss_pred             EEcCCCc---EEEEEecCCCCCEEEE
Confidence            9999775   565544  77877544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.59  E-value=0.038  Score=49.81  Aligned_cols=171  Identities=11%  Similarity=-0.035  Sum_probs=100.3

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCcc
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNAC  148 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  148 (337)
                      .+.|+..++..+...........+.++++++  +.++++.  .+.|+.+++........+... ..+.+ +++.  +.+.
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g-lavd--~~~g  171 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG-LAVD--WVHD  171 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC-EEEE--TTTT
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE-EEEE--eCCC
Confidence            4678888887766554444445678888874  4566665  578999998765433333222 12333 3444  3233


Q ss_pred             EEEEcCCCCccEEEEEEccCCccc---cc--CceEEEEeCCCCCEEEEEe-CC-CcEEEEEEcCCCceeEeeccCCccee
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSH---CE--APLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~---~~--~~i~~~~~s~dg~~lat~s-~d-g~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                      .|..+.. ..+.|.+.++......   ..  ...+.++++|.+..|..+. .. +. |..+++..... ..+... .-..
T Consensus       172 ~lY~~d~-~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~~~-~~~~~~-~~~~  247 (386)
T 3v65_B          172 KLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGR-RIIADT-HLFW  247 (386)
T ss_dssp             EEEEEET-TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSC-EEEECS-SCSC
T ss_pred             eEEEEcC-CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCCCc-EEEEEC-CCCC
Confidence            3333332 3678888887643221   11  5678999999766555444 33 44 56777754322 222111 1123


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ...|+|+|++.  .++.+-+..+.|..++++.
T Consensus       248 PnGlavd~~~~--~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          248 PNGLTIDYAGR--RMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEEEEGGGT--EEEEEETTTTEEEEECTTS
T ss_pred             eeeEEEeCCCC--EEEEEECCCCEEEEEeCCC
Confidence            57899998666  2555656678899999864

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.53  E-value=0.015  Score=57.31  Aligned_cols=238  Identities=10%  Similarity=-0.039  Sum_probs=119.6

Q ss_pred             CeEEEEEc-CCCCEEEEEcCC------ceEEEeCCCC-cEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            9 PVFFVSFN-QDNSGFALSTKD------GFKIFDSSTG-RLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         9 ~v~~~~fs-~dg~~la~g~~~------g~~vw~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+...+|| |||++||-+.+.      .++++|++++ +.+.. ... ......+.+++..++++.....  .....|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~--~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDET--LRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTT--CCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCC--CCCCEEEE
Confidence            47789999 999998855432      2688899998 63211 110 0122456677778877764210  01247888


Q ss_pred             EECCCCCE--EEEEEc--CCceeEEEEcCCe--EEEEE----CCeEEEEECCCCe-ee--eeecCCCCCceEEEEeeCCC
Q 019672           80 FNTTTGTA--LRELNF--LTSILAVRLNKKR--LVIVL----REKTYIYDANTLA-IL--DTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        80 wd~~~~~~--~~~~~~--~~~v~~i~~~~~~--~~v~~----d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~  146 (337)
                      +++.+++.  ...+..  ..-...+.+++++  +++..    ...|+++|+.++. ..  ..+... .........++..
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~~~~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQMHGT  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEEEETT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEEEeeeeC
Confidence            99987642  222222  2235567788765  44433    3378899997652 12  233211 1111223331222


Q ss_pred             ccEEEEcCCC--CccEEEEEEccCC---cc-c--ccC--ceEEEEeCCCCCEEEEEeCCCcE-EEEEEc-------CCCc
Q 019672          147 ACFLAVPAST--TKGSVLVYNVMEL---HS-H--CEA--PLAAIVLSSNGMYIATASEQGTI-IRVFLV-------SEAT  208 (337)
Q Consensus       147 ~~~la~~~~~--~dg~v~i~d~~~~---~~-~--~~~--~i~~~~~s~dg~~lat~s~dg~~-i~vwd~-------~~~~  208 (337)
                      +.+++.....  ....|..+|+.+.   +. +  +..  .+..+.+. .+.++++...+|.. |.++|+       .+++
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~  409 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGT  409 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence            3333333321  2346777787642   22 2  112  35556665 23455666677742 345665       3443


Q ss_pred             eeEeeccCCcceeEEEEEe----ecCCCcccEEEEEeCC---CcEEEEecCCC
Q 019672          209 KSYSFRRGTYPSTIFSLSF----GQSMQFQDILVATSSS---GSLHVFSPGFA  254 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~f----s~dg~~~~~las~s~d---g~v~iw~l~~~  254 (337)
                      .+..+.... ...+..+.+    ++++.  .++++.+..   ..+..+|+.++
T Consensus       410 ~~~~l~l~~-~~~~~~~~~~~~~~~~~~--~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          410 GLREVVMEE-PIFTVHLVESQMLEYEEP--TFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             CCEECCCCC-SSCEEEECGGGCCCTTCS--CEEEEEEETTEEEEEEEECTTTC
T ss_pred             cceEECCCC-ceeEEEeccCcccCCCCC--EEEEEEeCCCCCCEEEEEECCCC
Confidence            133332111 112333433    34655  255555444   34666666544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.50  E-value=0.054  Score=49.11  Aligned_cols=224  Identities=7%  Similarity=-0.045  Sum_probs=126.3

Q ss_pred             CEEEEEcCCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC----CEEEEEE-c
Q 019672           20 SGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELN-F   93 (337)
Q Consensus        20 ~~la~g~~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~----~~~~~~~-~   93 (337)
                      .+|+.+....++..++++....... ......-+++.+..+.+.++..      ..+.|..+++...    .....+. .
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEECSS
T ss_pred             ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEeCC
Confidence            3566666677888888766433222 2234444555555666666654      3678888888652    1222222 1


Q ss_pred             CCceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC
Q 019672           94 LTSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (337)
Q Consensus        94 ~~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~  169 (337)
                      .....+++++  .+.++++.  .+.|.+.++........+....  ....+++.+|.+..|..+.....+.|...++...
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~--~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS--CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC--CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            2345677776  45666665  5689999987553332232111  1233445555444555443212467888887643


Q ss_pred             ccc---cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCC
Q 019672          170 HSH---CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSS  243 (337)
Q Consensus       170 ~~~---~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~d  243 (337)
                      ...   ..  ...+.|+++|++..|..+......|..+|+..... ..+... ........|++. .+.   ++.+-...
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~---lywtd~~~  310 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK---VFWTDIIN  310 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTE---EEEEESSS
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCE---EEEecCCC
Confidence            321   11  56789999998887777765544578889864332 233211 111224567774 344   67777777


Q ss_pred             CcEEEEecCCCcc
Q 019672          244 GSLHVFSPGFAIN  256 (337)
Q Consensus       244 g~v~iw~l~~~~~  256 (337)
                      +.|..++..+++.
T Consensus       311 ~~V~~~~~~~G~~  323 (400)
T 3p5b_L          311 EAIFSANRLTGSD  323 (400)
T ss_dssp             CSEEEEESSSCCC
T ss_pred             CeEEEEEcCCCCc
Confidence            8899998655543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.49  E-value=0.048  Score=48.42  Aligned_cols=231  Identities=5%  Similarity=-0.088  Sum_probs=130.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~   87 (337)
                      .-+|.+..++ .+|..+....++..+++......... .....-+++.+..+.+.++..      ..+.|..+++..+..
T Consensus        35 ~~~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSC-CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSC
T ss_pred             CCcccccccC-ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec------cCCceEEEecCCCCc
Confidence            3456666663 34555555667777776654432222 233344455555566666554      367899999876653


Q ss_pred             EEEEEcC-CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc-cEE
Q 019672           88 LRELNFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK-GSV  161 (337)
Q Consensus        88 ~~~~~~~-~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d-g~v  161 (337)
                      ...+... ....+++++  ...++++.  .+.|.+.++........+...  .....+++.+|.+..|..+.. .. +.|
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--l~~P~~iavdp~~g~ly~td~-~~~~~I  184 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDW-GNTPRI  184 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT--CSCEEEEEEETTTTEEEEEEC-SSSCEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC--CCCcceEEEecCcCeEEEecc-CCCCEE
Confidence            3322221 234566765  45566665  568999998654322222211  112234455554445554443 24 788


Q ss_pred             EEEEccCCccc---cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccE
Q 019672          162 LVYNVMELHSH---CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       162 ~i~d~~~~~~~---~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~  236 (337)
                      ..+++......   ..  ...+.|+++|++..|..+......|..+|+..... ..+.... ......|++. ++.   .
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~-~~~P~giav~-~~~---l  258 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQG-LPHPFAITVF-EDS---L  258 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS-CSSEEEEEEE-TTE---E
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCC-CCCceEEEEE-CCE---E
Confidence            88887643221   11  45789999997777766665544578889764332 2221111 1234677773 455   6


Q ss_pred             EEEEeCCCcEEEEecCCCc
Q 019672          237 LVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       237 las~s~dg~v~iw~l~~~~  255 (337)
                      +.+-...+.|..++..+++
T Consensus       259 y~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEETTTTEEEEEETTTCC
T ss_pred             EEecCCCCeEEEEEccCCC
Confidence            7777777888888854443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.48  E-value=0.023  Score=49.30  Aligned_cols=168  Identities=10%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-EEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCc
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (337)
                      ..++|..||... +....+........++++++. ++++.  .+  .|..+|..+++........ .....-.....+++
T Consensus        51 ~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~  128 (306)
T 2p4o_A           51 EVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDT  128 (306)
T ss_dssp             TTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSS
T ss_pred             CCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCC
Confidence            367899999875 445555566678889997654 55554  22  4777787777653322221 11111222223334


Q ss_pred             cEEEEcCCCCccEEEEEEccCCc--cc------------cc-CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC-Cce--
Q 019672          148 CFLAVPASTTKGSVLVYNVMELH--SH------------CE-APLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATK--  209 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~--~~------------~~-~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~-~~~--  209 (337)
                      ..+++..  .++.|.++|...++  ..            .. ...+.+  +|||++|..+......|..+|+.. ++.  
T Consensus       129 ~~~v~d~--~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~  204 (306)
T 2p4o_A          129 QYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE  204 (306)
T ss_dssp             EEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC
T ss_pred             cEEEEEC--CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc
Confidence            3444432  36888888876431  10            00 234555  888887766655444478999864 331  


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      ...+...   .....|+++++|+   ++++....+.|.+++.+
T Consensus       205 ~~~~~~~---~~P~gi~vd~dG~---l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          205 PEIFVEQ---TNIDDFAFDVEGN---LYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             CEEEEES---CCCSSEEEBTTCC---EEEECBTTCCEEEECTT
T ss_pred             cEEEecc---CCCCCeEECCCCC---EEEEeCCCCeEEEECCC
Confidence            1111111   1134588999998   77777778899999854

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.46  E-value=0.04  Score=46.66  Aligned_cols=191  Identities=13%  Similarity=0.099  Sum_probs=113.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC--CceeEEEEcCCeEE-EEE--CCeEEEEECC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKRLV-IVL--REKTYIYDAN  121 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~-v~~--d~~i~i~d~~  121 (337)
                      ....-+.+.++.+.+..+..      .++.|...|.. ++.+..+...  ...-+|++.+++.+ ++.  ++.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d------~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN------KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE------TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEEC------CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34555666666777777776      37899999998 8888888765  46778888665544 554  5688999875


Q ss_pred             CCe---eeeeecC----CCCCceEEEEeeCCCccEEEEcCCCCcc-EEEEEEc--cC--Cccc---------ccCceEEE
Q 019672          122 TLA---ILDTIDT----VPNLKGLCAFSPSLNACFLAVPASTTKG-SVLVYNV--ME--LHSH---------CEAPLAAI  180 (337)
Q Consensus       122 ~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~~~dg-~v~i~d~--~~--~~~~---------~~~~i~~~  180 (337)
                      ...   .+..+..    .....+.-+++.++.+..|.++.- .+. .|..|+-  .+  ....         ....+.++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E-~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE-KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE-SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC-cCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            543   2233321    122234556677766644444331 122 4555541  11  0110         11467899


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc--CCcc-----eeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          181 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--GTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       181 ~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~--~~~~-----~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +++|.-..|..-|.....+-++|.+ |+.+..+..  +.+.     ..-..|+|.++|+   ++++ |.-+.+++|.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~---lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN---IYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC---EEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC---EEEE-cCCceEEEEE
Confidence            9999655555555555556688865 555544432  2111     2357899999998   5555 6667666664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.41  E-value=0.056  Score=47.19  Aligned_cols=223  Identities=7%  Similarity=-0.060  Sum_probs=124.5

Q ss_pred             EEEEEcCCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC---CCEEEE-EEcC-
Q 019672           21 GFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT---GTALRE-LNFL-   94 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~---~~~~~~-~~~~-   94 (337)
                      +|+.+..+.++..++++.+..... ......-+.+.+..+.+.++..      ..++|..+++..   +..... +... 
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            466677778888898876543322 1233334455555566666554      368999999875   122222 2211 


Q ss_pred             CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ....+++++  .+.++++.  .+.|.++++........+....  .....++.+|.+..+..+.....+.|..+++....
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC--CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            244677775  45666665  5789999986543222222111  12234455554444444432123788888875332


Q ss_pred             c--cc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          171 S--HC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       171 ~--~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      .  ..   -...+.++++|++..|..+......|..+|+... ....+... ........|++. .+.   ++.+-...+
T Consensus       155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~---ly~~d~~~~  229 (316)
T 1ijq_A          155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDK---VFWTDIINE  229 (316)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTE---EEEEETTTT
T ss_pred             eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCE---EEEEECCCC
Confidence            1  11   1567899999987777666654445788998643 22333211 111224667775 455   677777778


Q ss_pred             cEEEEecCCCcc
Q 019672          245 SLHVFSPGFAIN  256 (337)
Q Consensus       245 ~v~iw~l~~~~~  256 (337)
                      .|..++..+++.
T Consensus       230 ~V~~~~~~~g~~  241 (316)
T 1ijq_A          230 AIFSANRLTGSD  241 (316)
T ss_dssp             EEEEEETTTCCC
T ss_pred             eEEEEeCCCCcc
Confidence            899998755543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.35  E-value=0.065  Score=46.76  Aligned_cols=171  Identities=11%  Similarity=-0.005  Sum_probs=99.8

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCC----CeeeeeecCC-CCCceEEEEeeC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANT----LAILDTIDTV-PNLKGLCAFSPS  144 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~----~~~~~~~~~~-~~~~~~~~~~~~  144 (337)
                      .+.|+..|+.+++....+..-..+.++.+++  +.++++.  .+.|+.+++..    ......+... ..+.+ +++.  
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g-lavd--   85 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG-LAVD--   85 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE-EEEE--
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE-EEEe--
Confidence            4679999998877655555455678888874  4566665  57999999875    2222222211 22323 3443  


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccc---c--cCceEEEEeCCCCCEEEEEeC-C-CcEEEEEEcCCCceeEeeccCC
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSH---C--EAPLAAIVLSSNGMYIATASE-Q-GTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~---~--~~~i~~~~~s~dg~~lat~s~-d-g~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      +.+..|..+.. ..+.|.++|+......   .  ......++++|++.+|..+.. . +. |...++. |.....+... 
T Consensus        86 ~~~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-  161 (316)
T 1ijq_A           86 WIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-  161 (316)
T ss_dssp             TTTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-
T ss_pred             ecCCeEEEEEC-CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-
Confidence            32223333322 3688999998653221   1  156789999996665544443 2 44 5677764 4433333211 


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .-.....|+++|++.  .++.+-+..+.|..+|++.
T Consensus       162 ~~~~P~gla~d~~~~--~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          162 NIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             SCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             CCCCceEEEEeccCC--EEEEEECCCCeEEEEecCC
Confidence            112367899998776  2555556667899999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.33  E-value=0.014  Score=56.53  Aligned_cols=233  Identities=9%  Similarity=0.034  Sum_probs=115.9

Q ss_pred             EEEEcC-CCCEEEEEcCC------------ceEEEeCCCCcE--EEEEee-C--CEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672           12 FVSFNQ-DNSGFALSTKD------------GFKIFDSSTGRL--CYERAV-G--AFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus        12 ~~~fs~-dg~~la~g~~~------------g~~vw~~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ++++.+ +|+.++.|+.+            .+.+||..+++-  +..... +  ......+..+..++ +++|     ..
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~ly-v~GG-----~~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV-VTGG-----ND  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEE-EECS-----SS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEE-EeCC-----CC
Confidence            556777 88888877532            247899887642  221111 1  11112333444443 3444     24


Q ss_pred             CceEEEEECCCCCEEEEEEcCC---ceeEEEEcCCeEEEEEC--------CeEEEEECCCCeeeeeecC---CCCCceEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLT---SILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDT---VPNLKGLC  139 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~v~~d--------~~i~i~d~~~~~~~~~~~~---~~~~~~~~  139 (337)
                      ++.+.+||..+++....-..+.   ....+.+..+.+++.+.        +.+.+||..+.+-.. +..   .+-+....
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADK  342 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCT
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccc
Confidence            5689999998876543222222   12233342445555442        469999998764221 110   00000000


Q ss_pred             EEeeCCCccEEEEcCCC-------CccEEEEEEccCCccccc--------------CceEEEEeC-CCCCEEEEEeCCC-
Q 019672          140 AFSPSLNACFLAVPAST-------TKGSVLVYNVMELHSHCE--------------APLAAIVLS-SNGMYIATASEQG-  196 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~-------~dg~v~i~d~~~~~~~~~--------------~~i~~~~~s-~dg~~lat~s~dg-  196 (337)
                      ......++..+++++.+       ....+..||..+..-...              ..-.++.|. .+++.++.|+.++ 
T Consensus       343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            00011222233333310       134678888876542110              122444554 4788888887542 


Q ss_pred             ------c---EEEEEEcCCCceeEee-ccCCcceeEEEEEeecCCCcccEEEEEeCC-----------CcEEEEecCCC
Q 019672          197 ------T---IIRVFLVSEATKSYSF-RRGTYPSTIFSLSFGQSMQFQDILVATSSS-----------GSLHVFSPGFA  254 (337)
Q Consensus       197 ------~---~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----------g~v~iw~l~~~  254 (337)
                            .   .|.+||..+.+-.... ..-.....-.+++..|+|+   +++.|+.+           .++.+||..+.
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~  498 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---TFITGGQRRGIPFEDSTPVFTPEIYVPEQD  498 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---EEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---EEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence                  1   3578888776543221 0001111123445668999   88888854           46889997653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=0.11  Score=48.40  Aligned_cols=240  Identities=7%  Similarity=0.033  Sum_probs=126.0

Q ss_pred             CeEEEEEcC-CCCEEEEEcCC--ceEEEeCCCCcEEEEEeeC-----CEEEEEE-------ccCCCEEEEEeCCCCCCCC
Q 019672            9 PVFFVSFNQ-DNSGFALSTKD--GFKIFDSSTGRLCYERAVG-----AFSIVEM-------LYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         9 ~v~~~~fs~-dg~~la~g~~~--g~~vw~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~g~~~~~~   73 (337)
                      .-..++|+| ++..|.++...  .+++.|++.+++..-....     ....+.+       ..+.+.+.+..........
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 45555555443  4678888877664433222     2455566       5566655554432000000


Q ss_pred             CceEEEEECCC-CCEE-----EEE-EcCCceeEEEEcC--CeEEEEE--CCeEEEEECC-------CCee----------
Q 019672           74 PRRLCLFNTTT-GTAL-----REL-NFLTSILAVRLNK--KRLVIVL--REKTYIYDAN-------TLAI----------  125 (337)
Q Consensus        74 d~~v~iwd~~~-~~~~-----~~~-~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~-------~~~~----------  125 (337)
                      ...|.+.+... ++..     ..+ .+. ....+++++  ..++++.  .+.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            12366665443 1211     111 222 234567776  4556655  6789999987       4443          


Q ss_pred             -eeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEcc--CCcc-----c--c---------------cCceE-E
Q 019672          126 -LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHS-----H--C---------------EAPLA-A  179 (337)
Q Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~--~~~~-----~--~---------------~~~i~-~  179 (337)
                       ...+...+.......++++|++..|..+.. ..+.|+.+|..  ....     .  .               -.... .
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~-~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI-NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEET-TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeC-CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence             112111111122345566777775444443 46888886543  2110     0  0               01233 5


Q ss_pred             EEeC-------CCCCEEEEEeCCCcEEEEEEcCCCceeEeec-c------------CCcc---------eeEEEEEeecC
Q 019672          180 IVLS-------SNGMYIATASEQGTIIRVFLVSEATKSYSFR-R------------GTYP---------STIFSLSFGQS  230 (337)
Q Consensus       180 ~~~s-------~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~-~------------~~~~---------~~i~~l~fs~d  230 (337)
                      ++..       ++|.+.++=+... .||.++ .+|. +.++- .            +...         .....|+++++
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~-rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNF-CVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGT-EEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEccccccccCCCeEEEEECCCC-EEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            5554       5666555544444 478888 5664 33331 1            1001         12678999997


Q ss_pred             -CCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          231 -MQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       231 -g~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                       |.   ++++=+....|+.++++....
T Consensus       455 ~g~---lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          455 KEM---FYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TTE---EEEEETTTTEEEEEEECCCC-
T ss_pred             CCE---EEEEeCCCCEEEEEECCCCcc
Confidence             76   677777778899999876543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.30  E-value=0.083  Score=46.84  Aligned_cols=171  Identities=11%  Similarity=-0.042  Sum_probs=99.4

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCCcc
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNAC  148 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  148 (337)
                      .+.|+..++..............+.++++++  +.++++.  .+.|+.+++........+... ..+.+ +++  ++.+.
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g-lav--d~~~g  128 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG-LAV--DWVHD  128 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE-EEE--ETTTT
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE-EEE--ecCCC
Confidence            3568888887665544444445678888874  4566665  578999998765433323221 22323 344  43333


Q ss_pred             EEEEcCCCCccEEEEEEccCCccc--c-c--CceEEEEeCCCCCEEEEEe-CC-CcEEEEEEcCCCceeEeeccCCccee
Q 019672          149 FLAVPASTTKGSVLVYNVMELHSH--C-E--APLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGTYPST  221 (337)
Q Consensus       149 ~la~~~~~~dg~v~i~d~~~~~~~--~-~--~~i~~~~~s~dg~~lat~s-~d-g~~i~vwd~~~~~~~~~~~~~~~~~~  221 (337)
                      .|..+.. ..+.|.+.++......  . .  ...+.++++|.+..|..+. .. +. |...++... ....+... .-..
T Consensus       129 ~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG~-~~~~~~~~-~~~~  204 (349)
T 3v64_C          129 KLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGS-GRRIIADT-HLFW  204 (349)
T ss_dssp             EEEEEET-TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-SCEESCCS-SCSC
T ss_pred             eEEEEcC-CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCCC-CcEEEEEC-CCCC
Confidence            3333332 3678999998654321  1 1  5578999999655544443 43 44 577777543 22222111 1223


Q ss_pred             EEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          222 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       222 i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ...|+|+|++.  .++.+-+..+.|..++++.
T Consensus       205 PnGla~d~~~~--~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          205 PNGLTIDYAGR--RMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             cceEEEeCCCC--EEEEEECCCCEEEEEeCCC
Confidence            67899998666  2555556677899999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.026  Score=51.81  Aligned_cols=149  Identities=9%  Similarity=0.018  Sum_probs=87.5

Q ss_pred             eeEEEEcC---CeEEEEEC-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC---CccEEEEEEccCC
Q 019672           97 ILAVRLNK---KRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMEL  169 (337)
Q Consensus        97 v~~i~~~~---~~~~v~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~dg~v~i~d~~~~  169 (337)
                      ...+++++   +.++++.. +.|+.+|+..++......   .....+.+++++++..|.++...   ....+.+++....
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            45677875   34445443 689999998765443333   22345666777777755544421   0113444443321


Q ss_pred             cc----c-ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE-EeC
Q 019672          170 HS----H-CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA-TSS  242 (337)
Q Consensus       170 ~~----~-~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las-~s~  242 (337)
                      ..    + .......++++| +|.++++-...+. |..++..++........+. ...-..|+|+|+|+   +|.. -..
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~---~lyv~d~~  290 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGN---YAYIVVVN  290 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECSS-SSCCEEEEECTTSS---EEEEEETT
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCC---EEEEEECC
Confidence            11    1 114567889999 7776666656666 6889988765422222211 12246799999998   5544 456


Q ss_pred             CCcEEEEecCC
Q 019672          243 SGSLHVFSPGF  253 (337)
Q Consensus       243 dg~v~iw~l~~  253 (337)
                      .+.|..++.+.
T Consensus       291 ~~~I~~~~~d~  301 (430)
T 3tc9_A          291 QHYILRSDYDW  301 (430)
T ss_dssp             TTEEEEEEEET
T ss_pred             CCEEEEEeCCc
Confidence            67899988753

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.20  E-value=0.015  Score=56.37  Aligned_cols=225  Identities=8%  Similarity=-0.012  Sum_probs=110.8

Q ss_pred             EEEEcCCCCEEEEEcCC--ceEEEeCCCCcEEEEEee--CCEEE-EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           12 FVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAV--GAFSI-VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~--g~~vw~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      ++++..+|+.+++|+.+  .+.+||..+.+-......  ..... +....+..++ +++|.......-+.+.+||..+++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iy-v~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVF-TIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEE-EECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEE-EEeCcccCCcccccceEeCCCCCc
Confidence            46778999999998854  379999876642211111  11111 2222244444 344411111123679999998876


Q ss_pred             EEEEE-----EcCCc-eeEEEEcCCeEEEEE-----------CCeEEEEECCCCeeeeeecCCC-------CCceEEEEe
Q 019672           87 ALREL-----NFLTS-ILAVRLNKKRLVIVL-----------REKTYIYDANTLAILDTIDTVP-------NLKGLCAFS  142 (337)
Q Consensus        87 ~~~~~-----~~~~~-v~~i~~~~~~~~v~~-----------d~~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~  142 (337)
                      ....-     ..... -.++....+.+++..           ...+..||..+..-........       .+....++.
T Consensus       326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~  405 (656)
T 1k3i_A          326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  405 (656)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence            44320     00000 000000112222211           3468889987664332221110       011112222


Q ss_pred             -eCCCccEEEEcCCCC------cc---EEEEEEccCCccc-------ccCc-eEEEEeCCCCCEEEEEeCC---------
Q 019672          143 -PSLNACFLAVPASTT------KG---SVLVYNVMELHSH-------CEAP-LAAIVLSSNGMYIATASEQ---------  195 (337)
Q Consensus       143 -~~~~~~~la~~~~~~------dg---~v~i~d~~~~~~~-------~~~~-i~~~~~s~dg~~lat~s~d---------  195 (337)
                       +..++.+++++|...      ..   .|.+||..+..-.       .... -.++++.|+|+.++.|+.+         
T Consensus       406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~  485 (656)
T 1k3i_A          406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  485 (656)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence             123566777777310      01   6788887654311       1121 2345667899999999854         


Q ss_pred             --CcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeC
Q 019672          196 --GTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       196 --g~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                        .. +.+||..+.+-.. +... ..+..-.+..+.|||+   +|+.|+.
T Consensus       486 ~~~~-v~~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~---v~v~GG~  530 (656)
T 1k3i_A          486 PVFT-PEIYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGR---VFNGGGG  530 (656)
T ss_dssp             BCCC-CEEEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSC---EEEEECC
T ss_pred             cccc-eEEEcCCCCceee-cCCCCCccccccHhhcCCCcE---EEecCCC
Confidence              23 5799987765321 1100 0011112344569999   8999985

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.19  E-value=0.1  Score=45.76  Aligned_cols=221  Identities=12%  Similarity=0.163  Sum_probs=109.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCc---EEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ....++++.|.+++..+++|....+ +...+.++   .+.. .......+..+.++.+.+.+++.       ++.|.. .
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~-------~g~i~~-S  104 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGE-------PPIMLH-T  104 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEE-------TTEEEE-E
T ss_pred             CCCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEEC-------CCeEEE-E
Confidence            3457999999988888887764433 33344443   2211 00112222233333444444432       343333 2


Q ss_pred             CCCCCEEEEEE----cCCceeEEEE-cCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           82 TTTGTALRELN----FLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        82 ~~~~~~~~~~~----~~~~v~~i~~-~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ...|+.=....    .+..+..|.+ .++.++++. ++.|+. ....++.-..+.. +....+.++...+++.+++++. 
T Consensus       105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~-~~~~~~~~~~~~~~~~~~~~g~-  181 (327)
T 2xbg_A          105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQ-EAIGVMRNLNRSPSGEYVAVSS-  181 (327)
T ss_dssp             SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEEC-SCCCCEEEEEECTTSCEEEEET-
T ss_pred             CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeec-CCCcceEEEEEcCCCcEEEEEC-
Confidence            22232111111    1234566665 345555555 444322 1122322222222 1223466677777777777654 


Q ss_pred             CCccEEE-EEEc--cCCccc---ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC--CcceeEEEEEe
Q 019672          156 TTKGSVL-VYNV--MELHSH---CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG--TYPSTIFSLSF  227 (337)
Q Consensus       156 ~~dg~v~-i~d~--~~~~~~---~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~l~f  227 (337)
                        .|.+. -.|-  .+-+..   ....+..++++|+++.++ ++.+|. +++.+...|+.-..+...  .....+.+++|
T Consensus       182 --~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~  257 (327)
T 2xbg_A          182 --RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAY  257 (327)
T ss_dssp             --TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred             --CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence              34443 3442  222222   125788999999998665 456775 455543334443333222  11124889999


Q ss_pred             ecCCCcccEEEEEeCCCcE
Q 019672          228 GQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v  246 (337)
                      .+++.   +++++. +|.|
T Consensus       258 ~~~~~---~~~~g~-~g~i  272 (327)
T 2xbg_A          258 RTPNE---VWLAGG-AGAL  272 (327)
T ss_dssp             SSSSC---EEEEES-TTCE
T ss_pred             cCCCE---EEEEeC-CCeE
Confidence            99887   666554 6766

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.18  E-value=0.084  Score=44.62  Aligned_cols=153  Identities=14%  Similarity=0.090  Sum_probs=94.3

Q ss_pred             CceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ..+.++++++  +.++++.  ++.|...|.. ++.++.+.... ....-.++..+++.++++.-  .++.+.++++....
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDE--RDYAIYVISLTPNS  102 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEET--TTTEEEEEEECTTC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCC
Confidence            4688899985  4577766  4588888987 77777774321 12233445556666655543  35778888765432


Q ss_pred             c---c-----------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcC---CCceeEee-----ccCCcceeEEEEEee
Q 019672          171 S---H-----------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVS---EATKSYSF-----RRGTYPSTIFSLSFG  228 (337)
Q Consensus       171 ~---~-----------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~---~~~~~~~~-----~~~~~~~~i~~l~fs  228 (337)
                      .   .           .......|+++|+++.|.++.+... ..||.+.   ....+..+     ........+.+|+|+
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            1   0           1134689999999988888887765 3555553   11111111     111112236789999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          229 QSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       229 ~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      |...  .+++.......+.++|.+..
T Consensus       182 p~tg--~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          182 QQKN--TLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             TTTT--EEEEEETTTTEEEEECTTCC
T ss_pred             CCCC--eEEEEECCCCeEEEEcCCCC
Confidence            8776  36777777778899987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.16  E-value=0.055  Score=56.22  Aligned_cols=215  Identities=12%  Similarity=0.171  Sum_probs=126.4

Q ss_pred             eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCeEE
Q 019672           30 FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLV  108 (337)
Q Consensus        30 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~  108 (337)
                      +.|-|+.+.......... -...-|.+..+.+++-++        +++.|+|+++.+.++...++++|.--+| +++.+.
T Consensus        50 vvIidl~~~~~~~rrpi~-AdsAIMnP~~~iiALrag--------~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~  120 (1630)
T 1xi4_A           50 VVIIDMNDPSNPIRRPIS-ADSAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA  120 (1630)
T ss_pred             EEEEECCCCCCccccccc-chhhccCCCcceEEEecC--------CeEEEeehHHhhhhcccccCCCceEEEecCCCeeE
Confidence            566777665433221111 111224455667776654        7999999999999999999999887777 788899


Q ss_pred             EEECCeEEEEECCCC-eeeeeecCCC--CCceEEEEeeCCCccEEEEcCC-----CCccEEEEEEccCCccc----ccCc
Q 019672          109 IVLREKTYIYDANTL-AILDTIDTVP--NLKGLCAFSPSLNACFLAVPAS-----TTKGSVLVYNVMELHSH----CEAP  176 (337)
Q Consensus       109 v~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~-----~~dg~v~i~d~~~~~~~----~~~~  176 (337)
                      ++++..|+-|++... .+.+.+..+.  ....++.+..+++..+++..|-     ...|.+++|........    |-+.
T Consensus       121 lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~  200 (1630)
T 1xi4_A          121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAS  200 (1630)
T ss_pred             EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhh
Confidence            999999999999642 3444443332  2345777888888888886651     13588999987654321    1111


Q ss_pred             eEEEEe--CC-CCCEEEEEeC--CCcEEEEEEcCCC-ceeEeec-------cCC--cceeEEEEEeecCCCcccEEEEEe
Q 019672          177 LAAIVL--SS-NGMYIATASE--QGTIIRVFLVSEA-TKSYSFR-------RGT--YPSTIFSLSFGQSMQFQDILVATS  241 (337)
Q Consensus       177 i~~~~~--s~-dg~~lat~s~--dg~~i~vwd~~~~-~~~~~~~-------~~~--~~~~i~~l~fs~dg~~~~~las~s  241 (337)
                      -..+.+  ++ ..+.++-+..  .|.-++|-++... ..-..|.       ...  ...--.++..|+.-.   .+..-+
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g---~iy~it  277 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLIT  277 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC---EEEEEe
Confidence            111111  01 1112222211  1223577777432 1001111       000  001123567777666   788888


Q ss_pred             CCCcEEEEecCCCcc
Q 019672          242 SSGSLHVFSPGFAIN  256 (337)
Q Consensus       242 ~dg~v~iw~l~~~~~  256 (337)
                      .-|.||+||+.++..
T Consensus       278 k~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          278 KYGYIHLYDLETGTC  292 (1630)
T ss_pred             cCceEEEEecccchh
Confidence            999999999998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.13  E-value=0.044  Score=48.05  Aligned_cols=152  Identities=12%  Similarity=0.107  Sum_probs=96.3

Q ss_pred             eEEEEcC--CeEEEEE--CCeEEEEECCCCeeee-eecC----CCCCceEEEEee---CCCccEEEEcCC----------
Q 019672           98 LAVRLNK--KRLVIVL--REKTYIYDANTLAILD-TIDT----VPNLKGLCAFSP---SLNACFLAVPAS----------  155 (337)
Q Consensus        98 ~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~-~~~~----~~~~~~~~~~~~---~~~~~~la~~~~----------  155 (337)
                      -++.|++  ..++++.  .++|..||...+.... .+..    .........+..   ++++.++++...          
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            3566765  6677766  7899999987553322 2221    111123467777   677777664220          


Q ss_pred             -CCccEEEEEEcc---CCccccc------------------CceEEEEeCCCCCEEEEEeCC-CcEEEEEEcCCCceeEe
Q 019672          156 -TTKGSVLVYNVM---ELHSHCE------------------APLAAIVLSSNGMYIATASEQ-GTIIRVFLVSEATKSYS  212 (337)
Q Consensus       156 -~~dg~v~i~d~~---~~~~~~~------------------~~i~~~~~s~dg~~lat~s~d-g~~i~vwd~~~~~~~~~  212 (337)
                       ..+..|..||+.   +++....                  ...+.++.+++|+.-++++.- +.++ ..+.. |+.+..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~-rV~pd-G~~~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA-RVSAD-GKTVST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE-EECTT-SCCEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE-EEeCC-CCEEee
Confidence             015779999998   6654321                  248899999999999998887 6533 34443 333332


Q ss_pred             ecc----CCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          213 FRR----GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       213 ~~~----~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      +..    .....-.+.|+++|||.   .|++....|.+.-||+.+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~---~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSN---KLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTT---EEEEESSSSSEEEEECSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCC---EEEEEcCCCeEEEEcCCCC
Confidence            211    11111256889999999   7877777999999998843

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.91  E-value=0.23  Score=44.94  Aligned_cols=172  Identities=9%  Similarity=-0.008  Sum_probs=99.9

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCCC----eeeeeecCCCCCceEEEEeeCC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTL----AILDTIDTVPNLKGLCAFSPSL  145 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~  145 (337)
                      .+.|+..|+........+.....+.++++++  +.++++.  .+.|+.+++...    .....+...  ......++.++
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~--~~~p~glavD~  168 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGLAVDW  168 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS--CSCEEEEEEET
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC--CCCcccEEEEe
Confidence            4688888888766555555556788888874  5666665  578988888652    122222211  11233444444


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccc---c--cCceEEEEeCCCCCEEEEEe-C-CCcEEEEEEcCCCceeEeeccCCc
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSH---C--EAPLAAIVLSSNGMYIATAS-E-QGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~---~--~~~i~~~~~s~dg~~lat~s-~-dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      .+..|..+.. ..+.|.+.|+......   .  ......|+++|.+.+|.-+. . .+. |...++..... ..+... .
T Consensus       169 ~~~~lY~~d~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~~~-~~~~~~-~  244 (400)
T 3p5b_L          169 IHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDI-YSLVTE-N  244 (400)
T ss_dssp             TTTEEEEEET-TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSCSC-EEEECS-S
T ss_pred             cCCceEEEEC-CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCCcc-EEEEEC-C
Confidence            3333443333 4688999998754321   1  14578999999665555443 2 245 57788754332 222111 1


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      -.....|+++|++.  .++.+-+..+.|..+|++.
T Consensus       245 l~~P~glavd~~~~--~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          245 IQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             CSCEEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCC--EEEEEECCCCEEEEEeCCC
Confidence            12367899998776  1445545667899999864

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.86  E-value=0.42  Score=47.28  Aligned_cols=223  Identities=7%  Similarity=-0.042  Sum_probs=121.4

Q ss_pred             EEEEEcCCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC----EEEEEE-cC
Q 019672           21 GFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALRELN-FL   94 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~----~~~~~~-~~   94 (337)
                      +|+......++..+++..+..... ......-+++.+..+.+.++..      ..++|+.+++....    ....+. .-
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~------~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSC
T ss_pred             ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec------cceeEEEEeccCCCCCcceeEEEecCC
Confidence            455555566777777655432222 2233444555555566655554      36788888886531    122222 11


Q ss_pred             CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ....+|+++  .+.++++.  .+.|.+.++........+....  ....+++.+|.+..|..+.....+.|...++....
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l--~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC--CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            244566665  45677766  5689999987543322222111  12334555555445554432123778888886443


Q ss_pred             cc---cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCC
Q 019672          171 SH---CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSG  244 (337)
Q Consensus       171 ~~---~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg  244 (337)
                      ..   ..  ...+.|++++.+.+|..+......|...++..... ..+... ..-....+|++..+ .   ++.+-...+
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~-~---lYwtD~~~~  623 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-K---VFWTDIINE  623 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT-E---EEEEETTTT
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC-E---EEEEECCCC
Confidence            21   11  56889999987777777665544578888854333 333211 11122456776433 4   666666778


Q ss_pred             cEEEEecCCCcc
Q 019672          245 SLHVFSPGFAIN  256 (337)
Q Consensus       245 ~v~iw~l~~~~~  256 (337)
                      .|...+..++..
T Consensus       624 ~I~~~dk~tG~~  635 (791)
T 3m0c_C          624 AIFSANRLTGSD  635 (791)
T ss_dssp             EEEEEETTTCCC
T ss_pred             EEEEEeCCCCcc
Confidence            888888655543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.85  E-value=0.37  Score=47.32  Aligned_cols=226  Identities=11%  Similarity=0.092  Sum_probs=127.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      +...|+++.-+++|.. -.|+.+|+..||-...+..... ......+.++..+.+..+.++.       ++-+..+|..+
T Consensus        20 ~~n~V~~I~qD~~G~l-WigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT-------~~Gl~~yd~~~   91 (758)
T 3ott_A           20 EASVVSCFLQDSEGLI-WIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGT-------DNGILVYNYRA   91 (758)
T ss_dssp             SCCCEEEEEECTTSCE-EEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEE-------TTEEEEEETTT
T ss_pred             ccceEEEEEECCCCCE-EEEECCCccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEe-------CCCeEEEeCCC
Confidence            3567999998988864 4567889988874332211100 0111122233333333334443       34588899877


Q ss_pred             CCEEEEE-EcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeec---CCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           85 GTALREL-NFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTID---TVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        85 ~~~~~~~-~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      .+..... .....|.++....+.+.+++.+.+..||..+.+.. .+.   .......+.++..+.++.+.+...   .| 
T Consensus        92 ~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---~G-  166 (758)
T 3ott_A           92 DRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTY---NG-  166 (758)
T ss_dssp             TEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEET---TE-
T ss_pred             CEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeC---CC-
Confidence            6432100 01234776766677888888778999998765432 221   011123466777766665554332   34 


Q ss_pred             EEEEEccCCcccc----------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC
Q 019672          161 VLVYNVMELHSHC----------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  230 (337)
Q Consensus       161 v~i~d~~~~~~~~----------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d  230 (337)
                      +..+|..+.+...          ...|.++..++++..|-.|+..|  +..+|..+++.. .+.. .....|.++...++
T Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G--l~~~~~~~~~~~-~~~~-l~~~~i~~i~~d~~  242 (758)
T 3ott_A          167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY--LFQYFPSTGQIK-QTEA-FHNNSIKSLALDGN  242 (758)
T ss_dssp             EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE--EEEEETTTTEEE-EEEE-EEEEEEEEEEECTT
T ss_pred             HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCC--CeEEcCCCCeEE-eccC-CCCCeEEEEEEcCC
Confidence            7778876543211          13488998888776444455444  357898776532 2211 11335888988888


Q ss_pred             CCcccEEEEEeCCCcEEEEecCC
Q 019672          231 MQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       231 g~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |.    |-.|+.+| +.+++..+
T Consensus       243 g~----lWigT~~G-l~~~~~~~  260 (758)
T 3ott_A          243 GD----LLAGTDNG-LYVYHNDT  260 (758)
T ss_dssp             CC----EEEEETTE-EEEECCTT
T ss_pred             CC----EEEEeCCc-eeEEecCC
Confidence            87    44445544 77777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.82  E-value=0.59  Score=48.34  Aligned_cols=231  Identities=11%  Similarity=0.091  Sum_probs=122.5

Q ss_pred             CCCeEEEEEcCC------CCEEEEEcC-Cc-eEEEeCCCCcEEEEEeeC------CEEEEEEccCCCEEEEEeCCCCCCC
Q 019672            7 SYPVFFVSFNQD------NSGFALSTK-DG-FKIFDSSTGRLCYERAVG------AFSIVEMLYSSSLLAIVGAGEQPSL   72 (337)
Q Consensus         7 ~~~v~~~~fs~d------g~~la~g~~-~g-~~vw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~   72 (337)
                      +.+|.|+++.|.      ++++|+|.. ++ ++|+++.+.+.+......      .+.++.+  .+....+++-      
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~--~~~~~L~igl------  624 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF--ESSHYLLCAL------  624 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE--TTEEEEEEEE------
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe--CCCcEEEEEe------
Confidence            457999999864      368999985 54 799999887766544332      1222332  3334445554      


Q ss_pred             CCceEEEE--ECCCCCEEEE--EE-cCCceeEEEEc--CCeE-EEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672           73 SPRRLCLF--NTTTGTALRE--LN-FLTSILAVRLN--KKRL-VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        73 ~d~~v~iw--d~~~~~~~~~--~~-~~~~v~~i~~~--~~~~-~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      .||.+.-+  |..+|+....  .. ...++.=..+.  .... +++++.-..+|--+ ++....-........++.|+..
T Consensus       625 ~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se  703 (1158)
T 3ei3_A          625 GDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSD  703 (1158)
T ss_dssp             TTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCS
T ss_pred             CCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcc
Confidence            37776544  4456655432  22 22344333332  2223 33335555555433 2222111111122344555432


Q ss_pred             C-CccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeCCCCCEEEEEeCC----------------------
Q 019672          145 L-NACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLSSNGMYIATASEQ----------------------  195 (337)
Q Consensus       145 ~-~~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s~dg~~lat~s~d----------------------  195 (337)
                      . .+.+++..    ++.++|..+......+.      ..+..++++|+.+.++.+..+                      
T Consensus       704 ~~~~g~v~~~----~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1158)
T 3ei3_A          704 GYPDSLALAN----NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL  779 (1158)
T ss_dssp             SSTTEEEEEC----SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred             cCCCcEEEEc----CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence            1 22233332    34588887654432221      667888888877755543311                      


