Citrus Sinensis ID: 019679

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDKSWRVRYMVANQLYELCEavgpeptrsdvvpAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCvkelssdssQHVRSALATVIMGmapilgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLKDKVYSIRDAAANNVKRLAEefgpdwamqhIVPQVLEMINNPHYLYRMTILQAISLLapvmgseitcsqllpvvinaskdrvpniKFNVAKVLQSLipivdqsvvekSIRPClvelsedpdvdvRFFATQALQSkdqvmmsg
Flexible Loop (DISEMBL)
MDKSWRVRYMVANQLYELceavgpeptrsdVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsvvEKSIRPCLVelsedpdvdvRFFATqalqskdqvmmsg
Low Complexity Region (SEG)
MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Disordered region (IsUnstruct)
****WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS*****HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFAT*************
Disordered Region (DISOPRED)
MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM**
Disordered Region (DISEMBL)
MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE*********RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS********
Disordered Region (DISPRO)
***SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.979	0.562	0.928	0.0
Q38951	587	Serine/threonine-protein	no	no	0.881	0.505	0.913	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.997	0.850	0.893	1e-176
Q38845	588	Serine/threonine-protein	no	no	0.851	0.488	0.890	1e-176
Q54QR9	584	Serine/threonine-protein	yes	no	0.961	0.554	0.606	1e-114
Q32PI5	589	Serine/threonine-protein	yes	no	0.967	0.553	0.590	1e-111
P30153	589	Serine/threonine-protein	yes	no	0.967	0.553	0.590	1e-111
P54612	589	Serine/threonine-protein	yes	no	0.967	0.553	0.590	1e-111
Q76MZ3	589	Serine/threonine-protein	yes	no	0.967	0.553	0.590	1e-111
P54613	602	Serine/threonine-protein	no	no	0.967	0.541	0.584	1e-109

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/336 (92%), Positives = 328/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct: 312 NPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQVLEM+NNPHYLY
Sbjct: 432 FFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct: 492 RMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 552 KTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/336 (91%), Positives = 324/336 (96%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct: 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQHIVPQVLEMINNPHYLY
Sbjct: 432 FFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QSLIPIVDQ+VVE
Sbjct: 492 RMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
             IRPCLVELSEDPDVDVR+FA QALQS D VMMS 
Sbjct: 552 NMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/337 (89%), Positives = 323/337 (95%), Gaps = 1/337 (0%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGP+ T++++VPAYVRLLRDN AEVRIAAAGKV+K  RIL
Sbjct: 59  DKSWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRIL 118

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           +PELAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 119 SPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 178

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 179 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 238

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRL-AEEFGPDWAMQHIVPQVLEMINNPHYL 240
           FFDDKLGAL MQWLKDK YSIR+AAANNVKRL AEEFGP+WAMQHI+PQVL+MIN+PHYL
Sbjct: 239 FFDDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYL 298

Query: 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 300
           YRMTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+SVV
Sbjct: 299 YRMTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVV 358

Query: 301 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           E +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 359 ESTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 294/330 (89%), Positives = 320/330 (96%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAEVRIAAAGKVTK CR+L
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+TIE LLPIFLSLLKDEF
Sbjct: 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLASQLG+G
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH+VPQVL+M+NNPHYL+
Sbjct: 432 FFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLH 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVDQSVV+
Sbjct: 492 RMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVDQSVVD 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKD 331
           K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct: 552 KTIRQCLVDLSEDPDVDVRYFANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54QR9|2AAA_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/328 (60%), Positives = 265/328 (80%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
           +DKSWRVRYMVA  L ELCE++G E T+++++ A+V+LL+D EAEVR  A+ ++  +C +
Sbjct: 255 LDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEVRTEASLRIADVCSL 314

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
           L  E+ I+ ILPCVK+L SDSSQHVR+ALA VIM +API GK+ T+  LL +FL LLKD+
Sbjct: 315 LTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHLLKDD 374

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
           FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLAII+YIPLLASQLGV
Sbjct: 375 FPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGV 434

Query: 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240
            FFD+KLG LCM WL D V+SIR+AA NN+K+L E FG DWA  +I+P+VL + ++P+YL
Sbjct: 435 EFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYL 494

Query: 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 300
           YRMT L +IS L+ V+G ++  S ++P++     D+VPNI+FNVAK  Q++IP++D ++V
Sbjct: 495 YRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIV 554

Query: 301 EKSIRPCLVELSEDPDVDVRFFATQALQ 328
           +  ++P LV+L ED D DV+F+A+QALQ
Sbjct: 555 QSRVKPLLVKLHEDTDKDVKFYASQALQ 582

Scaffolding molecule which may coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 258/330 (78%), Gaps = 4/330 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQL 373

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/330 (58%), Positives = 255/330 (77%), Gaps = 4/330 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL  AVGP+ T +D++PA+  LL+D EAEVR AAA KV ++C  L
Sbjct: 267 DKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKVKELCENL 326

Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             E    + +  ILPC+KEL SD++QHV+SALA+VIMG++ ILGK+ TIE LLP+FL+ L
Sbjct: 327 PIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQL 386

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 387 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 446

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA NN+ +L ++FG +WA   IVP+VL M N+P
Sbjct: 447 LGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDP 506

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+   G EIT  Q+LP+V+  + D+V N++FNVAK LQ + PI+D 
Sbjct: 507 NYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDT 566

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             +++ ++P L +L +D D+DV++FA +A+
Sbjct: 567 DALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
224115920	587	predicted protein [Populus trichocarpa]	0.878	0.504	0.952	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	0.881	0.505	0.943	0.0
297734191	642	unnamed protein product [Vitis vinifera]	0.881	0.462	0.943	0.0
255541788	587	serine/threonine protein phosphatase 2a	0.765	0.439	0.943	0.0
343172122	576	protein phosphatase 2A subunit A2, parti	0.762	0.446	0.931	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.979	0.562	0.928	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	0.979	0.562	0.931	0.0
255576493	587	serine/threonine protein phosphatase 2a	0.881	0.505	0.931	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	0.881	0.505	0.928	0.0
356520585	587	PREDICTED: serine/threonine-protein phos	0.869	0.499	0.925	0.0

>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/335 (95%), Positives = 331/335 (98%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPE+AIQHILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 312 NPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL++INNPHYLY
Sbjct: 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLDLINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL A+SLL+PVMGSEITCSQLLP+VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct: 492 RMTILHAVSLLSPVMGSEITCSQLLPIVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336
           K+IRPCLVELSEDPDVDVRFFATQALQS D VMMS
Sbjct: 552 KTIRPCLVELSEDPDVDVRFFATQALQSSDHVMMS 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/336 (94%), Positives = 330/336 (98%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATI+QLLPIFLSLLKDEF
Sbjct: 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI+PQVL+MINNPHYLY
Sbjct: 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQVLDMINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQSL PIVDQSVV+
Sbjct: 492 RMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQSLTPIVDQSVVD 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 552 KTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/336 (94%), Positives = 330/336 (98%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 307 DKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 366

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATI+QLLPIFLSLLKDEF
Sbjct: 367 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLLPIFLSLLKDEF 426

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 427 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 486

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI+PQVL+MINNPHYLY
Sbjct: 487 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQVLDMINNPHYLY 546

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQSL PIVDQSVV+
Sbjct: 547 RMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQSLTPIVDQSVVD 606

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 607 KTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541788|ref|XP_002511958.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223549138|gb|EEF50627.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/336 (94%), Positives = 326/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLL DNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLCDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQ ILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 312 NPELAIQRILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL+MINNPHYLY
Sbjct: 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLDMINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL AISLLAPV+GSEITCS LLPVV+ ASKDRVPNIKFNVAKVLQ LIPIVD SVVE
Sbjct: 492 RMTILHAISLLAPVVGSEITCSSLLPVVVTASKDRVPNIKFNVAKVLQLLIPIVDHSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRPCLVELSEDPDVDVRFFATQALQS DQVMMS 
Sbjct: 552 KTIRPCLVELSEDPDVDVRFFATQALQSSDQVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172122|gb|AEL98765.1| protein phosphatase 2A subunit A2, partial [Silene latifolia]

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/335 (93%), Positives = 328/335 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGP+PTR+D+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 242 DKSWRVRYMVANQLYELCEAVGPDPTRADLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 301

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           +PELAIQHILPCVK+LSSDSSQHVRSALA+VIMGMAPILGKDATIEQLLPIFLSLLKDEF
Sbjct: 302 SPELAIQHILPCVKDLSSDSSQHVRSALASVIMGMAPILGKDATIEQLLPIFLSLLKDEF 361

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL SQLGVG
Sbjct: 362 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLGSQLGVG 421

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKVYSIRDAAANNVKRLAEEFGP+WAMQHIVPQVLEM+NNPHYLY
Sbjct: 422 FFDDKLGALCMQWLQDKVYSIRDAAANNVKRLAEEFGPEWAMQHIVPQVLEMMNNPHYLY 481

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL AISLLAPV+GSEITCS+LLPV++NASKDRVPNIKFNVAKVLQS+IPIVDQ+VVE
Sbjct: 482 RMTILHAISLLAPVLGSEITCSKLLPVLVNASKDRVPNIKFNVAKVLQSIIPIVDQTVVE 541

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336
           K+IRPCLVEL EDPDVDVRFFA QALQS D VMMS
Sbjct: 542 KTIRPCLVELGEDPDVDVRFFANQALQSIDNVMMS 576