Q ss_pred             --------------------------CcEEEEEEcCCCceeEeeccCCcce--eEEEEEeecCCCcccEEEEEe------
Q 019672          196 --------------------------GTIIRVFLVSEATKSYSFRRGTYPS--TIFSLSFGQSMQFQDILVATS------  241 (337)
Q Consensus       196 --------------------------g~~i~vwd~~~~~~~~~~~~~~~~~--~i~~l~fs~dg~~~~~las~s------  241 (337)
                                                ...|++.|-.+.+.+..+.......  .+..+.|..+.+  ++|++|.      
T Consensus       780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~--~~lvVGTa~~~~~  857 (1158)
T 3ei3_A          780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPN--TYFIVGTAMVYPE  857 (1158)
T ss_dssp             EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCC--CEEEEEEEECCTT
T ss_pred             hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCC--EEEEEEeeecCCC
Confidence                                      1236788888887776664433221  134445654433  3899887      


Q ss_pred             ----CCCcEEEEecC
Q 019672          242 ----SSGSLHVFSPG  252 (337)
Q Consensus       242 ----~dg~v~iw~l~  252 (337)
                          ..|.|++|++.
T Consensus       858 e~~~~~Gri~vf~v~  872 (1158)
T 3ei3_A          858 EAEPKQGRIVVFQYS  872 (1158)
T ss_dssp             CSSCCCEEEEEEEEE
T ss_pred             CCCCCceEEEEEEEE
Confidence                35789999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.52  E-value=0.09  Score=48.18  Aligned_cols=149  Identities=10%  Similarity=0.030  Sum_probs=85.2

Q ss_pred             eeEEEEcC----CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-C-ccEEEEEEccCC
Q 019672           97 ILAVRLNK----KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-T-KGSVLVYNVMEL  169 (337)
Q Consensus        97 v~~i~~~~----~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~-dg~v~i~d~~~~  169 (337)
                      ...+++++    ..++++. .+.|+.+|+.+++.......   ......++.++++.++++.... . ...+...+....
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~---~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN---IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC---CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC---CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            45788886    3455554 37899999977765543332   2234555666676644443210 0 112333333222


Q ss_pred             cc----c-ccCceEEEEeCC-CCCEEEEEeCCCcEEEEEEcCCCceeEee-ccCCcceeEEEEEeecCCCcccEE-EEEe
Q 019672          170 HS----H-CEAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSF-RRGTYPSTIFSLSFGQSMQFQDIL-VATS  241 (337)
Q Consensus       170 ~~----~-~~~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~fs~dg~~~~~l-as~s  241 (337)
                      ..    . .......++++| +|.+.++-..++. |+.+|..+++....+ ..+. ...-..|+|+|+|+   +| ++-.
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~-~~~~~~ia~dpdG~---~LYvad~  292 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDT-KGSNFHIVWHPTGD---WAYIIYN  292 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSC-CSSCEEEEECTTSS---EEEEEET
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCC-CCCcccEEEeCCCC---EEEEEeC
Confidence            11    0 114457789999 7776666556665 688998877652222 2221 11234699999998   54 4445


Q ss_pred             CCCcEEEEecCC
Q 019672          242 SSGSLHVFSPGF  253 (337)
Q Consensus       242 ~dg~v~iw~l~~  253 (337)
                      ..+.|+.++++.
T Consensus       293 ~~~~I~~~~~d~  304 (433)
T 4hw6_A          293 GKHCIYRVDYNR  304 (433)
T ss_dssp             TTTEEEEEEBCT
T ss_pred             CCCEEEEEeCCC
Confidence            567899988763

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.47  E-value=0.15  Score=47.44  Aligned_cols=151  Identities=10%  Similarity=0.051  Sum_probs=87.3

Q ss_pred             eeEEEEcC---CeEEEEEC--CeEEEEECCCCeeeeeecCCC-CCceEEEEee-------CCCccEEEEcCCCC-----c
Q 019672           97 ILAVRLNK---KRLVIVLR--EKTYIYDANTLAILDTIDTVP-NLKGLCAFSP-------SLNACFLAVPASTT-----K  158 (337)
Q Consensus        97 v~~i~~~~---~~~~v~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~la~~~~~~-----d  158 (337)
                      ...|+++|   +.++++.+  +.|++.|+.++.+...+.... .......+++       ++++..|.++....     .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            45788886   35666663  478889988776554433221 1223556666       67776555554311     1


Q ss_pred             cEEEEEEccC-Cccc--------cc-CceEEEEeCC-CCCEEEEEeCCCcEEEEEEcC-------CCce-----------
Q 019672          159 GSVLVYNVME-LHSH--------CE-APLAAIVLSS-NGMYIATASEQGTIIRVFLVS-------EATK-----------  209 (337)
Q Consensus       159 g~v~i~d~~~-~~~~--------~~-~~i~~~~~s~-dg~~lat~s~dg~~i~vwd~~-------~~~~-----------  209 (337)
                      ..|.+++... +...        .. .....++++| ++.++++-..++. |..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeecccccccccc
Confidence            2366665333 1111        11 3456889999 5555666666676 5789987       5553           


Q ss_pred             eEe-eccCCcceeEEEEEeecCCCcccE-EEEEeCCCcEEEEecC
Q 019672          210 SYS-FRRGTYPSTIFSLSFGQSMQFQDI-LVATSSSGSLHVFSPG  252 (337)
Q Consensus       210 ~~~-~~~~~~~~~i~~l~fs~dg~~~~~-las~s~dg~v~iw~l~  252 (337)
                      ... +..+ ....-+.|+|+|+|+   + +++-+....|+.++..
T Consensus       300 ~~~l~~~~-~~~~p~~ia~~p~G~---~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTIA-DPSWEFQIFIHPTGK---YAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEECS-SSSCCEEEEECTTSS---EEEEEETTTTEEEEEEEE
T ss_pred             cceeEecC-CCCCceEEEEcCCCC---EEEEEeCCCCEEEEEecC
Confidence            112 1111 122347899999998   5 4444566788886654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.47  E-value=0.17  Score=45.86  Aligned_cols=96  Identities=14%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             ccEEEEEEccCCc-c--cc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce------------eEeeccC
Q 019672          158 KGSVLVYNVMELH-S--HC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK------------SYSFRRG  216 (337)
Q Consensus       158 dg~v~i~d~~~~~-~--~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~------------~~~~~~~  216 (337)
                      ++.||.-++.... .  ++      ...|..+..||+|++||..+..+  |.|-.+..+..            .+.+..+
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEecCccccCcccccccccceeEEEcC
Confidence            4677777766322 1  11      13688899999999999998774  57888874321            1223222


Q ss_pred             C----cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          217 T----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       217 ~----~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                      .    .+.+|..+.|+|-+..-..|++-..|++|++||+....
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ  160 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence            1    13569999999876422389999999999999998743

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.43  E-value=0.32  Score=41.58  Aligned_cols=223  Identities=9%  Similarity=0.043  Sum_probs=107.3

Q ss_pred             CCCEEEEEc-CC------ceEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC--
Q 019672           18 DNSGFALST-KD------GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--   86 (337)
Q Consensus        18 dg~~la~g~-~~------g~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~--   86 (337)
                      ++..++.|+ .+      .+.+||+.+.+-......  .......... .+.+.+++|.. .....+.+.+||+.+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~-~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYD-GRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC-SSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCC-CCccCceEEEEECCCCCCC
Confidence            455666666 32      357888877642211110  0011111122 34555555421 11124679999998887  


Q ss_pred             -EEEEEEcCC--ceeEEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           87 -ALRELNFLT--SILAVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        87 -~~~~~~~~~--~v~~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                       ....-..+.  .-.++....+.+++.+       .+.+.+||+.+.+-...-..+.......+...  ++.+++.+|..
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence             433322221  1122223355666654       24689999877643221111111112222222  35566776632


Q ss_pred             C---ccEEEEEEccCCcccc--c-----CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCCceeE--eeccCCcce
Q 019672          157 T---KGSVLVYNVMELHSHC--E-----APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKSY--SFRRGTYPS  220 (337)
Q Consensus       157 ~---dg~v~i~d~~~~~~~~--~-----~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~~~~~--~~~~~~~~~  220 (337)
                      .   ...+.+||+.+.+-..  .     ..-.++.+  +++.++.|+.++.    .+.+||+.+.+-..  .+...  ..
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~--r~  245 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP--RC  245 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CB
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc--cc
Confidence            1   2468889987654211  1     12223333  5677777775431    25789998775322  11111  11


Q ss_pred             eEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF  253 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~  253 (337)
                      .-.++.  -+++   +++.|+.+     ..|.+||+++
T Consensus       246 ~~~~~~--~~~~---i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          246 YVGATV--LRGR---LYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SCEEEE--ETTE---EEEECCBCSSSBEEEEEEEETTT
T ss_pred             ceeEEE--ECCE---EEEEcCcCCCcccccEEEEcCCC
Confidence            111122  2666   77777655     3577787754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.43  E-value=0.011  Score=57.78  Aligned_cols=218  Identities=7%  Similarity=-0.024  Sum_probs=109.5

Q ss_pred             EcCCceEEEeCCCCcEEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC----CCEEEEEEc-CCcee
Q 019672           25 STKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT----GTALRELNF-LTSIL   98 (337)
Q Consensus        25 g~~~g~~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~----~~~~~~~~~-~~~v~   98 (337)
                      .....+++.++++.+...... ......+.+.+..+.+.++..      ..++|..+++..    ......+.. -....
T Consensus       383 ~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~  456 (699)
T 1n7d_A          383 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDIQAPD  456 (699)
T ss_dssp             CCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred             cCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence            334456666776654322211 122222344444455544433      367888888765    121111111 11234


Q ss_pred             EEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecC-CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--
Q 019672           99 AVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--  171 (337)
Q Consensus        99 ~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--  171 (337)
                      +|+++  .+.++++.  .+.|.++++........+.. ...+.+   ++.+|.+..|+.+.....+.|.++++.....  
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~g---iavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~  533 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRA---IVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  533 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCC---EECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcce---EEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence            55654  34555553  56899999865433222221 122333   3455544455554421236788877653221  


Q ss_pred             cc-c--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-CcceeEEEEEeecCCCcccEEEEEeCCCcEE
Q 019672          172 HC-E--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLH  247 (337)
Q Consensus       172 ~~-~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~l~fs~dg~~~~~las~s~dg~v~  247 (337)
                      +. .  ...+.|+|+|++.+|..+......|.++|+..... ..+... ........|++..+ .   ++.+....+.|.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~---lywtd~~~~~V~  608 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-K---VFWTDIINEAIF  608 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-E---EEEECSTTTCEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-E---EEEEeCCCCeEE
Confidence            11 1  45678999998666655554444478888864322 222211 11111334566544 3   666667778999


Q ss_pred             EEecCCCcc
Q 019672          248 VFSPGFAIN  256 (337)
Q Consensus       248 iw~l~~~~~  256 (337)
                      .++..+++.
T Consensus       609 ~~d~~~G~~  617 (699)
T 1n7d_A          609 SANRLTGSD  617 (699)
T ss_dssp             EEETTTEEE
T ss_pred             EEEccCCCc
Confidence            998765443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.42  E-value=0.3  Score=43.39  Aligned_cols=135  Identities=17%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             CCeEEEEECCC--Ceee-eeecC------CCCCceEEEEeeCCCc--cEEEEcCCCCccEEEEEEccCCc--ccc-----
Q 019672          112 REKTYIYDANT--LAIL-DTIDT------VPNLKGLCAFSPSLNA--CFLAVPASTTKGSVLVYNVMELH--SHC-----  173 (337)
Q Consensus       112 d~~i~i~d~~~--~~~~-~~~~~------~~~~~~~~~~~~~~~~--~~la~~~~~~dg~v~i~d~~~~~--~~~-----  173 (337)
                      ++.|.++|+.+  ++.. -.+..      ..++.++.... +.++  .++++.....+.+|.+|++....  ..+     
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~-d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI-DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE-CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE-CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            78899999873  2221 11221      12344443322 2223  23333322135778888765432  111     


Q ss_pred             ---cCceEEEEeCCCCCEEEEEeC---C------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          174 ---EAPLAAIVLSSNGMYIATASE---Q------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       174 ---~~~i~~~~~s~dg~~lat~s~---d------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                         -...+.+++.++|++.++..-   |            ..- +||-+..++ +..+..+  -..-+.++||||++  .
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g-~vyr~d~~~-~~~~~~~--l~~pNGia~spDg~--~  234 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS-FVTYYSPND-VRVVAEG--FDFANGINISPDGK--Y  234 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE-EEEEECTTC-CEEEEEE--ESSEEEEEECTTSS--E
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc-EEEEEECCe-EEEeecC--CcccCcceECCCCC--E
Confidence               166899999999998887651   1            111 334333332 2222111  12257899999998  2


Q ss_pred             EEEEEeCCCcEEEEecCC
Q 019672          236 ILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~  253 (337)
                      ++++-+..+.|+.|+++.
T Consensus       235 lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          235 VYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEGGGTEEEEEEECT
T ss_pred             EEEEeCCCCeEEEEEECC
Confidence            445556678999999874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.38  E-value=0.85  Score=44.72  Aligned_cols=216  Identities=9%  Similarity=0.114  Sum_probs=125.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      ...|+++.-.++|. |-+|+.+|+..||..+.+.....  ....+..+.  .+...+.+.+        .+.|..+|..+
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~--~~~g~lWigt--------~~Gl~~~~~~~  130 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMA--LQGDTLWLGA--------LNGLYTYQLQS  130 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEE--EETTEEEEEE--------TTEEEEEETTT
T ss_pred             CceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEE--ecCCcEEEEc--------CCcceeEeCCC
Confidence            45699988888774 66677889999998776432210  011233222  2233444433        23688899877


Q ss_pred             CCEEEEEE-----c-CCceeEEEEc-CCeEEEEECCeEEEEECCCCeeeeeecCCC----CCceEEEEeeCCCcc--EEE
Q 019672           85 GTALRELN-----F-LTSILAVRLN-KKRLVIVLREKTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLNAC--FLA  151 (337)
Q Consensus        85 ~~~~~~~~-----~-~~~v~~i~~~-~~~~~v~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~la  151 (337)
                      ++.. .+.     . ...|.++..+ ...+.+++.+-+..||..+.+.. .+..+.    ....+.++..+.++.  +++
T Consensus       131 ~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWig  208 (758)
T 3ott_A          131 RKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIG  208 (758)
T ss_dssp             CCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred             CeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEE
Confidence            6543 231     1 2357788776 45677777778888998766432 222111    112355666665443  443


Q ss_pred             EcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC------Ccce
Q 019672          152 VPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG------TYPS  220 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~------~~~~  220 (337)
                      +     ++-+..+|..+.+..     ....|.++...++|.+.+. +..|  +.+++..+++.. .+...      ....
T Consensus       209 t-----~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G--l~~~~~~~~~~~-~~~~~~~~~~~l~~~  279 (758)
T 3ott_A          209 T-----EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG--LYVYHNDTTPLQ-HIIHDSRNIQSLTNN  279 (758)
T ss_dssp             E-----EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE--EEEECCTTSCCE-EECCCTTCTTSCSCS
T ss_pred             E-----CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc--eeEEecCCCcEE-EEEcCCCCcCcCCcC
Confidence            3     234778887665432     1256889999999886654 4555  457887765432 22111      1123


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVF  249 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw  249 (337)
                      .|.++....+|.    |-.|+..| +.++
T Consensus       280 ~i~~i~~D~~g~----lWiGT~~G-l~~~  303 (758)
T 3ott_A          280 IIWNIFADQEHN----IWLGTDYG-ISLS  303 (758)
T ss_dssp             CEEEEEECTTCC----EEEEESSS-EEEE
T ss_pred             eEEEEEEcCCCC----EEEEeCCc-cccc
Confidence            599998888887    44455556 4444

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.33  E-value=0.6  Score=42.50  Aligned_cols=222  Identities=13%  Similarity=0.173  Sum_probs=119.1

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ...|.|-|+..+..+.+-.....  +.-.+|...+++.  ...+.|||+.+.+.+..+....   .+.-+.+-.+. .|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~Ad--sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e---~VvfWkWis~~-~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN-TVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCCS--EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-EEE
T ss_pred             CCeEEEEECCCCCcceecccccc--eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC---CceEEEecCCC-eEE
Confidence            55899999988765544333221  1123554444444  7799999999998888876543   34445543222 444


Q ss_pred             EcCCCCccEEEEEEccCCccc------c----cCceEEEEeCCCCCEEEEEe---CC----CcEEEEEEcCCCceeEeec
Q 019672          152 VPASTTKGSVLVYNVMELHSH------C----EAPLAAIVLSSNGMYIATAS---EQ----GTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~------~----~~~i~~~~~s~dg~~lat~s---~d----g~~i~vwd~~~~~~~~~~~  214 (337)
                      ...   +..|.-|++......      |    ...|..-..+++.++++..+   .+    |. +.+|..+.+.. +.+ 
T Consensus       121 lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~-mQLYS~er~~s-Q~i-  194 (494)
T 1bpo_A          121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKVS-QPI-  194 (494)
T ss_dssp             EEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE-EEEEESTTCCE-EEE-
T ss_pred             EEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce-EEEeecccccc-chh-
Confidence            443   567999998642211      1    16688888899999887543   23    44 57888876542 222 


Q ss_pred             cCCcceeEEEEEeecCCC--cccEEEEEeCC---CcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeee
Q 019672          215 RGTYPSTIFSLSFGQSMQ--FQDILVATSSS---GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN  289 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~--~~~~las~s~d---g~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  289 (337)
                      .|| -+.-..  |-.+|.  .++.++-+...   +.+||-++.++....++-.....--.+.|+..      ..++.   
T Consensus       195 eGh-aa~F~~--~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~------~DFPv---  262 (494)
T 1bpo_A          195 EGH-AASFAQ--FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ------NDFPV---  262 (494)
T ss_dssp             CCS-EEEEEE--EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST------TCCEE---
T ss_pred             eee-eeeeEE--EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc------cCcee---
Confidence            232 222212  212221  01134444333   78999999765211110000000001111110      11111   


Q ss_pred             ccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          290 AFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       290 ~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                      ++..+++-.-++..+.-|.+++|++.+-.+
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEecccCCEEEEEecCceEEEEeccccee
Confidence            111234457899999999999998866554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.32  E-value=0.53  Score=41.77  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=88.7

Q ss_pred             CCceEEEEECCC--CCEEEEEEcC--------CceeEEEEcC---C--eEEEEE----CCeEEEEECCCC----eeeeee
Q 019672           73 SPRRLCLFNTTT--GTALRELNFL--------TSILAVRLNK---K--RLVIVL----REKTYIYDANTL----AILDTI  129 (337)
Q Consensus        73 ~d~~v~iwd~~~--~~~~~~~~~~--------~~v~~i~~~~---~--~~~v~~----d~~i~i~d~~~~----~~~~~~  129 (337)
                      .++.|.++|+++  .+. .++...        -....|.+..   +  +++++.    +.+|.+|++...    ..+.++
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            488999999874  332 222211        1556677633   2  366664    347777776432    223333


Q ss_pred             cCCCCCceEEEEeeCCCccEEEEcCC---------------CCccEEEEEEccCCccccc--CceEEEEeCCCCCEEEEE
Q 019672          130 DTVPNLKGLCAFSPSLNACFLAVPAS---------------TTKGSVLVYNVMELHSHCE--APLAAIVLSSNGMYIATA  192 (337)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~la~~~~---------------~~dg~v~i~d~~~~~~~~~--~~i~~~~~s~dg~~lat~  192 (337)
                      ... .......+..++++.+.++...               ...|.|.-+|....+.+..  ..-+.++|||||+.|..+
T Consensus       160 ~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          160 RHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             CCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             ccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEE
Confidence            321 1122334444556665554320               0135566666532222222  567999999999988777


Q ss_pred             eCCCcEEEEEEcCC-Ccee--EeeccCCcceeEEEEEeec-CCCcccEEEEEeCC
Q 019672          193 SEQGTIIRVFLVSE-ATKS--YSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSS  243 (337)
Q Consensus       193 s~dg~~i~vwd~~~-~~~~--~~~~~~~~~~~i~~l~fs~-dg~~~~~las~s~d  243 (337)
                      ......|..|++.. |+..  ..+..   ....-.+++.+ +|.   +.+++..+
T Consensus       239 dt~~~~I~~~~~~~~g~l~~~~~~~~---~g~PDGi~vD~e~G~---lwva~~~~  287 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTLTPLRVLSF---DTLVDNISVDPVTGD---LWVGCHPN  287 (355)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEC---SSEEEEEEECTTTCC---EEEEEESC
T ss_pred             eCCCCeEEEEEECCCCcEecCEEEeC---CCCCceEEEeCCCCc---EEEEecCC
Confidence            65444578899863 4321  12211   23456788888 588   66655544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.25  E-value=1  Score=44.48  Aligned_cols=172  Identities=10%  Similarity=0.017  Sum_probs=98.0

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCCC----eeeeeec-CCCCCceEEEEeeC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTL----AILDTID-TVPNLKGLCAFSPS  144 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~----~~~~~~~-~~~~~~~~~~~~~~  144 (337)
                      ...|+..++........+.....+.+|+++.  +.++++.  .+.|+.+++...    .....+. ....+.+ +++.  
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G-LAvD--  479 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG-LAVD--  479 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE-EEEE--
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce-eeee--
Confidence            3567777877665544444445677888864  5566665  568888888642    1122222 1122323 3444  


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccc--c---cCceEEEEeCCCCCEEEEEe-CC-CcEEEEEEcCCCceeEeeccCC
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSH--C---EAPLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~--~---~~~i~~~~~s~dg~~lat~s-~d-g~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      ..+..|..+.. ..+.|.+.++......  .   ......|+++|.+.+|.-+. .. +. |.+.++... ....+... 
T Consensus       480 ~~~~~LY~tD~-~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~dG~-~~~~lv~~-  555 (791)
T 3m0c_C          480 WIHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV-DIYSLVTE-  555 (791)
T ss_dssp             TTTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-CEEEEECS-
T ss_pred             ecCCcEEEEec-CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecCCC-ceEEEEeC-
Confidence            33434444443 4789999998754321  1   15588999999755555443 33 44 677887643 33333221 


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .-.....|++++.+.  .++.+-...+.|..++++..
T Consensus       556 ~l~~P~GLavD~~~~--~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          556 NIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             SCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTSC
T ss_pred             CCCCceEEEEecCCC--eEEEEeCCCCcEEEEecCCC
Confidence            123467899997766  14444455677999988643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.23  E-value=0.55  Score=41.09  Aligned_cols=172  Identities=10%  Similarity=0.078  Sum_probs=95.5

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC---------ceeEEEE---cCC-eEEEEEC---------------CeEEEEECC---
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT---------SILAVRL---NKK-RLVIVLR---------------EKTYIYDAN---  121 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~---------~v~~i~~---~~~-~~~v~~d---------------~~i~i~d~~---  121 (337)
                      ..++|..||...+..... .++.         .+.+|.+   +++ +++++.+               ..+..||+.   
T Consensus        33 ~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~  111 (334)
T 2p9w_A           33 YKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSE  111 (334)
T ss_dssp             TTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCT
T ss_pred             cCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCC
Confidence            478999999876654332 3322         3578899   454 5555433               569999998   


Q ss_pred             CCeeeeeecCCC-----------CCceEEEEeeCCCccEEEEcCCCCc-cEEE----------EEEccCCcccccCceEE
Q 019672          122 TLAILDTIDTVP-----------NLKGLCAFSPSLNACFLAVPASTTK-GSVL----------VYNVMELHSHCEAPLAA  179 (337)
Q Consensus       122 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~la~~~~~~d-g~v~----------i~d~~~~~~~~~~~i~~  179 (337)
                      +++.+..+....           .......+..++++...++.+.  . +.|.          .|.+...........+.
T Consensus       112 tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nG  189 (334)
T 2p9w_A          112 NSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--GMPAIARVSADGKTVSTFAWESGNGGQRPGYSG  189 (334)
T ss_dssp             TCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSE
T ss_pred             CCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--CCCeEEEEeCCCCEEeeeeecCCCcccccCcce
Confidence            777665543210           1123456666777665554332  2 3333          34332211111234779


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeecc-CCc-c-eeEEE-EEeecCCCcccE-EEEEeCCCcEEEEecC
Q 019672          180 IVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRR-GTY-P-STIFS-LSFGQSMQFQDI-LVATSSSGSLHVFSPG  252 (337)
Q Consensus       180 ~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~-~~~-~-~~i~~-l~fs~dg~~~~~-las~s~dg~v~iw~l~  252 (337)
                      |+++|+|++|++....|.+ ..+|+.+...  +. ..+ +.. . ..... +.--.+|+   . |++.+..+.+.+.+-+
T Consensus       190 Iv~~pdg~~Liv~~~~g~L-~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~---vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          190 ITFDPHSNKLIAFGGPRAL-TAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNE---SVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEEETTTTEEEEESSSSSE-EEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTE---EEEEEEETTEEEEEECSS
T ss_pred             EEEeCCCCEEEEEcCCCeE-EEEcCCCCcceeec-ccccCCcccccCcccccccccCCE---EEEEEcCCCCEEEEECCC
Confidence            9999999988888778875 6789875433  21 110 110 0 01122 33335677   6 5555556666565543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.18  E-value=0.57  Score=40.79  Aligned_cols=222  Identities=9%  Similarity=-0.004  Sum_probs=122.6

Q ss_pred             EEEEEcCCceEEEeCCCCc--EEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE-EEE-EcCC
Q 019672           21 GFALSTKDGFKIFDSSTGR--LCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-REL-NFLT   95 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~-~~~-~~~~   95 (337)
                      +|+.+....++..++++..  ..... .......+++.+..+.+..+..      ..+.|..+++..+... ..+ ..-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET------TTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCCC
Confidence            4555666678888887763  11111 1122233444444566666554      4688999998766321 111 1112


Q ss_pred             ceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc
Q 019672           96 SILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (337)
Q Consensus        96 ~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~  171 (337)
                      ...+++++  ...++++.  .+.|.++++........+....  ..-.+++.+|.+..|..+.....+.|...++.....
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~--~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL--DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            34556665  45566665  5689999986532221221111  122344555544455444321257788888763221


Q ss_pred             --cc-c--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          172 --HC-E--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       172 --~~-~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                        +. .  ...+.|+++|++..|..+......|..+|+.... ...+..+. ......|++..+ .   ++.+-...+.|
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~-~~~P~glav~~~-~---lywtd~~~~~V  231 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGS-LPHPFALTLFED-I---LYWTDWSTHSI  231 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSC-CSCEEEEEEETT-E---EEEEETTTTEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCC-CCCceEEEEeCC-E---EEEEecCCCeE
Confidence              11 1  4568999999777777666554557888986432 22332211 123466777543 4   67777777889


Q ss_pred             EEEecCCCcc
Q 019672          247 HVFSPGFAIN  256 (337)
Q Consensus       247 ~iw~l~~~~~  256 (337)
                      ..++..+++.
T Consensus       232 ~~~~~~~G~~  241 (318)
T 3sov_A          232 LACNKYTGEG  241 (318)
T ss_dssp             EEEETTTCCS
T ss_pred             EEEECCCCCc
Confidence            9999866544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.99  E-value=0.71  Score=40.20  Aligned_cols=171  Identities=15%  Similarity=0.005  Sum_probs=96.1

Q ss_pred             CceEEEEECCCCC--EEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeee-eecC-CCCCceEEEEeeCC
Q 019672           74 PRRLCLFNTTTGT--ALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILD-TIDT-VPNLKGLCAFSPSL  145 (337)
Q Consensus        74 d~~v~iwd~~~~~--~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~-~~~~-~~~~~~~~~~~~~~  145 (337)
                      .+.|+..|+....  ....+..-....++.|++  +.++.+.  .+.|..+++....... .+.. ...+.+ +++  ++
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g-lav--d~   88 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG-LAC--DW   88 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE-EEE--ET
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE-EEE--Ec
Confidence            4689999988763  112222223566778864  5666665  5689999886653211 1111 112222 233  33


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCcc--cc---cCceEEEEeCCCCCEEEEEe-C-CCcEEEEEEcCCCceeEeeccCCc
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHS--HC---EAPLAAIVLSSNGMYIATAS-E-QGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~--~~---~~~i~~~~~s~dg~~lat~s-~-dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      .+..|..+.. ..+.|.++++.....  +.   ......++++|.+.+|..+. . .+. |...++. |.....+-.. .
T Consensus        89 ~~g~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~-I~r~~~d-G~~~~~~~~~-~  164 (318)
T 3sov_A           89 LGEKLYWTDS-ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK-IERAGMD-GSSRFIIINS-E  164 (318)
T ss_dssp             TTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE-EEEEETT-SCSCEEEECS-S
T ss_pred             CCCeEEEEEC-CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE-EEEEEcC-CCCeEEEEEC-C
Confidence            2223333332 367899999865322  11   15678999999755555544 2 344 5677765 3322222111 1


Q ss_pred             ceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          219 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       219 ~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      -..-+.|+|+|++.  .++.+-+..+.|..++++.
T Consensus       165 l~~Pnglavd~~~~--~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          165 IYWPNGLTLDYEEQ--KLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             CSCEEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             CCCccEEEEeccCC--EEEEEECCCCEEEEEcCCC
Confidence            12357899998666  2555556678899999864

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.87  E-value=2  Score=44.41  Aligned_cols=133  Identities=11%  Similarity=0.119  Sum_probs=85.2

Q ss_pred             CceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEECCeEEEEECCCCee--eeeecCCCCCceEEEEeeCCC---
Q 019672           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLREKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLN---  146 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~---  146 (337)
                      .+.|++.+...+..+.++..+.  .|...+.+...++++.++.+.++.+..++.  ......   +..+.|++..+.   
T Consensus       491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l---~~evscl~i~~~~~~  567 (1158)
T 3ei3_A          491 SASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEM---EHEVACLDITPLGDS  567 (1158)
T ss_dssp             SSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEEC---SSCEEEEECCCCSSS
T ss_pred             cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCC---CCceEEEEeecCCCC
Confidence            4578888887767777776543  688888888888888777888888765532  222222   224666665431   


Q ss_pred             ---ccEEEEcCCCCccEEEEEEccCCccccc------CceEEEEeC--CCCCEEEEEeCCCcEEE-EEEcCCCcee
Q 019672          147 ---ACFLAVPASTTKGSVLVYNVMELHSHCE------APLAAIVLS--SNGMYIATASEQGTIIR-VFLVSEATKS  210 (337)
Q Consensus       147 ---~~~la~~~~~~dg~v~i~d~~~~~~~~~------~~i~~~~~s--~dg~~lat~s~dg~~i~-vwd~~~~~~~  210 (337)
                         ..++|.+-. .|++|+|+++.+.+....      ....++.+.  ....+|..|-.||.+++ .+|..+|+..
T Consensus       568 ~~~s~~~aVg~~-~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          568 NGLSPLCAIGLW-TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS  642 (1158)
T ss_dssp             TTCCSEEEEEET-TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred             cccccEEEEEEC-CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence               356776652 389999999987654432      233444332  23357889999998654 3565666654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.79  E-value=0.87  Score=39.66  Aligned_cols=145  Identities=9%  Similarity=0.029  Sum_probs=79.1

Q ss_pred             CceeEEEEcCCe-EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC---
Q 019672           95 TSILAVRLNKKR-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL---  169 (337)
Q Consensus        95 ~~v~~i~~~~~~-~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~---  169 (337)
                      ..+.++.+.++. ++++. .+.++.-+=..++.-..+.. .....+..+...+++.+++.+.   +|.+.+.+...+   
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~---~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVN---GGKIAFSDPDNSENW  238 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEET---TTEEEEEETTEEEEE
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeC---CceEEEecCCCCCee
Confidence            467778876554 33333 55544432111222122211 1233455666667776666543   577777632111   


Q ss_pred             ccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-cceeEEEEEeecCCCcccEEEEEeC
Q 019672          170 HSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       170 ~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                      ...      ....+.++++.|++..++.+. +|. | .+....|+.-..+..+. .+..++++.|.++++    +++++.
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~----~~~~G~  311 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ----GFILGQ  311 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC-E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE----EEEECS
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCe-E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc----eEEEcC
Confidence            111      113588999999888777654 666 3 45555565444343221 134578899986664    667778


Q ss_pred             CCcEEEEe
Q 019672          243 SGSLHVFS  250 (337)
Q Consensus       243 dg~v~iw~  250 (337)
                      +|+|.-++
T Consensus       312 ~G~i~~~~  319 (327)
T 2xbg_A          312 KGILLRYV  319 (327)
T ss_dssp             TTEEEEEC
T ss_pred             CceEEEEc
Confidence            89776655

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.71  E-value=0.92  Score=39.91  Aligned_cols=107  Identities=11%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             EEEEEcCCc-eEEEeCCCCcEEEEEeeCC-EEEEEEc-c---CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC
Q 019672           21 GFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEML-Y---SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        21 ~la~g~~~g-~~vw~~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      .+++++.+| +.-+|.++|+++...+... ...+... +   ....+.++..     +.|+.|..+|.++|.....+..+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p-----~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP-----FGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC-----STTTEEEEEETTTEEEEEEEEHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE-----CCCCEEEEEECCCCcEEeeeccc
Confidence            455666555 5888888888887765430 1111111 1   1123333431     24899999999988665555433


Q ss_pred             C-----ceeE---EEE-------cCCeEEEEE-CCeEEEEECCCCeeeeeecCC
Q 019672           95 T-----SILA---VRL-------NKKRLVIVL-REKTYIYDANTLAILDTIDTV  132 (337)
Q Consensus        95 ~-----~v~~---i~~-------~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~  132 (337)
                      .     ++..   ..+       ..+.+++.. ++++...|+.+|+.+.++...
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2     2221   001       233333444 889999999999999888653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.62  E-value=0.029  Score=54.82  Aligned_cols=171  Identities=11%  Similarity=0.020  Sum_probs=92.8

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcC--CeEEEEE--CCeEEEEECCC----CeeeeeecC-CCCCceEEEEeeC
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANT----LAILDTIDT-VPNLKGLCAFSPS  144 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~----~~~~~~~~~-~~~~~~~~~~~~~  144 (337)
                      .+.|+..++.+.+....+.....+.++++++  +.++++.  .+.|+.+++..    ......+.. ...+.+   ++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g---lavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG---LAVD  461 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC---EECC
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce---EEEE
Confidence            4577888887766544333334566777764  4455554  56899998865    222222211 112223   3444


Q ss_pred             CCccEEEEcCCCCccEEEEEEccCCccc---cc--CceEEEEeCCCCCEEEEEe-CC-CcEEEEEEcCCCceeEeeccCC
Q 019672          145 LNACFLAVPASTTKGSVLVYNVMELHSH---CE--APLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       145 ~~~~~la~~~~~~dg~v~i~d~~~~~~~---~~--~~i~~~~~s~dg~~lat~s-~d-g~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      +.+..|..+.. ..+.|.++++......   ..  .....|+++|++.+|..+. .. ++ |.++++.. .....+... 
T Consensus       462 ~~~g~LY~tD~-~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG-~~~~~l~~~-  537 (699)
T 1n7d_A          462 WIHSNIYWTDS-VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNG-VDIYSLVTE-  537 (699)
T ss_dssp             CSSSBCEECCT-TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSS-CCCCEESCS-
T ss_pred             eeCCcEEEEec-cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCC-CCeeEEEeC-
Confidence            32333334433 4678999998754321   11  4567899999655444333 22 45 56666643 222222111 


Q ss_pred             cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          218 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       218 ~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .-...+.|+|+|++.  .++++-+..+.|.++++..
T Consensus       538 ~l~~PnGlavd~~~~--~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          538 NIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SCSSCCCEEECTTTC--CEEEEETTTTEEEEECSSS
T ss_pred             CCCCccEEEEeccCC--EEEEEecCCCeEEEEccCC
Confidence            111245789998765  2666666778899999864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.058  Score=47.63  Aligned_cols=139  Identities=16%  Similarity=0.131  Sum_probs=76.1

Q ss_pred             eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEe-eC--CCccEEEEcCCCCccEEEEEEccCCccccc-------
Q 019672          106 RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFS-PS--LNACFLAVPASTTKGSVLVYNVMELHSHCE-------  174 (337)
Q Consensus       106 ~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-------  174 (337)
                      .+++++ |+.|+-+|..+|+.+.++.... ........ +.  .++..++.... .||.|..+|..++.....       
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~-~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPF-GDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCS-TTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEEC-CCCEEEEEECCCCcEEeeeccccce
Confidence            345555 8999999999999988886541 01111111 10  12223333211 378888888776643211       


Q ss_pred             --CceEE---EEe-CC----CCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCccee-----EEEEE---ee--cCCCcc
Q 019672          175 --APLAA---IVL-SS----NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-----IFSLS---FG--QSMQFQ  234 (337)
Q Consensus       175 --~~i~~---~~~-s~----dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~-----i~~l~---fs--~dg~~~  234 (337)
                        .|+..   ..+ .+    .+..+.+|+.+|++ ...|+++|+.+.++..+.....     ..|..   +.  ..+.  
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l-~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~--  166 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM-YTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN--  166 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEE-EEEETTTCCEEEEESTTCBCC--------------------CC--
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEE-EEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC--
Confidence              33321   001 01    34578889999985 6899999999999865431111     01111   10  1123  


Q ss_pred             cEEEEEeCCCcEEEEe
Q 019672          235 DILVATSSSGSLHVFS  250 (337)
Q Consensus       235 ~~las~s~dg~v~iw~  250 (337)
                       .+..+..+..+.+.+
T Consensus       167 -~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          167 -MIVIGKTIFELGIHS  181 (339)
T ss_dssp             -EEEEEEEEEECEECC
T ss_pred             -eEEEecceEEEEEEC
Confidence             677777777777766

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.20  E-value=1.6  Score=38.96  Aligned_cols=155  Identities=9%  Similarity=0.074  Sum_probs=85.1

Q ss_pred             CceEEEEECCCC--CEEEEEEcCC-------ceeEEEEc---C-----CeEEEEE---CCeEEEEECCCCeeeeeecC--
Q 019672           74 PRRLCLFNTTTG--TALRELNFLT-------SILAVRLN---K-----KRLVIVL---REKTYIYDANTLAILDTIDT--  131 (337)
Q Consensus        74 d~~v~iwd~~~~--~~~~~~~~~~-------~v~~i~~~---~-----~~~~v~~---d~~i~i~d~~~~~~~~~~~~--  131 (337)
                      .-+|.+||++++  +.++++.++.       ...++.++   +     +..+-.+   ...|.|||+.+++..+....  
T Consensus       122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~  201 (381)
T 3q6k_A          122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTF  201 (381)
T ss_dssp             CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGG
T ss_pred             CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCC
Confidence            458999999999  9999998753       35667766   1     3443333   46899999998876544421  


Q ss_pred             CCC--------------CceEEEEeeCCC----ccEEEEcCCCCccEEEEEEccC-----Ccc---c----ccC---ceE
Q 019672          132 VPN--------------LKGLCAFSPSLN----ACFLAVPASTTKGSVLVYNVME-----LHS---H----CEA---PLA  178 (337)
Q Consensus       132 ~~~--------------~~~~~~~~~~~~----~~~la~~~~~~dg~v~i~d~~~-----~~~---~----~~~---~i~  178 (337)
                      .++              ..++..++.+|+    +..|.+..- ..  -++|.+.+     ...   +    .++   .-.
T Consensus       202 ~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl-ss--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~  278 (381)
T 3q6k_A          202 KAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG-SA--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI  278 (381)
T ss_dssp             SCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES-SC--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred             ccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC-CC--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence            111              124555555554    445554432 11  23333321     111   0    012   234


Q ss_pred             EEEeC-CCCCEEEEEeCCCcEEEEEEcCC-C---ceeEeeccCCcceeEEEEEeecCCC
Q 019672          179 AIVLS-SNGMYIATASEQGTIIRVFLVSE-A---TKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       179 ~~~~s-~dg~~lat~s~dg~~i~vwd~~~-~---~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      .++++ .+|.++++--+... |..|+..+ .   +.+..+.+...-.-...+++.++|.
T Consensus       279 ~~~~D~~~G~ly~~~~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~  336 (381)
T 3q6k_A          279 ALAYDPKTKVIFFAEANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG  336 (381)
T ss_dssp             EEEECTTTCEEEEEESSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC
T ss_pred             eEEEeCCCCeEEEEeccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe
Confidence            56775 67877777666665 68999875 1   1122222221111255666666665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.00  E-value=2.7  Score=40.37  Aligned_cols=221  Identities=9%  Similarity=-0.057  Sum_probs=127.4

Q ss_pred             EEEEEcCCceEEEeCCCCcEEEEEe---eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-Cc
Q 019672           21 GFALSTKDGFKIFDSSTGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TS   96 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~   96 (337)
                      +|+.+....++..++++.+......   .....-+++.+..+.+..+..      ..++|..+++........+... ..
T Consensus         8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~v~~~g~~~   81 (628)
T 4a0p_A            8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEHVVEFGLDY   81 (628)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSC
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEEEEeCCCCC
Confidence            5555566778888888765332221   123444556555666665554      4788999988755433333222 24


Q ss_pred             eeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc
Q 019672           97 ILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH  172 (337)
Q Consensus        97 v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~  172 (337)
                      ..+++++  .+.++++.  .+.|.+.++........+...  ...-.+++.+|....|..+.....+.|...++......
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~--l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD--LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS--CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC--CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            5566664  45676765  568999998654221112111  11234555565444555443212567887877543321


Q ss_pred             --c--cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEE
Q 019672          173 --C--EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV  248 (337)
Q Consensus       173 --~--~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~i  248 (337)
                        .  -...+.|+++++++.|..+......|...|+..... ..+...  ......|++.. +.   .+.+-...+.|..
T Consensus       160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~---ly~tD~~~~~I~~  232 (628)
T 4a0p_A          160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DY---IYWTDWSRRSIER  232 (628)
T ss_dssp             EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TE---EEEEETTTTEEEE
T ss_pred             EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CE---EEEecCCCCEEEE
Confidence              1  156789999998887777766555578888865433 223221  12245778765 44   6666666788998


Q ss_pred             EecCCCcc
Q 019672          249 FSPGFAIN  256 (337)
Q Consensus       249 w~l~~~~~  256 (337)
                      .|..++++
T Consensus       233 ~dk~tg~~  240 (628)
T 4a0p_A          233 ANKTSGQN  240 (628)
T ss_dssp             EETTTCCS
T ss_pred             EECCCCCc
Confidence            88655543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.60  E-value=1.9  Score=36.70  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=106.4

Q ss_pred             CCCEEEEEcC-----CceEEEeCCCCcEEEEEee----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           18 DNSGFALSTK-----DGFKIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        18 dg~~la~g~~-----~g~~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      ++..++.|+.     +.+.+||+.+.+-......    .....+  .. .+.+.+++|.. ....-+.+.+||..+++..
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~-~~~lyv~GG~~-~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV--YM-AGLVFAVGGFN-GSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EE-TTEEEEESCBC-SSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE--EE-CCEEEEEeCcC-CCccccceEEECCCCCcee
Confidence            4455666653     2357888877642211111    111211  12 44555555421 1112367899999887654


Q ss_pred             EEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCeeeeeecCCCCCc-eEEEEeeCCCccEEEEcCCCC-
Q 019672           89 RELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTIDTVPNLK-GLCAFSPSLNACFLAVPASTT-  157 (337)
Q Consensus        89 ~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~-  157 (337)
                      ..-..+.  .-.++....+.+++.+  +     +.+.+||+.+.+-.. +...+.+. ...+...  ++.+++.+|... 
T Consensus        91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  167 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH-VAPMNTRRSSVGVGVV--GGLLYAVGGYDVA  167 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEECCEETT
T ss_pred             eCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee-cCCCCCcccCceEEEE--CCEEEEEeCCCCC
Confidence            3322222  1122223345555544  2     368899988764322 21111111 1122222  345666666311 


Q ss_pred             ----ccEEEEEEccCCcccc--c-----CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCCceeE--eeccCCcce
Q 019672          158 ----KGSVLVYNVMELHSHC--E-----APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKSY--SFRRGTYPS  220 (337)
Q Consensus       158 ----dg~v~i~d~~~~~~~~--~-----~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~~~~~--~~~~~~~~~  220 (337)
                          ...+.+||+.+.+-..  .     ....++.+  +++.++.|+.++.    .+.+||..+.+-..  .+...  +.
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~  243 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--RR  243 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--CB
T ss_pred             CCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--cc
Confidence                2458889987654211  1     22233333  5677788775431    25789988765321  12111  11


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCC-----cEEEEecCCC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSG-----SLHVFSPGFA  254 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg-----~v~iw~l~~~  254 (337)
                      . .+++. .+++   +++.|+.++     .|.+||+++.
T Consensus       244 ~-~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          244 N-AGVCA-VNGL---LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             S-CEEEE-ETTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             c-CeEEE-ECCE---EEEECCcCCCcccccEEEEcCCCC
Confidence            1 11222 2666   777777653     4888887643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.45  E-value=3.6  Score=39.36  Aligned_cols=221  Identities=8%  Similarity=0.002  Sum_probs=115.5

Q ss_pred             EEEEEcCCceEEEeCCCCc--EEEE-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE-EEEEEcC-C
Q 019672           21 GFALSTKDGFKIFDSSTGR--LCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-LRELNFL-T   95 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~-~~~~~~~-~   95 (337)
                      +|.-+..+.+++.+++...  .... ........+++.+..+.+..+..      ..++|..+++..... ...+... .
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~------~~~~I~r~~~~g~~~~~~v~~~~~~   84 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLL   84 (619)
T ss_dssp             CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC-----CEEEECSSCS
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEEC------CCCeEEEEEccCCCceEEEEeCCCC
Confidence            3444555667788877543  1111 12234444566666666665554      367888888875532 1222222 3


Q ss_pred             ceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeee-cCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           96 SILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        96 ~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ...+++++.  +.++++.  .+.|.+.++........+ .....|.+   ++.+|.+..|..+.....+.|...++....
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~---Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~  161 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA---IALDPSSGFMYWTDWGEVPKIERAGMDGSS  161 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCC---EEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCce---EEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence            567788764  5566665  578999998654322122 11223333   344454334444432124677777765322


Q ss_pred             c--cc---cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          171 S--HC---EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       171 ~--~~---~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      .  +.   -...+.|++++++..|..+......|...|+..... ..+..+.. .....|++..+ .   .+.+-...+.
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~~~~-~~P~gi~~~~~-~---ly~td~~~~~  235 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSL-PHPFALTLFED-I---LYWTDWSTHS  235 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C----------CCCEEESSS-E---EEEECTTTCS
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEeCCC-CCceEEEEeCC-E---EEEecCCCCE
Confidence            1  11   156789999998777766655444467888754332 22322111 11245677655 4   6666667788


Q ss_pred             EEEEecCCCcc
Q 019672          246 LHVFSPGFAIN  256 (337)
Q Consensus       246 v~iw~l~~~~~  256 (337)
                      |...|..+++.
T Consensus       236 V~~~d~~tg~~  246 (619)
T 3s94_A          236 ILACNKYTGEG  246 (619)
T ss_dssp             EEEEESSSCCC
T ss_pred             EEEEECCCCcc
Confidence            99988766543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.18  E-value=2.3  Score=36.14  Aligned_cols=221  Identities=12%  Similarity=0.087  Sum_probs=107.4

Q ss_pred             CCEEEEEcC---CceEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc
Q 019672           19 NSGFALSTK---DGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF   93 (337)
Q Consensus        19 g~~la~g~~---~g~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~   93 (337)
                      +..++.|+.   +.+.+||..+.+-.....  ........... .+.+.+++|..  ...-+.+.++|+.+++....-..
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence            345566664   346888987764221111  00011111122 34455555422  12347899999998865443333


Q ss_pred             CCc--eeEEEEcCCeEEEEE--C------CeEEEEECCCCeeeeeecCCCCC-ceEEEEeeCCCccEEEEcCCCC-----
Q 019672           94 LTS--ILAVRLNKKRLVIVL--R------EKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSLNACFLAVPASTT-----  157 (337)
Q Consensus        94 ~~~--v~~i~~~~~~~~v~~--d------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~-----  157 (337)
                      +.+  -.++....+.+++.+  +      +.+.+||+.+.+-.. +...+.+ ....+...  ++.+++++|...     
T Consensus        89 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           89 PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred             CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence            221  122223355666554  2      368999998764322 2111111 11122222  345666666311     


Q ss_pred             --ccEEEEEEccCCccc--cc-----CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCCcee--EeeccCCcceeE
Q 019672          158 --KGSVLVYNVMELHSH--CE-----APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKS--YSFRRGTYPSTI  222 (337)
Q Consensus       158 --dg~v~i~d~~~~~~~--~~-----~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~~~~--~~~~~~~~~~~i  222 (337)
                        ...+.+||+.+.+-.  ..     ..-.++.+  +++.++.|+.++.    .+.+||..+.+-.  ..+...  ....
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~  241 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GVTV  241 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BSCC
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--ccce
Confidence              345889998765421  11     11223333  6677777764331    1468998876532  111111  1111


Q ss_pred             EEEEeecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019672          223 FSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  254 (337)
Q Consensus       223 ~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~~  254 (337)
                      .++.+  +++   +++.|+.+     ..+.+||+++.
T Consensus       242 ~~~~~--~~~---i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          242 KCAAV--GSI---VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEEE--TTE---EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             eEEEE--CCE---EEEEeCcCCCeeeeeEEEEcCCCC
Confidence            22222  666   78888754     46788887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.98  E-value=2.6  Score=36.04  Aligned_cols=180  Identities=13%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             EEEEcCCceEEEeCCCCcEEEEE-ee--CCEEEEEEccCCCEEEEEeCC-----CCCCCCCceEEEEECCCCCEEEEEEc
Q 019672           22 FALSTKDGFKIFDSSTGRLCYER-AV--GAFSIVEMLYSSSLLAIVGAG-----EQPSLSPRRLCLFNTTTGTALRELNF   93 (337)
Q Consensus        22 la~g~~~g~~vw~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g-----~~~~~~d~~v~iwd~~~~~~~~~~~~   93 (337)
                      ++.|+ +.+.+||..+.+=.... ..  .............++ +++|-     .......+.+..||..+++....-..
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iy-v~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVF-VAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEE-EEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC-CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEE-EEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44555 56789998877632211 10  112233334444444 44441     11011123488899988765332222


Q ss_pred             CCce--eEEEEcCCeEEEEEC----------CeEEEEECCCCeeeeeecCCCCC-ceEEEEeeCCCccEEEEcCCCC---
Q 019672           94 LTSI--LAVRLNKKRLVIVLR----------EKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSLNACFLAVPASTT---  157 (337)
Q Consensus        94 ~~~v--~~i~~~~~~~~v~~d----------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~---  157 (337)
                      +.+-  .++....+.+++.+.          +.+.+||+.+.+-. .+...+.+ ....+...  ++.+++.+|...   
T Consensus        86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  162 (315)
T 4asc_A           86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG-ESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRK  162 (315)
T ss_dssp             SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSC
T ss_pred             CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEe-ECCCCCCcccceeEEEE--CCEEEEEeCCCCCCc
Confidence            2211  122333556655542          35889999876422 22111111 12222222  345666666311   


Q ss_pred             -ccEEEEEEccCCccc--cc-----CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCCc
Q 019672          158 -KGSVLVYNVMELHSH--CE-----APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEAT  208 (337)
Q Consensus       158 -dg~v~i~d~~~~~~~--~~-----~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~~  208 (337)
                       -..+.+||+.+.+-.  ..     ..-.++.+  +++.++.|+.++.    .+.+||..+.+
T Consensus       163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence             246889998765421  11     11223333  6677787776542    25688988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.92  E-value=2.5  Score=44.33  Aligned_cols=222  Identities=12%  Similarity=0.154  Sum_probs=115.5

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ..+|.|-|+..+..+.+-....  -+.-.+|...+++.  ..++.|||+.+.+.+..+....   .++-+.+-.+. .|+
T Consensus        47 ~~~vvIidl~~~~~~~rrpi~A--dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~-~l~  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN-TVA  120 (1630)
T ss_pred             CceEEEEECCCCCCcccccccc--hhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-eeE
Confidence            4589999998766543221111  11123666656655  6799999998887776665432   46666664333 344


Q ss_pred             EcCCCCccEEEEEEccCCccc------c----cCceEEEEeCCCCCEEEEEe-------CCCcEEEEEEcCCCceeEeec
Q 019672          152 VPASTTKGSVLVYNVMELHSH------C----EAPLAAIVLSSNGMYIATAS-------EQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~------~----~~~i~~~~~s~dg~~lat~s-------~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      ...   +..|.-|++......      |    ...|..-..+++.++++..+       -.|. +.+|..+.+.. +.+ 
T Consensus       121 lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~-mQLyS~er~~s-Q~i-  194 (1630)
T 1xi4_A          121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKVS-QPI-  194 (1630)
T ss_pred             EEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce-eeeeecccccc-hhh-
Confidence            332   467999999642211      1    15677888899999887543       2354 57888765432 111 


Q ss_pred             cCCcceeEEEEEe---ecCCCcccEEEEEeC---CCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeee
Q 019672          215 RGTYPSTIFSLSF---GQSMQFQDILVATSS---SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR  288 (337)
Q Consensus       215 ~~~~~~~i~~l~f---s~dg~~~~~las~s~---dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  288 (337)
                      .|| -+.-..+..   .+..+   .++-+..   -+.+||-++.++....++......--.+.|+..      ..++   
T Consensus       195 egh-a~~F~~~~~~~~~~~~~---l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~------~Dfp---  261 (1630)
T 1xi4_A          195 EGH-AASFAQFKMEGNAEEST---LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ------NDFP---  261 (1630)
T ss_pred             hHh-HhhhheeccCCCCCCce---EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccc------cCcc---
Confidence            111 111001111   01111   2222211   168999999765211110000000001111110      0111   


Q ss_pred             eccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          289 NAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       289 ~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      .++..+++-.-++..+.-|.++.|++.+-.+-
T Consensus       262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             eEEEeccccCEEEEEecCceEEEEecccchhh
Confidence            11122444577899999999999999776553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.79  E-value=4  Score=37.41  Aligned_cols=99  Identities=8%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             ceeEEEEcCCe-EEEEE-C-CeEEEEECCCCee--eeeecCC----CCCceEEEEeeCCC---ccEEEEcCCC-------
Q 019672           96 SILAVRLNKKR-LVIVL-R-EKTYIYDANTLAI--LDTIDTV----PNLKGLCAFSPSLN---ACFLAVPAST-------  156 (337)
Q Consensus        96 ~v~~i~~~~~~-~~v~~-d-~~i~i~d~~~~~~--~~~~~~~----~~~~~~~~~~~~~~---~~~la~~~~~-------  156 (337)
                      ...++++.+++ ++++. . +.|++++..+++.  +..+...    ....++..++++|+   +..|.++...       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45678887765 44444 3 3688887654433  2222211    12456777777774   3333322210       


Q ss_pred             C----ccEEEEEEccCC-------cccc-------cCceEEEEeCCCCCEEEEEeC
Q 019672          157 T----KGSVLVYNVMEL-------HSHC-------EAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       157 ~----dg~v~i~d~~~~-------~~~~-------~~~i~~~~~s~dg~~lat~s~  194 (337)
                      .    ...|.-+++...       +.+.       .+....|+|+|||++.++.++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            0    134555554321       1111       145789999999998777553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.28  E-value=3.5  Score=35.17  Aligned_cols=226  Identities=13%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             EEcCCCCEEEEEcC-----CceEEEeCCCCcEEEEEee----CCEEEEEEccCCCEEEEEeCCC---CCCCCCceEEEEE
Q 019672           14 SFNQDNSGFALSTK-----DGFKIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGE---QPSLSPRRLCLFN   81 (337)
Q Consensus        14 ~fs~dg~~la~g~~-----~g~~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~---~~~~~d~~v~iwd   81 (337)
                      +..-++..++.|+.     +.+.+||..+.+-......    .....+  .. .+.+.+++|..   ......+.+.++|
T Consensus        20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VV-GGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EE-TTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE--EE-CCEEEEECCCcCCCCCCeecceEEEEC
Confidence            33446677777763     2357888877642211110    111111  12 34555555420   1111235788999


Q ss_pred             CCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           82 TTTGTALRELNFLT--SILAVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        82 ~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +.+++....-..+.  .-.++....+.+++.+       -+.+.+||+.+.+-...-..+.......+...  ++.++++
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE
Confidence            98876433222221  1112222355565553       24688999987643221111111111222222  3556667


Q ss_pred             cCCCC---ccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCC----cEEEEEEcCCCceeE--eeccC
Q 019672          153 PASTT---KGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQG----TIIRVFLVSEATKSY--SFRRG  216 (337)
Q Consensus       153 ~~~~~---dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg----~~i~vwd~~~~~~~~--~~~~~  216 (337)
                      +|...   ...+.+||+.+.+-..       ...-.++.+  +++.++.|+.++    ..+.+||+.+.+-..  .+...
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~  252 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR  252 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred             eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence            66321   2458889987654211       122233333  667777776542    125789988765321  11111


Q ss_pred             CcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019672          217 TYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF  253 (337)
Q Consensus       217 ~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~  253 (337)
                        ... .+++. -+++   +++.|+.+     ..+.+||+++
T Consensus       253 --r~~-~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          253 --RSA-LGITV-HQGR---IYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             --CBS-CEEEE-ETTE---EEEECCBCSSCBCCEEEEEETTT
T ss_pred             --ccc-eEEEE-ECCE---EEEEcCcCCCcccceEEEEcCCC
Confidence              111 12222 2566   77777644     3577888754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=93.10  E-value=2.5  Score=42.78  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEE-EEcCCCce-------------eEee-c------cCCcceeEEEEEeecCCCc
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRV-FLVSEATK-------------SYSF-R------RGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~v-wd~~~~~~-------------~~~~-~------~~~~~~~i~~l~fs~dg~~  233 (337)
                      .|..-.+.+|+  .++.+-.||.++|+ ++-..+..             +..+ .      .+.....+.+++..++.. 
T Consensus       172 ~p~~l~av~~~--~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (950)
T 4gq2_M          172 KPDLMAAISTS--EICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYN-  248 (950)
T ss_dssp             CEEEEEECSSS--EEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTT-
T ss_pred             CceEEEEEcCC--eEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCc-
Confidence            45555566654  56667778877776 44333321             1000 0      011122477888888888 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCcc
Q 019672          234 QDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       234 ~~~las~s~dg~v~iw~l~~~~~  256 (337)
                        ++.+-+.|+++|||++.++.-
T Consensus       249 --~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          249 --VLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             --EEEEEETTCEEEEEETTTTEE
T ss_pred             --EEEEEECCCEEEEEECCCCCe
Confidence              999999999999999988653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.37  E-value=8  Score=37.03  Aligned_cols=170  Identities=8%  Similarity=-0.028  Sum_probs=99.1

Q ss_pred             CceEEEEECCCCCEEEEEEcC--CceeEEEEcC--CeEEEEE--CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCC
Q 019672           74 PRRLCLFNTTTGTALRELNFL--TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLN  146 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~--~~v~~i~~~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~  146 (337)
                      .+.|+.-|+.+......+...  ..+.+|++++  +.++++.  .+.|+.+++........+... ..+.+ +++.+  .
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G-lAvD~--~   90 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG-MAVDW--L   90 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE-EEEET--T
T ss_pred             CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce-EEEEe--C
Confidence            368888898876544444333  3677888875  5566665  678999988654333333322 22333 34443  3


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcc--cc-c--CceEEEEeCCCCCEEEEEe-C-CCcEEEEEEcCCCceeEeeccCCcc
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHS--HC-E--APLAAIVLSSNGMYIATAS-E-QGTIIRVFLVSEATKSYSFRRGTYP  219 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~--~~-~--~~i~~~~~s~dg~~lat~s-~-dg~~i~vwd~~~~~~~~~~~~~~~~  219 (337)
                      +..|..+.. ..+.|.+.++.....  +. .  .....|+++|...+|.-+. . .+. |...++..... ..+-.+  -
T Consensus        91 ~~~LY~tD~-~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG~~~-~~l~~~--~  165 (628)
T 4a0p_A           91 GKNLYWADT-GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDGSER-TTLVPN--V  165 (628)
T ss_dssp             TTEEEEEET-TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSC-EEEECS--C
T ss_pred             CCEEEEEEC-CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCCCce-EEEECC--C
Confidence            333433333 468899999864322  11 1  5578999998544444433 2 344 56677654332 222222  2


Q ss_pred             eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          220 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       220 ~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      .....|+++++++  .++.+-+..+.|..++++.
T Consensus       166 ~~P~GlalD~~~~--~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          166 GRANGLTIDYAKR--RLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             SSEEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             CCcceEEEccccC--EEEEEECCCCEEEEEcCCC
Confidence            2367899999766  1455556667899999865

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.24  E-value=2.6  Score=34.61  Aligned_cols=142  Identities=13%  Similarity=0.058  Sum_probs=79.3

Q ss_pred             ceeEEEEcCCeEEEE-ECCeEEEEECCCCeee------eeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC
Q 019672           96 SILAVRLNKKRLVIV-LREKTYIYDANTLAIL------DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (337)
Q Consensus        96 ~v~~i~~~~~~~~v~-~d~~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~  168 (337)
                      .+.+++|+|+..+-+ .++.++-.+..+.+..      ..+-.. .-..--++.+++++.+.++ .   ||.|.-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~F~a~~fD~~G~LYav-~---dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQFQFLFFDPNGYLYAV-S---KDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECS-CGGGCSEEEECTTSCEEEE-E---TTEEEEESCCC
T ss_pred             cceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEeccc-ccccceEEEECCCCCEEEe-C---CCEEEEeCCCc
Confidence            677899998765443 5777666665442111      111000 0011146677788888777 3   68887776533


Q ss_pred             Ccc---------ccc---CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc------eeEeec-cCCcceeEEEEEeec
Q 019672          169 LHS---------HCE---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------KSYSFR-RGTYPSTIFSLSFGQ  229 (337)
Q Consensus       169 ~~~---------~~~---~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~------~~~~~~-~~~~~~~i~~l~fs~  229 (337)
                      ...         +..   ..+..|.|.|+|.+-|..  ||.+.| +.-.++.      ....+. .+-+  .-.-+.|+|
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr-~~~P~~~~~~wl~~~~~~g~~g~~--~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK-ALPPVSNQDNWLARATKIGQGGWD--TFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE-ECCCSSTTCCHHHHCEEEESSSGG--GEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe-cCCCCCCCcccccccceeccCCcc--eEEEEEECC
Confidence            211         111   578999999999987776  776322 2222111      011111 1212  234467999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      +|.   +.++.  +|  +||....+
T Consensus       192 ~G~---l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          192 VGT---LFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             TSC---EEEEE--TT--EEEEESCC
T ss_pred             CCc---EEEEe--CC--eEEecCCc
Confidence            998   66655  66  66765444

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.14  E-value=11  Score=36.46  Aligned_cols=190  Identities=8%  Similarity=0.028  Sum_probs=92.6

Q ss_pred             CCCCEEEEEcCC-----ceEEEeCCCCcEEEEE-e-------eCCEEEEEEccC-CCEEEEEeCCCCCCCCCceEEEEEC
Q 019672           17 QDNSGFALSTKD-----GFKIFDSSTGRLCYER-A-------VGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus        17 ~dg~~la~g~~~-----g~~vw~~~~~~~~~~~-~-------~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      -++..++.|+.+     .+.+||..+++-.... .       ..-..+...... .+.+.++||...+...-+.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777642     3567887766422111 1       011112222232 4445555543221112356899999


Q ss_pred             CCCCEEEEEEcCC---ceeEEEEcCCeEEEEE----CCeEEEEECCCCeeeeeecC----CCCCceEEEEeeCCC-ccEE
Q 019672           83 TTGTALRELNFLT---SILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDT----VPNLKGLCAFSPSLN-ACFL  150 (337)
Q Consensus        83 ~~~~~~~~~~~~~---~v~~i~~~~~~~~v~~----d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l  150 (337)
                      .+++....-..+.   ....+.+..+.+++.+    .+.+.+||+.+.+-. .+..    +....+..++..+.+ +.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8876443222221   1223333355666654    127999999876422 1111    111112222332333 5677


Q ss_pred             EEcCCCCc-----cEEEEEEccCCcc--------c----cc--CceEEEEeCCCCCEEEEEeCC--------CcEEEEEE
Q 019672          151 AVPASTTK-----GSVLVYNVMELHS--------H----CE--APLAAIVLSSNGMYIATASEQ--------GTIIRVFL  203 (337)
Q Consensus       151 a~~~~~~d-----g~v~i~d~~~~~~--------~----~~--~~i~~~~~s~dg~~lat~s~d--------g~~i~vwd  203 (337)
                      +++|...+     ..+.+||+.+..-        +    ..  ....++.+ .+++.++.|+.+        .. +.+||
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~-v~~yd  632 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRTNS-IISLD  632 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTTTS-EEEEE
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCCCe-EEEEE
Confidence            77774222     4688999877651        0    01  11222332 336777777743        23 56889


Q ss_pred             cCCCce
Q 019672          204 VSEATK  209 (337)
Q Consensus       204 ~~~~~~  209 (337)
                      ..+.+-
T Consensus       633 ~~t~~W  638 (695)
T 2zwa_A          633 PLSETL  638 (695)
T ss_dssp             TTTTEE
T ss_pred             CCCCeE
Confidence            887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.91  E-value=7.9  Score=34.04  Aligned_cols=98  Identities=13%  Similarity=0.047  Sum_probs=54.5

Q ss_pred             CceeEEEEcCCe-EEEEE--CCeEEEEECCCCee--eeeec--CCCCCceEEEEeeCCC---ccEE--EEcCCCCccEEE
Q 019672           95 TSILAVRLNKKR-LVIVL--REKTYIYDANTLAI--LDTID--TVPNLKGLCAFSPSLN---ACFL--AVPASTTKGSVL  162 (337)
Q Consensus        95 ~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~---~~~l--a~~~~~~dg~v~  162 (337)
                      .....|++.+++ +++..  .++|++++..+++.  +..+.  ......+...++.+|+   +..|  .++.. .++.|.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEEE
Confidence            356788888765 44444  57898888655543  22121  0123456777788774   2223  22322 245566


Q ss_pred             EEEccCCc-----c-----cc-------cCceEEEEeCCCCCEEEEEe
Q 019672          163 VYNVMELH-----S-----HC-------EAPLAAIVLSSNGMYIATAS  193 (337)
Q Consensus       163 i~d~~~~~-----~-----~~-------~~~i~~~~~s~dg~~lat~s  193 (337)
                      -|.+....     .     +.       .+.-..|+|.|||.+.++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            66654411     0     00       03456699999999877754

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.55  E-value=9  Score=34.13  Aligned_cols=133  Identities=13%  Similarity=0.178  Sum_probs=80.3

Q ss_pred             eEEEEECCCC--eeeeeecCCCC----CceEEEEeeC---CC----ccEEEEcCCCCccEEEEEEccCCcc---cc----
Q 019672          114 KTYIYDANTL--AILDTIDTVPN----LKGLCAFSPS---LN----ACFLAVPASTTKGSVLVYNVMELHS---HC----  173 (337)
Q Consensus       114 ~i~i~d~~~~--~~~~~~~~~~~----~~~~~~~~~~---~~----~~~la~~~~~~dg~v~i~d~~~~~~---~~----  173 (337)
                      +|.+||+.+.  ++++.+..+.+    ...+..+..+   ++    +.+...+.. ..+-|.|+|+.+++.   .|    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~-~~~gLIVydl~~~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF-LRGALFIYDHKKQDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET-TTTEEEEEETTTTEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC-CCCcEEEEECCCCcEEEEccCCCc
Confidence            5778888888  88877754321    1233333333   21    334334433 367799999987642   11    


Q ss_pred             ----------------cCceEEEEeCCC----CCEEEEEeCCCcEEEEEEcCC-----Cc---eeEeec-cCCcceeEEE
Q 019672          174 ----------------EAPLAAIVLSSN----GMYIATASEQGTIIRVFLVSE-----AT---KSYSFR-RGTYPSTIFS  224 (337)
Q Consensus       174 ----------------~~~i~~~~~s~d----g~~lat~s~dg~~i~vwd~~~-----~~---~~~~~~-~~~~~~~i~~  224 (337)
                                      ...|..+++||+    ++.|.-..-.+.  ++|.+.+     ..   .++.+. ++. ...-..
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~-~s~~~~  279 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGK-YNDAIA  279 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCT-TCCEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCC-CCCcce
Confidence                            047889999998    788887777664  4665532     21   122221 110 122345


Q ss_pred             EEee-cCCCcccEEEEEeCCCcEEEEecCC
Q 019672          225 LSFG-QSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       225 l~fs-~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +++. .+|.   ++++--..+.|..|+..+
T Consensus       280 ~~~D~~~G~---ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          280 LAYDPKTKV---IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEECTTTCE---EEEEESSSSEEEEEETTS
T ss_pred             EEEeCCCCe---EEEEeccCCeEEEEeCCC
Confidence            6775 6787   788888889999999875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=90.36  E-value=1.5  Score=36.01  Aligned_cols=95  Identities=11%  Similarity=0.014  Sum_probs=55.0

Q ss_pred             EEeeCCCccEEEEcCCCCccEEEEEEccCCccc----ccCce--------EEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEAPL--------AAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       140 ~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----~~~~i--------~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      .++++|++.+.++ .   +|.+.-.+..+....    ....|        .++.|+|+|.+.++  .||.+. -++-.+.
T Consensus        45 ~laf~P~G~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy-r~~pP~~  117 (236)
T 1tl2_A           45 FLFLSPGGELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY-KASPPQS  117 (236)
T ss_dssp             EEEECTTSCEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE-EESCCCS
T ss_pred             eEEECCCccEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEE-EeCCCcC
Confidence            5666777777776 3   576666665432111    01223        78999999998887  558754 4554322


Q ss_pred             ceeEeeccCC-----cceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          208 TKSYSFRRGT-----YPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       208 ~~~~~~~~~~-----~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      ..-.-+..+.     .-..+..|.|.|+|.   +.|+.  |+.+
T Consensus       118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~---Lyav~--dg~l  156 (236)
T 1tl2_A          118 DTDNWIARATEVGSGGWSGFKFLFFHPNGY---LYAVH--GQQF  156 (236)
T ss_dssp             TTCCHHHHSEEEECSSGGGEEEEEECTTSC---EEEEE--TTEE
T ss_pred             CCCceeccccEeccCCCCceEEEEECCCce---EEEEe--CCcE
Confidence            1111010000     013478999999998   66666  7774

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=88.76  E-value=11  Score=32.39  Aligned_cols=101  Identities=12%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             CCCccEEEEcCCCC------------ccEEEEEEccCCcccccCceEEEEeCCCCCEEEEEe---CCCcEEEEEEcCCCc
Q 019672          144 SLNACFLAVPASTT------------KGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEAT  208 (337)
Q Consensus       144 ~~~~~~la~~~~~~------------dg~v~i~d~~~~~~~~~~~i~~~~~s~dg~~lat~s---~dg~~i~vwd~~~~~  208 (337)
                      ++++.+|.++....            ...|+..++.......-..-.+..|+|+|++|+-..   .+...|..-++.. .
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s  139 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-E  139 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTS-C
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCC-C
Confidence            34556777665311            346777777665432211122336788999998776   2333355556653 3


Q ss_pred             eeEeeccCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEEecCCC
Q 019672          209 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFA  254 (337)
Q Consensus       209 ~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l~~~  254 (337)
                      ...++..+.    +  .+|+|+++   .|.-.+. ...|.+-++...
T Consensus       140 ~~~~lt~~~----~--~~~~~~g~---~iy~t~~g~~~Iy~~~l~g~  177 (302)
T 3s25_A          140 EKKKIKNHY----L--FTCNTSDR---YFYYNNPKNGQLYRYDTASQ  177 (302)
T ss_dssp             CCEEEESSC----C--CCSEEETT---EEEEECTTTCCEEEEETTTT
T ss_pred             CeEEEeCCC----c--eEeeEECC---EEEEEeCCCceEEEEECCCC
Confidence            333443321    1  46789998   6665555 566777777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.74  E-value=10  Score=32.06  Aligned_cols=180  Identities=11%  Similarity=0.075  Sum_probs=91.2

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C----CeEEEEECCCCeeeeeec
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R----EKTYIYDANTLAILDTID  130 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d----~~i~i~d~~~~~~~~~~~  130 (337)
                      +.+.+++|..    ..+.+.+||..+++....-..+.  .-.++....+.+++.+  +    +.+.+||+.+.+-...-.
T Consensus        12 ~~l~~~GG~~----~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGS----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCS----STTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCC----CCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            5566666642    25789999999886543222221  1122223355565554  2    578999998764322211


Q ss_pred             CCCCCceEEEEeeCCCccEEEEcCCC----CccEEEEEEccCCcccc--c-----CceEEEEeCCCCCEEEEEeCC----
Q 019672          131 TVPNLKGLCAFSPSLNACFLAVPAST----TKGSVLVYNVMELHSHC--E-----APLAAIVLSSNGMYIATASEQ----  195 (337)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~----~dg~v~i~d~~~~~~~~--~-----~~i~~~~~s~dg~~lat~s~d----  195 (337)
                      .+.......+...  ++.+++++|..    ....+.+||+.+.+-..  .     ..-.++.+  +++.++.|+.+    
T Consensus        88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred             CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence            1111112222222  34566777641    12458899987654211  1     11222332  66777776532    


Q ss_pred             -----CcEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019672          196 -----GTIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  254 (337)
Q Consensus       196 -----g~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~~  254 (337)
                           .. +.+||..+.+-.  ..+...  ... .+++. -+++   +++.|+.+     ..+.+||+.+.
T Consensus       164 ~~~~~~~-~~~yd~~~~~W~~~~~~p~~--r~~-~~~~~-~~~~---i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          164 SGRVLNS-CEVYDPATETWTELCPMIEA--RKN-HGLVF-VKDK---IFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TCEECCC-EEEEETTTTEEEEECCCSSC--CBS-CEEEE-ETTE---EEEECCEETTEEBCCEEEEETTTT
T ss_pred             cccccce-EEEeCCCCCeEEECCCccch--hhc-ceEEE-ECCE---EEEEeCCCCCCCCceEEEeeCCCC
Confidence                 22 468998877532  111111  111 11222 2666   77777654     35888887654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.68  E-value=15  Score=31.77  Aligned_cols=134  Identities=13%  Similarity=0.004  Sum_probs=64.5

Q ss_pred             ceEEEEECCCCCEEEEEEcCC--ce-eEEEEcCCeEEEEE--------CCeEEEEEC--CCCeeeeeecCCCCCc---eE
Q 019672           75 RRLCLFNTTTGTALRELNFLT--SI-LAVRLNKKRLVIVL--------REKTYIYDA--NTLAILDTIDTVPNLK---GL  138 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~--~v-~~i~~~~~~~~v~~--------d~~i~i~d~--~~~~~~~~~~~~~~~~---~~  138 (337)
                      +.+.++|+.+++....-..+.  .- .++....+.+++.+        ...+.+||+  .+.+- ..+...+.+.   ..
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccc
Confidence            689999999886554433332  12 34444456666653        235777887  43321 1221111111   22


Q ss_pred             EEEeeCCCccEEEEcCCCCc--------------------cEEEEEEccCCccc-----cc--CceEEEEeCCCCCEEEE
Q 019672          139 CAFSPSLNACFLAVPASTTK--------------------GSVLVYNVMELHSH-----CE--APLAAIVLSSNGMYIAT  191 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~d--------------------g~v~i~d~~~~~~~-----~~--~~i~~~~~s~dg~~lat  191 (337)
                      .+...  ++.+++++|...+                    ..+.+||+.+.+-.     ..  ..-.++.  .+++.++.
T Consensus       247 ~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~  322 (357)
T 2uvk_A          247 FAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLII  322 (357)
T ss_dssp             EEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEE
T ss_pred             eEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEE
Confidence            22222  3456667763111                    25788998765321     11  1122233  36778888


Q ss_pred             EeCCCc-----EEEEEEcCCCceeEee
Q 019672          192 ASEQGT-----IIRVFLVSEATKSYSF  213 (337)
Q Consensus       192 ~s~dg~-----~i~vwd~~~~~~~~~~  213 (337)
                      |+.++.     -+.++++++++.+...
T Consensus       323 GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          323 GGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            885531     1335588877765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=86.09  E-value=15  Score=31.13  Aligned_cols=170  Identities=18%  Similarity=0.042  Sum_probs=84.1

Q ss_pred             CceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE-----------CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL-----------REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      -+.+.++|..+++....-..+.  .-.++....+.+++.+           .+.+.+||+.+.+-...-..+.......+
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             cceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            4679999998876543222221  1112233355555543           13588999877642221111111111122


Q ss_pred             EeeCCCccEEEEcCCCC---ccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCC
Q 019672          141 FSPSLNACFLAVPASTT---KGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSE  206 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~---dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~  206 (337)
                      ...  ++.+++.+|...   ...+.+||+.+.+-..       ...-.++.+  +++.++.|+.++.    .+.+||..+
T Consensus       118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence            222  345666666311   1458889987654211       122223333  6677777765432    146889877


Q ss_pred             CceeE--eeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019672          207 ATKSY--SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  254 (337)
Q Consensus       207 ~~~~~--~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~~  254 (337)
                      .+-..  .+...  ...-.++.+  +++   +++.|+.+     ..+.+||+.+.
T Consensus       194 ~~W~~~~~~p~~--r~~~~~~~~--~~~---iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          194 NEWRMITAMNTI--RSGAGVCVL--HNC---IYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             TEEEECCCCSSC--CBSCEEEEE--TTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CeEeeCCCCCCc--cccceEEEE--CCE---EEEEeCCCCCCccceEEEEeCCCC
Confidence            65321  11111  111112222  666   77777654     45888887653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.39  E-value=18  Score=31.56  Aligned_cols=98  Identities=11%  Similarity=0.052  Sum_probs=50.1

Q ss_pred             ceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecC-----CCCCceEEEEeeCCC---ccEEEEcCCC--C----c
Q 019672           96 SILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDT-----VPNLKGLCAFSPSLN---ACFLAVPAST--T----K  158 (337)
Q Consensus        96 ~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~la~~~~~--~----d  158 (337)
                      ....|.+.+++  ++++. .+.|++++. +++....+..     .....+...++.+|+   +..|.+....  .    .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45678887764  45554 778988885 3332211111     112235667777774   3333332210  0    2


Q ss_pred             cEEEEEEccCC-------ccc----c-----cCceEEEEeCCCCCEEEEEeC
Q 019672          159 GSVLVYNVMEL-------HSH----C-----EAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       159 g~v~i~d~~~~-------~~~----~-----~~~i~~~~~s~dg~~lat~s~  194 (337)
                      ..|..|++...       +.+    .     .+.-..++|+|||.+.++-++
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            34555655322       000    0     022467999999976666543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.33  E-value=3.8  Score=38.52  Aligned_cols=87  Identities=11%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             EEEEECCC----C-eeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc------------c-c--
Q 019672          115 TYIYDANT----L-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------------C-E--  174 (337)
Q Consensus       115 i~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------------~-~--  174 (337)
                      +.+.|.+.    + ..+..+..+.+|.++   ..+||+.+++.+|. .+.+|.++|+......            . +  
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv---~vsPDGkyi~v~GK-LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e  375 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGC---NTSSDGKYFIAAGK-LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE  375 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCE---EECTTSCEEEEECT-TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcce---eeCCCCCEEEEcCC-CCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence            55555544    1 233344444445454   55788999999987 6899999999853221            0 1  


Q ss_pred             --CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          175 --APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       175 --~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                        ......+|+++|.-..|---|..+ --|++..
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqv-vkWni~~  408 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQV-VKWNMEE  408 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEE-EEEEHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceE-EEEeccH
Confidence              445788999999544444477765 5799864

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=85.14  E-value=16  Score=30.65  Aligned_cols=170  Identities=8%  Similarity=-0.038  Sum_probs=85.4

Q ss_pred             CceEEEEECCCCCEEEEEEcCC--ceeEEEEcCCeEEEEE--C-----CeEEEEECCCCee--eeeecCCCCC-ceEEEE
Q 019672           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAI--LDTIDTVPNL-KGLCAF  141 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~v~~--d-----~~i~i~d~~~~~~--~~~~~~~~~~-~~~~~~  141 (337)
                      -+.+.++|+.+++....-..+.  .-.++....+.+++.+  +     +.+.+||+.+.+.  -..+...+.+ ....+.
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            4678999998876433222222  1122333445666554  1     4689999877640  1112111111 112222


Q ss_pred             eeCCCccEEEEcCCCC---ccEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeCCCc----EEEEEEcCCC
Q 019672          142 SPSLNACFLAVPASTT---KGSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASEQGT----IIRVFLVSEA  207 (337)
Q Consensus       142 ~~~~~~~~la~~~~~~---dg~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~dg~----~i~vwd~~~~  207 (337)
                      ..  ++.+++.+|...   ...+.+||+.+.+-..     .  ..-.++.+  +++.++.|+.++.    .+.+||..+.
T Consensus       110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            22  355666666321   2468899987654211     1  12222333  6777777765431    2468998876


Q ss_pred             ceeE--eeccCCcceeEEEEEeecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019672          208 TKSY--SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  254 (337)
Q Consensus       208 ~~~~--~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-----g~v~iw~l~~~  254 (337)
                      +-..  .+...  ... .+++. -+++   +++.|+.+     ..+.+||+++.
T Consensus       186 ~W~~~~~~p~~--r~~-~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          186 HWTNVTPMATK--RSG-AGVAL-LNDH---IYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEEEECCCSSC--CBS-CEEEE-ETTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cEEeCCCCCcc--ccc-ceEEE-ECCE---EEEEeCCCCCcccceEEEEeCCCC
Confidence            5322  11111  111 11222 2566   77777764     46888988654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=84.96  E-value=15  Score=33.53  Aligned_cols=96  Identities=11%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-------------ccCceEEEEeCCC----CCEEEEEeC-------
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-------------CEAPLAAIVLSSN----GMYIATASE-------  194 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------------~~~~i~~~~~s~d----g~~lat~s~-------  194 (337)
                      .++.+.|++.++++..  ..+.|.+++..++...             .+..+..|+|+||    +.+.++-+.       
T Consensus        30 ~~~a~~pdG~l~V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           30 HALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             EEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             eEEEEcCCCcEEEEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4566667777776653  2346777765433211             1244669999994    544444432       


Q ss_pred             -----CCcEEEEEEcCCC-------ceeE-eeccCCcceeEEEEEeecCCCcccEEEEEe
Q 019672          195 -----QGTIIRVFLVSEA-------TKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATS  241 (337)
Q Consensus       195 -----dg~~i~vwd~~~~-------~~~~-~~~~~~~~~~i~~l~fs~dg~~~~~las~s  241 (337)
                           ... |.-|+...+       +.+. .+... ..+....|+|.|||.   ++++.+
T Consensus       108 ~~~~~~~~-v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~---Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTI-IRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQK---IYYTIG  162 (454)
T ss_dssp             CCSCEEEE-EEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSC---EEEEEC
T ss_pred             cccccccE-EEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCe---EEEEEC
Confidence                 123 334444322       1122 12211 112367899999999   555544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=84.43  E-value=20  Score=31.25  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCCceEEEe
Q 019672            9 PVFFVSFNQDNSGFALSTKDGFKIFD   34 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g~~vw~   34 (337)
                      .-+.++|.|||+++++-....+.+++
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~   57 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR   57 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE
Confidence            34689999999977766555567777

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.58  E-value=19  Score=30.43  Aligned_cols=167  Identities=10%  Similarity=0.117  Sum_probs=83.1

Q ss_pred             ceEEEEECCCCCEEEEEEcCC----ceeEEEEcCCeEEEEEC-------------CeEEEEECCCCeeeeeecCCCCCce
Q 019672           75 RRLCLFNTTTGTALRELNFLT----SILAVRLNKKRLVIVLR-------------EKTYIYDANTLAILDTIDTVPNLKG  137 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~~~~~~----~v~~i~~~~~~~~v~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~~  137 (337)
                      +.+.+||..+++-.. ...+.    .-.++....+.+++.+.             +.+.+||..+.+-. .+...+.+..
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~   90 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRC   90 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEE
T ss_pred             CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchh
Confidence            479999999887654 33322    12233334455554331             13788998876432 2221122211


Q ss_pred             EEEEeeCCCccEEEEcCC------CCccEEEEEEccCCcccc-----c--CceEEEEeCCCCCEEEEEeC-C-----CcE
Q 019672          138 LCAFSPSLNACFLAVPAS------TTKGSVLVYNVMELHSHC-----E--APLAAIVLSSNGMYIATASE-Q-----GTI  198 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~------~~dg~v~i~d~~~~~~~~-----~--~~i~~~~~s~dg~~lat~s~-d-----g~~  198 (337)
                      -.+.... ++.+++.+|.      .....+.+||+.+.+-..     .  ..-.++.  .+++.++.|+. +     .. 
T Consensus        91 ~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~-  166 (315)
T 4asc_A           91 LFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNK-  166 (315)
T ss_dssp             SCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCC-
T ss_pred             ceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccce-
Confidence            1122222 3456666662      112568899987654211     1  1122222  36677777765 2     23 


Q ss_pred             EEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeCCC-----cEEEEecCCC
Q 019672          199 IRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-----SLHVFSPGFA  254 (337)
Q Consensus       199 i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg-----~v~iw~l~~~  254 (337)
                      +.+||..+.+-.  ..+...  +.. .+++. -+++   +++.|+.++     .+.+||+.+.
T Consensus       167 ~~~yd~~~~~W~~~~~~p~~--r~~-~~~~~-~~~~---iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPMQTA--RSL-FGATV-HDGR---IIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSC--CBS-CEEEE-ETTE---EEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEEEeCCCCeEEECCCCCCc--hhc-eEEEE-ECCE---EEEEeccCCCCccceEEEEECCCC
Confidence            468898876432  111111  111 11222 2666   777777654     4788887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.33  E-value=34  Score=33.05  Aligned_cols=175  Identities=11%  Similarity=0.072  Sum_probs=91.1

Q ss_pred             CceEEEEECCCCCEEEEE-E-----cCC---ceeEEEEc-CCeEEEEE--C------CeEEEEECCCCeeeeeecCCCCC
Q 019672           74 PRRLCLFNTTTGTALREL-N-----FLT---SILAVRLN-KKRLVIVL--R------EKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~-~-----~~~---~v~~i~~~-~~~~~v~~--d------~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      -+.+.++|..+++....- .     .+.   ....+.+. .+.+++.+  +      +.+.+||+.+.+-.. +...+.+
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~-~~~~p~~  489 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM-IKSLSHT  489 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEE-CCCCSBC
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEE-CCCCCCC
Confidence            467899999988755433 2     121   12334443 56666654  1      358899988753221 1111111


Q ss_pred             -ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----------ccCceEEEEeCCC-CCEEEEEeC--CC----c
Q 019672          136 -KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----------CEAPLAAIVLSSN-GMYIATASE--QG----T  197 (337)
Q Consensus       136 -~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----------~~~~i~~~~~s~d-g~~lat~s~--dg----~  197 (337)
                       ....+... .++.+++++|....+.+.+||..+..-.          ....-.+++++.+ ++.++.|+.  +|    .
T Consensus       490 R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~  568 (695)
T 2zwa_A          490 RFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD  568 (695)
T ss_dssp             CBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCC
T ss_pred             cccceEEEE-cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeC
Confidence             11222221 2566778887533337899998765311          0122334555655 677777765  22    2


Q ss_pred             EEEEEEcCCCce-----eEeeccC--CcceeEEEEEeecCCCcccEEEEEeC--------CCcEEEEecCCC
Q 019672          198 IIRVFLVSEATK-----SYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSS--------SGSLHVFSPGFA  254 (337)
Q Consensus       198 ~i~vwd~~~~~~-----~~~~~~~--~~~~~i~~l~fs~dg~~~~~las~s~--------dg~v~iw~l~~~  254 (337)
                      -+.+||+.+.+-     -..+...  ..+.. .+++...+++   +++.|+.        ...|.+||+.+.
T Consensus       569 ~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~---iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          569 KAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRK---LLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTE---EEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             cEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCE---EEEECCccCCCCCCCCCeEEEEECCCC
Confidence            257899887761     1111110  00111 1223334466   7777774        345888988654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.12  E-value=4.1  Score=41.17  Aligned_cols=38  Identities=11%  Similarity=0.071  Sum_probs=33.0

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      ..+.+++..++..++.|-+.|++ +|||++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeee
Confidence            45788888888899999999998 699999999988764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=82.07  E-value=25  Score=30.67  Aligned_cols=173  Identities=13%  Similarity=0.074  Sum_probs=86.5

Q ss_pred             CceEEEEECCCCC-EEEEEE----cCCceeEEEEcCC-----eEEEEE-C--------CeEEEEECCCC-------eee-
Q 019672           74 PRRLCLFNTTTGT-ALRELN----FLTSILAVRLNKK-----RLVIVL-R--------EKTYIYDANTL-------AIL-  126 (337)
Q Consensus        74 d~~v~iwd~~~~~-~~~~~~----~~~~v~~i~~~~~-----~~~v~~-d--------~~i~i~d~~~~-------~~~-  126 (337)
                      +++|.++| ..++ .+..+.    .......|+++++     .++++. .        +.|..|+....       +.+ 
T Consensus        48 ~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~  126 (354)
T 3a9g_A           48 PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLI  126 (354)
T ss_dssp             TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEE
T ss_pred             CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEE
Confidence            57888887 3444 222221    1235788999986     566654 2        56777776543       111 


Q ss_pred             eeecCCCCCceEEEEeeCCCccEEEEcCCC-----------CccEEEEEEccCCc---------cccc---CceEEEEeC
Q 019672          127 DTIDTVPNLKGLCAFSPSLNACFLAVPAST-----------TKGSVLVYNVMELH---------SHCE---APLAAIVLS  183 (337)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----------~dg~v~i~d~~~~~---------~~~~---~~i~~~~~s  183 (337)
                      ..+.... ......+.+.|++.+.++.+..           ..|.|.-+|....-         .+..   .....++|+
T Consensus       127 ~~~~~~~-~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d  205 (354)
T 3a9g_A          127 DGIPGAY-IHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWH  205 (354)
T ss_dssp             EEEECCS-SCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEEC
T ss_pred             EcCCCCC-CcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEe
Confidence            1122111 1111234556677666665421           12556666654210         0100   335689999


Q ss_pred             C-CCCEEEEEeCCCcEEEEEEcCCCc------------------eeEeeccCCcceeEEEEEee-------cCCCcccEE
Q 019672          184 S-NGMYIATASEQGTIIRVFLVSEAT------------------KSYSFRRGTYPSTIFSLSFG-------QSMQFQDIL  237 (337)
Q Consensus       184 ~-dg~~lat~s~dg~~i~vwd~~~~~------------------~~~~~~~~~~~~~i~~l~fs-------~dg~~~~~l  237 (337)
                      | +|++.++-......=.|.-+..|.                  .+..+.  ........++|.       .+|.   ++
T Consensus       206 ~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~ap~G~~~y~g~~fp~~~G~---l~  280 (354)
T 3a9g_A          206 RASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWAPSGASFVHGDMFPGLRGW---LL  280 (354)
T ss_dssp             TTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCCEEEEEECCSSSCGGGTTE---EE
T ss_pred             CCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcCCcceEEECCCCCcccCCc---EE
Confidence            9 677666533221101122223322                  111221  111236778884       5676   66


Q ss_pred             EEEeCCCcEEEEecCC
Q 019672          238 VATSSSGSLHVFSPGF  253 (337)
Q Consensus       238 as~s~dg~v~iw~l~~  253 (337)
                      ++.-..+.|...+++.
T Consensus       281 v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          281 IACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EEETTTTEEEEEEECG
T ss_pred             EEEcCCCEEEEEEECC
Confidence            6666667788888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=82.01  E-value=36  Score=32.39  Aligned_cols=139  Identities=8%  Similarity=-0.052  Sum_probs=74.8

Q ss_pred             EEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--c-cc--CceEEEE
Q 019672          107 LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--H-CE--APLAAIV  181 (337)
Q Consensus       107 ~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~-~~--~~i~~~~  181 (337)
                      ++++..+.|+..++.............+.....++.+++.+..|..+.. ..+.|..+++.....  + ..  .....++
T Consensus       320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~-~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA  398 (619)
T 3s94_A          320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTAQIAHPDGIA  398 (619)
T ss_dssp             EEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC-CCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence            3344456666666654422111111112234567777765555555543 467888888865322  1 11  4677899


Q ss_pred             eCCCCC-EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecC-CCcccEEEEEe-CCCcEEEEecC
Q 019672          182 LSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS-MQFQDILVATS-SSGSLHVFSPG  252 (337)
Q Consensus       182 ~s~dg~-~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~d-g~~~~~las~s-~dg~v~iw~l~  252 (337)
                      +++.+. +..+-+..++ |.+.++.... ...+... .-.....|++.|. |.   ++.+-. ....|...+++
T Consensus       399 vD~~~~~lY~tD~~~~~-I~v~~~~G~~-~~~l~~~-~l~~P~~iavdp~~G~---ly~tD~g~~~~I~r~~~d  466 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDR-IEVTRLNGTM-RKILISE-DLEEPRAIVLDPMVGY---MYWTDWGEIPKIERAALD  466 (619)
T ss_dssp             EETTTTEEEEEETTTTE-EEEEETTSCS-CEEEECT-TCCSEEEEEEETTTTE---EEEEECSSSCEEEEEETT
T ss_pred             EecccCcEEEEeCCCCc-EEEEeCCCCe-EEEEEEC-CCCCeeeEEEEcCCCc---EEEecCCCCCEEEEEccC
Confidence            997555 4444444554 6888886443 2333211 1234688999997 54   444432 23556666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=81.88  E-value=17  Score=31.80  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=52.4

Q ss_pred             EEEeeCCCccEEEEcCCCCccEEEEEEccCCcc--c---------ccCceEEEEeCCC----CCEEEEEe--CCCcEEEE
Q 019672          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--H---------CEAPLAAIVLSSN----GMYIATAS--EQGTIIRV  201 (337)
Q Consensus       139 ~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~--~---------~~~~i~~~~~s~d----g~~lat~s--~dg~~i~v  201 (337)
                      ..+.+.|++.++++.-  ..|.|.+++...++.  +         .......|+|+||    +.+.++-+  .+..+. -
T Consensus        35 ~~ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~-R  111 (347)
T 3das_A           35 WGLAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV-R  111 (347)
T ss_dssp             EEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE-E
T ss_pred             eEEEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE-E
Confidence            4556667777776653  268888887654332  1         0256789999995    54444322  333433 3


Q ss_pred             EEcCCC----------ceeE-eeccCCcceeEEEEEeecCCCcccEEEEEe
Q 019672          202 FLVSEA----------TKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATS  241 (337)
Q Consensus       202 wd~~~~----------~~~~-~~~~~~~~~~i~~l~fs~dg~~~~~las~s  241 (337)
                      |.+..+          +.+. .+..+. .+.-..|+|.|||.   ++++.+
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~-~H~g~~l~fgpDG~---Lyvt~G  158 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGV-IHNGGRIAFGPDKM---LYAGTG  158 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCS-SCCCCCEEECTTSC---EEEECB
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCC-CccCccccCCCCCC---EEEEEC
Confidence            554431          1121 122111 11235689999998   666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 77  LCLFNTTTGTALRELNFLTS-ILAVRL--NKKRLVIVLREKT-YIYDANTLAILDTIDTV 132
             L++   G   +      S I A+    N         + T  ++D      L T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN------VMELHSHCEAPLAAIVLSSNG 186
             + G+ + S S +   L   A     +  V++         L  H +  ++ + ++ +G
Sbjct: 268 NIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDG 324

Query: 187 MYIATASEQGTI 198
           M +AT S    +
Sbjct: 325 MAVATGSWDSFL 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 9/112 (8%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTI 198
             + P+     + + +S  +   +           E+ + ++  +  G +  +  +    
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL- 288

Query: 199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 250
           +  +        +  +     S++ S       ++   +V  S      V+ 
Sbjct: 289 LNAWRTPYGASIFQSK---ESSSVLSCDISVDDKY---IVTGSGDKKATVYE 334

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.22
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.89
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.88
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.81
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.64
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.63
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.34
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.24
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.01
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.75
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.6
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.35
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.12
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.09
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.96
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.91
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.82
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.72
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.71
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.39
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.81
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.37
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.76
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.51
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.87
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.31
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.42

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=250.20  Aligned_cols=270  Identities=14%  Similarity=0.135  Sum_probs=203.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE---EEE--E--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL---CYE--R--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~---~~~--~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .|..+|++++|+|+|++||+|+++.++|||+.+...   +..  .  +...+..+++.++++.++.++       .|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~-------~dg~i  121 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-------EASTL  121 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-------SSSEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee-------ccccc
Confidence            578899999999999999999976689999876532   111  1  123466677777777776554       48999


Q ss_pred             EEEECCCCCE--EEEEEc-CCceeEEEEcCCeEE--EEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEE
Q 019672           78 CLFNTTTGTA--LRELNF-LTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (337)
Q Consensus        78 ~iwd~~~~~~--~~~~~~-~~~v~~i~~~~~~~~--v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  151 (337)
                      ++||+.....  ...+.. ...+..+.++++...  ++. ++.|++||+.+++.......+..  .+.++++++++..++
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            9999875543  344443 347888999876533  333 78999999999988777665443  566777778888998


Q ss_pred             EcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          152 VPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      +++  .||.|++||+++++...    ..+|.+++|+|++++|++|+.||. |++||+.+++.....   .+...|.+++|
T Consensus       200 ~~~--~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~---~~~~~i~~v~~  273 (337)
T d1gxra_         200 TGG--LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLH---LHESCVLSLKF  273 (337)
T ss_dssp             EEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEEC---CCSSCEEEEEE
T ss_pred             ccc--ccccccccccccceeecccccccceEEEEEcccccccceeccccc-ccccccccccccccc---ccccccceEEE
Confidence            887  58999999999887653    388999999999999999999998 699999998876433   24567999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      +|+|+   +|++++.||+|+|||+.+.+....       .    . ....+          ..+.+.+++++|++++.||
T Consensus       274 s~~g~---~l~s~s~Dg~i~iwd~~~~~~~~~-------~----~-~~~~v----------~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         274 AYCGK---WFVSTGKDNLLNAWRTPYGASIFQ-------S----K-ESSSV----------LSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             CTTSS---EEEEEETTSEEEEEETTTCCEEEE-------E----E-CSSCE----------EEEEECTTSCEEEEEETTS
T ss_pred             CCCCC---EEEEEeCCCeEEEEECCCCCEEEE-------c----c-CCCCE----------EEEEEeCCCCEEEEEeCCC
Confidence            99999   999999999999999886653221       0    0 00111          1222345568999999999


Q ss_pred             cEEEEEE
Q 019672          308 YFVEYIF  314 (337)
Q Consensus       308 ~~~~~~~  314 (337)
                      ++++|++
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999987

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-33  Score=253.20  Aligned_cols=281  Identities=13%  Similarity=0.086  Sum_probs=200.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee--------------------CCEEEEEEccCCCEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV--------------------GAFSIVEMLYSSSLLAIV   64 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~   64 (337)
                      .|.+.|+|++|+|||++||+|+++.++|||+.+++.+.....                    ..+..+++.++++.++..
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            478999999999999999999977789999999887654321                    124455666666666654


Q ss_pred             eCCCCCCCCCceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           65 GAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        65 ~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      +       .|+.|++||..+++.+..... ...|.++.++++.  ++.+. ++.+++||+.+............  ....
T Consensus       140 ~-------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~  210 (388)
T d1erja_         140 A-------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--VTTV  210 (388)
T ss_dssp             E-------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEE
T ss_pred             c-------cccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc--cccc
Confidence            4       499999999999988887764 4589999997654  44444 78999999998877766554332  2333


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCccc------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCc
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSH------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  208 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~  208 (337)
                      ....+++.++++++  .||.|++||+.++...            |..+|.+++|+|+|++|++|+.||. |++||+.+++
T Consensus       211 ~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~  287 (388)
T d1erja_         211 AVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN  287 (388)
T ss_dssp             EECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred             cccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCc
Confidence            33345677888877  5899999999876543            2378999999999999999999997 6999998776


Q ss_pred             eeEeec----------cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceee
Q 019672          209 KSYSFR----------RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV  278 (337)
Q Consensus       209 ~~~~~~----------~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (337)
                      ......          ...+...|.+++|+|+++   +|++|+.||+|+|||+++++....           +......+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~~~~~~-----------l~~H~~~V  353 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE---YILSGSKDRGVLFWDKKSGNPLLM-----------LQGHRNSV  353 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGC---EEEEEETTSEEEEEETTTCCEEEE-----------EECCSSCE
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCC---EEEEEeCCCEEEEEECCCCcEEEE-----------EeCCCCCE
Confidence            432211          112345699999999999   999999999999999987654221           11000011


Q ss_pred             cccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          279 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       279 w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ...+    ......+.++++.|++++.||+|++|+++
T Consensus       354 ~~~~----~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         354 ISVA----VANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEE----ECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEE----EecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            1110    01122356777899999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-33  Score=246.07  Aligned_cols=274  Identities=9%  Similarity=0.083  Sum_probs=204.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .+....++++|+|+.|+.+..+.+.+|++++.+.....  +...+..+++.+++++++..+       .|++|+|||+.+
T Consensus        17 r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~-------~dg~i~iwd~~~   89 (311)
T d1nr0a1          17 RGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD-------VHGNVRIWDTTQ   89 (311)
T ss_dssp             TTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEESSS
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccc-------cCceEeeeeeec
Confidence            34566889999999999998888999999888654433  446677788888878776554       499999999988


Q ss_pred             CCEEE--EEE-cCCceeEEEEcCCe--EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE-EEEcCC
Q 019672           85 GTALR--ELN-FLTSILAVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF-LAVPAS  155 (337)
Q Consensus        85 ~~~~~--~~~-~~~~v~~i~~~~~~--~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-la~~~~  155 (337)
                      ++...  .+. +..+|.+++|+++.  +++++   +..+++|++.+++....+..+.+  .+.++.++|++.+ +++++ 
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~l~sgs-  166 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR--AMNSVDFKPSRPFRIISGS-  166 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS--CEEEEEECSSSSCEEEEEE-
T ss_pred             cccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc--ccccccccccceeeecccc-
Confidence            87543  344 45689999998764  44454   34599999999888887765544  4666667777665 56655 


Q ss_pred             CCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC-----CcceeEEEE
Q 019672          156 TTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----TYPSTIFSL  225 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~-----~~~~~i~~l  225 (337)
                       .||.|++||+++.+..     |..+|++++|+|++++|++++.||. |++||+.+++.+..+...     .|...|++|
T Consensus       167 -~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         167 -DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             -TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             -cccccccccccccccccccccccccccccccCcccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence             5899999999987754     3488999999999999999999998 689999999887776432     234579999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  305 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~  305 (337)
                      +|+|+++   +|++|+.||+|+|||+++.+..+.....    ...........|                .++.|++++.
T Consensus       245 ~~s~~~~---~l~tgs~Dg~v~iwd~~t~~~~~~l~~~----~~~~~~~~~~~~----------------~~~~l~s~s~  301 (311)
T d1nr0a1         245 TWSPDGT---KIASASADKTIKIWNVATLKVEKTIPVG----TRIEDQQLGIIW----------------TKQALVSISA  301 (311)
T ss_dssp             EECTTSS---EEEEEETTSEEEEEETTTTEEEEEEECC----SSGGGCEEEEEE----------------CSSCEEEEET
T ss_pred             ccCCCCC---EEEEEeCCCeEEEEECCCCcEEEEEECC----CCccceEEEEEe----------------cCCEEEEEEC
Confidence            9999999   9999999999999999876532210000    000000011112                2367999999


Q ss_pred             CCcEEEEEEe
Q 019672          306 NGYFVEYIFS  315 (337)
Q Consensus       306 dg~~~~~~~~  315 (337)
                      ||.+++|+.|
T Consensus       302 dG~i~~wd~d  311 (311)
T d1nr0a1         302 NGFINFVNPE  311 (311)
T ss_dssp             TCCEEEEETT
T ss_pred             CCEEEEEeCC
Confidence            9999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-32  Score=237.65  Aligned_cols=274  Identities=13%  Similarity=0.102  Sum_probs=194.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe---eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .++|..+|++++|+|||++|++|+.|+ +++||+++++.+....   ...+..+.+.++..+  ++++      .|+.++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--~~~~------~d~~v~   79 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL--FTVS------WDDHLK   79 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE--EEEE------TTTEEE
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee--eccc------ceeeEE
Confidence            368999999999999999999999887 6999999998776542   234555566555543  2333      389999


Q ss_pred             EEECCCCCE----EEEEEcCCceeEEEEcCCe--EEEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           79 LFNTTTGTA----LRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        79 iwd~~~~~~----~~~~~~~~~v~~i~~~~~~--~~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      +|+......    .....+...+.++.++++.  +++..++.+.+|+....  .... ..   ....+++++|++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~--~~~~-~~---~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL--TEVP-IS---YNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE--EEEE-CS---SCEEEEEECTTSCEEEE
T ss_pred             EeccCCccccccccccccccccccccccccccccccccccccccccccccc--cccc-cc---ccccccccccccccccc
Confidence            999765431    1223455678888887654  34444889999996432  2222 11   12455666778889998


Q ss_pred             cCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc-CCcceeEEEE
Q 019672          153 PASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSL  225 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~-~~~~~~i~~l  225 (337)
                      ++  .||.|.+||+.+.+..      |..+|++++|+|++++|++++.||. |++||+.++..+..... ..|...|+++
T Consensus       154 g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         154 GG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             EE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             cc--ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            87  5999999999876532      3488999999999999999999998 68999988876544321 2245679999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  305 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~  305 (337)
                      +|+|+++   +|++|+.||+|+|||+++........     ........+..+              +.+++++|++++.
T Consensus       231 ~~s~~~~---~l~sgs~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~--------------~~~~~~~l~s~s~  288 (299)
T d1nr0a2         231 SWSPDNV---RLATGSLDNSVIVWNMNKPSDHPIII-----KGAHAMSSVNSV--------------IWLNETTIVSAGQ  288 (299)
T ss_dssp             EECTTSS---EEEEEETTSCEEEEETTCTTSCCEEE-----TTSSTTSCEEEE--------------EEEETTEEEEEET
T ss_pred             ccccccc---ceEEEcCCCEEEEEECCCCCcceEEE-----ecCCCCCcEEEE--------------EECCCCEEEEEeC
Confidence            9999999   99999999999999998765432100     000000011111              1123478999999


Q ss_pred             CCcEEEEEEe
Q 019672          306 NGYFVEYIFS  315 (337)
Q Consensus       306 dg~~~~~~~~  315 (337)
                      ||.|++|++.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-30  Score=229.78  Aligned_cols=275  Identities=17%  Similarity=0.174  Sum_probs=202.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +.+|.++|++++|+|++++||+|+.|+ ++|||+.+++.+.....  ..+..+++.++.+.++..+.       |+.+++
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------d~~i~~  123 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-------DNICSI  123 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET-------TCCEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc-------cceeec
Confidence            347999999999999999999999887 69999999988776654  45666677767777766554       899999


Q ss_pred             EECCCCC----EEEEEEcCCc-eeEEEEcC-CeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEE
Q 019672           80 FNTTTGT----ALRELNFLTS-ILAVRLNK-KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        80 wd~~~~~----~~~~~~~~~~-v~~i~~~~-~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      |+.....    ....+..+.. ........ ..+.... +.....++..............  ..+......+...++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT--GDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccc--eeEeeeccccccceeEE
Confidence            9976543    3334443332 33333333 3333333 7788888887765555444332  34555566667778887


Q ss_pred             cCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          153 PASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      ++  .|+.|++||+++++..     |..+|++++|+|+|++||+|+.||. |++||+...+.+..+....+...|.+++|
T Consensus       202 ~~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  278 (340)
T d1tbga_         202 GA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EE--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             ee--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEEEEE
Confidence            77  5899999999987754     3488999999999999999999998 69999999988877765555667999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCC
Q 019672          228 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  307 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg  307 (337)
                      +|+++   +|++|+.||+|+|||+.+.+....           +...          ...+..+.+.+++++|++++.||
T Consensus       279 s~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-----------~~~H----------~~~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         279 SKSGR---LLLAGYDDFNCNVWDALKADRAGV-----------LAGH----------DNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             CSSSC---EEEEEETTSCEEEEETTTCCEEEE-----------ECCC----------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             CCCCC---EEEEEECCCEEEEEECCCCcEEEE-----------EcCC----------CCCEEEEEEeCCCCEEEEEccCC
Confidence            99999   999999999999999976543221           1110          11122233455668999999999


Q ss_pred             cEEEEE
Q 019672          308 YFVEYI  313 (337)
Q Consensus       308 ~~~~~~  313 (337)
                      .|++|+
T Consensus       335 ~v~iWd  340 (340)
T d1tbga_         335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999995

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-31  Score=231.47  Aligned_cols=273  Identities=14%  Similarity=0.127  Sum_probs=210.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      +.+|.++|++++|+|++++|++|+.|+ ++|||+++++++.....  ..+..+.+.++...++....       ++.+.+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~-------~~~~~~   85 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-------DMTIKL   85 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-------TSCCCE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc-------cccccc
Confidence            357899999999999999999999887 69999999988776654  45566666666666665554       789999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      |+....+....+.. ...+..+.++++.  ++.+. |+.+++||+++++.+..+..+..  .+.++.+++++.++++++ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-  162 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCS-  162 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEE-
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCEEEEEe-
Confidence            99988877665543 4577888887653  44444 88999999999988888875543  466777788888999888 


Q ss_pred             CCccEEEEEEccCCcccc-----cCceEEEEeCCC--------------------CCEEEEEeCCCcEEEEEEcCCCcee
Q 019672          156 TTKGSVLVYNVMELHSHC-----EAPLAAIVLSSN--------------------GMYIATASEQGTIIRVFLVSEATKS  210 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~d--------------------g~~lat~s~dg~~i~vwd~~~~~~~  210 (337)
                       .|+.|++|++.+.....     ...+.+++|+|+                    +.++++++.||. |++||+.+++.+
T Consensus       163 -~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~  240 (317)
T d1vyhc1         163 -NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCL  240 (317)
T ss_dssp             -TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEE
T ss_pred             -CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcEE
Confidence             59999999998876542     377888888775                    457999999997 699999999999


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  290 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  290 (337)
                      .++..  +...|.+++|+|+++   +|++|+.||+|+|||+++.+....           +...          ...+..
T Consensus       241 ~~~~~--~~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~-----------~~~h----------~~~V~~  294 (317)
T d1vyhc1         241 MTLVG--HDNWVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRCMKT-----------LNAH----------EHFVTS  294 (317)
T ss_dssp             EEEEC--CSSCEEEEEECSSSS---CEEEEETTTEEEEECCTTSCCCEE-----------EECC----------SSCEEE
T ss_pred             EEEeC--CCCCEEEEEECCCCC---EEEEEECCCeEEEEECCCCcEEEE-----------EcCC----------CCCEEE
Confidence            88853  356799999999999   999999999999999986543221           1100          011223


Q ss_pred             cCCCcccCEEEEEEeCCcEEEEE
Q 019672          291 FPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       291 ~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                      +.+.++++.|++++.||+|++|+
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            33456668999999999999994

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.3e-31  Score=232.57  Aligned_cols=234  Identities=18%  Similarity=0.221  Sum_probs=184.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE--EEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ..|..+|++++|+|+|++||+|+.++ ++|||+.+++..  ...  +...+..+++.++++.++.++.+     .++.++
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-----~~~~~~  129 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-----RERFGH  129 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-----SSCSEE
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-----cccccc
Confidence            46889999999999999999998887 699999887543  223  23556777777777888777653     467899


Q ss_pred             EEECCCCCEEEEEEcC-CceeEEEEcCCe--EEE-EE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           79 LFNTTTGTALRELNFL-TSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      +|++++++.+.++..+ ..|.++.|++++  +++ +. |+.|++||+++++....+..+..  .+.++.++|++.+++++
T Consensus       130 v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~--~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccc--cccccccCccccccccc
Confidence            9999999888777654 479999998753  333 33 78999999999988888765543  57778888899999988


Q ss_pred             CCCCccEEEEEEccCCccc------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc-ce
Q 019672          154 ASTTKGSVLVYNVMELHSH------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-PS  220 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~-~~  220 (337)
                      +  .||.|++||+.+....            |..+|++++|+|+|++|++|+.||+ |+|||+++++++.++..+.. ..
T Consensus       208 ~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         208 G--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             E--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             c--ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccc
Confidence            7  4999999999876432            3478999999999999999999997 69999999999988864432 22


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      .+.++.|  ++.   +|++++.||.|++||++
T Consensus       285 ~~~~~~~--~~~---~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIW--TKQ---ALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEE--CSS---CEEEEETTCCEEEEETT
T ss_pred             eEEEEEe--cCC---EEEEEECCCEEEEEeCC
Confidence            3555555  455   79999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-30  Score=230.12  Aligned_cols=228  Identities=11%  Similarity=0.118  Sum_probs=183.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc--EEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+.++|++++|+|||++|++|+.++ +++||+....  .......  ..+..+.+.++...++..+       .|+.|++
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~i~~  167 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-------SDGNIAV  167 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-------TTSCEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccc-------ccccccc
Confidence            5677899999999999999998877 6999987553  3333333  3445555655556665544       4899999


Q ss_pred             EECCCCCEEEEEEc-CCceeEEEEcCC--eEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           80 FNTTTGTALRELNF-LTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      ||+.++++...... ...|.+++++++  .++++. |+.+++||+++++.+..+..   ...+.+++++|++.++++++ 
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~-  243 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccc---ccceEEEEEcccccccceec-
Confidence            99999988777654 458999999765  455555 89999999999988877653   23577788888888999887 


Q ss_pred             CCccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          156 TTKGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                       .||.|++||+.+....    |..+|++++|+|+|++|++|+.||. |++||+.+++.+..+.   +...|.+++|+||+
T Consensus       244 -~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~  318 (337)
T d1gxra_         244 -ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVDD  318 (337)
T ss_dssp             -TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTTS
T ss_pred             -cccccccccccccccccccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCCC
Confidence             5899999999887653    4488999999999999999999997 6999999999988764   34579999999999


Q ss_pred             CcccEEEEEeCCCcEEEEec
Q 019672          232 QFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       232 ~~~~~las~s~dg~v~iw~l  251 (337)
                      +   +|++|+.||+|+||||
T Consensus       319 ~---~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         319 K---YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             C---EEEEEETTSCEEEEEE
T ss_pred             C---EEEEEeCCCeEEEEEE
Confidence            9   9999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=2.7e-30  Score=233.65  Aligned_cols=232  Identities=13%  Similarity=0.094  Sum_probs=176.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcE--EEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+||+|++|+|||++||+|+.++ ++|||+++++.  +...+  ...+..+++.++.++++.++       .|++|+||
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-------~D~~i~vW   78 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-------TDRNAYVW   78 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-------TTSCEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-------CCCeEEEE
Confidence            347899999999999999999887 69999987753  33333  35677777888888877655       48999999


Q ss_pred             ECCCCCEEEEEE---cCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeee--cCCCCCceEEEEeeCCCccEEEE
Q 019672           81 NTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        81 d~~~~~~~~~~~---~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      |+.++.....+.   +...|.++.|+|+.  ++++. ++.+++|++.........  ....+...+.+++++|++.++++
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             eecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            998877655543   34579999998754  44444 889999988654322111  12233446778888999999999


Q ss_pred             cCCCCccEEEEEEccCCcc-----------------------cccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce
Q 019672          153 PASTTKGSVLVYNVMELHS-----------------------HCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~-----------------------~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~  209 (337)
                      ++  .||.|++||+.....                       .+...|.+++|+|+|++||+++.||+ |++||+.+++.
T Consensus       159 ~s--~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~  235 (371)
T d1k8kc_         159 GS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMA  235 (371)
T ss_dssp             EE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTE
T ss_pred             cc--cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccc
Confidence            88  599999999864321                       12267999999999999999999997 69999999999


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      +..+..  +..+|.+++|+||++   +|++|+ |+.+++|..+.
T Consensus       236 ~~~~~~--~~~~v~s~~fs~d~~---~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         236 VATLAS--ETLPLLAVTFITESS---LVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEEC--SSCCEEEEEEEETTE---EEEEET-TSSCEEEEEET
T ss_pred             eeeeec--ccccceeeeecCCCC---EEEEEc-CCceEEEEeeC
Confidence            988853  356799999999998   777655 67777776543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-29  Score=223.94  Aligned_cols=233  Identities=13%  Similarity=0.182  Sum_probs=182.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      .+...|++++|+|+|++|++|+.++ +++||...++.+.....  ..+..+.+......++..+       .++.+++||
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-------~~~~i~~~d  191 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-------GDRTVRIWD  191 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccc-------cceeeeeee
Confidence            5667799999999999999999888 59999999988776643  4455566666666665544       389999999


Q ss_pred             CCCCCEEEEEEcCCceeEEEEcC---CeEEEEE-CCeEEEEECCCCeeeeeecCC-----CCCceEEEEeeCCCccEEEE
Q 019672           82 TTTGTALRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTV-----PNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~---~~~~v~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~la~  152 (337)
                      .++...............+.+.+   +.++++. |+.|++||+.++..+..+...     .+...+.++.++|++.++++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            99998888887777776666643   3444444 889999999998877666432     12345778888889999998


Q ss_pred             cCCCCccEEEEEEccCCccc-----------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          153 PASTTKGSVLVYNVMELHSH-----------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~-----------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      ++  .||.|++||+.+....                 |...|.+++|+|+|++|++|+.||+ |++||+++++++.++..
T Consensus       272 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         272 GS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EE--TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred             EE--CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEeC
Confidence            88  5999999999765432                 2378999999999999999999997 69999999999998853


Q ss_pred             CCcceeEEEEE------eecCCCcccEEEEEeCCCcEEEEecC
Q 019672          216 GTYPSTIFSLS------FGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       216 ~~~~~~i~~l~------fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                        |...|.+++      |+|+++   +||+|+.||+|+||+++
T Consensus       349 --H~~~V~~~~~~~~~~~spd~~---~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         349 --HRNSVISVAVANGSSLGPEYN---VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             --CSSCEEEEEECSSCTTCTTCE---EEEEEETTSEEEEEEEE
T ss_pred             --CCCCEEEEEEecCcccCCCCC---EEEEEeCCCEEEEEeee
Confidence              356788886      567898   99999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.7e-28  Score=217.85  Aligned_cols=272  Identities=11%  Similarity=0.099  Sum_probs=183.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCce--EEEeCCCC--cEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTKDGF--KIFDSSTG--RLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g~--~vw~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+++++|+|+|..|+.++.+..  +.|+....  ........   ..+..+++.+..+...+++++     .|++|+||
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs-----~Dg~i~iW   92 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-----ESGKVIVW   92 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-----TTSEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe-----CCCCEEEe
Confidence            35789999999999998877764  55554333  22334332   246667776544433333332     59999999


Q ss_pred             ECCCCCEEEE--------E-EcCCceeEEEEcCCe--EEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           81 NTTTGTALRE--------L-NFLTSILAVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        81 d~~~~~~~~~--------~-~~~~~v~~i~~~~~~--~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      |+..++....        + .+..+|.++.|+++.  ++++.   ++.+.+|+..+++.+..+..+..  .+.++.++++
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~  170 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ--RINACHLKQS  170 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS--CEEEEEECSS
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc--cccccccccc
Confidence            9876542211        1 234589999998764  44444   55799999999988888876544  4555566666


Q ss_pred             ccE-EEEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCC-CCEEEEEeCCCcEEEEEEcCCCceeEeeccC
Q 019672          147 ACF-LAVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRG  216 (337)
Q Consensus       147 ~~~-la~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~d-g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~  216 (337)
                      +.+ +++++  .|+.|++||+...+..        +...|.+++|+|+ +.+||+++.||. |++||+++++.+..+..+
T Consensus       171 ~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         171 RPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             SSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCBT
T ss_pred             ccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeecccccccccccc
Confidence            654 45555  5899999998776532        2377999999997 689999999998 699999999999888532


Q ss_pred             Ccc--eeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccc---cceeecccccceeeeecc
Q 019672          217 TYP--STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE---SVNEVLDPADHHVLRNAF  291 (337)
Q Consensus       217 ~~~--~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~  291 (337)
                      ...  ..+++++| |||+   +|++++.|++|+|||+++++..+.      +.......   .....|            
T Consensus       248 ~~~v~~~~~s~~~-~dg~---~l~s~s~D~~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~~~------------  305 (325)
T d1pgua1         248 QEPVQGGIFALSW-LDSQ---KFATVGADATIRVWDVTTSKCVQK------WTLDKQQLGNQQVGVVA------------  305 (325)
T ss_dssp             TBCCCSCEEEEEE-SSSS---EEEEEETTSEEEEEETTTTEEEEE------EECCTTCGGGCEEEEEE------------
T ss_pred             ccccccceeeeec-cCCC---EEEEEeCCCeEEEEECCCCCEEEE------EEecCCcccCeEEEEEE------------
Confidence            211  12444444 6788   999999999999999987653221      00000000   001111            


Q ss_pred             CCCcccCEEEEEEeCCcEEEEEE
Q 019672          292 PAGVKRASVSVITYNGYFVEYIF  314 (337)
Q Consensus       292 ~~~~~~~~l~~~~~dg~~~~~~~  314 (337)
                         ..+.+|++++.||++++|++
T Consensus       306 ---~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         306 ---TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ---EETTEEEEEETTSCEEEEET
T ss_pred             ---CCCCEEEEEECCCEEEEEEC
Confidence               12257999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=7.5e-27  Score=202.82  Aligned_cols=230  Identities=13%  Similarity=0.162  Sum_probs=181.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ..+..+|++++|+|++.+++++..++ +.+|+....+.......  ..+....+.++.+.++..+       .|+.+++|
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~~~~  128 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS-------RDKTIKMW  128 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE-------TTSEEEEE
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeec-------cCcceeEe
Confidence            45788999999999999999888776 48898887766554432  3455556666677766555       38999999


Q ss_pred             ECCCCCEEEEEEcC-CceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC----------
Q 019672           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----------  146 (337)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  146 (337)
                      |+++++.+..+..+ ..+.++.++++.  ++.+. |+.|++|++.+++.+..+..+...  +.++..+++          
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV--VECISWAPESSYSSISEAT  206 (317)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECCSCGGGGGGGCC
T ss_pred             ecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC--ceEEEEeeccccceeeccc
Confidence            99999998888754 478889998754  33334 889999999998888777655443  333333222          


Q ss_pred             ----------ccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          147 ----------ACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       147 ----------~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                                +.++++++  .||.|++||+.+++..     |..+|.+++|+|+|++||+|+.||. |+|||+++++.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~  283 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  283 (317)
T ss_dssp             SCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             cceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEE
Confidence                      34566666  5899999999988765     3488999999999999999999997 6999999999998


Q ss_pred             eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          212 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       212 ~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      ++..  |...|++|+|+|+++   +|++|+.||+|+|||
T Consensus       284 ~~~~--h~~~V~~~~~s~~~~---~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNA--HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEC--CSSCEEEEEECSSSS---CEEEEETTSEEEEEC
T ss_pred             EEcC--CCCCEEEEEEcCCCC---EEEEEeCCCeEEEeC
Confidence            8853  356799999999999   999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-26  Score=204.06  Aligned_cols=277  Identities=13%  Similarity=0.163  Sum_probs=183.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      +.+|.++|.+ +++++|++||+|+.|+ ++|||+.+++++.....|.-.+..+.++++.++.++       .|+++++|+
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s-------~D~~~~~~~   83 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS-------TDRTLKVWN   83 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEE-------TTSCEEEEE
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccce-------ecccccccc
Confidence            3578888865 3667899999999887 699999999988877655545555556677665544       388888888


Q ss_pred             CCCCCEEEEEEcCC-ceeEEE----------------------------------------EcCCeEEEEE-CCeEEEEE
Q 019672           82 TTTGTALRELNFLT-SILAVR----------------------------------------LNKKRLVIVL-REKTYIYD  119 (337)
Q Consensus        82 ~~~~~~~~~~~~~~-~v~~i~----------------------------------------~~~~~~~v~~-d~~i~i~d  119 (337)
                      .............. .+....                                        .....++.+. ++.+++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            77654433322111 111111                                        1222333333 67788888


Q ss_pred             CCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeC
Q 019672          120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASE  194 (337)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~  194 (337)
                      +...+.+..+..+.  .....++++  +.++++++  .||.|++||+...+...     ...+.++++++  ++|++|+.
T Consensus       164 ~~~~~~~~~~~~~~--~~~~~~~~~--~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~  235 (342)
T d2ovrb2         164 PETETCLHTLQGHT--NRVYSLQFD--GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNA  235 (342)
T ss_dssp             GGGTEEEEEECCCS--SCEEEEEEC--SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEET
T ss_pred             cccceeeEEEcCcc--cccccccCC--CCEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcC
Confidence            87777666665443  234455554  45788877  59999999999877653     36777777654  69999999


Q ss_pred             CCcEEEEEEcCCCceeEeeccCC-cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccc
Q 019672          195 QGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE  273 (337)
Q Consensus       195 dg~~i~vwd~~~~~~~~~~~~~~-~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~  273 (337)
                      ||. |++||+...+....+.... +...+.+++|+  +.   ++++|+.||+|+|||+++++..+.      +.....+.
T Consensus       236 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~s~s~Dg~i~iwd~~tg~~i~~------~~~~~~~~  303 (342)
T d2ovrb2         236 DST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN---FVITSSDDGTVKLWDLKTGEFIRN------LVTLESGG  303 (342)
T ss_dssp             TSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEEE------EEECTTGG
T ss_pred             CCE-EEEEecccccccccccccceeeeceeecccC--CC---eeEEEcCCCEEEEEECCCCCEEEE------EecccCCC
Confidence            998 6999999988877764322 23456666665  45   899999999999999987654221      00000011


Q ss_pred             cceeecccccceeeeeccCCCcccCEEEEEEeCCc----EEEEEEecC
Q 019672          274 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY----FVEYIFSIN  317 (337)
Q Consensus       274 ~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----~~~~~~~~~  317 (337)
                      ....+|          .+.+.+++..+++|+.||+    +++|+|+.+
T Consensus       304 ~~~~v~----------~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         304 SGGVVW----------RIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             GTCEEE----------EEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCEE----------EEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            111233          3334566678889999985    899988754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-27  Score=211.53  Aligned_cols=233  Identities=15%  Similarity=0.148  Sum_probs=173.5

Q ss_pred             CCCeEEEEEcC--CCCEEEEEcCCc-eEEEeCCCCcEE----------EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCC
Q 019672            7 SYPVFFVSFNQ--DNSGFALSTKDG-FKIFDSSTGRLC----------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (337)
Q Consensus         7 ~~~v~~~~fs~--dg~~la~g~~~g-~~vw~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (337)
                      ..+|++++|+|  +|.+|++|+.|+ ++|||+..++..          +......+..+.+.+++..++.++.+     .
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-----~  137 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-----R  137 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-----S
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-----c
Confidence            46799999997  668999998877 699998655321          11122456667777778888877764     5


Q ss_pred             CceEEEEECCCCCEEEEEEc-CCceeEEEEcCCe---EEEEE-CCeEEEEECCCCeeeeeecCC-CCCceEEEEeeCCC-
Q 019672           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLN-  146 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~---~~v~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-  146 (337)
                      ++.+++|+..+++++..+.. ...|.++.|+++.   ++.+. |+.+++||+...+....+... .+...+.+++++|+ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence            78999999999999888764 4589999997653   33344 899999999988777666543 33445677777775 


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeC---CCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  218 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s---~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~  218 (337)
                      +.++++++  .||.|++||+++++...     ..++.++.|+   |||++|++++.||+ |+|||+++++.+..+..+.+
T Consensus       218 ~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         218 GEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTT
T ss_pred             ceeccccc--cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCC
Confidence            56788777  59999999999887542     3445444444   68999999999997 79999999999988765443


Q ss_pred             cee--EEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          219 PST--IFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       219 ~~~--i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      ...  ..++.+.+++    +|+++|.||+|+||||
T Consensus       295 ~~~~~~~~~~~~~~~----~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVGVVATGNG----RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEEEEEEETT----EEEEEETTSCEEEEET
T ss_pred             cccCeEEEEEECCCC----EEEEEECCCEEEEEEC
Confidence            333  3344555544    7999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.8e-27  Score=204.37  Aligned_cols=261  Identities=15%  Similarity=0.143  Sum_probs=178.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCC-EEEEEeCCCCCCCCCceEEEE
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .++|..+|++++|+|    |++|+.|| +++||+.++..   .+...+..+.  +..+ .++.++       .|+++++|
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~---~h~~~V~~~~--~~~~~~~~s~s-------~D~~v~~w   72 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ---DHSNLIVSLD--NSKAQEYSSIS-------WDDTLKVN   72 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC---CCCSCEEEEE--CCSTTCCEEEE-------TTTEEEET
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC---CCCCCEEEEE--ecCCCeEEEEe-------eccccccc
Confidence            468999999999998    88888887 69999876432   2223344444  3333 333333       58999999


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEcCCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      +...      ..+...+..+.++++...++.  ++.+.+|+..+++.+..+....   ...++++++  ..+++++. .+
T Consensus        73 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~v~~~-~~  140 (287)
T d1pgua2          73 GITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQ--NYVAVGLE-EG  140 (287)
T ss_dssp             TEEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECS--SEEEEEET-TT
T ss_pred             cccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccC--cceeeecc-cc
Confidence            8643      334556777777776554443  7889999999988887776433   245566553  45665553 35


Q ss_pred             cEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCC
Q 019672          159 GSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       159 g~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                      +.|++|++......      +..++++++|+|+|++||+|+.||. |++||+.+++.+.... ..|...|.+++|+|++.
T Consensus       141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~-~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRW-AFRTSKINAISWKPAEK  218 (287)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCS-CCCSSCEEEEEECCCC-
T ss_pred             ceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeecccccccccc-cccccccceeeeccccc
Confidence            68999998755432      3378999999999999999999998 6999999988765432 23466799999987541


Q ss_pred             -------cccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe
Q 019672          233 -------FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  305 (337)
Q Consensus       233 -------~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~  305 (337)
                             ..++|++|+.|++|+|||++++.+...          .+......+          ..+.+.++ .++++++.
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~----------~~~~h~~~V----------~~v~~~~~-~~l~s~g~  277 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK----------ALNAHKDGV----------NNLLWETP-STLVSSGA  277 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEE----------ETTSSTTCE----------EEEEEEET-TEEEEEET
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCCeEEE----------EeCCCCCCe----------EEEEECCC-CEEEEEEC
Confidence                   012899999999999999976443211          110000111          11122222 57999999


Q ss_pred             CCcEEEEEE
Q 019672          306 NGYFVEYIF  314 (337)
Q Consensus       306 dg~~~~~~~  314 (337)
                      ||.+++|++
T Consensus       278 D~~v~iW~i  286 (287)
T d1pgua2         278 DACIKRWNV  286 (287)
T ss_dssp             TSCEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.8e-26  Score=203.36  Aligned_cols=229  Identities=11%  Similarity=0.109  Sum_probs=174.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc----EEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      .+..+|++++|+|++.++++|+.++ +++|+.....    .......+ .............+....       .+....
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  167 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS-------GDTTCA  167 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE-------TTTEEE
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccc-------cccccc
Confidence            5678999999999999999998887 5999876542    22222222 122222222333443333       378899


Q ss_pred             EEECCCCCEEEEEEc-CCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           79 LFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      .|+............ ...+....+.+..  ++.+. |+.|++||+++++.+..+..+..  .+.+++++|++.++++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~--~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC--CeEEEEECCCCCEEEEEe
Confidence            998887766555443 3467777665543  33333 88999999999999988876544  567777888888999987


Q ss_pred             CCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                        .||.|++||+.......       ..+|.+++|+|+|++|++|+.||. |+|||+.+++.+.++. + |..+|++|+|
T Consensus       246 --~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~-H~~~V~~l~~  320 (340)
T d1tbga_         246 --DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLA-G-HDNRVSCLGV  320 (340)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEEC-C-CSSCEEEEEE
T ss_pred             --CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEc-C-CCCCEEEEEE
Confidence              59999999998776532       277999999999999999999998 6999999999999885 3 3568999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEe
Q 019672          228 GQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +||++   +|++||.||+|+|||
T Consensus       321 s~d~~---~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSS---CEEEEETTSCEEEEC
T ss_pred             eCCCC---EEEEEccCCEEEEeC
Confidence            99999   999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-26  Score=198.27  Aligned_cols=273  Identities=14%  Similarity=0.154  Sum_probs=187.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      +.+...|+|++|  ||++||+|+.|+ ++|||+++++.+.....|.-.+.++.++++.++..+       .|++|++|++
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s-------~D~~i~~~~~   82 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-------SDSTVRVWDV   82 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEE-------TTSCEEEEES
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccc-------cccccccccc
Confidence            466788999765  789999999888 699999999988887666656677788888766554       4999999999


Q ss_pred             CCCCEEEEEEcCCc-eeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeee-cCCCCCceEEEEeeCCCccEEEEcCCCCcc
Q 019672           83 TTGTALRELNFLTS-ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (337)
Q Consensus        83 ~~~~~~~~~~~~~~-v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~dg  159 (337)
                      ..+........... ..........++.+. ++.+.+||+......... ....+...+..+.+.+.  .+++++  .|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s--~d~  158 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSAS--GDR  158 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEEE--TTS
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc--cccccc--CCC
Confidence            99988777665553 333334445555555 789999999766432222 11223334555555443  455555  489


Q ss_pred             EEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          160 SVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                      .|++||+.+.+....     ..+..+.++  +.+|++++.||+ |++||+++++.+..+..  +...+.  .+++++.  
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~--~~~~~~~--  229 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVR--CIRFDNK--  229 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEE--EEECCSS--
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeecc--cceeee--eccccce--
Confidence            999999998876532     566666664  569999999998 69999999998877742  233454  4667787  


Q ss_pred             cEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEE
Q 019672          235 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  313 (337)
Q Consensus       235 ~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~  313 (337)
                       +|++|+.||+|+|||+.....+...... ... ..+......+++.          .+  ++++|++++.||++++|+
T Consensus       230 -~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~-~~~~~H~~~V~~v----------~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         230 -RIVSGAYDGKIKVWDLVAALDPRAPAGT-LCL-RTLVEHSGRVFRL----------QF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -EEEEEETTSCEEEEEHHHHTSTTSCTTT-TEE-EEECCCSSCCCCE----------EE--CSSCEEECCSSSEEEEEC
T ss_pred             -EEEEEcCCCEEEEEECCCCccccccCCc-eee-EEecCCCCCEEEE----------EE--cCCEEEEEecCCEEEEeC
Confidence             9999999999999998765443321100 000 0111111112211          11  346899999999999995

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.4e-26  Score=199.34  Aligned_cols=230  Identities=12%  Similarity=0.162  Sum_probs=168.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcE-----EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL-----CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      ..+..+|++++|+|+|++++++.++.+++|+......     ........+..+.+.++...++..        .++.++
T Consensus        52 ~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~--------~~~~i~  123 (299)
T d1nr0a2          52 DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA--------CYKHIA  123 (299)
T ss_dssp             CSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE--------ESSEEE
T ss_pred             CCCCCcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc--------cccccc
Confidence            3577899999999999999999888899999765421     222223445556666666654433        267999


Q ss_pred             EEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           79 LFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +|+..   ..........+.+++++++.  ++++. ++.|++||+++++...... ..+...+.+++++|++.++++++ 
T Consensus       124 ~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-  198 (299)
T d1nr0a2         124 IYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATD-  198 (299)
T ss_dssp             EEETT---EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEE-
T ss_pred             ccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-
Confidence            99954   24445556678888888764  44444 8899999998776543221 12334677888888999999887 


Q ss_pred             CCccEEEEEEccCCccc--------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee-ccCCcceeEEEEE
Q 019672          156 TTKGSVLVYNVMELHSH--------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-RRGTYPSTIFSLS  226 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~-~~~~~~~~i~~l~  226 (337)
                       .+|.|++||+.+....        |..+|++++|+|+|++||+|+.||. |+|||+++++....+ ...++...|.++.
T Consensus       199 -~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         199 -QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             -TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             -cccccccccccccccccccccccccccccccccccccccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence             5899999999875432        3478999999999999999999998 699999987654333 2333345677765


Q ss_pred             eecCCCcccEEEEEeCCCcEEEEecC
Q 019672          227 FGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       227 fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                      | ++++   +|++++.|++|+|||+.
T Consensus       277 ~-~~~~---~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         277 W-LNET---TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             E-EETT---EEEEEETTSCEEEEECC
T ss_pred             E-CCCC---EEEEEeCCCEEEEEecc
Confidence            5 5566   89999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=203.56  Aligned_cols=269  Identities=11%  Similarity=0.128  Sum_probs=180.0

Q ss_pred             CCCCCCCe-EEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC--CEEEEEEccCCCEEEEEeCCCCCCCCCceEE
Q 019672            3 NQSSSYPV-FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (337)
Q Consensus         3 ~~~~~~~v-~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~   78 (337)
                      +.+|...| +|++|  |+++|++|+.|+ ++|||+.+++.+.....|  .+..+++.+ .+.++. ++      .|++|+
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~~l~s-~s------~D~~i~   77 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVS-GS------TDRTVR   77 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-TTEEEE-EE------TTCCEE
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CCEEEE-Ee------cccccc
Confidence            34687774 77666  578999999887 699999999988777654  455555543 344433 33      599999


Q ss_pred             EEECCCCCEEEEEEcCC---ceeEEEEcCCeEEE--EE-CCeEEEEECCCCeeeeeecCC----------C---------
Q 019672           79 LFNTTTGTALRELNFLT---SILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTV----------P---------  133 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~v--~~-d~~i~i~d~~~~~~~~~~~~~----------~---------  133 (337)
                      +|+....+.........   ......+.++...+  +. |+.|++||+++..........          .         
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            99999988776665443   23334455554333  33 889999999876443222110          0         


Q ss_pred             --CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCC
Q 019672          134 --NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  206 (337)
Q Consensus       134 --~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~  206 (337)
                        +...+.+..+  ++.+++++.  .|+.|++||+.+++...     ...+.++.|+|+++++++++.||+ |++||+++
T Consensus       158 ~~~~~~v~~~~~--~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~  232 (355)
T d1nexb2         158 RGHMASVRTVSG--HGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN  232 (355)
T ss_dssp             ECCSSCEEEEEE--ETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT
T ss_pred             eecccccccccc--ccceeeeec--ccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeeccc
Confidence              0111223333  345777766  48999999999877543     278899999999999999999998 69999999


Q ss_pred             CceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccccccee
Q 019672          207 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  286 (337)
Q Consensus       207 ~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  286 (337)
                      ++.+..+..  |...|.+++|++  +   +|++++.||+|++||+++.....        . .....    +...     
T Consensus       233 ~~~~~~~~~--h~~~v~~~~~~~--~---~l~~~~~dg~i~iwd~~~~~~~~--------~-~~~~~----~~~~-----  287 (355)
T d1nexb2         233 GELMYTLQG--HTALVGLLRLSD--K---FLVSAAADGSIRGWDANDYSRKF--------S-YHHTN----LSAI-----  287 (355)
T ss_dssp             CCEEEEECC--CSSCCCEEEECS--S---EEEEECTTSEEEEEETTTCCEEE--------E-EECTT----CCCC-----
T ss_pred             ccccccccc--cccccccccccc--c---eeeeeecccccccccccccceec--------c-cccCC----ceEE-----
Confidence            999888753  456789999874  5   89999999999999997654311        0 00000    0000     


Q ss_pred             eeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          287 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                           .+.+.++++++++.||.+++|++.+
T Consensus       288 -----~~~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         288 -----TTFYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             -----CEEEECSSEEEEEETTEEEEEETTT
T ss_pred             -----EEEcCCCCEEEEEeCCEEEEEECCC
Confidence                 0111224577777899999999854

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-26  Score=208.27  Aligned_cols=242  Identities=18%  Similarity=0.216  Sum_probs=160.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCc------EEEEEe--eCC---EEEEEE-ccCC-CEEEEEeCCC
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR------LCYERA--VGA---FSIVEM-LYSS-SLLAIVGAGE   68 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~------~~~~~~--~~~---~~~~~~-~~~~-~~~~~~~~g~   68 (337)
                      ..+|..+|+++++++  +++++++.|+ ++|||..+.+      ......  ..+   +..... ..+. ....+++++ 
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-   86 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS-   86 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE-
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe-
Confidence            468999999999875  5788888776 6999976542      122111  111   222222 2222 222333332 


Q ss_pred             CCCCCCceEEEEECCCCCEE---EE--EE------cCCceeEEEEcCC-------eEEEEE-CCeEEEEECCCCe-----
Q 019672           69 QPSLSPRRLCLFNTTTGTAL---RE--LN------FLTSILAVRLNKK-------RLVIVL-REKTYIYDANTLA-----  124 (337)
Q Consensus        69 ~~~~~d~~v~iwd~~~~~~~---~~--~~------~~~~v~~i~~~~~-------~~~v~~-d~~i~i~d~~~~~-----  124 (337)
                          .|++|++|++......   ..  ..      ....+..+.+..+       .++.+. |+.+++|++....     
T Consensus        87 ----~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          87 ----FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             ----TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             ----CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence                5899999997544321   11  11      1234556665432       333444 8999999984221     


Q ss_pred             ----------eeeeecC-CCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----------ccCceEEEEe
Q 019672          125 ----------ILDTIDT-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----------CEAPLAAIVL  182 (337)
Q Consensus       125 ----------~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----------~~~~i~~~~~  182 (337)
                                ....... ......+.+++++|++ ++|+++  .||+|+|||+.+++..           |..+|++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                      0111111 1112234566777776 778877  5999999999877643           3478999999


Q ss_pred             CCCCCEEEEEeCCCc--EEEEEEcCCCceeEeeccC-----------CcceeEEEEEeecCCCcccEEEEEeCCCcEEEE
Q 019672          183 SSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRG-----------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF  249 (337)
Q Consensus       183 s~dg~~lat~s~dg~--~i~vwd~~~~~~~~~~~~~-----------~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw  249 (337)
                      +|||++||+|+.|++  .|++||+++++.+..+...           .|...|++|+|+||++   +|++||.|++|+||
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~---~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKLRFW  316 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEEEEE
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC---eeEEECCCCEEEEE
Confidence            999999999999975  4799999999988877421           2456799999999999   99999999999999


Q ss_pred             ecCCCccc
Q 019672          250 SPGFAINQ  257 (337)
Q Consensus       250 ~l~~~~~~  257 (337)
                      |+++++..
T Consensus       317 d~~~g~~~  324 (393)
T d1sq9a_         317 DVKTKERI  324 (393)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCCEE
Confidence            99887543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.6e-25  Score=195.40  Aligned_cols=271  Identities=11%  Similarity=0.144  Sum_probs=179.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee--CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      .+|.++|++++|+|++ +|++|+.|+ +++|+....+.......  .........+..+...++.++     .|++|++|
T Consensus        50 ~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~i~iw  123 (355)
T d1nexb2          50 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS-----RDNTLHVW  123 (355)
T ss_dssp             ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE-----TTSEEEEE
T ss_pred             ECCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccccccccccccccccccceeeeec-----CCCcEEEE
Confidence            4688999999999975 677777666 69999998877655432  233333333334333333331     58999999


Q ss_pred             ECCCCCEEEEEE------------------------cCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCC
Q 019672           81 NTTTGTALRELN------------------------FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL  135 (337)
Q Consensus        81 d~~~~~~~~~~~------------------------~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~  135 (337)
                      |+.++..+....                        +...+.....+++.++.+. |+.+++||+++++.+........ 
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-  202 (355)
T d1nexb2         124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-  202 (355)
T ss_dssp             ECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-
T ss_pred             EccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc-
Confidence            998765443221                        1123444555666666666 88999999999988877754433 


Q ss_pred             ceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-----ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee
Q 019672          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-----CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  210 (337)
Q Consensus       136 ~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~  210 (337)
                       ...+..+++++.++++++  .|+.|++||+.++...     |..+|.++++++  ++|++|+.||+ |++||+++++..
T Consensus       203 -~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~~~  276 (355)
T d1nexb2         203 -RIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYSRK  276 (355)
T ss_dssp             -CEEEEEEETTTTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCCEE
T ss_pred             -ccccccccccceeeeccc--ccceEEeeecccccccccccccccccccccccc--ceeeeeecccc-ccccccccccee
Confidence             455666667778888877  5899999999987654     348899999975  69999999997 699999988776


Q ss_pred             EeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeec
Q 019672          211 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  290 (337)
Q Consensus       211 ~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  290 (337)
                      .....   ........|+++++   +|++|+ ||+|+|||+++++....          .+......+++.+        
T Consensus       277 ~~~~~---~~~~~~~~~~~~~~---~l~~g~-d~~i~vwd~~tg~~~~~----------~~~~~~~~V~~v~--------  331 (355)
T d1nexb2         277 FSYHH---TNLSAITTFYVSDN---ILVSGS-ENQFNIYNLRSGKLVHA----------NILKDADQIWSVN--------  331 (355)
T ss_dssp             EEEEC---TTCCCCCEEEECSS---EEEEEE-TTEEEEEETTTCCBCCS----------CTTTTCSEEEEEE--------
T ss_pred             ccccc---CCceEEEEEcCCCC---EEEEEe-CCEEEEEECCCCCEEEE----------EecCCCCCEEEEE--------
Confidence            54422   22222346778887   666664 89999999987654321          1111112233322        


Q ss_pred             cCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          291 FPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       291 ~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                        +.++ ..+++++.||++++|.+|
T Consensus       332 --~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         332 --FKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             --EETT-EEEEEEESSSCEEEEEEE
T ss_pred             --EcCC-eEEEEEECCCcEEEEEEe
Confidence              2222 456678889999888776

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.1e-25  Score=202.97  Aligned_cols=237  Identities=10%  Similarity=0.076  Sum_probs=169.9

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--EEEEE-cCCceeEEEEcCCe--EEEEE-CCeEEEEEC
Q 019672           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDA  120 (337)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~~~~~-~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~  120 (337)
                      .++.++++.++.+.+++++       .|+.|+|||..+++.  +..+. |..+|.+++|+|+.  ++.++ |++|+|||+
T Consensus         8 ~pIt~~~~s~dg~~la~~~-------~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICP-------NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             SCCCEEEECTTSSEEEEEC-------SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEe-------CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            4567777777777777654       389999999988763  44554 45689999998654  55455 889999999


Q ss_pred             CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc---------ccCceEEEEeCCCCCEEEE
Q 019672          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH---------CEAPLAAIVLSSNGMYIAT  191 (337)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~---------~~~~i~~~~~s~dg~~lat  191 (337)
                      .++.....+....+...+.++.++|++..+++++  .|+.|++|++......         +...|.+++|+|+|++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeec--ccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            8776555544334445678888888999999887  5899999988654321         3378999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCc------------------eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          192 ASEQGTIIRVFLVSEAT------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       192 ~s~dg~~i~vwd~~~~~------------------~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |+.||+ |++||.....                  .+.+.  ..+...|++++|+|+|+   +|++++.|++|++||+..
T Consensus       159 ~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~---~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         159 GSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGS---RVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSS---EEEEEETTTEEEEEEGGG
T ss_pred             cccCcE-EEEEeeccCccccccccccccccccceeeeeec--cCccCcEEEEEeecccc---cccccccCCcceEEeeec
Confidence            999998 6999986543                  22222  22345699999999999   999999999999999876


Q ss_pred             CcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCCC
Q 019672          254 AINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  320 (337)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~~  320 (337)
                      ......      +.....|     +          ..+.+.++ ..+++++.|+.+++|.++.....
T Consensus       233 ~~~~~~------~~~~~~~-----v----------~s~~fs~d-~~~la~g~d~~~~~~~~~~~~~~  277 (371)
T d1k8kc_         233 KMAVAT------LASETLP-----L----------LAVTFITE-SSLVAAGHDCFPVLFTYDSAAGK  277 (371)
T ss_dssp             TTEEEE------EECSSCC-----E----------EEEEEEET-TEEEEEETTSSCEEEEEETTTTE
T ss_pred             ccceee------eeccccc-----c----------eeeeecCC-CCEEEEEcCCceEEEEeeCCCce
Confidence            543211      0000001     1          11222333 46777778999999998876544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.2e-26  Score=198.00  Aligned_cols=279  Identities=11%  Similarity=0.127  Sum_probs=179.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEE---E-E-EeeCCEEEEEEccCCCEEEEEeCCCCCCCCCce
Q 019672            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC---Y-E-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (337)
Q Consensus         3 ~~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (337)
                      .++|++.|++++|+|++++||+|+.|+ ++|||++++...   . . .+...+..+++.++.+.++++++      .|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~------~d~~   80 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT------VQGE   80 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE------TTSC
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc------cccc
Confidence            468999999999999999999999877 699998765332   1 1 12355666676666555555544      5999


Q ss_pred             EEEEECCCCCEEEEEEcCC-ce--eE-EEEcCCeEEEEE-CCeEEEEECCCCeee----eeecCCCC--CceEEEEeeCC
Q 019672           77 LCLFNTTTGTALRELNFLT-SI--LA-VRLNKKRLVIVL-REKTYIYDANTLAIL----DTIDTVPN--LKGLCAFSPSL  145 (337)
Q Consensus        77 v~iwd~~~~~~~~~~~~~~-~v--~~-i~~~~~~~~v~~-d~~i~i~d~~~~~~~----~~~~~~~~--~~~~~~~~~~~  145 (337)
                      |++|+...+.......... ..  .. .......++.+. ++.+++||++.....    ........  ......+..  
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  158 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT--  158 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE--
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec--
Confidence            9999999887766654433 21  22 222445555555 889999998643222    11211111  112233333  


Q ss_pred             CccEEEEcCCCCccEEEEEEccCCccccc--------CceEEEEe-CCCCCEEEEEeCCCcEEEEEEcCCCceeEe----
Q 019672          146 NACFLAVPASTTKGSVLVYNVMELHSHCE--------APLAAIVL-SSNGMYIATASEQGTIIRVFLVSEATKSYS----  212 (337)
Q Consensus       146 ~~~~la~~~~~~dg~v~i~d~~~~~~~~~--------~~i~~~~~-s~dg~~lat~s~dg~~i~vwd~~~~~~~~~----  212 (337)
                      ....+++++  .||.|++||+........        ..+.+.++ ++++..+++++.||. +.+|+.........    
T Consensus       159 ~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         159 NSSRLIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             CSSEEEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTCTTC
T ss_pred             cCCceeeec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCe-EEEEEecCCcceeecccc
Confidence            344666666  489999999987654321        44555554 457889999999998 58999865432111    


Q ss_pred             -----ec----cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeeccccc
Q 019672          213 -----FR----RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  283 (337)
Q Consensus       213 -----~~----~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  283 (337)
                           .+    ...+...|++|+|+|+++   +||+|+.||+|+|||+++.+....       +...-+..         
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~---~lasg~~Dg~v~vWD~~~~~~l~~-------~~~~~~~~---------  296 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKKIKN-------FAKFNEDS---------  296 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEE-------CCCCSSSE---------
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCcc---EEEEECCCCEEEEEECCCCcEEEE-------ecCCCCCE---------
Confidence                 00    112234589999999999   999999999999999987543221       00000000         


Q ss_pred             ceeeeeccCCCcccCEEEEEEeCCcEEEEEEecC
Q 019672          284 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  317 (337)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~  317 (337)
                            .+.+.++++.++++++|+.+++|....+
T Consensus       297 ------~~~~s~~~~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         297 ------VVKIACSDNILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             ------EEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred             ------EEEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence                  0111334578999999999888866443

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-24  Score=190.39  Aligned_cols=229  Identities=12%  Similarity=0.172  Sum_probs=168.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCC--E-------------------EEE---------
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--F-------------------SIV---------   52 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~--~-------------------~~~---------   52 (337)
                      .+|..+|++++|+|+  +|++|+.++ +++|+..............  +                   .+.         
T Consensus        54 ~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  131 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  131 (342)
T ss_dssp             CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccccee
Confidence            467889999999985  888888877 5999987765433221110  0                   000         


Q ss_pred             ----------EEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC-CceeEEEEcCCeEEEEE-CCeEEEEEC
Q 019672           53 ----------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDA  120 (337)
Q Consensus        53 ----------~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~v~~-d~~i~i~d~  120 (337)
                                ........++. +      ..|+.|++||.+..+.+..+..+ ..+..+.+++..++++. |+.|++||+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-~------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~  204 (342)
T d2ovrb2         132 VLMGHVAAVRCVQYDGRRVVS-G------AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV  204 (342)
T ss_dssp             EEECCSSCEEEEEECSSCEEE-E------ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEET
T ss_pred             eeecccccceeeccccceeee-e------cCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeec
Confidence                      00111112222 2      25899999999988888777544 36777788888887777 899999999


Q ss_pred             CCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCCCCEEEEE
Q 019672          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSNGMYIATA  192 (337)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~dg~~lat~  192 (337)
                      +.++.+..+..+..  .+.+++++++  ++++++  .||.|++||+...+..        +...+.++++++  +++++|
T Consensus       205 ~~~~~~~~~~~~~~--~v~~~~~~~~--~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~  276 (342)
T d2ovrb2         205 ETGNCIHTLTGHQS--LTSGMELKDN--ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITS  276 (342)
T ss_dssp             TTCCEEEEECCCCS--CEEEEEEETT--EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEE
T ss_pred             ccceeeeEeccccc--ceeEEecCCC--EEEEEc--CCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEE
Confidence            99988888765543  4667777654  888877  5999999999876543        225677777654  699999


Q ss_pred             eCCCcEEEEEEcCCCceeEeecc---CCcceeEEEEEeecCCCcccEEEEEeCCCc----EEEEecCC
Q 019672          193 SEQGTIIRVFLVSEATKSYSFRR---GTYPSTIFSLSFGQSMQFQDILVATSSSGS----LHVFSPGF  253 (337)
Q Consensus       193 s~dg~~i~vwd~~~~~~~~~~~~---~~~~~~i~~l~fs~dg~~~~~las~s~dg~----v~iw~l~~  253 (337)
                      +.||+ |+|||+++++.++++..   +.+...|++++|+|++.   +||+|+.||+    |++||++.
T Consensus       277 s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~---~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE---EEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC---EEEEEeCCCCCeeEEEEEeCCC
Confidence            99997 69999999999887742   23456799999999998   9999999996    99999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6e-24  Score=183.97  Aligned_cols=226  Identities=15%  Similarity=0.172  Sum_probs=169.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~   83 (337)
                      ..|...|.+++|++++.++.++.++.+++|++.+.+     .......+.+..+ ...++++.       ++.+.+|+..
T Consensus        43 ~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~  109 (287)
T d1pgua2          43 QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-----FGSQPKVASANND-GFTAVLTN-------DDDLLILQSF  109 (287)
T ss_dssp             CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSS-SEEEEEET-------TSEEEEEETT
T ss_pred             CCCCCCEEEEEecCCCeEEEEeeccccccccccccc-----cccceeeeeeccC-CceEEEee-------cccceeeecc
Confidence            367789999999988776555556668999875422     1122333444333 33333333       6789999999


Q ss_pred             CCCEEEEEEcCCceeEEEEcCCeEEEEE-C-CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEE
Q 019672           84 TGTALRELNFLTSILAVRLNKKRLVIVL-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (337)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v  161 (337)
                      +++.+..+....++.++..+++.++++. + +.+++|++...+....+.. .....+.+++++|++.+|++++  .||.|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~--~dg~i  186 (287)
T d1pgua2         110 TGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGD--VMGKI  186 (287)
T ss_dssp             TCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEE--TTSCE
T ss_pred             ceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCcccccccc--ccccc
Confidence            9999999998888888888888888877 3 4799999987766555443 2334577888889999999887  59999


Q ss_pred             EEEEccCCccc------ccCceEEEEeCCC----------CCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          162 LVYNVMELHSH------CEAPLAAIVLSSN----------GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       162 ~i~d~~~~~~~------~~~~i~~~~~s~d----------g~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      ++||+.+....      |..+|++++|+|+          +.+||+|+.||+ |+|||++++........+ |...|+++
T Consensus       187 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~~~-h~~~V~~v  264 (287)
T d1pgua2         187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKALNA-HKDGVNNL  264 (287)
T ss_dssp             EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEETTS-STTCEEEE
T ss_pred             cceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEeCC-CCCCeEEE
Confidence            99999877542      4588999999875          468999999998 699999875544333333 46679999


Q ss_pred             EeecCCCcccEEEEEeCCCcEEEEec
Q 019672          226 SFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       226 ~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      +|+|++    .|++++.|++|+||++
T Consensus       265 ~~~~~~----~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         265 LWETPS----TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEETT----EEEEEETTSCEEEEEE
T ss_pred             EECCCC----EEEEEECCCeEEEEEE
Confidence            999987    5889999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=1.6e-23  Score=185.98  Aligned_cols=276  Identities=14%  Similarity=0.049  Sum_probs=190.1

Q ss_pred             EEEEEcC-CCCEEEEEcCCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE
Q 019672           11 FFVSFNQ-DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (337)
Q Consensus        11 ~~~~fs~-dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~   89 (337)
                      ..-.||| ||+++|+++.+.+.+||+++++.+...+...+..+.+.++++.+++++..     ..+.|++||.++++...
T Consensus         6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~-----~g~~v~v~d~~~~~~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR-----EGDFLGIYDYRTGKAEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET-----TEEEEEEEETTTCCEEE
T ss_pred             hcccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcC-----CCCEEEEEECCCCcEEE
Confidence            3468999 99999999988899999998877665555667777888888888777752     23589999999998777


Q ss_pred             EEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC--------CCCc
Q 019672           90 ELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--------STTK  158 (337)
Q Consensus        90 ~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~--------~~~d  158 (337)
                      ...+...|.++.|+++.  ++++. ++.+++|++.+++....+..+..  ...+++++|++.+|+++.        ...+
T Consensus        81 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~la~~~~~~~~~~~~~~~  158 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA--MITDFTISDNSRFIAYGFPLKHGETDGYVM  158 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS--CCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccc--cccchhhccceeeeeeeccccccceeeccc
Confidence            66777799999998875  44444 78999999999887777665443  334456667788888642        1146


Q ss_pred             cEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee-------Eeecc------------
Q 019672          159 GSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS-------YSFRR------------  215 (337)
Q Consensus       159 g~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~-------~~~~~------------  215 (337)
                      +.+++||+.+++...    ...+..++|+|||++|++++.|+. +++||.......       ..+..            
T Consensus       159 ~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (360)
T d1k32a3         159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP  237 (360)
T ss_dssp             EEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred             cceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCc-eEcccccccceeeccccceEEEecccCccccceECC
Confidence            789999999876532    377899999999999999999997 589987543221       10000            


Q ss_pred             ----------------------CCcceeEEEEEeec----------CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcc
Q 019672          216 ----------------------GTYPSTIFSLSFGQ----------SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT  263 (337)
Q Consensus       216 ----------------------~~~~~~i~~l~fs~----------dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~  263 (337)
                                            .........+...+          .+....++++++.++.|++||+++.+..      
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------  311 (360)
T d1k32a3         238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------  311 (360)
T ss_dssp             GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE------
T ss_pred             CcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE------
Confidence                                  00001122222222          2221114566777888999998754321      


Q ss_pred             cccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcEEEEEEecCCC
Q 019672          264 SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  319 (337)
Q Consensus       264 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~~~~  319 (337)
                       .+.     .   .          +..+.+.+++++|++++.||.+++|+++.-+.
T Consensus       312 -~~~-----~---~----------v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         312 -EVK-----N---N----------LTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             -EEE-----E---E----------EEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             -Eec-----C---C----------cCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence             000     0   0          12334577889999999999999998854443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3e-23  Score=188.37  Aligned_cols=246  Identities=12%  Similarity=0.140  Sum_probs=151.0

Q ss_pred             EEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE-------EEEEEcCCceeE------EEEcCC-eEEE--EE-C
Q 019672           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-------LRELNFLTSILA------VRLNKK-RLVI--VL-R  112 (337)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~v~~------i~~~~~-~~~v--~~-d  112 (337)
                      .+.++.+.++.++.+++       |++|+|||.++.+.       .....+...+..      +..++. ..++  +. |
T Consensus        16 ~I~~v~~~~~~l~S~S~-------D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          16 DIFSVSACNSFTVSCSG-------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             CEEEEEECSSEEEEEET-------TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             ccEEEEEeCCEEEEEEC-------CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            34444456777766654       99999999876532       222222222211      111221 2222  22 8


Q ss_pred             CeEEEEECCCCeeeee-----e---cCCCCCce--EEEEeeCC---CccEEEEcCCCCccEEEEEEccCCccc-------
Q 019672          113 EKTYIYDANTLAILDT-----I---DTVPNLKG--LCAFSPSL---NACFLAVPASTTKGSVLVYNVMELHSH-------  172 (337)
Q Consensus       113 ~~i~i~d~~~~~~~~~-----~---~~~~~~~~--~~~~~~~~---~~~~la~~~~~~dg~v~i~d~~~~~~~-------  172 (337)
                      +.|++|++........     .   .....+..  ..++.+.+   ...++++++  .||.+++||+......       
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc--CCCcEEEEEeecCCcccceeeee
Confidence            9999999754321111     1   11111122  23444332   245677766  4999999998532110       


Q ss_pred             ----------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC----CcceeEEEEEeecCCC
Q 019672          173 ----------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG----TYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       173 ----------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~----~~~~~i~~l~fs~dg~  232 (337)
                                      +...+++++|+|+| +||+|+.||+ |+|||+.+++.+..+...    .|...|++|+|||||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  244 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS  244 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEcccccccc
Confidence                            11558899999998 8999999998 699999999988766432    2456799999999999


Q ss_pred             cccEEEEEeCCCc---EEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEeCCcE
Q 019672          233 FQDILVATSSSGS---LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYF  309 (337)
Q Consensus       233 ~~~~las~s~dg~---v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~dg~~  309 (337)
                         +|++|+.|++   |+|||++++..........        ...........|...+..+.+.++++.|++++.||+|
T Consensus       245 ---~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~--------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         245 ---LLAIAHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             ---EEEEEEEETTEEEEEEEETTTCCEEEEECBC----------------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ---eeeeecCCCCcceeeecccccceeeeeecccc--------ccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence               9999999975   8999998765432110000        0001111122233334556667888999999999999


Q ss_pred             EEEEEecC
Q 019672          310 VEYIFSIN  317 (337)
Q Consensus       310 ~~~~~~~~  317 (337)
                      ++|++++.
T Consensus       314 ~vWd~~~g  321 (393)
T d1sq9a_         314 RFWDVKTK  321 (393)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            99988543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-22  Score=172.05  Aligned_cols=222  Identities=11%  Similarity=0.234  Sum_probs=164.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEEC
Q 019672            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (337)
Q Consensus         4 ~~~~~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~   82 (337)
                      .+|..+|++++|  ++++|++|+.|+ +++|++..+......................++....       ++.+++||.
T Consensus        52 ~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  122 (293)
T d1p22a2          52 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK-------DRSIAVWDM  122 (293)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET-------TSCEEEEEC
T ss_pred             ecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeeccc-------ccceeEeec
Confidence            468899999987  567999998887 5999999987766654444444445555666655544       789999999


Q ss_pred             CCCCEEEE---E-EcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCC
Q 019672           83 TTGTALRE---L-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (337)
Q Consensus        83 ~~~~~~~~---~-~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  157 (337)
                      .+......   + .+...+..+.+.++....+. |+.+++||+++++.+..+..+..  .+..+++++  .++++++  .
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~--~~l~~~~--~  196 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRD--RLVVSGS--S  196 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEET--TEEEEEE--T
T ss_pred             cccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc--ccccccCCC--CeEEEec--C
Confidence            87654332   2 23447888888888887776 88999999999998888865443  455666654  3677776  5


Q ss_pred             ccEEEEEEccCCccccc-----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC---------ceeEeeccCCcceeEE
Q 019672          158 KGSVLVYNVMELHSHCE-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA---------TKSYSFRRGTYPSTIF  223 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~-----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~---------~~~~~~~~~~~~~~i~  223 (337)
                      ||.|++||+++......     ..+.+  +++++.+|++|+.||. |++||+.++         ..+..+. + |...|+
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-H~~~V~  271 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLV-E-HSGRVF  271 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEEC-C-CSSCCC
T ss_pred             CCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEec-C-CCCCEE
Confidence            99999999998776533     44554  5677889999999998 699997543         3445553 2 456789


Q ss_pred             EEEeecCCCcccEEEEEeCCCcEEEEe
Q 019672          224 SLSFGQSMQFQDILVATSSSGSLHVFS  250 (337)
Q Consensus       224 ~l~fs~dg~~~~~las~s~dg~v~iw~  250 (337)
                      +|+|+  ++   +|+++|.||+|+|||
T Consensus       272 ~v~~d--~~---~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         272 RLQFD--EF---QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEC--SS---CEEECCSSSEEEEEC
T ss_pred             EEEEc--CC---EEEEEecCCEEEEeC
Confidence            99884  56   899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1e-21  Score=171.53  Aligned_cols=231  Identities=12%  Similarity=0.040  Sum_probs=155.8

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            5 SSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg-~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      .+..+|++++|+|++ .+|++|+.++ +++|+............   ..............++..+       .++++++
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  126 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS-------WDGLIEV  126 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE-------TTSEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccc-------cccccce
Confidence            478899999999875 4688888877 69999988765544322   1222333444556655554       3899999


Q ss_pred             EECCCCCEEEEEE--c-------CCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeee--cCCCCCceEEEEeeCCCc
Q 019672           80 FNTTTGTALRELN--F-------LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNA  147 (337)
Q Consensus        80 wd~~~~~~~~~~~--~-------~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  147 (337)
                      ||++++.......  .       ......+....+.++.+. |+.|++||++..+.....  ................++
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            9986544322221  1       112334555666677666 899999999766443222  111111122222223345


Q ss_pred             cEEEEcCCCCccEEEEEEccCCccc--------------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          148 CFLAVPASTTKGSVLVYNVMELHSH--------------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       148 ~~la~~~~~~dg~v~i~d~~~~~~~--------------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      ..+++++  .||.+.+|+.......                    +..+|++++|+|++++||||+.||+ |+|||++++
T Consensus       207 ~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~  283 (342)
T d1yfqa_         207 EGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR  283 (342)
T ss_dssp             CEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT
T ss_pred             CEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCC
Confidence            5666666  4899999987643211                    1157899999999999999999998 699999999


Q ss_pred             ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          208 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       208 ~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                      +++.++... +.  +..++|+|+++   +|++++.|+++++|..
T Consensus       284 ~~l~~~~~~-~~--~~~~~~s~~~~---~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         284 KKIKNFAKF-NE--DSVVKIACSDN---ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEECCCC-SS--SEEEEEEECSS---EEEEEEECTHHHHCSS
T ss_pred             cEEEEecCC-CC--CEEEEEEeCCC---EEEEEEcCCcEEEeee
Confidence            999888543 22  34578899998   9999999999988864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=3.9e-19  Score=153.43  Aligned_cols=232  Identities=12%  Similarity=0.086  Sum_probs=175.0

Q ss_pred             CCeEEEEEcCCCCEEE-EEcCC-ceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCC
Q 019672            8 YPVFFVSFNQDNSGFA-LSTKD-GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la-~g~~~-g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~   84 (337)
                      .....++|+|||++|+ ++..+ .+++||+.+++.+..... .....+.+..+...+++.+.      .++.+.+||..+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  105 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccccc------ccceeeeccccc
Confidence            4568899999999875 55444 479999999988776644 33445566666676666554      488999999999


Q ss_pred             CCEEEEEEcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccE
Q 019672           85 GTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (337)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~  160 (337)
                      ++....+........+.++++.  +++..  +..+.+|+..+.+.+..+.....   ...+..++++..+++++. ..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~  181 (301)
T d1l0qa2         106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANF-DSMS  181 (301)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEET-TTTE
T ss_pred             ceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC---ceEEEeeccccceeeecc-cccc
Confidence            9999999888888888887764  33444  67899999999988887765433   344455666666666654 4678


Q ss_pred             EEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCC---CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          161 VLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       161 v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      +.+|+.........    ..+..++|+++|+.++.++.+   ++ |++||+.+++.+.++..+   ..+.+++|||||+ 
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~~---~~~~~va~spdg~-  256 (301)
T d1l0qa2         182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDGK-  256 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTSS-
T ss_pred             cccccccceeeeecccccCCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcCC---CCEEEEEEeCCCC-
Confidence            88888876654332    567889999999988766543   44 699999999988877543   3478999999999 


Q ss_pred             ccEE-EEEeCCCcEEEEecCCCcc
Q 019672          234 QDIL-VATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       234 ~~~l-as~s~dg~v~iw~l~~~~~  256 (337)
                        +| ++++.+++|+|||+++.+.
T Consensus       257 --~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         257 --KVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             --EEEEEETTTTEEEEEETTTTEE
T ss_pred             --EEEEEECCCCeEEEEECCCCeE
Confidence              76 6788899999999987654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=4.2e-21  Score=170.18  Aligned_cols=232  Identities=12%  Similarity=0.121  Sum_probs=165.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCc--eEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            5 SSSYPVFFVSFNQDNSGFALST-KDG--FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~-~~g--~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ++...|++++|+|||++|++++ +++  +++||.++++..... +...+..+.+.++++.++..+.       ++.+++|
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------~~~~~~~  112 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-------RFEIMTV  112 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecc-------ccccccc
Confidence            5778999999999999987654 443  599999988765432 3355677788888888887765       8999999


Q ss_pred             ECCCCCEEEEEEcCC-ceeEEEEcCCeEEEE--E-----------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           81 NTTTGTALRELNFLT-SILAVRLNKKRLVIV--L-----------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        81 d~~~~~~~~~~~~~~-~v~~i~~~~~~~~v~--~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      +..+++....+..+. .+.+++|++++..++  .           ++.+++||+.+++.......   ........++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~---~~~~~~~~~spd  189 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE---NSHDYAPAFDAD  189 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS---SSBEEEEEECTT
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc---ccccccccccCC
Confidence            999999887776554 678899988754333  2           23689999998866544332   223455667788


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCccc------------c------------------------------------cCceE
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSH------------C------------------------------------EAPLA  178 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~------------~------------------------------------~~~i~  178 (337)
                      +..|++.+  .++.+.+||.......            +                                    .+...
T Consensus       190 g~~l~~~s--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         190 SKNLYYLS--YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             SCEEEEEE--SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCEEEEEe--CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            88999887  4788888885432100            0                                    01223


Q ss_pred             EEEeCCCCC-------------EEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          179 AIVLSSNGM-------------YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       179 ~~~~s~dg~-------------~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      .+...+++.             ++++++.++. |++||+.+++.. .+     ...|.+++|||||+   +|++++.||+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~-----~~~v~~~~~SpDG~---~l~~~~~Dg~  337 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EV-----KNNLTDLRLSADRK---TVMVRKDDGK  337 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EE-----EEEEEEEEECTTSC---EEEEEETTSC
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Ee-----cCCcCEEEECCCCC---EEEEEECCCe
Confidence            344443332             3455556776 689999887642 22     24589999999999   9999999999


Q ss_pred             EEEEecCCCcccC
Q 019672          246 LHVFSPGFAINQR  258 (337)
Q Consensus       246 v~iw~l~~~~~~~  258 (337)
                      |++||++++..++
T Consensus       338 i~v~d~~~~~~~~  350 (360)
T d1k32a3         338 IYTFPLEKPEDER  350 (360)
T ss_dssp             EEEEESSCTTSCE
T ss_pred             EEEEECCCCCcce
Confidence            9999998876644

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=2.3e-18  Score=148.45  Aligned_cols=256  Identities=11%  Similarity=0.089  Sum_probs=183.8

Q ss_pred             EEEcC-CceEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEE
Q 019672           23 ALSTK-DGFKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAV  100 (337)
Q Consensus        23 a~g~~-~g~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i  100 (337)
                      ++++. +.+.|||+++++.+.....+ ....+.+.++++.+++.+.      .+++|++||+++++.+.++..+..+..+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~------~~~~i~v~d~~t~~~~~~~~~~~~~~~~   79 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSSPQGV   79 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCceeeeeecccccccc
Confidence            34544 45899999999988776543 3455677777787765554      4789999999999999999888888889


Q ss_pred             EEcCCe--EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc--
Q 019672          101 RLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--  174 (337)
Q Consensus       101 ~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~--  174 (337)
                      .++++.  +++..  +..+.+|+..+++....+.....   ...+.+++++..++..+. .++.+.+|+..+......  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNN-GDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccccceeeecccccceeeeecccccc---ceEEEeecCCCeeeeeec-cccceeeeeccccceeeecc
Confidence            997654  44444  66899999999988888765433   345566677777765554 588999999988775533  


Q ss_pred             --CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEe---CCCcEEEE
Q 019672          175 --APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVF  249 (337)
Q Consensus       175 --~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s---~dg~v~iw  249 (337)
                        ..+..++++|+++.+++++.+...+.+|+....+....+..   ...+..++|++++.   .+++++   .+++|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~---~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT---KAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSS---EEEEEEECSSCCEEEEE
T ss_pred             cCCCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeecccccc---ccccccccceeeeeeee
Confidence              66889999999999999988766677888887776665543   23467899999999   666553   34689999


Q ss_pred             ecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEE-EEEeCCcEEEEEEec
Q 019672          250 SPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS-VITYNGYFVEYIFSI  316 (337)
Q Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~~~~~~~~~  316 (337)
                      |+.+.+....           ++.. ...          ..+++.+++++|+ +++.||.|++|++.+
T Consensus       230 D~~t~~~~~~-----------~~~~-~~~----------~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         230 DTGTNKITAR-----------IPVG-PDP----------AGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             ETTTTEEEEE-----------EECC-SSE----------EEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ecCCCeEEEE-----------EcCC-CCE----------EEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            9976543210           0000 001          1233466778885 556689999997643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=9.6e-18  Score=153.37  Aligned_cols=279  Identities=15%  Similarity=0.051  Sum_probs=175.9

Q ss_pred             EcCCCC--EEEEEcCCc-eEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEE-
Q 019672           15 FNQDNS--GFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-   89 (337)
Q Consensus        15 fs~dg~--~la~g~~~g-~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~-   89 (337)
                      ++.|.+  ++++..+++ ++|||+.+++++..... ..+..+.+.+++..++..+       .|++|++||+.+++... 
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-------~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-------RDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-------CCCCEEEEEccCCceeEE
Confidence            445543  446666666 69999999999877754 3455677888888776554       48999999999988554 


Q ss_pred             -EEEcCCceeEEEE----cC--CeEEEEE--CCeEEEEECCCCeeeeeecCCCCC---------ceEEEEeeCCCccEEE
Q 019672           90 -ELNFLTSILAVRL----NK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNL---------KGLCAFSPSLNACFLA  151 (337)
Q Consensus        90 -~~~~~~~v~~i~~----~~--~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~la  151 (337)
                       ++........+.+    ++  +.++++.  ++.+.+||..+++.+..+..+...         .....+..++++..++
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence             4444333444443    44  3455544  889999999998777665432211         1123334445555555


Q ss_pred             EcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccC---------
Q 019672          152 VPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG---------  216 (337)
Q Consensus       152 ~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~---------  216 (337)
                      .... ..+.+.+++.......      +...+..++|+|+|++++++..+...+.+++..+++.+.....+         
T Consensus       179 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         179 VNVK-ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEET-TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EecC-CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence            4443 3677777776655432      22678899999999999998877766788888877754322100         


Q ss_pred             -------------------------------------------CcceeEEEEEeecCCCcccEEEE-------EeCCCcE
Q 019672          217 -------------------------------------------TYPSTIFSLSFGQSMQFQDILVA-------TSSSGSL  246 (337)
Q Consensus       217 -------------------------------------------~~~~~i~~l~fs~dg~~~~~las-------~s~dg~v  246 (337)
                                                                 .+...+.+++||||++   +|++       ++.+++|
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~---~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---HLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS---EEEECCTTCSSHHHHTCE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc---eEEEeecCCCCcccCCEE
Confidence                                                       0122367799999999   8884       5668899


Q ss_pred             EEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEE-----eCCcEEEEEEec
Q 019672          247 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-----YNGYFVEYIFSI  316 (337)
Q Consensus       247 ~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~~~~~~~~~  316 (337)
                      +|||+++.+...........  ..+++....+          .++.+.++++++++.+     .+|.|.+|+.++
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~--~~~~~~~~rv----------~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEW--ADLGEGAKRV----------VQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHH--HCCCSSCCCE----------EEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEECCCCCcCeEEeccchh--cccCCCCccE----------EEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            99999876643210000000  0111111222          3344577888887643     588899986543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=1.2e-17  Score=152.61  Aligned_cols=238  Identities=10%  Similarity=0.038  Sum_probs=149.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEE--EEee-CCEEE--EEE--ccCCCEEEEEeCCCCCCCCCceEEE
Q 019672            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAV-GAFSI--VEM--LYSSSLLAIVGAGEQPSLSPRRLCL   79 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~--~~~~-~~~~~--~~~--~~~~~~~~~~~~g~~~~~~d~~v~i   79 (337)
                      ..+..++|||||++|++++.++ +++||+++++...  .... .+...  ...  .++++.++..+.      .++.+++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------~~~~v~i  135 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAI  135 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec------CCCeEEE
Confidence            4689999999999999887765 7999999987543  3221 11121  222  235566655543      4889999


Q ss_pred             EECCCCCEEEEEEcC--------------------------------------------------------CceeEEEEc
Q 019672           80 FNTTTGTALRELNFL--------------------------------------------------------TSILAVRLN  103 (337)
Q Consensus        80 wd~~~~~~~~~~~~~--------------------------------------------------------~~v~~i~~~  103 (337)
                      ||.++++++..+..+                                                        ..+..+.++
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            999888765443211                                                        111233333


Q ss_pred             CC--eEEEEE--CCeEEEEECCCCeeeeeecCCC--CCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc-------
Q 019672          104 KK--RLVIVL--REKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-------  170 (337)
Q Consensus       104 ~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~-------  170 (337)
                      ++  ++.++.  ++.+.+++..+++.+..+....  ++.....+.....+...+.... .++.+.+|+.....       
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT-TTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC-CCceEEEeeccccccccccce
Confidence            32  233333  4467777777776665553322  1222223333333444444443 48889998875432       


Q ss_pred             c-----cccCceEEEEeCCCCCEEEE-------EeCCCcEEEEEEcCCCceeEeecc-------CCcceeEEEEEeecCC
Q 019672          171 S-----HCEAPLAAIVLSSNGMYIAT-------ASEQGTIIRVFLVSEATKSYSFRR-------GTYPSTIFSLSFGQSM  231 (337)
Q Consensus       171 ~-----~~~~~i~~~~~s~dg~~lat-------~s~dg~~i~vwd~~~~~~~~~~~~-------~~~~~~i~~l~fs~dg  231 (337)
                      .     .|...+..++|+|||++|++       ++.|++ |+|||+++++...++..       ..+...|.+++|||||
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            1     12367899999999999994       556777 69999999987665421       1223358899999999


Q ss_pred             CcccEEE-EE----eCCCcEEEEecCCCcc
Q 019672          232 QFQDILV-AT----SSSGSLHVFSPGFAIN  256 (337)
Q Consensus       232 ~~~~~la-s~----s~dg~v~iw~l~~~~~  256 (337)
                      +   +++ ++    +.+|+|+|||.++.+.
T Consensus       374 k---~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         374 D---EVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             S---EEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             C---EEEEEEecCCCCCCeEEEEECCCCeE
Confidence            8   664 32    4678899999988754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=1.3e-16  Score=146.25  Aligned_cols=288  Identities=14%  Similarity=0.025  Sum_probs=183.5

Q ss_pred             cCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeC-CEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE--EEEE
Q 019672           16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LREL   91 (337)
Q Consensus        16 s~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~--~~~~   91 (337)
                      +++.-++++.++++ +.|||.++++++.....+ .+..+.+.+++..++..+       .|++|++||+.+++.  +.++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s-------~dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEc-------CCCCEEEEEeeCCCceEEEEE
Confidence            33333346666665 699999999998877554 456677888888887654       389999999988764  4455


Q ss_pred             EcCCceeEEEE----cCC--eEEEEE--CCeEEEEECCCCeeeeeecCCC---------CCceEEEEeeCCCccEEEEcC
Q 019672           92 NFLTSILAVRL----NKK--RLVIVL--REKTYIYDANTLAILDTIDTVP---------NLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        92 ~~~~~v~~i~~----~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~la~~~  154 (337)
                      ........+.+    +++  .+++..  ++.+++||..+++.+..+..+.         ......++..++++..++++.
T Consensus       102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence            54444444544    333  454444  8899999999998877664321         112234566667777766555


Q ss_pred             CCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCC-----------
Q 019672          155 STTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------  217 (337)
Q Consensus       155 ~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~-----------  217 (337)
                      . .++.|.+||..+.+...      ...+..++|+|||+++++++.++..+.++|..+++.+..+..+.           
T Consensus       182 ~-~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~  260 (432)
T d1qksa2         182 K-ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  260 (432)
T ss_dssp             T-TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             c-cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccce
Confidence            4 58999999988765332      25678999999999999999888778899998877654332110           


Q ss_pred             -------------------------------cceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccc-
Q 019672          218 -------------------------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS-  265 (337)
Q Consensus       218 -------------------------------~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~-  265 (337)
                                                     +...+....|+|++.   .+++++.+++.++|..............-. 
T Consensus       261 ~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~---~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v  337 (432)
T d1qksa2         261 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---SLFIKTHPNSQYLYVDATLNPEAEISGSVAV  337 (432)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred             ecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCC---eEEEEecCCccceeecccCCCCCCeeeEEEE
Confidence                                           001245566778777   788888888888887654322110000000 


Q ss_pred             cccccc----cccceeecccc------cceeeeeccCCCcccCEEEEEE-----eCCcEEEEEE
Q 019672          266 ILGSIL----PESVNEVLDPA------DHHVLRNAFPAGVKRASVSVIT-----YNGYFVEYIF  314 (337)
Q Consensus       266 ~~~~~~----~~~~~~~w~~~------~~~~~~~~~~~~~~~~~l~~~~-----~dg~~~~~~~  314 (337)
                      +-+..+    .+....+|..+      .+...+.++.+.+++++|++..     .+|.+.+|+-
T Consensus       338 pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         338 FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence            000000    01123455432      2333345667889999997665     4688999843

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=3e-18  Score=150.48  Aligned_cols=231  Identities=7%  Similarity=0.041  Sum_probs=152.8

Q ss_pred             EEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           13 VSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        13 ~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      ++|++++++|++++.++ +.|||+.+++++.....   .....+.+.+++..+.+.+.      .++.|.+||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC------CCCcEEEEeCccCeee
Confidence            47899999999888765 79999999998876653   23445677777777655554      4899999999999998


Q ss_pred             EEEEcCC-------ceeEEEEcCCe--EEEEE-------------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCC
Q 019672           89 RELNFLT-------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        89 ~~~~~~~-------~v~~i~~~~~~--~~v~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (337)
                      .++....       .+..+.+++++  ++++.             +..+.+||..+++....+.....+.....+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            8776543       24567777654  44332             45788888766544332211111111111111111


Q ss_pred             ccEEEEcC--------------------------------------------------------------CCCccEEEEE
Q 019672          147 ACFLAVPA--------------------------------------------------------------STTKGSVLVY  164 (337)
Q Consensus       147 ~~~la~~~--------------------------------------------------------------~~~dg~v~i~  164 (337)
                      +.+++..+                                                              ...++.+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            11111100                                                              0013345556


Q ss_pred             EccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEE
Q 019672          165 NVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  238 (337)
Q Consensus       165 d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~la  238 (337)
                      |+.++...      +...+..+.+++++.+++.+..+ . |++||..+++.+..+..+   ..+.+++|||||+   +|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~d~~~~~~~~~~~~~---~~~~~va~s~DG~---~l~  307 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-LAKYDLKQRKLIKAANLD---HTYYCVAFDKKGD---KLY  307 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-EEEEETTTTEEEEEEECS---SCCCEEEECSSSS---CEE
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-e-EEEEECCCCcEEEEEcCC---CCEEEEEEcCCCC---EEE
Confidence            66554432      12567888999998888887765 4 689999999998877543   2478999999999   999


Q ss_pred             EEeCCCcEEEEecCCCccc
Q 019672          239 ATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       239 s~s~dg~v~iw~l~~~~~~  257 (337)
                      +++.|++|+|||+++.+..
T Consensus       308 v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EESBSSEEEEEETTTTEEE
T ss_pred             EEeCCCcEEEEECccCCEE
Confidence            9999999999999876643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=8.7e-18  Score=146.86  Aligned_cols=238  Identities=10%  Similarity=0.031  Sum_probs=165.2

Q ss_pred             CCCeEEEEEcCCCCEE-EEEcCCc-eEEEeCCCCcEEEEEeeCC-------EEEEEEccCCCEEEEEeCCCC-----CCC
Q 019672            7 SYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAVGA-------FSIVEMLYSSSLLAIVGAGEQ-----PSL   72 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~l-a~g~~~g-~~vw~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~-----~~~   72 (337)
                      ...+.+++|+|||+++ ++++.++ +.+||+.+++.+.....+.       ...+.+.++.+.++.......     ...
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            3457789999999987 4565555 7999999999877654321       113455666666655432110     011


Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeE-EEEECCeEEEEECCCCeeeeeecCCCCCceEEEEeeC-------
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL-VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-------  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~-~v~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------  144 (337)
                      .+..+.+||..+++.+..+.....+..+.+++++. +++.++.+.+||..+++....+......... .+.++       
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  191 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWNQ  191 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCCC
T ss_pred             cccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccc-eecCCcceeecc
Confidence            46789999999999999998888888899988753 3344777899999998877776443221110 00000       


Q ss_pred             ---------------CCccEEEEcCCCCccEEEEEEccCCcccc------cCceEEEEeCCCCCEEEEEeCCCcEEEEEE
Q 019672          145 ---------------LNACFLAVPASTTKGSVLVYNVMELHSHC------EAPLAAIVLSSNGMYIATASEQGTIIRVFL  203 (337)
Q Consensus       145 ---------------~~~~~la~~~~~~dg~v~i~d~~~~~~~~------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd  203 (337)
                                     .+........  .++.+.+||+.++....      ...+..++++|++.+++.++  +. |++||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~d  266 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTA--YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESFD  266 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGG--EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEEE
T ss_pred             ccccceeeeeeeeeeeccceeeecc--cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEEE
Confidence                           0000001111  35678899988776432      26678899999999988764  55 69999


Q ss_pred             cCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          204 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +.+++.+.++..+   ..+.+++|||||+   +|++++.+++|+|||+++.+.
T Consensus       267 ~~~~~~~~~~~~~---~~~~~~~~s~dG~---~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         267 LEKNASIKRVPLP---HSYYSVNVSTDGS---TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             TTTTEEEEEEECS---SCCCEEEECTTSC---EEEEESBSSEEEEEETTTCCE
T ss_pred             CCCCcEEEEEcCC---CCEEEEEECCCCC---EEEEEeCCCcEEEEECCCCcE
Confidence            9999998887533   3578999999999   999999999999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=2.9e-15  Score=133.26  Aligned_cols=243  Identities=9%  Similarity=0.026  Sum_probs=148.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEcC------CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC---CCC
Q 019672            2 SNQSSSYPVFFVSFNQDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ---PSL   72 (337)
Q Consensus         2 ~~~~~~~~v~~~~fs~dg~~la~g~~------~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~   72 (337)
                      +...+..++.+++++|||+.+++...      ..+.+||.++++.+.....+....+.+.+++..++.......   ...
T Consensus        15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             hcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccc
Confidence            45578889999999999999876532      236899999999988876655556788888888877654211   123


Q ss_pred             CCceEEEEECCCCCEEEEEEcCCc-e-------eEEEEcC--CeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTS-I-------LAVRLNK--KRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLC  139 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~-v-------~~i~~~~--~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (337)
                      .++.|.+||..+++.+..+..+.. .       ..+.+++  +.+.+..   ++.+.+|+....+.......+    ...
T Consensus        95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  170 (373)
T d2madh_          95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----TCY  170 (373)
T ss_pred             cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc----eeE
Confidence            578999999999998877655431 1       1222322  2222222   335556665554433332211    111


Q ss_pred             EEeeC-----------------------------------------------CCccEEEEcCCCCccEEEEEEccCCccc
Q 019672          140 AFSPS-----------------------------------------------LNACFLAVPASTTKGSVLVYNVMELHSH  172 (337)
Q Consensus       140 ~~~~~-----------------------------------------------~~~~~la~~~~~~dg~v~i~d~~~~~~~  172 (337)
                      .++++                                               +++.+++. +  .++.+.+|+.......
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~  247 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-V--YSGKILQADISAAGAT  247 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe-c--CCceEEEEEcCCCeEE
Confidence            22222                                               22222221 1  1344444444332211


Q ss_pred             cc-----------------CceEEEEeCCCCCEEEEE----------eCCCcEEEEEEcCCCceeEeeccCCcceeEEEE
Q 019672          173 CE-----------------APLAAIVLSSNGMYIATA----------SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  225 (337)
Q Consensus       173 ~~-----------------~~i~~~~~s~dg~~lat~----------s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l  225 (337)
                      ..                 .....++++|++..++..          ..++. +.+||+.+++.+..+..+   ..+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~~~---~~~~~~  323 (373)
T d2madh_         248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQISLG---HDVDAI  323 (373)
T ss_pred             EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEecCC---CCeeEE
Confidence            00                 123445667776665533          33444 689999999988877533   357899


Q ss_pred             EeecCCCcccE--EEEEeCCCcEEEEecCCCcccC
Q 019672          226 SFGQSMQFQDI--LVATSSSGSLHVFSPGFAINQR  258 (337)
Q Consensus       226 ~fs~dg~~~~~--las~s~dg~v~iw~l~~~~~~~  258 (337)
                      +|||||+   .  +++++.|++|+|||+.+++..+
T Consensus       324 a~spDG~---~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         324 SVAQDGG---PDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EECCCCC---EEEEEEeCCCCeEEEEECCCCCEEE
Confidence            9999998   4  3688999999999999876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=5.2e-16  Score=135.32  Aligned_cols=255  Identities=12%  Similarity=0.055  Sum_probs=165.6

Q ss_pred             CEEEEEcCC-ceEEEeCCCCcEEEEEee----CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC
Q 019672           20 SGFALSTKD-GFKIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        20 ~~la~g~~~-g~~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      ++|++++.+ .++|||+++++.+.....    .....+.+.++++.+++++.      .++.|.+||+.+++.+..+..+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~------~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecC
Confidence            467777764 589999999998877643    23445677777777766554      4899999999999999887654


Q ss_pred             C------ceeEEEEcCCe--EEEEE-------------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           95 T------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        95 ~------~v~~i~~~~~~--~~v~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .      .+..++++++.  ++++.             +..+.+||..+++.+..+.....+   ..+.+++++.+++++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI---TMLAWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC---CCEEECTTSSCEEEE
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCc---eEEEEcCCCCEEEEE
Confidence            3      23456777653  33332             457999999999988888765443   334566788888876


Q ss_pred             CCCCccEEEEEEccCCccccc----CceEEEEeCCCCC------------------------EEEEEeCCCcEEEEEEcC
Q 019672          154 ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGM------------------------YIATASEQGTIIRVFLVS  205 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~------------------------~lat~s~dg~~i~vwd~~  205 (337)
                      +    +.+.+||..+++....    .......++|++.                        .+..++.++. +.+||..
T Consensus       153 ~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  227 (337)
T d1pbyb_         153 G----RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDLE  227 (337)
T ss_dssp             S----SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEETT
T ss_pred             c----CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEcC
Confidence            5    3477899887654321    1111111222221                        1122222333 5789999


Q ss_pred             CCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccce
Q 019672          206 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  285 (337)
Q Consensus       206 ~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~  285 (337)
                      +++....... .+...+..++++|++.   +++++  ++.|++||+++.+...+.         ..+..   .       
T Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~--~~~i~v~d~~~~~~~~~~---------~~~~~---~-------  282 (337)
T d1pbyb_         228 TGEMAMREVR-IMDVFYFSTAVNPAKT---RAFGA--YNVLESFDLEKNASIKRV---------PLPHS---Y-------  282 (337)
T ss_dssp             TCCEEEEEEE-ECSSCEEEEEECTTSS---EEEEE--ESEEEEEETTTTEEEEEE---------ECSSC---C-------
T ss_pred             CCcEEEEEec-CCCcceEEEEecccce---EEEEc--cccEEEEECCCCcEEEEE---------cCCCC---E-------
Confidence            8876543322 2234577889999998   77765  588999999876543210         00110   1       


Q ss_pred             eeeeccCCCcccCEEEEEEeCCcEEEEEEec
Q 019672          286 VLRNAFPAGVKRASVSVITYNGYFVEYIFSI  316 (337)
Q Consensus       286 ~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~~  316 (337)
                         ..+++.+++++|++++.||.+.+|+..+
T Consensus       283 ---~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         283 ---YSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ---CEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             ---EEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence               1234467779999999999999997754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=4e-15  Score=136.13  Aligned_cols=177  Identities=12%  Similarity=0.068  Sum_probs=129.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-CCeEEEEECCCCe--eeeeecCCCCCceE-EEEeeCCC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA--ILDTIDTVPNLKGL-CAFSPSLN  146 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-d~~i~i~d~~~~~--~~~~~~~~~~~~~~-~~~~~~~~  146 (337)
                      .|++|.|||.++++++.++..+..+..++|+|++  ++++. |+.+++||+.+++  ...++....++.++ .+..++||
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            5899999999999999999988889999999874  55555 8999999998765  34455443333332 23345788


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCccccc----------------CceEEEEeCCCCCEEE-EEeCCCcEEEEEEcCCCce
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHCE----------------APLAAIVLSSNGMYIA-TASEQGTIIRVFLVSEATK  209 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~~----------------~~i~~~~~s~dg~~la-t~s~dg~~i~vwd~~~~~~  209 (337)
                      +.++++.++ .++.|++||..+++....                .....+.++|+|+.++ +.+.++. |.+||..+++.
T Consensus       120 G~~l~vs~~-~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~-i~~~d~~~~~~  197 (432)
T d1qksa2         120 DKYAIAGAY-WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK-ILLVDYTDLNN  197 (432)
T ss_dssp             TTEEEEEEE-ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE-EEEEETTCSSE
T ss_pred             CCEEEEEcC-CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe-EEEEEccCCCc
Confidence            988765554 589999999988765321                5567899999998765 4555666 68999998875


Q ss_pred             eEeeccCCcceeEEEEEeecCCCcccEEEEEeCC-CcEEEEecCCCc
Q 019672          210 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGFAI  255 (337)
Q Consensus       210 ~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d-g~v~iw~l~~~~  255 (337)
                      +...... ....+..++|+|||+   ++++++.+ +.+.++|....+
T Consensus       198 ~~~~~i~-~g~~~~~~~~spdg~---~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         198 LKTTEIS-AERFLHDGGLDGSHR---YFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEEEE-CCSSEEEEEECTTSC---EEEEEEGGGTEEEEEETTTTE
T ss_pred             ceEEEEc-ccCccccceECCCCC---EEEEeccccceEEEeecccce
Confidence            4432211 123478899999999   76666654 579999987654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.1e-14  Score=128.45  Aligned_cols=233  Identities=12%  Similarity=0.011  Sum_probs=149.4

Q ss_pred             EEEEEcCCCCEEEEEc-----------CCceEEEeCCCCcEEEEEeeCC---------EEEEEEccCCCEEEEEeCCCCC
Q 019672           11 FFVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVGA---------FSIVEMLYSSSLLAIVGAGEQP   70 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~-----------~~g~~vw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~   70 (337)
                      ..++|+|||++|++.+           ++.+++||+.+++.+.....+.         ...+.+..+...+++...+   
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---  126 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---  126 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---
Confidence            3689999999887643           2347999999998876543211         1234667777777766542   


Q ss_pred             CCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCC------CCCceEEEEee
Q 019672           71 SLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTV------PNLKGLCAFSP  143 (337)
Q Consensus        71 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~  143 (337)
                        .+..+.+||..+++.+..+..+.........+...+... |++..++..........+...      .......++  
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (355)
T d2bbkh_         127 --PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY--  202 (355)
T ss_dssp             --SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE--
T ss_pred             --CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc--
Confidence              578999999999999888876654443333333333333 555555544333222111110      000111222  


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCcccc-------c----------CceEEEEeCCCCCEEEEEeCCC---------c
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSHC-------E----------APLAAIVLSSNGMYIATASEQG---------T  197 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-------~----------~~i~~~~~s~dg~~lat~s~dg---------~  197 (337)
                      .++...+++.+  .++.+.+|++..+....       .          .....++++|++..++..+.++         .
T Consensus       203 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         203 SQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             ETTTTEEEEEB--TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cCCCCeEEEec--CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            23344555555  48999999988764321       0          3345689999999888776543         2


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .|++||..+++.+.++..   ...+.+++|||||+. -++++++.|++|+|||+++++.
T Consensus       281 ~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~-~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKP-LLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             EEEEEETTTCCEEEEEEE---EEEECEEEECCSSSC-EEEEEETTTTEEEEEETTTCCE
T ss_pred             eEEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCe-EEEEEECCCCEEEEEECCCCCE
Confidence            468999999998887753   245789999999971 0346677899999999988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.9e-14  Score=124.22  Aligned_cols=272  Identities=11%  Similarity=0.082  Sum_probs=167.4

Q ss_pred             EEEEcC-CceEEEeCCCCc---EEEEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE----EEEE
Q 019672           22 FALSTK-DGFKIFDSSTGR---LCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL----RELN   92 (337)
Q Consensus        22 la~g~~-~g~~vw~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~----~~~~   92 (337)
                      ++++.+ +.++||++++..   ++...+ .+.+..+.+.++++.++..+.      .|++|++|++..+...    ....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecc
Confidence            345544 457999986542   222222 244566778888888765554      5899999998765432    2334


Q ss_pred             cCCceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccC
Q 019672           93 FLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (337)
Q Consensus        93 ~~~~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~  168 (337)
                      ....+..++++++  .++++.  ++.+.+|+..............+.....++..++++.+++.++. .+..|.+|+...
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~-~~~~i~~~~~~~  159 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL-KQDRICLFTVSD  159 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc-ccceeeEEEecc
Confidence            4556778999876  455555  56899998876654444332222233344455677777777665 477899999876


Q ss_pred             Ccccc-----------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce----eEeec---cC-CcceeEEEEEeec
Q 019672          169 LHSHC-----------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK----SYSFR---RG-TYPSTIFSLSFGQ  229 (337)
Q Consensus       169 ~~~~~-----------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~----~~~~~---~~-~~~~~i~~l~fs~  229 (337)
                      .....           ......++|++++.++...........+|+......    .....   .. ........+++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            43221           145688999999998887765554467888654321    11111   11 1112366789999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccccceeeeeccCCCcccCEEEEEEe-CCc
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NGY  308 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~  308 (337)
                      |+++  .++++..++++.+|++........       .....+.. ...          ..+++.|++++|++++. ++.
T Consensus       240 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~p----------~~~a~spDGk~l~va~~~~~~  299 (333)
T d1ri6a_         240 DGRH--LYACDRTASLITVFSVSEDGSVLS-------KEGFQPTE-TQP----------RGFNVDHSGKYLIAAGQKSHH  299 (333)
T ss_dssp             TSSE--EEEEETTTTEEEEEEECTTSCCEE-------EEEEEECS-SSC----------CCEEECTTSSEEEEECTTTCE
T ss_pred             ccCc--eeeecccCCeEEEEEEcCCCCEEE-------EEEEeCCC-CCe----------eEEEEeCCCCEEEEEECCCCe
Confidence            9982  555566778999999876543221       00000000 000          12234677788887765 589


Q ss_pred             EEEEEEecCCCC
Q 019672          309 FVEYIFSINNCC  320 (337)
Q Consensus       309 ~~~~~~~~~~~~  320 (337)
                      +.+|.++.+.+.
T Consensus       300 v~v~~id~~tG~  311 (333)
T d1ri6a_         300 ISVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEEETTTTE
T ss_pred             EEEEEEECCCCc
Confidence            999999988764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.4e-14  Score=124.76  Aligned_cols=239  Identities=13%  Similarity=0.106  Sum_probs=147.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CC-ceEEEeCCCCcE--EE--EEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceE
Q 019672            5 SSSYPVFFVSFNQDNSGFALST-KD-GFKIFDSSTGRL--CY--ERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g~-~~-g~~vw~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v   77 (337)
                      .+.+.+.+++|+|||++|+++. .+ .+++|++++...  ..  .... .....+.+.++++.++..+.      .+++|
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~------~~~~v  107 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNV  107 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc------CCCce
Confidence            3567789999999999986554 34 479999876532  22  1111 23445678888888776654      47899


Q ss_pred             EEEECCCCCEEEEE---EcCCceeEEEEcCCe--EEEEE--CCeEEEEECCCCeeeeee----cCCCCCceEEEEeeCCC
Q 019672           78 CLFNTTTGTALREL---NFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTI----DTVPNLKGLCAFSPSLN  146 (337)
Q Consensus        78 ~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~  146 (337)
                      .+|+..........   .....+.++.++++.  ++++.  +..+.+|+..........    ...........+.++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            99998776554433   234467777787654  44444  568999998664322111    01111122234455556


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCccc---------------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeE
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSH---------------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  211 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~---------------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~  211 (337)
                      +..+..... ..+...+++.......               .......+++++||+++..+......+++|++.......
T Consensus       188 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (333)
T d1ri6a_         188 EQYAYCVNE-LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  266 (333)
T ss_dssp             SSEEEEEET-TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             ceeEEeecc-ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence            656555443 4677788876432211               114567889999999777666544347899987654433


Q ss_pred             eeccC-CcceeEEEEEeecCCCcccEEEEEe-CCCcEEEEecCC
Q 019672          212 SFRRG-TYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  253 (337)
Q Consensus       212 ~~~~~-~~~~~i~~l~fs~dg~~~~~las~s-~dg~v~iw~l~~  253 (337)
                      ..... .....+.+++|||||+   +|++++ .+++|+||+++.
T Consensus       267 ~~~~~~~~~~~p~~~a~spDGk---~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         267 SKEGFQPTETQPRGFNVDHSGK---YLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEEECSSSCCCEEECTTSS---EEEEECTTTCEEEEEEEET
T ss_pred             EEEEEeCCCCCeeEEEEeCCCC---EEEEEECCCCeEEEEEEEC
Confidence            32211 1122356899999999   776664 568999997754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=8.9e-14  Score=121.31  Aligned_cols=205  Identities=12%  Similarity=0.048  Sum_probs=123.6

Q ss_pred             CCCeEEEEEcCCCCEEE-EEcCCc-eEEEeCCCCcEEEEEeeC--------CEEEEEEccCCCEEEEEeCCCC-----CC
Q 019672            7 SYPVFFVSFNQDNSGFA-LSTKDG-FKIFDSSTGRLCYERAVG--------AFSIVEMLYSSSLLAIVGAGEQ-----PS   71 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la-~g~~~g-~~vw~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~-----~~   71 (337)
                      .....+++|+|||++++ ++..++ +.+||+.+++.+......        ....+.+.+++..+++......     ..
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence            44567999999999875 455554 799999999887655321        1112445556655544331100     00


Q ss_pred             CCCceEEEEECCCCCEEE---EEEcCCceeEEEEcCCeEEEEECCeEEEEECCCCeeeeeecCC----------------
Q 019672           72 LSPRRLCLFNTTTGTALR---ELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV----------------  132 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~---~~~~~~~v~~i~~~~~~~~v~~d~~i~i~d~~~~~~~~~~~~~----------------  132 (337)
                      ..+..+.+||..+++...   ....+..+..+.++++..+.+.+..+.+|++.+++.+..+..+                
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  198 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence            135667777766654332   2222223333444444444444445555555544433332111                


Q ss_pred             --------------------------------------------------CCCceEEEEeeCCCccEEEEcCCCCccEEE
Q 019672          133 --------------------------------------------------PNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus       133 --------------------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                                                                        ++...+.....++++..+++..   ++.|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~  275 (346)
T d1jmxb_         199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLA  275 (346)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEE
T ss_pred             EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec---CCeEE
Confidence                                                              0111223333344444555543   57899


Q ss_pred             EEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeecc
Q 019672          163 VYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  215 (337)
Q Consensus       163 i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~  215 (337)
                      +||+.+++....    ..+.+++|||||++|++++.||. |+|||+++++.+.+++.
T Consensus       276 v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~-v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         276 KYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEEC
T ss_pred             EEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECccCCEEEEEEC
Confidence            999998876543    67999999999999999999997 69999999999988764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=3.3e-14  Score=125.21  Aligned_cols=244  Identities=11%  Similarity=0.069  Sum_probs=158.2

Q ss_pred             CCeEEEEEcCCCCEEEEEc------CCceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCC---CCCCCceEE
Q 019672            8 YPVFFVSFNQDNSGFALST------KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ---PSLSPRRLC   78 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~------~~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~d~~v~   78 (337)
                      +|+.-.+.+|||+.+++..      .+.+.+||..+++++.....+....+.+.++++.+++.+....   ....|+.|+
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            4555557789999987653      2247899999999888776665566788888887766542100   001368999


Q ss_pred             EEECCCCCEEEEEEcCC--------ceeEEEEcCC--eEEEEE---CCeEEEEECCCCeeeeeecCCCCCceE-----EE
Q 019672           79 LFNTTTGTALRELNFLT--------SILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGL-----CA  140 (337)
Q Consensus        79 iwd~~~~~~~~~~~~~~--------~v~~i~~~~~--~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~  140 (337)
                      +||+.+++.+.++..+.        ....+.|+++  .++++.   +..+.+||..+++.+..+..+......     ..
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            99999999988875432        2244667665  355554   568999999999888877654321100     11


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCcccccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe--ecc---
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS--FRR---  215 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~--~~~---  215 (337)
                      +..++++..+..... .++.+.+++.......+...+...++++++..++.++.+|. +++|++..++....  ...   
T Consensus       162 ~~~~~dg~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  239 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFG-TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK-IHQIDLSSGDAKFLPAVEALTE  239 (355)
T ss_dssp             EEEETTSCEEEEECC-SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE-EEEEECTTSSCEECCCEESSCH
T ss_pred             EEEcCCCCEEEEEec-CCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCe-EEEEecCCCcEEEEeccCCccc
Confidence            223344445444433 35666666666655555566777788888899999999997 58999988764211  110   


Q ss_pred             -----CCcceeEEEEEeecCCCcccEEEEEeCC----------CcEEEEecCCCcc
Q 019672          216 -----GTYPSTIFSLSFGQSMQFQDILVATSSS----------GSLHVFSPGFAIN  256 (337)
Q Consensus       216 -----~~~~~~i~~l~fs~dg~~~~~las~s~d----------g~v~iw~l~~~~~  256 (337)
                           ...+.....++++|++.   .++..+.+          +.|.+||+.+.+.
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             ceEeeeeeccceEEEEEeCCCC---eEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence                 00011123478999998   77666544          3699999877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.53  E-value=4.3e-12  Score=112.31  Aligned_cols=69  Identities=13%  Similarity=0.044  Sum_probs=52.9

Q ss_pred             ccEEEEEEccCCccccc----CceEEEEeCCCCCE--EEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          158 KGSVLVYNVMELHSHCE----APLAAIVLSSNGMY--IATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~--lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                      ++.+.+||+.+++....    ..+.+++|+|||+.  +++++.|++ |+|||+.+|+.+.++....  .....|++.+
T Consensus       297 ~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~~g--~~P~~l~~~~  371 (373)
T d2madh_         297 AKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVELG--SGPQVLSVMN  371 (373)
T ss_pred             CCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECCCC--CCCcEEEEec
Confidence            67899999998876543    77899999999984  578889987 6999999999999886321  1234555543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.8e-13  Score=120.59  Aligned_cols=231  Identities=11%  Similarity=-0.017  Sum_probs=147.0

Q ss_pred             EEEEcCCCCEEEEEcC-----------CceEEEeCCCCcEEEEEeeCC---------EEEEEEccCCCEEEEEeCCCCCC
Q 019672           12 FVSFNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVGA---------FSIVEMLYSSSLLAIVGAGEQPS   71 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~-----------~g~~vw~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~   71 (337)
                      .++|+|||+.|++.+.           +.+++||..+++.+.....+.         ...+.+.+++..+++...     
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-----  143 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-----  143 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-----
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-----
Confidence            5789999999887642           337999999998877653211         123567788887776554     


Q ss_pred             CCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEEEE-ECCeEEEEECCCCeeeeeecCC----CCCceEEEEeeCCC
Q 019672           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV-LREKTYIYDANTLAILDTIDTV----PNLKGLCAFSPSLN  146 (337)
Q Consensus        72 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~v~-~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~  146 (337)
                       .++.+.+||+.+++.+..+..+.........+...+.. .|+++.++++............    ..........++++
T Consensus       144 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         144 -GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             -SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             47899999999999998887665332222222233222 2888888888655332222111    01111123344555


Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc-----------------cCceEEEEeCCCCCEEEEEeCCC--------cEEEE
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC-----------------EAPLAAIVLSSNGMYIATASEQG--------TIIRV  201 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~-----------------~~~i~~~~~s~dg~~lat~s~dg--------~~i~v  201 (337)
                      +..+...    .+.+.++++.......                 ......++++|++..+.....++        ..|.+
T Consensus       223 g~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         223 GMLVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TEEEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             cEEEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            5554433    3445555554332110                 03345688999998876654322        23689


Q ss_pred             EEcCCCceeEeeccCCcceeEEEEEeecCCCcccE-EEEEeCCCcEEEEecCCCccc
Q 019672          202 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI-LVATSSSGSLHVFSPGFAINQ  257 (337)
Q Consensus       202 wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~-las~s~dg~v~iw~l~~~~~~  257 (337)
                      ||..+++.+.++..   ...+.+++|||||+  .+ +++++.+++|+|||..+++..
T Consensus       299 ~D~~t~~~~~~~~~---~~~~~~~a~spDG~--~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         299 VTASVGQTSGPISN---GHDSDAIIAAQDGA--SDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EESSSCCEEECCEE---EEEECEEEECCSSS--CEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EECCCCcEeEEecC---CCceeEEEECCCCC--EEEEEEeCCCCeEEEEECCCCCEE
Confidence            99999998887753   34688999999996  23 567788999999999887653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=3.6e-08  Score=83.63  Aligned_cols=230  Identities=14%  Similarity=0.147  Sum_probs=145.0

Q ss_pred             eEEEEEcCCCCEEEEEcC-CceEEEeCCCCcEEEEEee--------CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672           10 VFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV--------GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~-~g~~vw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      -..++++++|+.+++-.. ..+++||.+ ++.+.....        ....-+....+....+++..+     ..+.|..+
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~~   98 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIY   98 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEE
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccC-----Cccccccc
Confidence            478999999998777544 457999976 555544311        011222333344444444332     35677777


Q ss_pred             ECCCCCEEEEEEcC--CceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCC
Q 019672           81 NTTTGTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (337)
Q Consensus        81 d~~~~~~~~~~~~~--~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  155 (337)
                      +. .++....+...  .....+++++++ ++++.  .+.+.+++. +++.+..+....+......++.++++..+++.. 
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~-  175 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-  175 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeec-
Confidence            75 46666666433  246678887654 44444  356888875 456666664444444555666677776666554 


Q ss_pred             CCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec
Q 019672          156 TTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  229 (337)
Q Consensus       156 ~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~  229 (337)
                       ..+.|++||.......      .......|+++|+|+.+++-+..+..|.+|+ .+|+.+.++...........|++.|
T Consensus       176 -~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         176 -RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             -GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred             -cccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence             4789999997533211      1145789999999998877554443468898 5688777764433333578899999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCC
Q 019672          230 SMQFQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       230 dg~~~~~las~s~dg~v~iw~l~~~  254 (337)
                      ||.   + ++++.+++|++|...+.
T Consensus       254 dG~---l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         254 DGS---V-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTE---E-EEEETTTEEEEEECSCC
T ss_pred             CCc---E-EEEeCCCeEEEEEeeee
Confidence            996   4 45567899999997654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.22  E-value=6.4e-10  Score=100.04  Aligned_cols=236  Identities=8%  Similarity=0.044  Sum_probs=139.5

Q ss_pred             CEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC------------------------------Cc-eeEE--EEcCC
Q 019672           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL------------------------------TS-ILAV--RLNKK  105 (337)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~------------------------------~~-v~~i--~~~~~  105 (337)
                      .+++++++|     .+++|++||+.+++.+.++..-                              .+ ....  ..+++
T Consensus        10 e~y~f~Sgg-----~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr   84 (441)
T d1qnia2          10 EYYGFWSGG-----HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK   84 (441)
T ss_dssp             SEEEEEECB-----TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE
T ss_pred             CEEEEEeCC-----CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC
Confidence            467778876     6899999999999988887421                              11 1111  12334


Q ss_pred             eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCcc--EEEEcCCC---------------CccEEEEEEc
Q 019672          106 RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC--FLAVPAST---------------TKGSVLVYNV  166 (337)
Q Consensus       106 ~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~la~~~~~---------------~dg~v~i~d~  166 (337)
                      .+++..  +++|.++|+.+++....+..+ +..+.-.+.+++++.  +++..+..               .-..+..+|.
T Consensus        85 ~lfV~d~~~~rVavIDl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             EEEEEcCCCCEEEEEECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            455555  679999999999887766532 223444445444444  55544310               0023355787


Q ss_pred             cCCccccc----CceEEEEeCCCCCEEEEEeCCC----------------------------------------cEEEEE
Q 019672          167 MELHSHCE----APLAAIVLSSNGMYIATASEQG----------------------------------------TIIRVF  202 (337)
Q Consensus       167 ~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg----------------------------------------~~i~vw  202 (337)
                      .+.+...+    .....++|+|||+++++++.+.                                        .++.|+
T Consensus       164 ~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         164 ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             TTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             ccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            77665433    6678899999999999887542                                        123345


Q ss_pred             EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcccCCCCcccccccccccccceeecccc
Q 019672          203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPA  282 (337)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  282 (337)
                      +....+.+..+..+..   ...+++||||++  .++++..+++|.|||+++-.+.-.  ....+...+.++       + 
T Consensus       244 ~~~~~~v~~~IPvgks---PhGv~vSPDGky--l~~~~~~~~tvsv~d~~k~~~~~~--~~~~~~~~~~~~-------~-  308 (441)
T d1qnia2         244 GRGESEFTRYIPVPKN---PHGLNTSPDGKY--FIANGKLSPTVSVIAIDKLDDLFE--DKIELRDTIVAE-------P-  308 (441)
T ss_dssp             CSSSCSSEEEECCBSS---CCCEEECTTSCE--EEEECTTSSBEEEEEGGGHHHHTT--TSSCGGGGEEEC-------C-
T ss_pred             cccCCceEEEEeCCCC---ccCceECCCCCE--EEEeCCcCCcEEEEEeehhhhHhh--ccCCcceEEEee-------c-
Confidence            5555455555543322   356899999993  446678899999999976332110  000000000000       0 


Q ss_pred             cceeeeeccCCCcccCEEEEEEeCCcEEEEEEe
Q 019672          283 DHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  315 (337)
Q Consensus       283 ~~~~~~~~~~~~~~~~~l~~~~~dg~~~~~~~~  315 (337)
                      ..-+.-.+..+..+++-+.+...|.++..|+++
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             ccccCcccceecCCceEEEcccccceEEEeccc
Confidence            000011122335556777788889999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=3.1e-10  Score=100.37  Aligned_cols=239  Identities=8%  Similarity=-0.032  Sum_probs=146.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE--c-CCc---eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCC---CCCCCCc
Q 019672            5 SSSYPVFFVSFNQDNSGFALS--T-KDG---FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE---QPSLSPR   75 (337)
Q Consensus         5 ~~~~~v~~~~fs~dg~~la~g--~-~~g---~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~d~   75 (337)
                      .+.++...++..+|++.....  . ..+   +.+||..+++.+.....+....+.+.+++..+++.+...   ..+..|+
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~   96 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTD   96 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCC
Confidence            456666777888999864322  2 222   466799999987776655555677888888777665210   0113578


Q ss_pred             eEEEEECCCCCEEEEEEcCC--------ceeEEEEcCC--eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEee
Q 019672           76 RLCLFNTTTGTALRELNFLT--------SILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (337)
Q Consensus        76 ~v~iwd~~~~~~~~~~~~~~--------~v~~i~~~~~--~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (337)
                      +|++||..+++++..+..+.        ....+.|+++  .++++.  ++.+.+||+.+++.+..+..+...    .+.+
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~  172 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----HIHP  172 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC----CCEE
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc----eEcc
Confidence            89999999999998876432        1234677765  466665  679999999999988887654332    1122


Q ss_pred             CCCccEEEEcCCCCccEEEEEEccCCccc-----------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEe
Q 019672          144 SLNACFLAVPASTTKGSVLVYNVMELHSH-----------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  212 (337)
Q Consensus       144 ~~~~~~la~~~~~~dg~v~i~d~~~~~~~-----------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~  212 (337)
                      .+...+++ ..  .||.+.++++......           +...+..+.+++++..+.+.+  +. +.++++..++....
T Consensus       173 ~~~~~~v~-~~--~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~-v~~~~~~~~~~~~~  246 (368)
T d1mdah_         173 GAAATHYL-GS--CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SS-ILQGDIPAAGATMK  246 (368)
T ss_dssp             EETTEEEC-CC--CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SC-CEEEECCSSCCEEE
T ss_pred             CCCceEEE-Ec--CCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC--CC-EEEEeecCCceEEE
Confidence            22222322 22  3788888877644321           114456778888887766543  33 35677665543321


Q ss_pred             eccCC----------cceeEEEEEeecCCCcccEEEEEeCC---------CcEEEEecCCCcc
Q 019672          213 FRRGT----------YPSTIFSLSFGQSMQFQDILVATSSS---------GSLHVFSPGFAIN  256 (337)
Q Consensus       213 ~~~~~----------~~~~i~~l~fs~dg~~~~~las~s~d---------g~v~iw~l~~~~~  256 (337)
                      .....          .+.....++++|++.   .+.....+         ..|.+||..+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~---~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~  306 (368)
T d1mdah_         247 AAIDGNESGRKADNFRSAGFQMVAKLKNTD---GIMILTVEHSRSCLAAAENTSSVTASVGQT  306 (368)
T ss_dssp             CCCCSSCTHHHHTTEEECSSSCEEEETTTT---EEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred             eecccccceeeeeeecCCCceeEEEcCCCC---EEEEEecCCCceeecCCceEEEEECCCCcE
Confidence            11000          011123478899988   66554322         2588999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.09  E-value=1.9e-10  Score=103.52  Aligned_cols=226  Identities=11%  Similarity=-0.010  Sum_probs=142.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CceEEEeCCCCcEEEEEe---eCCEEEEEEccCCCEEEEEeCCCCC--C---------
Q 019672            8 YPVFFVSFNQDNSGFALSTK--DGFKIFDSSTGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQP--S---------   71 (337)
Q Consensus         8 ~~v~~~~fs~dg~~la~g~~--~g~~vw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~--~---------   71 (337)
                      ..+.+..++|||++|.+...  +.+.++|+++++......   ..+...+.+..+++...++..+...  .         
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            34566677899999876643  458999999997654333   2344456666666543222221110  0         


Q ss_pred             -CCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe--EEEEE-------------------------------------
Q 019672           72 -LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-------------------------------------  111 (337)
Q Consensus        72 -~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~v~~-------------------------------------  111 (337)
                       .....+..+|..+.+...++........+.+++++  +++..                                     
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~  231 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNF  231 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCC
T ss_pred             ccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCE
Confidence             00124567899999888888777777777776553  22222                                     


Q ss_pred             -----CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc------------
Q 019672          112 -----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE------------  174 (337)
Q Consensus       112 -----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~------------  174 (337)
                           ++.+.+++....+.+..+..+..|.++   ..+||+.++++++. .+++|.|||+.+......            
T Consensus       232 ~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv---~vSPDGkyl~~~~~-~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         232 KTIGDSKVPVVDGRGESEFTRYIPVPKNPHGL---NTSPDGKYFIANGK-LSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             BCCTTCCCCEEECSSSCSSEEEECCBSSCCCE---EECTTSCEEEEECT-TSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             EEeCCCCcEEEEcccCCceEEEEeCCCCccCc---eECCCCCEEEEeCC-cCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                 123344444445566667666666554   55678889888876 699999999976543211            


Q ss_pred             ----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC----------ceeEeec----cCCcceeEEEEEeecCCCcccE
Q 019672          175 ----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----------TKSYSFR----RGTYPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       175 ----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~----------~~~~~~~----~~~~~~~i~~l~fs~dg~~~~~  236 (337)
                          -.....+|+++|....+..-|.. |..|++...          ..+.++.    .| |...+.+.+|+|||+   |
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~-v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G-H~~~~~~~t~~pdGk---~  382 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQ-VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG-HNHASLTESRDADGK---W  382 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCCC---E
T ss_pred             cccccCcccceecCCceEEEcccccce-EEEeccchhhhhhccCCCceeEeccccccCCC-CCccccccccCCCCc---E
Confidence                12355689999998888888987 578997411          1222221    12 233456678999999   9


Q ss_pred             EEEEeC
Q 019672          237 LVATSS  242 (337)
Q Consensus       237 las~s~  242 (337)
                      |++++.
T Consensus       383 l~s~~k  388 (441)
T d1qnia2         383 LVVLSK  388 (441)
T ss_dssp             EEEEES
T ss_pred             EEecCc
Confidence            999943

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.99  E-value=4.3e-08  Score=86.59  Aligned_cols=240  Identities=12%  Similarity=0.097  Sum_probs=128.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCceEEEeCCC-CcEEEEE-e-e-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GRLCYER-A-V-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~g~~vw~~~~-~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd   81 (337)
                      ...++..++|+||+++|.+...+++..|.++. +.+.... . . .....+.+..+.+.+.++...    +..++|..+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~----~~~~~v~~~~  113 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK----QPPYAVYANP  113 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS----STTCCEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec----CCCCEEEEeE
Confidence            34556779999999998888777776665443 2222211 1 1 111122223333333232221    1233343332


Q ss_pred             C------------C-CCCEE---EEEE--cCCceeEEEEcCCe--EEEEE--CCeEEEEECCCC-ee--eeeecCCCCCc
Q 019672           82 T------------T-TGTAL---RELN--FLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AI--LDTIDTVPNLK  136 (337)
Q Consensus        82 ~------------~-~~~~~---~~~~--~~~~v~~i~~~~~~--~~v~~--d~~i~i~d~~~~-~~--~~~~~~~~~~~  136 (337)
                      +            . .++.-   ....  ....+.++.++|++  ++++.  .+.|.+|++... ..  ...+.......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            2            1 11111   1111  12246788898764  45554  468999876533 22  22222222223


Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc-----c-------------------CceEEEEeCCCCCEEEEE
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-----E-------------------APLAAIVLSSNGMYIATA  192 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~-----~-------------------~~i~~~~~s~dg~~lat~  192 (337)
                      +...+.++|++.++.+... .+++|.+||+.......     .                   .....+.++|||++|+++
T Consensus       194 gPr~i~f~pdg~~~yv~~e-~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CEEEEEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCceEEEecc-CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            4555667788877766654 58999999986543210     0                   224678999999998877


Q ss_pred             eC--C----CcEEEEEEcCCCceeEe---ecc-CCcceeEEEEEeec-CCCcccEEEEE-eCCCcEEEEecCCC
Q 019672          193 SE--Q----GTIIRVFLVSEATKSYS---FRR-GTYPSTIFSLSFGQ-SMQFQDILVAT-SSSGSLHVFSPGFA  254 (337)
Q Consensus       193 s~--d----g~~i~vwd~~~~~~~~~---~~~-~~~~~~i~~l~fs~-dg~~~~~las~-s~dg~v~iw~l~~~  254 (337)
                      ..  +    +. |-.|++.....+..   +.. .........++|+| +|+   +|+++ ..+++|.||+++..
T Consensus       273 nr~~~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~---~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         273 SRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE---WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT---EEEEECSSSCEEEEEEEETT
T ss_pred             cccCCCccceE-EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC---EEEEEeCCCCeEEEEEEeCC
Confidence            42  1    22 45666654322211   110 00011235689998 788   77666 56789999998643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.89  E-value=3e-06  Score=72.20  Aligned_cols=218  Identities=9%  Similarity=0.013  Sum_probs=128.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC--
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~--   85 (337)
                      -+..++++|||+++++...++ +..|+.+.....+.........+.+..+.++++...+       ++.+..|+....  
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~-------~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN-------ADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEEC-------TTSCEEEEEECTTS
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecC-------CceEEEEEeccccc
Confidence            477899999999988887655 5666765443333333344555667767675444333       566777765433  


Q ss_pred             CEEEEEE--cCCceeEEEEcCCeEEEEE---CCeEEEEECCCCeeeeeec--------CCCCCceEEEEeeCCCccEEEE
Q 019672           86 TALRELN--FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTID--------TVPNLKGLCAFSPSLNACFLAV  152 (337)
Q Consensus        86 ~~~~~~~--~~~~v~~i~~~~~~~~v~~---d~~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~la~  152 (337)
                      .......  ......++.+.++..+.+.   .+.+..+|...+.......        ..........++.+++.  +..
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~--l~~  179 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF--LYV  179 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE--EEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCc--eee
Confidence            2222222  2335778888777665554   5678888887664322111        11112233455665543  333


Q ss_pred             cCCCCccEEEEEEccCCcccc-------cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCce--eEeeccCCcceeEE
Q 019672          153 PASTTKGSVLVYNVMELHSHC-------EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIF  223 (337)
Q Consensus       153 ~~~~~dg~v~i~d~~~~~~~~-------~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~  223 (337)
                      ... ..+.|..++........       ......++|+++|++.++...++++ ..++.. |+.  +.....+  -...+
T Consensus       180 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V-~~i~p~-G~~~~~~~~~~~--~~~pt  254 (302)
T d2p4oa1         180 SNT-EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV-VRIAPD-RSTTIIAQAEQG--VIGST  254 (302)
T ss_dssp             EET-TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE-EEECTT-CCEEEEECGGGT--CTTEE
T ss_pred             ecC-CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcE-EEECCC-CCEEEEEecCCC--CCCce
Confidence            332 47889888876543221       1456679999999988888788874 567654 443  2222211  12378


Q ss_pred             EEEe---ecCCCcccEEEEEeCC
Q 019672          224 SLSF---GQSMQFQDILVATSSS  243 (337)
Q Consensus       224 ~l~f---s~dg~~~~~las~s~d  243 (337)
                      +++|   ++|++   .|..++..
T Consensus       255 ~vafg~~~~D~~---~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCT---AIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTT---EEEEEECT
T ss_pred             EEEEcCCCCCCC---EEEEECCC
Confidence            9999   67888   77666554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.88  E-value=8.5e-09  Score=94.01  Aligned_cols=148  Identities=11%  Similarity=0.053  Sum_probs=101.9

Q ss_pred             EEEEcCCeEEEEE-CCeEEEEECCCCeeeeeecCC---CCCceEEEEeeCCCccEEEEcCC-------CCccEEEEEEcc
Q 019672           99 AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTV---PNLKGLCAFSPSLNACFLAVPAS-------TTKGSVLVYNVM  167 (337)
Q Consensus        99 ~i~~~~~~~~v~~-d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~la~~~~-------~~dg~v~i~d~~  167 (337)
                      .+.|.++.-++.. ++.+.+||+.+++....+...   .....+.+++++||+.+|++...       ..++.+.+||+.
T Consensus        21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence            4556555555544 789999999998765544322   12234667788899999887631       125789999999


Q ss_pred             CCcccc----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcc----------------eeEEEEEe
Q 019672          168 ELHSHC----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP----------------STIFSLSF  227 (337)
Q Consensus       168 ~~~~~~----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~----------------~~i~~l~f  227 (337)
                      +++...    ...+..+.|||||++||..... . +.+|+..+++.......+...                .....+.|
T Consensus       101 ~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~-~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         101 KRQLITEERIPNNTQWVTWSPVGHKLAYVWNN-D-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TTEECCSSCCCTTEEEEEECSSTTCEEEEETT-E-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             CCcccccccCCccccccccccCcceeeEeecc-c-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            876532    3779999999999999997654 5 589999988765543221100                11245789


Q ss_pred             ecCCCcccEEEEEeCCCc-EEEEec
Q 019672          228 GQSMQFQDILVATSSSGS-LHVFSP  251 (337)
Q Consensus       228 s~dg~~~~~las~s~dg~-v~iw~l  251 (337)
                      ||||+   +||....|.+ |..|.+
T Consensus       179 SPDGk---~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         179 SPNGT---FLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CTTSS---EEEEEEEECTTCCEEEE
T ss_pred             CCCCC---ccceeEecCCcCceEEE
Confidence            99999   9999887655 555544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=1.9e-07  Score=84.76  Aligned_cols=142  Identities=11%  Similarity=0.021  Sum_probs=93.9

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-------CCEEEEEEccCCCEEEEEeCCCCC--CCCCceEEEEEC
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-------GAFSIVEMLYSSSLLAIVGAGEQP--SLSPRRLCLFNT   82 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~--~~~d~~v~iwd~   82 (337)
                      .+.|.+|++++.. .++++.+||..+++...-...       ..+....+.+++..+++.+.....  .+.++.+.|||+
T Consensus        21 ~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          21 SLRWISDHEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CCEECSSSEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCEeCCCCEEEEE-cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            5789999987764 356689999999976433321       345667788899988887642111  123578999999


Q ss_pred             CCCCEEEEEEcCCceeEEEEcCCeE--EEEECCeEEEEECCCCeeeeeecCCCCC----------------ceEEEEeeC
Q 019672           83 TTGTALRELNFLTSILAVRLNKKRL--VIVLREKTYIYDANTLAILDTIDTVPNL----------------KGLCAFSPS  144 (337)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~  144 (337)
                      ++++......++..+..+.|+|++-  +...++.+++|++.+++..+........                ....++.++
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS  179 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS  179 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred             CCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence            9987544344556788899988764  4445899999999888655433211100                011234567


Q ss_pred             CCccEEEEcC
Q 019672          145 LNACFLAVPA  154 (337)
Q Consensus       145 ~~~~~la~~~  154 (337)
                      ||+..||+..
T Consensus       180 PDGk~ia~~~  189 (470)
T d2bgra1         180 PNGTFLAYAQ  189 (470)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCccceeE
Confidence            7888888753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.2e-05  Score=66.43  Aligned_cols=213  Identities=14%  Similarity=0.078  Sum_probs=118.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-c---eEEEeCCCCcEE-EEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEE
Q 019672            6 SSYPVFFVSFNQDNSGFALSTKD-G---FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (337)
Q Consensus         6 ~~~~v~~~~fs~dg~~la~g~~~-g---~~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iw   80 (337)
                      ....+.+.+|||||+.||-.... +   +.+.+..++... ............+.+++..+++.....    ....+..+
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~----~~~~~~~~  112 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----GSLNLYVM  112 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC----Cccceeec
Confidence            34567899999999999865443 3   355566666543 233334555667788888888776521    12233333


Q ss_pred             ECCCCCEEEEEEcCCceeEEEEc--CCeEEEEE--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           81 NTTTGTALRELNFLTSILAVRLN--KKRLVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~--~~~~~v~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      .....................++  .+......  ++  .|.+.++......... ..  .........+|++..+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~--~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WE--GSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CS--SSEEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee-cc--cccccccccccccceeEEEe
Confidence            33333333222222222222232  33344443  33  6777777665433222 11  22334445677777877665


Q ss_pred             CCCccE--EEEEEccCCcccc---cCceEEEEeCCCCCEEEEEeCCC--cEEEEEEcCCCceeEeeccCCcceeEEEEEe
Q 019672          155 STTKGS--VLVYNVMELHSHC---EAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  227 (337)
Q Consensus       155 ~~~dg~--v~i~d~~~~~~~~---~~~i~~~~~s~dg~~lat~s~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~f  227 (337)
                      . ..+.  +.+.|........   ........|||||++||-.+..+  ..|.++++..+... .+...  ...+...+|
T Consensus       190 ~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~--~g~~~~p~W  265 (269)
T d2hqsa1         190 S-NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPAT--DGQVKFPAW  265 (269)
T ss_dssp             E-CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCS--SSEEEEEEE
T ss_pred             e-cCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCC--CCcEEeEEe
Confidence            3 2444  4444555443321   25667889999999998666443  23678999876553 34322  345778899


Q ss_pred             ec
Q 019672          228 GQ  229 (337)
Q Consensus       228 s~  229 (337)
                      ||
T Consensus       266 SP  267 (269)
T d2hqsa1         266 SP  267 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.65  E-value=2.8e-05  Score=66.48  Aligned_cols=232  Identities=9%  Similarity=0.011  Sum_probs=130.7

Q ss_pred             CeEEEEEcCCCCEEEEEcCC--------ceEEEeCCCCcEEEEE--eeC----CEEEEEEccCCCEEEEEeCCCCCCCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKD--------GFKIFDSSTGRLCYER--AVG----AFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~--------g~~vw~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (337)
                      ....++|.|||+++++....        .+..||.++++.....  ...    .-.-+.+..+.+.+.+...       .
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~   91 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------R   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------T
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------C
Confidence            34678999999987765432        2566777777543322  111    1123445555565555443       4


Q ss_pred             ceEEEEECCCCCEEEE-EEcCC----ceeEEEEcCCeEEEEEC------------------CeEEEEECCCCeeeeeecC
Q 019672           75 RRLCLFNTTTGTALRE-LNFLT----SILAVRLNKKRLVIVLR------------------EKTYIYDANTLAILDTIDT  131 (337)
Q Consensus        75 ~~v~iwd~~~~~~~~~-~~~~~----~v~~i~~~~~~~~v~~d------------------~~i~i~d~~~~~~~~~~~~  131 (337)
                      +.|...|...+..... .....    ...++.+++++.+..+|                  +.|+.++. +++.......
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~  170 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA  170 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC
Confidence            5688888765432211 11111    24567777654333321                  13333433 2222222111


Q ss_pred             CCCCceEEEEeeCCCc--cEEEEcCCCCccEEEEEEccCCcccc------c------CceEEEEeCCCCCEEEEEeCCCc
Q 019672          132 VPNLKGLCAFSPSLNA--CFLAVPASTTKGSVLVYNVMELHSHC------E------APLAAIVLSSNGMYIATASEQGT  197 (337)
Q Consensus       132 ~~~~~~~~~~~~~~~~--~~la~~~~~~dg~v~i~d~~~~~~~~------~------~~i~~~~~s~dg~~lat~s~dg~  197 (337)
                      ...+ .-+++++++++  ..|.++.. ..+.|..||+.......      .      .....++++++|++.++....+.
T Consensus       171 ~~~p-NGi~~~~d~d~~~~~lyv~d~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         171 FQFP-NGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             ESSE-EEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             ccee-eeeEECCCCCcceeEEEEEee-cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence            1111 12355554432  24444433 47889999876432211      0      23567999999998887777776


Q ss_pred             EEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCc
Q 019672          198 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       198 ~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~  255 (337)
                       |.+||.+.++.+..+...  .....+++|.||++  .++++.+..|+|.-+++..+.
T Consensus       249 -I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~--~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         249 -IEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTK--TIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             -EEEECTTCBSCSEEEECS--SSCEEEEEECTTSS--EEEEEETTTTEEEEEECSSCB
T ss_pred             -EEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCC--EEEEEECCCCcEEEEECCCCC
Confidence             689998877766555432  23478899999997  255677778988888876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=2.6e-05  Score=68.20  Aligned_cols=162  Identities=12%  Similarity=0.073  Sum_probs=93.8

Q ss_pred             EEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc----------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~----------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                      ..++.++|++.++++++. ....|.+|+.......          .......++|+|+|+++....+.+..|.+|++..+
T Consensus       147 ~h~v~~sPdG~~l~v~d~-g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEEEECTTSSEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEECCCCCEEEEeeC-CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            346678889988887764 4567888876532211          01557889999999998877776555789998766


Q ss_pred             ceeEeecc-----------------CCcceeEEEEEeecCCCcccEEEEEeC-C-----CcEEEEecCCCcccCCCCccc
Q 019672          208 TKSYSFRR-----------------GTYPSTIFSLSFGQSMQFQDILVATSS-S-----GSLHVFSPGFAINQRRGGRTS  264 (337)
Q Consensus       208 ~~~~~~~~-----------------~~~~~~i~~l~fs~dg~~~~~las~s~-d-----g~v~iw~l~~~~~~~~~~~~~  264 (337)
                      +.......                 .........+.++|||+   +|.++.. +     +.|-.|++........    .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~---~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~----~  298 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---YMFASSRANKFELQGYIAGFKLRDCGSIEK----Q  298 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---EEEEEEEESSTTSCCEEEEEEECTTSCEEE----E
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCC---EEEEEcccCCCccceEEEEEEecCCCceee----E
Confidence            43211100                 01112356789999999   7776632 2     3377777765332110    0


Q ss_pred             ccccccccccceeecccccceeeeeccCCCc-ccCEEEEEE-eCCcEEEEEEecCC
Q 019672          265 SILGSILPESVNEVLDPADHHVLRNAFPAGV-KRASVSVIT-YNGYFVEYIFSINN  318 (337)
Q Consensus       265 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~l~~~~-~dg~~~~~~~~~~~  318 (337)
                      ..+....   ....|..        .+.+.+ ++++|++.. .+|.|.+|+++.+.
T Consensus       299 ~~~~~~~---~~G~~p~--------~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         299 LFLSPTP---TSGGHSN--------AVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEECS---SCCTTCC--------CEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             eEeeEEE---cCCCCcc--------EEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            0000000   0000110        111233 457777664 67999999997664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=4.3e-06  Score=69.59  Aligned_cols=223  Identities=8%  Similarity=0.020  Sum_probs=123.6

Q ss_pred             EEEEEcCCCCEEEEEcC-Cc-eEEEeCCCCcEE-EEEe-eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           11 FFVSFNQDNSGFALSTK-DG-FKIFDSSTGRLC-YERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        11 ~~~~fs~dg~~la~g~~-~g-~~vw~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      ..++++++|..+++... .+ +..++..+.... .... ......+++..+.+.  +++..     ..+.+++++..++.
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i--~v~d~-----~~~~i~~~~~~~~~   89 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV--YVTDF-----NNRVVTLAAGSNNQ   89 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCE--EEEET-----TTEEEEECTTCSCC
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCE--EEeee-----eeceeeeeeeccce
Confidence            68899999997666543 34 344544333221 1111 111122344444443  33331     35566666655555


Q ss_pred             EEEEEEcCCceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeee-ecCCCCCceEEEEeeCCCccEEEEcCCCCccEEE
Q 019672           87 ALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (337)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~  162 (337)
                      .+..........+++++++. ++++.  .+.+..++......... ......+.   +++.++++.++++..  ..+.|.
T Consensus        90 ~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~~~--~~~~i~  164 (260)
T d1rwia_          90 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVTDT--DNNRVV  164 (260)
T ss_dssp             EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEEEG--GGTEEE
T ss_pred             eeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcc---eeeecCCCCEeeecc--cccccc
Confidence            44433333567888887764 44443  45677777654332211 11112222   344455665555544  368899


Q ss_pred             EEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEE
Q 019672          163 VYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  237 (337)
Q Consensus       163 i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~l  237 (337)
                      .+|........     ......|+++++|+++++-...+.+ ..++..... ...+... .-.....|+++++|.   ++
T Consensus       165 ~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i-~~~~~~~~~-~~~~~~~-~~~~P~~i~~d~~g~---l~  238 (260)
T d1rwia_         165 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV-VKLLAGSTT-STVLPFT-GLNTPLAVAVDSDRT---VY  238 (260)
T ss_dssp             EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEE-EEECTTCSC-CEECCCC-SCCCEEEEEECTTCC---EE
T ss_pred             ccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEE-EEEeCCCCe-EEEEccC-CCCCeEEEEEeCCCC---EE
Confidence            99977543221     1556889999999988887777764 456654332 2222211 122457899999998   88


Q ss_pred             EEEeCCCcEEEEec
Q 019672          238 VATSSSGSLHVFSP  251 (337)
Q Consensus       238 as~s~dg~v~iw~l  251 (337)
                      ++-..+++|+.++.
T Consensus       239 vad~~~~rI~~i~~  252 (260)
T d1rwia_         239 VADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEGGGTEEEEECC
T ss_pred             EEECCCCEEEEEeC
Confidence            88777777766653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=3.8e-05  Score=63.29  Aligned_cols=213  Identities=13%  Similarity=0.068  Sum_probs=118.7

Q ss_pred             eEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCeEE
Q 019672           30 FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLV  108 (337)
Q Consensus        30 ~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~  108 (337)
                      +.|.|.+...... ......+..-.+.++++.++++...    .....+.+.+...+................+++++..
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE----SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECT----TSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEee----ccCcceeeeecccCceeEEeeeecccccceecCCCCe
Confidence            3455766553322 2223445556788999999998763    1245677778888776666666667778888876543


Q ss_pred             EE--E--CC--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCcccc----cCceE
Q 019672          109 IV--L--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC----EAPLA  178 (337)
Q Consensus       109 v~--~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~----~~~i~  178 (337)
                      ++  .  .+  .+..+............. ............+.. .+++........|.+.++.......    .....
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~  174 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ  174 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCC-SSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeec-ccccccccccccccc-ceecccccCCceEeeeecccccceeeeccccccc
Confidence            33  2  22  344444433333322222 111122233333222 2333222112345566665544321    15567


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEE--EEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCC---CcEEEEecCC
Q 019672          179 AIVLSSNGMYIATASEQGTIIRV--FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGF  253 (337)
Q Consensus       179 ~~~~s~dg~~lat~s~dg~~i~v--wd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~d---g~v~iw~l~~  253 (337)
                      ...++|+|+.++..+.++....+  .+...+... .+ ..  ........|||||+   +|+-.+..   ..|++++++.
T Consensus       175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~--~~~~~~p~~SPDG~---~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-SS--TFLDETPSLAPNGT---MVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-CC--SSSCEEEEECTTSS---EEEEEEEETTEEEEEEEETTS
T ss_pred             ccccccccceeEEEeecCCceeeeEeecccccce-Ee-ec--CccccceEECCCCC---EEEEEEcCCCCcEEEEEECCC
Confidence            78999999999988776533334  455544432 22 11  22345678999999   77755543   3588899876


Q ss_pred             Cc
Q 019672          254 AI  255 (337)
Q Consensus       254 ~~  255 (337)
                      ..
T Consensus       248 ~~  249 (269)
T d2hqsa1         248 RF  249 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=0.00014  Score=62.01  Aligned_cols=222  Identities=11%  Similarity=-0.004  Sum_probs=127.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-eEEEeCCCCcEEEEEe--eCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus         9 ~v~~~~fs~dg~~la~g~~~g-~~vw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      .+..++|+++|++.++-..++ +..|+.++++......  ......+.+..+.++++...++.   ...+.+...+..++
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~---~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC---ccceeEEEEcCCCc
Confidence            457899999999777665544 6667777765443321  22334455555555554332210   01344555566655


Q ss_pred             CEEEEEEcC---CceeEEEEcCCeEEEEEC---------CeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEc
Q 019672           86 TALRELNFL---TSILAVRLNKKRLVIVLR---------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (337)
Q Consensus        86 ~~~~~~~~~---~~v~~i~~~~~~~~v~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  153 (337)
                      .........   ....++.+++++.+..+|         +.+..++.... .+..+...  ......+++++++..|.++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~--~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN--ISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE--ESSEEEEEECTTSSEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeec--cceeeeeeeccccceEEEe
Confidence            544433322   245677787765444331         13444444332 22222111  1112345666777665555


Q ss_pred             CCCCccEEEEEEccCCcc-c--------cc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCc--
Q 019672          154 ASTTKGSVLVYNVMELHS-H--------CE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--  218 (337)
Q Consensus       154 ~~~~dg~v~i~d~~~~~~-~--------~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~--  218 (337)
                      .. ..+.|..||+..... .        ..    .....++++++|++.++....|. |.+|| .+|+.+.++.....  
T Consensus       195 d~-~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~-p~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         195 ET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFN-KRGYPIGQILIPGRDE  271 (319)
T ss_dssp             EG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEEC-TTSCEEEEEECTTGGG
T ss_pred             cc-cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEEC-CCCcEEEEEeCCCcCC
Confidence            43 478999998753211 0        00    23567999999998888888887 68999 47888877753221  


Q ss_pred             --ceeEEEEEeecCCCcccEEEEEeC
Q 019672          219 --PSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       219 --~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                        ...+++++|.|++.   .|.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~---~~~~t~~  294 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTN---QLIICSN  294 (319)
T ss_dssp             TCSCBCCEEEECTTSC---EEEEEEE
T ss_pred             CcCceeeeEEEeCCCC---EEEEEcC
Confidence              12478999999887   6655544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=0.00051  Score=57.09  Aligned_cols=169  Identities=11%  Similarity=0.124  Sum_probs=104.9

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-------ceeEEEEc--CCeEEEEE---CCeEEEEECCCCeeeeeecCCCCCceEEE
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-------SILAVRLN--KKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-------~v~~i~~~--~~~~~v~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (337)
                      ..+.|++||.. |+.+..+....       ....+.+.  ....+++.   .+.|..++. .++....+... .......
T Consensus        42 ~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~p~~  118 (279)
T d1q7fa_          42 NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGAT-ILQHPRG  118 (279)
T ss_dssp             GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTT-TCSCEEE
T ss_pred             CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccceeecCCC-cccccce
Confidence            36789999865 67676663211       22344442  23344443   447777775 45555555322 1223345


Q ss_pred             EeeCCCccEEEEcCCCCccEEEEEEccCCccc------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeec
Q 019672          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       141 ~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      ++.++++.++++..  ..+.+.+++.......      +......++++++|+.+++....+. |++||. +|+.+.++.
T Consensus       119 ~avd~~G~i~v~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~-V~~~d~-~G~~~~~~g  194 (279)
T d1q7fa_         119 VTVDNKGRIIVVEC--KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC-VKVFNY-EGQYLRQIG  194 (279)
T ss_dssp             EEECTTSCEEEEET--TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE-EEEEET-TCCEEEEES
T ss_pred             eccccCCcEEEEee--ccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccc-eeeeec-CCceeeeec
Confidence            56666776666655  3677888876432211      1266788999999988887777765 689996 577777763


Q ss_pred             cCCcceeEEEEEeecCCCcccEEEEEeC-CCcEEEEec
Q 019672          215 RGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSP  251 (337)
Q Consensus       215 ~~~~~~~i~~l~fs~dg~~~~~las~s~-dg~v~iw~l  251 (337)
                      ..........|++.|+|+   ++++-+. ++.|++|+.
T Consensus       195 ~~g~~~~P~giavD~~G~---i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         195 GEGITNYPIGVGINSNGE---ILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             CTTTSCSEEEEEECTTCC---EEEEECSSSCEEEEECT
T ss_pred             ccccccCCcccccccCCe---EEEEECCCCcEEEEECC
Confidence            222223467899999998   7776543 457999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.32  E-value=0.00012  Score=61.74  Aligned_cols=190  Identities=12%  Similarity=0.096  Sum_probs=111.1

Q ss_pred             EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcCCe-EEEEE--CCeEEEEECCCCe-
Q 019672           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLA-  124 (337)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~-  124 (337)
                      +.-+.+..+++++  ++.     ..+++|..||.. ++..........+.++++++++ ++++.  ++.+..++..... 
T Consensus        30 ~e~iAv~pdG~l~--vt~-----~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          30 LENLASAPDGTIF--VTN-----HEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             EEEEEECTTSCEE--EEE-----TTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             cCCEEECCCCCEE--EEe-----CCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            4445666666654  333     247889888865 4444455667788999998775 44443  5677777664321 


Q ss_pred             eeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc-------------c--cCceEEEEeCCCCCEE
Q 019672          125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-------------C--EAPLAAIVLSSNGMYI  189 (337)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~-------------~--~~~i~~~~~s~dg~~l  189 (337)
                      ....+...........+..++++.++++..  ..+.+..+|.......             .  ....+.++++.+ .++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~-~l~  178 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN-FLY  178 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT-EEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeecc--ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC-cee
Confidence            112221112223345667777787777655  3677888887654311             0  034566776543 345


Q ss_pred             EEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          190 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       190 at~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ++.+..+. |..++.....................++|++||.   ++++...++.|..++.+.
T Consensus       179 ~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~---l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         179 VSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN---LYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC---EEEECBTTCCEEEECTTC
T ss_pred             eecCCCCe-EEeccccccccccccccccCCCCCcceEECCCCC---EEEEEcCCCcEEEECCCC
Confidence            55555665 5667765543322111100112245689999999   888888889998887643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.24  E-value=0.00093  Score=56.06  Aligned_cols=213  Identities=10%  Similarity=0.048  Sum_probs=124.0

Q ss_pred             EEEEEcCCCC-EEEEEcC-CceEEEeCCCCcEEEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEE
Q 019672           11 FFVSFNQDNS-GFALSTK-DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (337)
Q Consensus        11 ~~~~fs~dg~-~la~g~~-~g~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~   88 (337)
                      -+..|++... ++.+--. ..+..||.++++...-........+.+..+.++ +++ .       .+.|.++|..+++..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l-~va-~-------~~gl~~~d~~tg~~~   91 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQ-LIA-S-------DDGLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEE-EEE-E-------TTEEEEEETTTCCEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCE-EEE-E-------eCccEEeecccceee
Confidence            3556786544 4444433 346778888876543222234444554444433 333 2       356999999998865


Q ss_pred             EEEEcCC-----ceeEEEEcCCeEE-EEE------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC
Q 019672           89 RELNFLT-----SILAVRLNKKRLV-IVL------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (337)
Q Consensus        89 ~~~~~~~-----~v~~i~~~~~~~~-v~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (337)
                      .......     .+.++.+.+++.+ +..      .+.-.+|.+..++.........   ....+..++++..+..+.. 
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---~~Ng~~~s~d~~~l~~~dt-  167 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---IPNSICFSPDGTTGYFVDT-  167 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---SEEEEEECTTSCEEEEEET-
T ss_pred             EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---CcceeeecCCCceEEEeec-
Confidence            4333221     4677788776644 333      2245666666665443332111   1234455566665555543 


Q ss_pred             CccEEEEEEccCCc--cc-----------ccCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEE
Q 019672          157 TKGSVLVYNVMELH--SH-----------CEAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  223 (337)
Q Consensus       157 ~dg~v~i~d~~~~~--~~-----------~~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~  223 (337)
                      ..+.|..|++....  ..           ..+....++++.+|++.++.-..|. |..|| .+|+.+.++....  ..++
T Consensus       168 ~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~-V~~~d-p~G~~~~~i~lP~--~~~T  243 (295)
T d2ghsa1         168 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYD-TDGNHIARYEVPG--KQTT  243 (295)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEEC-TTCCEEEEEECSC--SBEE
T ss_pred             ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc-eEEec-CCCcEeeEecCCC--CceE
Confidence            46889988874221  10           0145788999999998777666666 57899 5788888876432  2489


Q ss_pred             EEEee-cCCCcccEEEEEeC
Q 019672          224 SLSFG-QSMQFQDILVATSS  242 (337)
Q Consensus       224 ~l~fs-~dg~~~~~las~s~  242 (337)
                      +++|- ||.+  .+++|++.
T Consensus       244 ~~~FGG~d~~--~LyvTta~  261 (295)
T d2ghsa1         244 CPAFIGPDAS--RLLVTSAR  261 (295)
T ss_dssp             EEEEESTTSC--EEEEEEBC
T ss_pred             EEEEeCCCCC--EEEEEECC
Confidence            99996 7776  24444443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.06  E-value=0.0007  Score=55.57  Aligned_cols=169  Identities=6%  Similarity=0.026  Sum_probs=95.3

Q ss_pred             CceEEEEECCCCCEEE-EEEcCCceeEEEEcCCe-EEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccE
Q 019672           74 PRRLCLFNTTTGTALR-ELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~-~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (337)
                      .+.+..++........ ..........++++++. ++++.  .+.+++++-.+...+......   ....+++.++++.+
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~---~~p~~iavd~~g~i  111 (260)
T d1rwia_          35 YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL---NYPEGLAVDTQGAV  111 (260)
T ss_dssp             SCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC---CSEEEEEECTTCCE
T ss_pred             CCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee---eeccccccccccee
Confidence            4566666554332221 11112245667776654 44444  235555554444433332221   23345566666666


Q ss_pred             EEEcCCCCccEEEEEEccCCcccc-----cCceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEE
Q 019672          150 LAVPASTTKGSVLVYNVMELHSHC-----EAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  224 (337)
Q Consensus       150 la~~~~~~dg~v~i~d~~~~~~~~-----~~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~  224 (337)
                      +++-.  ....+..++........     ......++++|+|+.+++...++. |..+|....... .+... .-.....
T Consensus       112 ~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~-i~~~d~~~~~~~-~~~~~-~~~~p~g  186 (260)
T d1rwia_         112 YVADR--GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESNNQV-VLPFT-DITAPWG  186 (260)
T ss_dssp             EEEEG--GGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTE-EEEECTTTCCEE-ECCCS-SCCSEEE
T ss_pred             Eeecc--ccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccc-ccccccccceee-eeecc-ccCCCcc
Confidence            55543  35667777664433211     145678999999998888777776 578887654432 22211 1223578


Q ss_pred             EEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          225 LSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       225 l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      |+++++|.   ++++....+.|..++...
T Consensus       187 i~~d~~g~---l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         187 IAVDEAGT---VYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEECTTCC---EEEEETTTTEEEEECTTC
T ss_pred             ceeeeeee---eeeeecCCCEEEEEeCCC
Confidence            99999998   888888888888887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.03  E-value=0.0025  Score=53.28  Aligned_cols=186  Identities=9%  Similarity=-0.019  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEEcC-CeEEEEECCeEEEEECCCCeeeeeecCCCC-
Q 019672           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KRLVIVLREKTYIYDANTLAILDTIDTVPN-  134 (337)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~~~v~~d~~i~i~d~~~~~~~~~~~~~~~-  134 (337)
                      ..+.+.++..      ..++|.-||.++++. ..+..+..+.++.+.+ ..++++..+.+.++|..+++.......... 
T Consensus        28 ~~~~l~wvDi------~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~~  100 (295)
T d2ghsa1          28 ASGTAWWFNI------LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESDL  100 (295)
T ss_dssp             TTTEEEEEEG------GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTTC
T ss_pred             CCCEEEEEEC------CCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecCC
Confidence            3444555543      357899999988754 4566777888888754 457777788899999998865433222211 


Q ss_pred             -CceEEEEeeCCCccEEEEcCCC--CccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCC
Q 019672          135 -LKGLCAFSPSLNACFLAVPAST--TKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  207 (337)
Q Consensus       135 -~~~~~~~~~~~~~~~la~~~~~--~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~  207 (337)
                       ......+..++++.+.++....  ..+.-.+|.+..++....    ..-+.++|+++++.+..+......|..+++...
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccc
Confidence             2234566677777765543210  123345565555432211    556899999999976655544444667776421


Q ss_pred             --c----eeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecC
Q 019672          208 --T----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  252 (337)
Q Consensus       208 --~----~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~  252 (337)
                        .    ...-............+++..+|+   +.++.-..+.|..||-+
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn---lWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         181 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH---IWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEECTTSC---EEEEEETTTEEEEECTT
T ss_pred             ccccccceEEEeccCcccccccceEEcCCCC---EEeeeeCCCceEEecCC
Confidence              1    111111111223467899999998   77777677889999853

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=7.8e-05  Score=67.26  Aligned_cols=178  Identities=10%  Similarity=-0.012  Sum_probs=103.8

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC----ceeEEEEcCCe--EEEEEC----------CeEEEEECCCCeeeeeecCCCCCc
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT----SILAVRLNKKR--LVIVLR----------EKTYIYDANTLAILDTIDTVPNLK  136 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~----~v~~i~~~~~~--~~v~~d----------~~i~i~d~~~~~~~~~~~~~~~~~  136 (337)
                      .++.|.+||+.+++....+....    .+....+++++  +++..+          +.+.+||+.++.............
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            36789999998887644443321    56666777764  444433          478899998875432221111222


Q ss_pred             eEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccccc-----------------------CceEEEEeCCCCCEEEEEe
Q 019672          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-----------------------APLAAIVLSSNGMYIATAS  193 (337)
Q Consensus       137 ~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~~~-----------------------~~i~~~~~s~dg~~lat~s  193 (337)
                      .+....++|++..+|+..   ++.|.+.+...+...+.                       ..-.++.|||||++||...
T Consensus       115 ~l~~~~wSPDG~~iafv~---~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccceeeeccCCceEEEEe---cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            232345678888998875   67788888765443211                       1125788999999999876


Q ss_pred             CCCcE---------------------------------EEEEEcCCCceeEeec-cCC---cceeEEEEEeecCCCcccE
Q 019672          194 EQGTI---------------------------------IRVFLVSEATKSYSFR-RGT---YPSTIFSLSFGQSMQFQDI  236 (337)
Q Consensus       194 ~dg~~---------------------------------i~vwd~~~~~~~~~~~-~~~---~~~~i~~l~fs~dg~~~~~  236 (337)
                      .|-+-                                 +.|+|+.++....... ...   ...-+..+.|+||++   +
T Consensus       192 ~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~---~  268 (465)
T d1xfda1         192 INDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK---V  268 (465)
T ss_dssp             EECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE---E
T ss_pred             ecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe---E
Confidence            43221                                 2344444333211110 000   112367889999998   6


Q ss_pred             EEEEeCC----CcEEEEecCCCcc
Q 019672          237 LVATSSS----GSLHVFSPGFAIN  256 (337)
Q Consensus       237 las~s~d----g~v~iw~l~~~~~  256 (337)
                      ++...+.    ..|.++|..++..
T Consensus       269 ~~~~~nR~q~~~~i~~~d~~tg~~  292 (465)
T d1xfda1         269 AVTWLNRAQNVSILTLCDATTGVC  292 (465)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCE
T ss_pred             EEEEEccccccceEEEEcCCCCcE
Confidence            6655442    2578888776543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=0.0076  Score=49.78  Aligned_cols=215  Identities=11%  Similarity=0.151  Sum_probs=133.3

Q ss_pred             ceEEEeCCCCcE-EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcCCceeEEEE-cCCe
Q 019672           29 GFKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKR  106 (337)
Q Consensus        29 g~~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~  106 (337)
                      .+.|-|+.+... .......+..  -|.+..+.+++-++        .++.++|+++.+.++.+.++++|.--+| +++.
T Consensus        46 ~VvIidl~n~~~~~Rrpi~AdsA--IMhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis~~~  115 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPISADSA--IMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT  115 (327)
T ss_dssp             EEEEEETTSTTSCEEEECCCSEE--EECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESSSSE
T ss_pred             eEEEEECCCCCcceecccchhhh--hcCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecCCCE
Confidence            367888876543 3333333333  35577788888775        5899999999999999999999987777 7788


Q ss_pred             EEEEECCeEEEEECCCC-eeeeeecCCC--CCceEEEEeeCCCccEEEEcC-----CCCccEEEEEEccCCccc----cc
Q 019672          107 LVIVLREKTYIYDANTL-AILDTIDTVP--NLKGLCAFSPSLNACFLAVPA-----STTKGSVLVYNVMELHSH----CE  174 (337)
Q Consensus       107 ~~v~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~-----~~~dg~v~i~d~~~~~~~----~~  174 (337)
                      +.++++..|+=|++... .+.+.++.++  +...+..+..+++..+++..|     ..-.|.+++|........    |-
T Consensus       116 L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGha  195 (327)
T d1utca2         116 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA  195 (327)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSE
T ss_pred             EEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccccee
Confidence            88899999999999532 3444443332  335677888888888887665     113588899988765321    11


Q ss_pred             CceEEEEeC--CCC-CEEEEE--eCCCcEEEEEEcCCCc---e-----eEeeccC--CcceeEEEEEeecCCCcccEEEE
Q 019672          175 APLAAIVLS--SNG-MYIATA--SEQGTIIRVFLVSEAT---K-----SYSFRRG--TYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       175 ~~i~~~~~s--~dg-~~lat~--s~dg~~i~vwd~~~~~---~-----~~~~~~~--~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      +.-..+.+.  ++. +.++-+  +..|.-++|-++....   .     ...+...  ....--.+|..|+.-.   .+..
T Consensus       196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg---iiyv  272 (327)
T d1utca2         196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFL  272 (327)
T ss_dssp             EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT---EEEE
T ss_pred             eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC---EEEE
Confidence            111111111  100 122222  1222225777775421   1     1111111  0011134678887766   8888


Q ss_pred             EeCCCcEEEEecCCCcc
Q 019672          240 TSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~~  256 (337)
                      -+.-|.||+||++++..
T Consensus       273 iTK~G~i~lyDleTgt~  289 (327)
T d1utca2         273 ITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EETTSEEEEEETTTCCE
T ss_pred             EecCcEEEEEEcccccE
Confidence            89999999999998764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.0012  Score=59.09  Aligned_cols=136  Identities=9%  Similarity=0.024  Sum_probs=85.4

Q ss_pred             CCeEEEEECCCCeeeeeecCCC-CCceEEEEeeCCCccEEEEcCC-------CCccEEEEEEccCCcccc-------cCc
Q 019672          112 REKTYIYDANTLAILDTIDTVP-NLKGLCAFSPSLNACFLAVPAS-------TTKGSVLVYNVMELHSHC-------EAP  176 (337)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~-------~~dg~v~i~d~~~~~~~~-------~~~  176 (337)
                      ++.|.+||+.+++....+.... +......+..+||+.++++...       ...+.+.++|+.++....       ...
T Consensus        36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~  115 (465)
T d1xfda1          36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK  115 (465)
T ss_dssp             SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred             CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence            5688999997765432222111 1123344556677777665420       035789999998776431       145


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeE-----------------EEEEeecCCCcccEEEE
Q 019672          177 LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI-----------------FSLSFGQSMQFQDILVA  239 (337)
Q Consensus       177 i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i-----------------~~l~fs~dg~~~~~las  239 (337)
                      +....|||||+.||-.... . |.+.+..+++.++....+.. ..|                 ..+.|||||+   +||.
T Consensus       116 l~~~~wSPDG~~iafv~~~-n-l~~~~~~~~~~~~lt~~g~~-~~i~nG~~d~vyeee~~~~~~a~~WSPDgk---~iaf  189 (465)
T d1xfda1         116 LQYAGWGPKGQQLIFIFEN-N-IYYCAHVGKQAIRVVSTGKE-GVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAY  189 (465)
T ss_dssp             CSBCCBCSSTTCEEEEETT-E-EEEESSSSSCCEEEECCCBT-TTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEE
T ss_pred             cceeeeccCCceEEEEecc-e-EEEEecCCCceEEEecccCc-ceeeccccchhhhhhhccccceEEECCCCC---eEEE
Confidence            6678999999999988754 4 57888877766554433221 111                 3677999999   8888


Q ss_pred             EeCC-CcEEEEecCC
Q 019672          240 TSSS-GSLHVFSPGF  253 (337)
Q Consensus       240 ~s~d-g~v~iw~l~~  253 (337)
                      ...| ..|..+.+..
T Consensus       190 ~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         190 AAINDSRVPIMELPT  204 (465)
T ss_dssp             EEEECTTSCEEEECC
T ss_pred             EEecccccceeeccc
Confidence            7644 4577776643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.60  E-value=0.014  Score=48.87  Aligned_cols=197  Identities=11%  Similarity=0.050  Sum_probs=104.0

Q ss_pred             EEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEc-----CCceeEEEEcCC--eEEEEE-CCeEEEEECCCC
Q 019672           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-----LTSILAVRLNKK--RLVIVL-REKTYIYDANTL  123 (337)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~v~~i~~~~~--~~~v~~-d~~i~i~d~~~~  123 (337)
                      ..+..+.++++....+......+++|..||..+++.......     ......+.++++  .++++. .+.+..+|....
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSC
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCc
Confidence            344555555443322111111256899999988765433211     123467888765  355555 457888887654


Q ss_pred             eeeeeecCCCCCc---eEEEEeeCCCccEEEEcCC-------------CCccEEEEEEccCCccc-c--cCceEEEEeCC
Q 019672          124 AILDTIDTVPNLK---GLCAFSPSLNACFLAVPAS-------------TTKGSVLVYNVMELHSH-C--EAPLAAIVLSS  184 (337)
Q Consensus       124 ~~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~-------------~~dg~v~i~d~~~~~~~-~--~~~i~~~~~s~  184 (337)
                      ... .+....+..   ....+..++++.+.++...             ...|.|..++....... .  ...-+.++|+|
T Consensus       103 ~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~  181 (314)
T d1pjxa_         103 FEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRH  181 (314)
T ss_dssp             EEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEE
T ss_pred             EEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECC
Confidence            322 221111111   1223455666666555321             01344544443221111 1  13457899998


Q ss_pred             CCC-----EEEEEeCCCcEEEEEEcCCCceeE------eeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          185 NGM-----YIATASEQGTIIRVFLVSEATKSY------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       185 dg~-----~lat~s~dg~~i~vwd~~~~~~~~------~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ++.     +.++-+..+. |..||+.....+.      .+. +........|++.++|+   ++++....+.|++||.+.
T Consensus       182 d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~-~~~~~~pdGiavD~~Gn---lyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         182 MNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNN---LLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             CTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCC---EEEEEETTTEEEEECTTC
T ss_pred             CCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEcc-ccccccceeeEEecCCc---EEEEEcCCCEEEEEeCCC
Confidence            765     4444455555 5677765432222      121 11122356799999999   788888889999998664


Q ss_pred             C
Q 019672          254 A  254 (337)
Q Consensus       254 ~  254 (337)
                      .
T Consensus       257 g  257 (314)
T d1pjxa_         257 G  257 (314)
T ss_dssp             B
T ss_pred             C
Confidence            4

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.52  E-value=0.0048  Score=53.70  Aligned_cols=142  Identities=11%  Similarity=0.091  Sum_probs=85.5

Q ss_pred             eEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEee--CCCccEEEEcCCC----------------CccEEEEEE
Q 019672          106 RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSP--SLNACFLAVPAST----------------TKGSVLVYN  165 (337)
Q Consensus       106 ~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~la~~~~~----------------~dg~v~i~d  165 (337)
                      .+++..  +++|.+-|+.+++..+.+.. ++..+.-.+++  .|+..+++..+..                ..+.+.++|
T Consensus       101 ylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID  179 (459)
T d1fwxa2         101 FLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  179 (459)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred             EEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence            344444  56899999999987655433 34444444443  4555666654410                114567889


Q ss_pred             ccCCccccc----CceEEEEeCCCCCEEEEEeCCCc--------------EEEEEEc-----------------------
Q 019672          166 VMELHSHCE----APLAAIVLSSNGMYIATASEQGT--------------IIRVFLV-----------------------  204 (337)
Q Consensus       166 ~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~--------------~i~vwd~-----------------------  204 (337)
                      ..+++...+    .....++++|||+++++.|.+..              .+.++++                       
T Consensus       180 ~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~  259 (459)
T d1fwxa2         180 ADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDG  259 (459)
T ss_dssp             TTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEEC
T ss_pred             cCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecc
Confidence            888776543    56778999999999998874310              1223333                       


Q ss_pred             CCC---ceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCC
Q 019672          205 SEA---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  253 (337)
Q Consensus       205 ~~~---~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~  253 (337)
                      ++.   ..+..+..+   ...+.+.+||||++  .++++..+.+|.|+|+++
T Consensus       260 ~~~~~~~v~~yIPVp---KsPHGV~vSPDGKy--i~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         260 RKEASSLFTRYIPIA---NNPHGCNMAPDKKH--LCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SGG--CSSEEEEEEE---SSCCCEEECTTSSE--EEEECTTSSBEEEEEGGG
T ss_pred             cccCCcceeEEEecC---CCCCceEECCCCCE--EEEeCCcCCcEEEEEehh
Confidence            211   011111111   11346799999994  556666778999999974

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.35  E-value=0.032  Score=46.74  Aligned_cols=175  Identities=13%  Similarity=0.087  Sum_probs=100.5

Q ss_pred             CCceEEEEECCCCCEEEEE-EcCCceeEEEEcCCe-EEEEE------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeC
Q 019672           73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKR-LVIVL------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~-~~v~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
                      ..++|.-||..+++..... ........+++++++ ++++.      .+.+...+.....................+..+
T Consensus        59 ~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d  138 (319)
T d2dg1a1          59 FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD  138 (319)
T ss_dssp             TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEE
Confidence            4678988998877654433 334467888998764 44544      124555555554443333322222334455666


Q ss_pred             CCccEEEEcCCC----CccEEEEEEccCCcc--ccc--CceEEEEeCCCCCEEEEE-eCCCcEEEEEEcCC-CceeEeec
Q 019672          145 LNACFLAVPAST----TKGSVLVYNVMELHS--HCE--APLAAIVLSSNGMYIATA-SEQGTIIRVFLVSE-ATKSYSFR  214 (337)
Q Consensus       145 ~~~~~la~~~~~----~dg~v~i~d~~~~~~--~~~--~~i~~~~~s~dg~~lat~-s~dg~~i~vwd~~~-~~~~~~~~  214 (337)
                      +++.+.++....    ..+.+..++......  +..  ...+.++|+|||+.|..+ +..++ |..||+.. +.......
T Consensus       139 ~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~-I~~~d~~~~g~~~~~~~  217 (319)
T d2dg1a1         139 SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFG  217 (319)
T ss_dssp             TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEE
T ss_pred             eccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCc-eEEEEEcCCCceecccc
Confidence            777665543210    123455555433221  111  456889999999876555 44555 67888753 22221110


Q ss_pred             -----cCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEec
Q 019672          215 -----RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  251 (337)
Q Consensus       215 -----~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l  251 (337)
                           ..........|++.++|+   +.++....+.|.+|+-
T Consensus       218 ~~~~~~~~~~~~PdGl~vD~~G~---l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         218 ATIPYYFTGHEGPDSCCIDSDDN---LYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEEECCSSSEEEEEEEBTTCC---EEEEEETTTEEEEECT
T ss_pred             ceeeeccCCccceeeeeEcCCCC---EEEEEcCCCEEEEECC
Confidence                 000011246799999999   8888888999999994

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.30  E-value=0.0097  Score=48.16  Aligned_cols=228  Identities=11%  Similarity=0.042  Sum_probs=109.7

Q ss_pred             EEcCC--CCEEEEEcCCceEEEeCCCCcEEE-EEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEE
Q 019672           14 SFNQD--NSGFALSTKDGFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (337)
Q Consensus        14 ~fs~d--g~~la~g~~~g~~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~   90 (337)
                      ..+||  |+.+|-.+++.+.++|+.+++... ...........+.+++..++++..... ......|.+.+..+++...-
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~-~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS-SLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST-TCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC-CCCceEEEEEEecCCceEEe
Confidence            45799  999886666667777999886542 222234455678888999988753100 00123577778877764432


Q ss_pred             EEcC-------CceeEEEEcCCeEEEEE---------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcC
Q 019672           91 LNFL-------TSILAVRLNKKRLVIVL---------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (337)
Q Consensus        91 ~~~~-------~~v~~i~~~~~~~~v~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  154 (337)
                      ....       .......+++++-.++.         ...+...+...+........   ... ..+ ..+.+..++...
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-~~~~~~~~~~~~  158 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PAT-HIL-FADGRRVIGRNT  158 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCS-EEE-EETTEEEEEESC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC---ccc-eee-ecCCCeEEEeec
Confidence            1111       12345567665533322         11344555544433222111   111 111 122233333322


Q ss_pred             CCC---------ccEEEEEEccCCccc----ccCceEEEEeCCCCCEEEEEeCCC-cEEEEEEcCCCceeEeeccCCcce
Q 019672          155 STT---------KGSVLVYNVMELHSH----CEAPLAAIVLSSNGMYIATASEQG-TIIRVFLVSEATKSYSFRRGTYPS  220 (337)
Q Consensus       155 ~~~---------dg~v~i~d~~~~~~~----~~~~i~~~~~s~dg~~lat~s~dg-~~i~vwd~~~~~~~~~~~~~~~~~  220 (337)
                      ...         .....+.........    .........++++. .+.....++ .-|.++|+.+++.. .+.... ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~-~~  235 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFT-DY  235 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCC-SS
T ss_pred             cccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCC-Cc
Confidence            100         001111111111111    11334444555553 222232332 23567787766543 332221 12


Q ss_pred             eEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          221 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       221 ~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      .+  ..|||||+   .|+-. .++.|+++|+++++.
T Consensus       236 ~~--~~~SpDG~---~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         236 YP--RHLNTDGR---RILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             CE--EEEEESSS---CEEEE-ETTEEEEECTTTCCE
T ss_pred             cc--ccCcCCCC---EEEEE-eCCEEEEEECCCCCE
Confidence            23  36899999   66654 467899999877654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.12  E-value=0.001  Score=54.45  Aligned_cols=90  Identities=6%  Similarity=-0.076  Sum_probs=58.8

Q ss_pred             ccEEEEcCCCCccEEEEEEccCCcccc----cCceEEEEeCCCCCEEEEEeC-CC----cEEEEEEcCCCceeEeeccCC
Q 019672          147 ACFLAVPASTTKGSVLVYNVMELHSHC----EAPLAAIVLSSNGMYIATASE-QG----TIIRVFLVSEATKSYSFRRGT  217 (337)
Q Consensus       147 ~~~la~~~~~~dg~v~i~d~~~~~~~~----~~~i~~~~~s~dg~~lat~s~-dg----~~i~vwd~~~~~~~~~~~~~~  217 (337)
                      +..+|+..   +|.|.+.|+..++...    .+.+...+|||||++||-.+. ++    ..|.+.+..+++...-.....
T Consensus        12 G~~v~f~~---~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~   88 (281)
T d1k32a2          12 GDRIIFVC---CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG   88 (281)
T ss_dssp             TTEEEEEE---TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred             CCEEEEEe---CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence            56777765   5779999998776432    266888999999999996543 22    125677887776543211110


Q ss_pred             ----cceeEEEEEeecCCCcccEEEEEeC
Q 019672          218 ----YPSTIFSLSFGQSMQFQDILVATSS  242 (337)
Q Consensus       218 ----~~~~i~~l~fs~dg~~~~~las~s~  242 (337)
                          ........+|+|||+   .|+....
T Consensus        89 ~~~~~~~~~~~~~~spdg~---~l~~~~~  114 (281)
T d1k32a2          89 KSTGRRMFTDVAGFDPDGN---LIISTDA  114 (281)
T ss_dssp             EEETTEECSEEEEECTTCC---EEEEECT
T ss_pred             CccCccccccccccCCCCC---EEEEEEc
Confidence                011245788999999   7776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.09  E-value=0.1  Score=47.47  Aligned_cols=59  Identities=15%  Similarity=0.120  Sum_probs=40.3

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-----cee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecC
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDT  131 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-----~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~  131 (337)
                      .|+.|.-.|.++|+.+.......     .++ .-.+..+.+++..       .+.|+-+|+.+++.+..+.+
T Consensus       123 ~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         123 ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            47899999999999887665321     111 1123356666654       56899999999999876644

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.96  E-value=0.13  Score=46.70  Aligned_cols=135  Identities=10%  Similarity=0.036  Sum_probs=80.1

Q ss_pred             CeEEEEECCCCeeeeeecCCCC---------CceEEEEeeCCCcc-EEEEcCCCCccEEEEEEccCCccccc--------
Q 019672          113 EKTYIYDANTLAILDTIDTVPN---------LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCE--------  174 (337)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~la~~~~~~dg~v~i~d~~~~~~~~~--------  174 (337)
                      +.+.-.|+++++.+..++...+         +..+..+..++... .++..+  .+|.+.++|..+++.+..        
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~  349 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCccc
Confidence            3677789999988776654322         11222333333222 344555  479999999887764310        


Q ss_pred             ----------Cce--------------------------EEEEeCCCCCEEEEEeCC-----------------------
Q 019672          175 ----------APL--------------------------AAIVLSSNGMYIATASEQ-----------------------  195 (337)
Q Consensus       175 ----------~~i--------------------------~~~~~s~dg~~lat~s~d-----------------------  195 (337)
                                .++                          ...+++|+..++.....+                       
T Consensus       350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (571)
T d2ad6a1         350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence                      000                          136778877776654433                       


Q ss_pred             --------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          196 --------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       196 --------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                                    |. |.-+|+.+|+.+.+...+...   .+=..+-.+.   ++++|+.||.++-+|.+++++
T Consensus       430 ~~~~~~~~~~~~~~G~-l~AiD~~TG~~~W~~~~~~~~---~~g~l~Tagg---lVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         430 AMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEKFAA---WGGTLYTKGG---LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEESSCC---CSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eeccccCCcccCCccc-EEEeccCCCceeeEcCCCCCC---CcceeEecCC---EEEEECCCCeEEEEECCCCcE
Confidence                          23 456788888887766433211   1001122344   788899999999999988765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.94  E-value=0.14  Score=46.55  Aligned_cols=52  Identities=6%  Similarity=0.065  Sum_probs=35.3

Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +.-||+.+|+.+.+.+.+..   ...=..+-.|.   ++++|+.||.++.||.+++++
T Consensus       459 l~AiD~~tGk~~W~~~~~~p---~~gg~lstagg---lVF~G~~dg~l~A~Da~TGe~  510 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGN---VVFQGTADGRLVAYHAATGEK  510 (573)
T ss_dssp             EEEEETTTTEEEEEEEESSS---CCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEeCCCCCceEeeecCCCC---CCCceEEEcCC---EEEEECCCCeEEEEECCCCcE
Confidence            45688888888777653321   11111233566   888999999999999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.71  E-value=0.17  Score=45.80  Aligned_cols=107  Identities=18%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCceEEEeCCCCcEEEEEeeCC-----------EEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           18 DNSGFALSTKDGFKIFDSSTGRLCYERAVGA-----------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        18 dg~~la~g~~~g~~vw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      +|..+++...+.+.-+|.++|+++...+...           ..........+.+.+.+       .|+.+.-.|.++|+
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-------~~g~l~alda~tG~  149 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGRLIALDAATGK  149 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-------cccceeeecccccc
Confidence            4443433334446788999999887653110           00000111122333333       37889888999999


Q ss_pred             EEEEEEcCC----ce--e-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecC
Q 019672           87 ALRELNFLT----SI--L-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDT  131 (337)
Q Consensus        87 ~~~~~~~~~----~v--~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~  131 (337)
                      .+-+.....    .+  . .-.+..+.+++..       .+.|+-+|.++++++..+.+
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             ceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            887664321    11  1 0112345555533       35799999999999877644

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.91  E-value=0.56  Score=42.13  Aligned_cols=226  Identities=10%  Similarity=0.099  Sum_probs=125.5

Q ss_pred             EEEEEcCCc-eEEEeCCCCcEEEEEeeCCE-EEEEEcc----CCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEEEcC
Q 019672           21 GFALSTKDG-FKIFDSSTGRLCYERAVGAF-SIVEMLY----SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (337)
Q Consensus        21 ~la~g~~~g-~~vw~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~~~~   94 (337)
                      .+..++.++ +.-.|..+|+++........ .......    ..+. ++++.........+.|.-+|.++|+.+-++...
T Consensus       119 ~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCc-ccccccceeccccceEEEEECCCceEEeeeeec
Confidence            455566555 56678888888766542110 0000000    0122 233322111123578999999999999876421


Q ss_pred             -------------------------------Ccee-EEEEcC--CeEEEEE--------------------CCeEEEEEC
Q 019672           95 -------------------------------TSIL-AVRLNK--KRLVIVL--------------------REKTYIYDA  120 (337)
Q Consensus        95 -------------------------------~~v~-~i~~~~--~~~~v~~--------------------d~~i~i~d~  120 (337)
                                                     ..+. .+.+++  +.+++.+                    .+.|.-.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~  277 (560)
T d1kv9a2         198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (560)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             cccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecC
Confidence                                           0111 122222  2333321                    135777788


Q ss_pred             CCCeeeeeecCCCC---------CceEEEEeeCCCc-cEEEEcCCCCccEEEEEEccCCccccc----------------
Q 019672          121 NTLAILDTIDTVPN---------LKGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCE----------------  174 (337)
Q Consensus       121 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~la~~~~~~dg~v~i~d~~~~~~~~~----------------  174 (337)
                      ++++....++...+         ...+..+..++.. ..++.++  .+|.+.++|..+++.+..                
T Consensus       278 ~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~--k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~  355 (560)
T d1kv9a2         278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP--KNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (560)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             CccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecC--ccceEEEEecCCCcccccccccccccccccChhh
Confidence            89887765543322         1122333433332 2444454  489999999888775421                


Q ss_pred             -------------------------CceEEEEeCCCCCEEEEEeCC----------------------------------
Q 019672          175 -------------------------APLAAIVLSSNGMYIATASEQ----------------------------------  195 (337)
Q Consensus       175 -------------------------~~i~~~~~s~dg~~lat~s~d----------------------------------  195 (337)
                                               ..-...+++|+..++...+.+                                  
T Consensus       356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  435 (560)
T d1kv9a2         356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (560)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence                                     001245678887776655432                                  


Q ss_pred             --CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          196 --GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       196 --g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                        |. |.-||+.+|+.+.++..+...   .+=.++-.|.   ++++|+.||.++.+|.++++.
T Consensus       436 ~~G~-l~A~D~~tGk~~W~~~~~~~~---~gg~l~Tagg---lVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         436 VSGA-LLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGN---LVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             CEEE-EEEEETTTTEEEEEEEESSSC---CCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             cccc-eEEEeCCCCeEeeeccCCCCC---CCceeEECCC---EEEEECCCCcEEEEECCCCcE
Confidence              33 457899999988776543221   1112233455   888999999999999998865

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.82  E-value=0.64  Score=42.10  Aligned_cols=52  Identities=6%  Similarity=0.050  Sum_probs=34.7

Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      +.-||..+|+.+.+.....   ++.+=..+-.|.   +++.|+.||.++.+|.++++.
T Consensus       455 l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagg---lVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKMERF---AVWGGTMATAGD---LVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEeCCCCceecccCCCC---CCccceeEecCC---EEEEECCCCeEEEEECCCCcE
Confidence            4678888888776553221   111112233566   788899999999999998865

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.41  Score=39.15  Aligned_cols=217  Identities=12%  Similarity=0.151  Sum_probs=123.5

Q ss_pred             EEEEcCCCCEEEEEcCCceEEEeCCCCcEEEEEee-CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC-CEEE
Q 019672           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALR   89 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~g~~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~-~~~~   89 (337)
                      +.--+|....||.-+...+.|||+++.+.+-.... .++....+. +.+.+++++.        ..|.-|+++.. .+.+
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi-s~~~L~lVT~--------taVYHW~~~g~s~P~k  137 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTD--------NAVYHWSMEGESQPVK  137 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES-SSSEEEEECS--------SEEEEEESSSSCCCEE
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec-CCCEEEEEcC--------CceEEEcccCCCCchh
Confidence            34457888888877766789999999988766654 445444554 5677888874        68999998543 3444


Q ss_pred             EEEcC-----CceeEEEEcCCeEEE--EE--------CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCC---CccEEE
Q 019672           90 ELNFL-----TSILAVRLNKKRLVI--VL--------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL---NACFLA  151 (337)
Q Consensus        90 ~~~~~-----~~v~~i~~~~~~~~v--~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~la  151 (337)
                      -++-+     ..|..-..+++.-.+  .+        .|.+.+|..+... -+.++.|..  .-..+...+   +..+++
T Consensus       138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa--~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA--SFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEE--EEEEECCTTCSSCEEEEE
T ss_pred             hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccceee--eeEEEEcCCCCCCceEEE
Confidence            44332     245555566554222  11        3578899987542 233433211  001111110   112333


Q ss_pred             EcCC-CCccEEEEEEccCCccc---c-c-------------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEee
Q 019672          152 VPAS-TTKGSVLVYNVMELHSH---C-E-------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  213 (337)
Q Consensus       152 ~~~~-~~dg~v~i~d~~~~~~~---~-~-------------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~  213 (337)
                      ++.. ...+.++|.++.+....   . +             .---++.+|+.-..+..-+.-|- |.++|++++.+++.-
T Consensus       215 fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~-i~lyDleTgt~i~~n  293 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcE-EEEEEcccccEEEEe
Confidence            2211 03478999988653211   0 0             22456777776667777778885 799999999998765


Q ss_pred             ccCCcceeEEEEEeecCCCcccEEEEEeCCCcE
Q 019672          214 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  246 (337)
Q Consensus       214 ~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v  246 (337)
                      +-.  ...|..-+-+.+..   =+++-..+|.|
T Consensus       294 RIs--~~~iF~~a~~~~~~---Gi~~VNr~GqV  321 (327)
T d1utca2         294 RIS--GETIFVTAPHEATA---GIIGVNRKGQV  321 (327)
T ss_dssp             ECC--SSCEEEEEEETTTT---EEEEEETTSEE
T ss_pred             ecC--CCceEEeccCCCCc---eEEEECCCCeE
Confidence            432  23454334343322   23333355654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.71  E-value=0.47  Score=39.76  Aligned_cols=75  Identities=9%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             EEEEcCCCCEEEEEcCC--ceEEEeCCCCcEEEEEee---CCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCC
Q 019672           12 FVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (337)
Q Consensus        12 ~~~fs~dg~~la~g~~~--g~~vw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~   86 (337)
                      ...+.+||..++.|..+  .+.+||..+..-......   +.........+...++ +++.......-+.+.+||..+++
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v-~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceee-eccccccccccceeeeecCCCCc
Confidence            45788999999988654  468999877643221111   1111223344444443 44432222234679999998876


Q ss_pred             E
Q 019672           87 A   87 (337)
Q Consensus        87 ~   87 (337)
                      -
T Consensus       159 W  159 (387)
T d1k3ia3         159 W  159 (387)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.39  E-value=0.92  Score=41.01  Aligned_cols=139  Identities=9%  Similarity=0.049  Sum_probs=82.0

Q ss_pred             CCceEEEEECCCCCEEEEEEcCC-----cee-EEEEcCCeEEEEE-------CCeEEEEECCCCeeeeeecCCCCC----
Q 019672           73 SPRRLCLFNTTTGTALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNL----  135 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~~~-----~v~-~i~~~~~~~~v~~-------d~~i~i~d~~~~~~~~~~~~~~~~----  135 (337)
                      .|+.|.-.|.++|+++..+....     .++ .-.+..+.+++..       .+.|+-||+.+++++.++.+.+..    
T Consensus       129 ~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~  208 (596)
T d1w6sa_         129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (596)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccc
Confidence            48899999999999988775321     111 1123456666653       378999999999998776432210    


Q ss_pred             --------------------------------ceEEEEeeCCCccEEEEcCCC--------------CccEEEEEEccCC
Q 019672          136 --------------------------------KGLCAFSPSLNACFLAVPAST--------------TKGSVLVYNVMEL  169 (337)
Q Consensus       136 --------------------------------~~~~~~~~~~~~~~la~~~~~--------------~dg~v~i~d~~~~  169 (337)
                                                      ..-...+.++...++..+...              ....|.-.|+.++
T Consensus       209 ~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG  288 (596)
T d1w6sa_         209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG  288 (596)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred             cccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccc
Confidence                                            000112223333333332110              1345777888888


Q ss_pred             cccc-------c-------CceEEEE-eCCCCC---EEEEEeCCCcEEEEEEcCCCceeEe
Q 019672          170 HSHC-------E-------APLAAIV-LSSNGM---YIATASEQGTIIRVFLVSEATKSYS  212 (337)
Q Consensus       170 ~~~~-------~-------~~i~~~~-~s~dg~---~lat~s~dg~~i~vwd~~~~~~~~~  212 (337)
                      +..-       .       .++..+. ...+|+   .++.+..+|. +.++|-.+|+.+..
T Consensus       289 ~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~-~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSA  348 (596)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEE
T ss_pred             cccccccceeccccCCccccceeeeeccccccccccceeccccccc-eeeecCCCCceeee
Confidence            7541       1       2222222 244554   5777888886 57999999998753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.95  E-value=0.95  Score=40.77  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             cEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcc
Q 019672          159 GSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  234 (337)
Q Consensus       159 g~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~  234 (337)
                      |.|.-+|+.+++..-+    .++..=.++-.|.++.+|+.||. +|-+|.++|+.+.+++.+..... .=+.|..||+  
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~~~~-~P~ty~~~G~--  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSGIVS-PPITWEQDGE--  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCS-CCEEEEETTE--
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCCccc-cCEEEEECCE--
Confidence            6777888888876532    33332223346778888999997 69999999999998865432111 1156778885  


Q ss_pred             cEEEEEe
Q 019672          235 DILVATS  241 (337)
Q Consensus       235 ~~las~s  241 (337)
                      -|++..+
T Consensus       542 qYv~i~a  548 (582)
T d1flga_         542 QYLGVTV  548 (582)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            2666544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.8  Score=36.59  Aligned_cols=222  Identities=5%  Similarity=-0.042  Sum_probs=121.1

Q ss_pred             CCEEEEEcCCceEEEeCCCCcE-------EEEEeeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCEEEEE
Q 019672           19 NSGFALSTKDGFKIFDSSTGRL-------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (337)
Q Consensus        19 g~~la~g~~~g~~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~~~~~   91 (337)
                      |++|.-+..+.++-.+++....       ........+..+++.+..+.+..+..      ..+.|...++..+.....+
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~------~~~~I~~~~l~g~~~~~v~   74 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTII   74 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEEC------CCCeEEEEEcccCCcEEEE
Confidence            4566666666665555544321       11111122233455556676666554      4778888888765544333


Q ss_pred             EcC-CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCC-CccEEEEEE
Q 019672           92 NFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYN  165 (337)
Q Consensus        92 ~~~-~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~dg~v~i~d  165 (337)
                      ... ..+.+++++  .+.++++.  .+.|.+.++........+...  ......+..+|...++...... ..+.|.--+
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc--ccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            322 356777775  56777765  568999998755332222221  1223445556655555544210 123344445


Q ss_pred             ccCCcc--c-cc--CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEE
Q 019672          166 VMELHS--H-CE--APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  239 (337)
Q Consensus       166 ~~~~~~--~-~~--~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las  239 (337)
                      +.....  . ..  ...+.+++++.++.|.-+. ..++ |...|+..... ..+..+. . ...+|++. ++.   ++.+
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~-I~~~~~~g~~~-~~v~~~~-~-~P~~lav~-~~~---lYwt  224 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGR-RKVLEGL-Q-YPFAVTSY-GKN---LYYT  224 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEE-EEEEECC-C-SEEEEEEE-TTE---EEEE
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCE-EEEEECCCCCe-EEEECCC-C-CcEEEEEE-CCE---EEEE
Confidence            543221  1 11  5568999998888776554 4444 67788865443 2332222 1 23577776 444   5566


Q ss_pred             EeCCCcEEEEecCCCcc
Q 019672          240 TSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       240 ~s~dg~v~iw~l~~~~~  256 (337)
                      -...+.|...|..+++.
T Consensus       225 d~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         225 DWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             ETTTTEEEEEETTTTEE
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            56778888888766543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.64  E-value=0.76  Score=38.34  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeec-CCC
Q 019672          175 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-SMQ  232 (337)
Q Consensus       175 ~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~-dg~  232 (337)
                      ..-+.|+++||+++|..+..-+..|++|++.....+.......-+...-.+.+.+ +|.
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~  264 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD  264 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence            5689999999999887776555457889887543322211101122355677765 454

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.57  E-value=1.5  Score=39.21  Aligned_cols=82  Identities=10%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             ccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCc
Q 019672          158 KGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  233 (337)
Q Consensus       158 dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~  233 (337)
                      .|.+.-||+.+++..-+    .+...=.+.-.|.++.+|+.||. +|-+|..+|+.+.+++.+..... .=+.|..||+ 
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~-l~A~Da~tGe~LW~~~l~~~~~~-~P~ty~~dGk-  513 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQSGIVA-APMTFELAGR-  513 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCS-CCEEEEETTE-
T ss_pred             ccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCc-EEEEECCCCcEeEEEECCCCccc-cCEEEEECCE-
Confidence            47788899999886533    22222222334668888999997 69999999999998875432111 1146667885 


Q ss_pred             ccEEEEEeCC
Q 019672          234 QDILVATSSS  243 (337)
Q Consensus       234 ~~~las~s~d  243 (337)
                       -|+++.+..
T Consensus       514 -qyv~v~aG~  522 (560)
T d1kv9a2         514 -QYVAIMAGW  522 (560)
T ss_dssp             -EEEEEEECC
T ss_pred             -EEEEEEeCC
Confidence             266665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.81  E-value=1.8  Score=37.19  Aligned_cols=173  Identities=10%  Similarity=0.042  Sum_probs=100.4

Q ss_pred             CCceEEEEECCCCCEEEEEEc--CCceeEEEEc--CCeEEE--EEC-------------------CeEEEEECCCCeeee
Q 019672           73 SPRRLCLFNTTTGTALRELNF--LTSILAVRLN--KKRLVI--VLR-------------------EKTYIYDANTLAILD  127 (337)
Q Consensus        73 ~d~~v~iwd~~~~~~~~~~~~--~~~v~~i~~~--~~~~~v--~~d-------------------~~i~i~d~~~~~~~~  127 (337)
                      .+++|.+-|+++.+....++.  .+.+..+...  ++...|  ...                   +.+.+.|..+++...
T Consensus       108 an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~  187 (459)
T d1fwxa2         108 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  187 (459)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEE
T ss_pred             CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEE
Confidence            578999999998887554433  3456655543  333222  222                   235678999998888


Q ss_pred             eecCCCCCceEEEEeeCCCccEEEEcCCCCc-------------cEEEEEE-----------------------ccCCc-
Q 019672          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTK-------------GSVLVYN-----------------------VMELH-  170 (337)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d-------------g~v~i~d-----------------------~~~~~-  170 (337)
                      ++....++.. +  ..++++.++++.+..++             ..+.+++                       ..... 
T Consensus       188 QV~V~g~ld~-~--~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~  264 (459)
T d1fwxa2         188 QVLVSGNLDN-C--DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS  264 (459)
T ss_dssp             EEEESSCCCC-E--EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--
T ss_pred             EeeeCCChhc-c--ccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCC
Confidence            8766554433 2  34455667666542111             1233333                       32210 


Q ss_pred             --cccc----CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCcee------------EeeccCCcceeEEEEEeecCCC
Q 019672          171 --SHCE----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS------------YSFRRGTYPSTIFSLSFGQSMQ  232 (337)
Q Consensus       171 --~~~~----~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~------------~~~~~~~~~~~i~~l~fs~dg~  232 (337)
                        ....    .....+.++|||+++++++.-...+-|+|++.-..+            .+...+  -.+ ..-+|+..|.
T Consensus       265 ~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg--lgP-Lht~fd~~g~  341 (459)
T d1fwxa2         265 SLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--LGP-LHTAFDGRGN  341 (459)
T ss_dssp             CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC--SCE-EEEEECTTSE
T ss_pred             cceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC--cCc-cccccCCCce
Confidence              0000    345678999999998887754434689998632211            111111  123 3458988886


Q ss_pred             cccEEEEEeCCCcEEEEecCCC
Q 019672          233 FQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       233 ~~~~las~s~dg~v~iw~l~~~  254 (337)
                         -..+-=-|..|--|++...
T Consensus       342 ---aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         342 ---AYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             ---EEEEETTTTEEEEEEHHHH
T ss_pred             ---EEEEeeccceEEEEecchh
Confidence               5666668899999998643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.47  E-value=0.23  Score=41.81  Aligned_cols=91  Identities=11%  Similarity=-0.022  Sum_probs=59.2

Q ss_pred             EEEEEEccCCccccc--------CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCC
Q 019672          160 SVLVYNVMELHSHCE--------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  231 (337)
Q Consensus       160 ~v~i~d~~~~~~~~~--------~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg  231 (337)
                      .+.+||..+.+-...        ......++.+||+.++.|+.++..+.+||..+.+-.. +........-.+++..+||
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccc-cccccccccccceeeecCC
Confidence            367899887653211        2234668899999999998776557899998765422 2111111112346777899


Q ss_pred             CcccEEEEEeCC------CcEEEEecCCC
Q 019672          232 QFQDILVATSSS------GSLHVFSPGFA  254 (337)
Q Consensus       232 ~~~~~las~s~d------g~v~iw~l~~~  254 (337)
                      +   +++.|+.+      ..+.+||..+.
T Consensus       132 ~---v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 R---VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             C---EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             c---eeeeccccccccccceeeeecCCCC
Confidence            9   88888753      36899998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.37  E-value=1.8  Score=35.92  Aligned_cols=137  Identities=15%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             CCeEEEEECCCCeee-eee--c-CC-----CCCceEEEEeeCCCcc-EEEEcCC-CCccEEEEEEccCCc--cccc----
Q 019672          112 REKTYIYDANTLAIL-DTI--D-TV-----PNLKGLCAFSPSLNAC-FLAVPAS-TTKGSVLVYNVMELH--SHCE----  174 (337)
Q Consensus       112 d~~i~i~d~~~~~~~-~~~--~-~~-----~~~~~~~~~~~~~~~~-~la~~~~-~~dg~v~i~d~~~~~--~~~~----  174 (337)
                      .|.|.++|+.+.+.. ..+  . ..     .+|.++- +...+++. +|++... ....+|.+|++....  ..+.    
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~-l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~  145 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS-TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  145 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEE-EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceecccee-EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecC
Confidence            378999998765321 111  1 11     2344543 22233443 3443321 135678898875432  2221    


Q ss_pred             ----CceEEEEeCCCCCEEEEEe--CC-------------CcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCccc
Q 019672          175 ----APLAAIVLSSNGMYIATAS--EQ-------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  235 (337)
Q Consensus       175 ----~~i~~~~~s~dg~~lat~s--~d-------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~  235 (337)
                          ...+.|++..+|.+++|-.  ..             ++ ..+|....++.. ....+  -.--+.|+++||+++  
T Consensus       146 ~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~-g~v~~~~~~~~~-~~~~~--l~~pNGI~~s~d~~~--  219 (340)
T d1v04a_         146 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW-SFVTYYSPNDVR-VVAEG--FDFANGINISPDGKY--  219 (340)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC-EEEEEECSSCEE-EEEEE--ESSEEEEEECTTSSE--
T ss_pred             CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc-eeEEEEcCCceE-EEcCC--CCccceeEECCCCCE--
Confidence                5579999999999888831  10             12 234444443322 22111  123578999999982  


Q ss_pred             EEEEEeCCCcEEEEecCCCc
Q 019672          236 ILVATSSSGSLHVFSPGFAI  255 (337)
Q Consensus       236 ~las~s~dg~v~iw~l~~~~  255 (337)
                      ++++-+..+.|++|+++...
T Consensus       220 lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         220 VYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEEEGGGTEEEEEEECTTS
T ss_pred             EEEEeCCCCeEEEEEeCCCc
Confidence            55666777889999987543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=1.7  Score=34.51  Aligned_cols=224  Identities=7%  Similarity=-0.035  Sum_probs=117.3

Q ss_pred             EEEEEcCCceEEEeCCCCcEEEEE-eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCCCE---EEE-EEc-C
Q 019672           21 GFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA---LRE-LNF-L   94 (337)
Q Consensus        21 ~la~g~~~g~~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~~~---~~~-~~~-~   94 (337)
                      +|..+....++..++++.....-. .......+++.+..+.+..+..      ..+.|.--++.....   ... +.. .
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~------~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEEC------CCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            455555566777787765432211 2233444455555666665543      356666655542211   111 111 1


Q ss_pred             CceeEEEEc--CCeEEEEE--CCeEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCc
Q 019672           95 TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (337)
Q Consensus        95 ~~v~~i~~~--~~~~~v~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~  170 (337)
                      ..+.+++++  .+.++++.  .++|.+.++........+....+  ...++..+|...++........+.|.-.++....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~--~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC--CcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence            245556664  67777766  56899999976544333332211  2334455554445544332134566666665332


Q ss_pred             c--c-cc--CceEEEEeCCCCCEEEEEeCCCcEEEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCc
Q 019672          171 S--H-CE--APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  245 (337)
Q Consensus       171 ~--~-~~--~~i~~~~~s~dg~~lat~s~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~  245 (337)
                      .  . ..  ...+.+++++.++.|.-+......|...|+........+..........+|++. ++.   ++.+-..++.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~---ly~td~~~~~  230 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK---VFWTDIINEA  230 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE---EEEEETTTTE
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCE---EEEEECCCCe
Confidence            2  1 11  457899999988877766443334677787544332222111112235677777 344   5666667788


Q ss_pred             EEEEecCCCcc
Q 019672          246 LHVFSPGFAIN  256 (337)
Q Consensus       246 v~iw~l~~~~~  256 (337)
                      |+-.+..++.+
T Consensus       231 I~~~~~~~g~~  241 (266)
T d1ijqa1         231 IFSANRLTGSD  241 (266)
T ss_dssp             EEEEETTTCCC
T ss_pred             EEEEECCCCcc
Confidence            87777655443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.76  E-value=3.2  Score=37.10  Aligned_cols=52  Identities=6%  Similarity=0.164  Sum_probs=36.9

Q ss_pred             EEEEEcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEEeCCCcEEEEecCCCcc
Q 019672          199 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  256 (337)
Q Consensus       199 i~vwd~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~dg~v~iw~l~~~~~  256 (337)
                      |.-+|+.+|+.+.+++.+.   ++.+=..+-.|.   ++++|+.||.++-||.+++++
T Consensus       468 l~AiD~~TG~i~W~~~~~~---p~~~g~lstagg---lVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         468 LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN---LVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEEECTTTCCEEEEEEESS---CCCSCCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEcCCCCcEEeecCCCC---CCccceeEEcCC---eEEEeCCCCeEEEEECCCCcE
Confidence            4668888988887765432   222112345566   888999999999999998875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=2  Score=34.11  Aligned_cols=193  Identities=7%  Similarity=-0.070  Sum_probs=106.5

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-eEEEeCCCCcEEEEE--eeCCEEEEEEccCCCEEEEEeCCCCCCCCCceEEEEECCCC
Q 019672           10 VFFVSFNQDNSGFALSTK-DG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~-~g-~~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~v~iwd~~~~   85 (337)
                      +..++|++..+.+.-... .+ ++..+++......-.  .......+++.+..+.+..+..      ..+.|.+.++...
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~------~~~~I~~~~~dg~  111 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTEEEEEETTSC
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc------CCCEEEEEecCCc
Confidence            567888887777665433 23 555566655332222  2234555666666666666554      3678999998765


Q ss_pred             CEEEEEEcC-CceeEEEEcCC--eEEEEEC--C--eEEEEECCCCeeeeeecCCCCCceEEEEeeCCCccEEEEcCCCCc
Q 019672           86 TALRELNFL-TSILAVRLNKK--RLVIVLR--E--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (337)
Q Consensus        86 ~~~~~~~~~-~~v~~i~~~~~--~~~v~~d--~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~d  158 (337)
                      .....+... ....+++++|.  .++....  +  .|.--++...... .+.. .+.....+++.++.+..|..+.. ..
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~-~~~~~P~glaiD~~~~~lYw~d~-~~  188 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQ-DNLGLPNGLTFDAFSSQLCWVDA-GT  188 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEEC-TTCSCEEEEEEETTTTEEEEEET-TT
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeee-ecccccceEEEeecCcEEEEEeC-CC
Confidence            543323222 35778888753  3443432  2  3444455433222 2211 12223356666666656655543 46


Q ss_pred             cEEEEEEccCCccc---cc-CceEEEEeCCCCCEEEEEe-CCCcEEEEEEcCCCceeEeec
Q 019672          159 GSVLVYNVMELHSH---CE-APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFR  214 (337)
Q Consensus       159 g~v~i~d~~~~~~~---~~-~~i~~~~~s~dg~~lat~s-~dg~~i~vwd~~~~~~~~~~~  214 (337)
                      +.|...|+......   .. .....|++.  +.+|.-.. ..++ |...|..+++.+..+.
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEEC
T ss_pred             CEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEEC
Confidence            88999988654321   11 233577775  34454444 4455 5678888888776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.87  E-value=3  Score=34.74  Aligned_cols=175  Identities=13%  Similarity=0.159  Sum_probs=93.7

Q ss_pred             CceEEEEECCCCCEEEEEEcCCceeEEEE------cCC--eEEEEE--C---CeEEEEECC-CCeeeeeecCC-------
Q 019672           74 PRRLCLFNTTTGTALRELNFLTSILAVRL------NKK--RLVIVL--R---EKTYIYDAN-TLAILDTIDTV-------  132 (337)
Q Consensus        74 d~~v~iwd~~~~~~~~~~~~~~~v~~i~~------~~~--~~~v~~--d---~~i~i~d~~-~~~~~~~~~~~-------  132 (337)
                      .+-|.+||+. |+.+..+.. +.+..|.+      ..+  .+++++  +   .+|.+|.+. ....+..+...       
T Consensus        49 ~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~  126 (353)
T d1h6la_          49 KSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASA  126 (353)
T ss_dssp             TSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECS
T ss_pred             cCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccccccccc
Confidence            4459999985 777776543 34444443      222  244555  2   368888774 22233333221       


Q ss_pred             -CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCC---cc----ccc----CceEEEEeCCCCCEEEEEeCCCcEEE
Q 019672          133 -PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL---HS----HCE----APLAAIVLSSNGMYIATASEQGTIIR  200 (337)
Q Consensus       133 -~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~---~~----~~~----~~i~~~~~s~dg~~lat~s~dg~~i~  200 (337)
                       .++.++|......++.+.+.... .+|.+..|.+...   ..    +.+    ..+..|++++....|..+-++.. |.
T Consensus       127 ~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~G-iw  204 (353)
T d1h6la_         127 IDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEA-IW  204 (353)
T ss_dssp             SSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTE-EE
T ss_pred             cCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccc-eE
Confidence             12345544432223444333333 5899998877432   11    111    77899999999888888877653 34


Q ss_pred             EEEcC-----CCceeEeeccCCcceeEEEEEee--cCCC-cccEEEEEeCCCcEEEEecCCC
Q 019672          201 VFLVS-----EATKSYSFRRGTYPSTIFSLSFG--QSMQ-FQDILVATSSSGSLHVFSPGFA  254 (337)
Q Consensus       201 vwd~~-----~~~~~~~~~~~~~~~~i~~l~fs--~dg~-~~~~las~s~dg~v~iw~l~~~  254 (337)
                      .++..     .+..+.....+...+.+-.|+.-  +++. +  +|+|.-.+++..|||....
T Consensus       205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gy--livSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGY--LLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEE--EEEEEGGGTEEEEEESSTT
T ss_pred             EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeE--EEEEcCCCCeEEEEecCCC
Confidence            44543     12222222211223345555533  3333 1  4555556688999997654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.81  E-value=3.3  Score=35.21  Aligned_cols=240  Identities=10%  Similarity=0.034  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-----eEEEeCCCCcEEEE-EeeCCEEEEEEccCCCEEEEEeCCCCC---------CCC
Q 019672           10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQP---------SLS   73 (337)
Q Consensus        10 v~~~~fs~dg~~la~g~~-~g-----~~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~   73 (337)
                      +...+++|||+++|.+.+ +|     ++++|+++++.+-. ........+.+..++..+.++.-....         ...
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            456688999999886643 33     58999999987532 211111335567777777766532110         112


Q ss_pred             CceEEEEECCCCCEE--EEEEcCC---ceeEEEEcCC--eEEEEE----CC--eEEEEECCCCee--------eeeecCC
Q 019672           74 PRRLCLFNTTTGTAL--RELNFLT---SILAVRLNKK--RLVIVL----RE--KTYIYDANTLAI--------LDTIDTV  132 (337)
Q Consensus        74 d~~v~iwd~~~~~~~--~~~~~~~---~v~~i~~~~~--~~~v~~----d~--~i~i~d~~~~~~--------~~~~~~~  132 (337)
                      ...|..|.+.+....  .-+....   -+..+..+.+  .+++..    ..  .+.+.|+.....        ...+...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence            457888888765432  2222221   2445555544  333322    22  344445533211        0111111


Q ss_pred             CCCceEEEEeeCCCccEEEEcCCCCccEEEEEEccCCccc--------ccCceEEEEeCCCCCEEEEE-eCCCc-EEEEE
Q 019672          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--------CEAPLAAIVLSSNGMYIATA-SEQGT-IIRVF  202 (337)
Q Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~dg~v~i~d~~~~~~~--------~~~~i~~~~~s~dg~~lat~-s~dg~-~i~vw  202 (337)
                      .  .....+...++.-++.+.-...++.|...++......        +...+..-.++..+.+|+.. -.+|. .|+++
T Consensus       287 ~--~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         287 E--GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             S--SCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             c--cceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence            1  1111222222222232322113467777777654321        11334433444444555544 45542 25789


Q ss_pred             EcCCCceeEeeccCCcceeEEEEEeecCCCcccEEEEE-eCC--CcEEEEecCCCc
Q 019672          203 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSS--GSLHVFSPGFAI  255 (337)
Q Consensus       203 d~~~~~~~~~~~~~~~~~~i~~l~fs~dg~~~~~las~-s~d--g~v~iw~l~~~~  255 (337)
                      +..+++....+...  .+.|..+..+++..  .+..+- |--  .++.-+|+.++.
T Consensus       365 ~~~~~~~~~~~~~~--~~sv~~~~~~~~~~--~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         365 DLATGALLKIFPLE--VGSVVGYSGQKKDT--EIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ETTTCCEEEEECCC--SSEEEEEECCTTCS--EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCcEEEecCCC--CceEeeccCCCCCC--EEEEEEcCCCCCCeEEEEECCCCC
Confidence            99887764433222  23465555556554  233322 222  567778877654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.31  E-value=3.8  Score=34.85  Aligned_cols=110  Identities=6%  Similarity=0.013  Sum_probs=66.4

Q ss_pred             EEEEeeCCCccEEEEc----CCCCccEEEEEEccCCccccc----CceEEEEeCCCCCEEEEEeCCC-------------
Q 019672          138 LCAFSPSLNACFLAVP----ASTTKGSVLVYNVMELHSHCE----APLAAIVLSSNGMYIATASEQG-------------  196 (337)
Q Consensus       138 ~~~~~~~~~~~~la~~----~~~~dg~v~i~d~~~~~~~~~----~~i~~~~~s~dg~~lat~s~dg-------------  196 (337)
                      +.+++++|++.++|++    |+ +.-.++++|+.+++.+..    .....++|++|++.|.....+.             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~-e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGS-DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTC-SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccC-chheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            3456677888888744    43 456799999999886543    2236789999999887654331             


Q ss_pred             --cEEEEEEcCCCcee--EeeccCCcceeEEEEEeecCCCcccEEEEEeC---CCcEEEEec
Q 019672          197 --TIIRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSS---SGSLHVFSP  251 (337)
Q Consensus       197 --~~i~vwd~~~~~~~--~~~~~~~~~~~i~~l~fs~dg~~~~~las~s~---dg~v~iw~l  251 (337)
                        ..+..|.+.+...-  ..+.......-+..+..++|++   +++....   ++...+|-+
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~---~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECSSSSCCEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcc---eeeEEeeccCCccEEEEEe
Confidence              12456777665421  2222211223366778899999   7654332   334455543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.42  E-value=5.3  Score=33.52  Aligned_cols=29  Identities=7%  Similarity=-0.034  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCceEEEeC
Q 019672            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDS   35 (337)
Q Consensus         7 ~~~v~~~~fs~dg~~la~g~~~g~~vw~~   35 (337)
                      .....-++.++...++++|+.++++|..+
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t   64 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSKAVVGEL   64 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEH
T ss_pred             ccccceEEEeCCCCEEEEECCCEEEEEEH
Confidence            44566778888888888888888888753