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/336 (92%), Positives = 328/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct: 312 NPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQVLEM+NNPHYLY
Sbjct: 432 FFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct: 492 RMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 552 KTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/336 (93%), Positives = 328/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct: 312 NPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQVLEMINNPHYLY
Sbjct: 432 FFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct: 492 RMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 552 KTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/336 (93%), Positives = 326/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAM+HI+PQVLEM+ NPHYLY
Sbjct: 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQVLEMVTNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTIL+AISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVAKVLQSLI IVDQSVVE
Sbjct: 492 RMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVAKVLQSLISIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRPCL ELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 552 KTIRPCLAELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/336 (92%), Positives = 329/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           +PELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 312 SPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHIVPQVL+MINNPHYLY
Sbjct: 432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLDMINNPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMT+L+A+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVAKVLQSLIPIVDQ VVE
Sbjct: 492 RMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQSLIPIVDQPVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
           K+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 552 KTIRPSLVELSEDPDVDVRFFANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520585|ref|XP_003528942.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/336 (92%), Positives = 328/336 (97%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVANQLYELCEAVGP+PTRS++VPAYVRLLRDNEAEVRIAAAGKVTK  RIL
Sbjct: 252 DKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAAAGKVTKFSRIL 311

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NP+LAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEF
Sbjct: 312 NPDLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEF 371

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
           PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           FFDDKLGALCMQWLKDKVYSIRDAAANN+KRLAEEFGPDWAMQHI+PQVL+M+ +PHYLY
Sbjct: 432 FFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQVLDMVTDPHYLY 491

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           RMTILQAISLLAPV+GSEIT S+LLP+VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct: 492 RMTILQAISLLAPVLGSEITSSKLLPLVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query: 302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 337
            +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 552 STIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 587

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	0.994	0.570	0.931	1.5e-163
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	0.994	0.570	0.916	1.9e-161
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.979	0.561	0.890	7e-157
DICTYBASE|DDB_G0283601	584	pppA "protein phosphatase 2A s	0.973	0.561	0.606	2.5e-106
ZFIN|ZDB-GENE-040426-2700	589	ppp2r1a "protein phosphatase 2	0.964	0.551	0.604	2.1e-100
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.967	0.553	0.590	7.1e-100
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.967	0.553	0.590	7.1e-100
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.967	0.553	0.590	1.2e-99
UNIPROTKB|B3KQV6	410	PPP2R1A "Serine/threonine-prot	0.967	0.795	0.590	1.2e-99
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.967	0.553	0.590	1.5e-99

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
 Identities = 312/335 (93%), Positives = 328/335 (97%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAAAGKVTK CRIL
Sbjct:   252 DKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311

Query:    62 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             NPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct:   312 NPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query:   122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct:   372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query:   182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
             FFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQVLEM+NNPHYLY
Sbjct:   432 FFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLY 491

Query:   242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
             RMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE
Sbjct:   492 RMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 551

Query:   302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336
             K+IRP LVELSEDPDVDVRFFA QALQS D VMMS
Sbjct:   552 KTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMS 586

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
 Identities = 307/335 (91%), Positives = 324/335 (96%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAEVRIAAAGKVTK CRIL
Sbjct:   252 DKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFCRIL 311

Query:    62 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LLPIFLSLLKDEF
Sbjct:   312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEF 371

Query:   122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG
Sbjct:   372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431

Query:   182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
             FFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQHIVPQVLEMINNPHYLY
Sbjct:   432 FFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLY 491

Query:   242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
             RMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QSLIPIVDQ+VVE
Sbjct:   492 RMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVE 551

Query:   302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336
               IRPCLVELSEDPDVDVR+FA QALQS D VMMS
Sbjct:   552 NMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMS 586

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 294/330 (89%), Positives = 320/330 (96%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAEVRIAAAGKVTK CR+L
Sbjct:   252 DKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLL 311

Query:    62 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             NPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+TIE LLPIFLSLLKDEF
Sbjct:   312 NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEF 371

Query:   122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLASQLG+G
Sbjct:   372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIG 431

Query:   182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
             FFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH+VPQVL+M+NNPHYL+
Sbjct:   432 FFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLH 491

Query:   242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
             RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVDQSVV+
Sbjct:   492 RMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVDQSVVD 551

Query:   302 KSIRPCLVELSEDPDVDVRFFATQALQSKD 331
             K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct:   552 KTIRQCLVDLSEDPDVDVRYFANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

DICTYBASE|DDB_G0283601 pppA "protein phosphatase 2A scaffold subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 199/328 (60%), Positives = 265/328 (80%)

Query:     1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
             +DKSWRVRYMVA  L ELCE++G E T+++++ A+V+LL+D EAEVR  A+ ++  +C +
Sbjct:   255 LDKSWRVRYMVARLLKELCESMGTEITKTELIGAFVKLLKDTEAEVRTEASLRIADVCSL 314

Query:    61 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
             L  E+ I+ ILPCVK+L SDSSQHVR+ALA VIM +API GK+ T+  LL +FL LLKD+
Sbjct:   315 LTKEMNIKTILPCVKDLVSDSSQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHLLKDD 374

Query:   121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
             FPDVRLNIISKLDQV++VIGI++LSQSLLPAIVELAED  WRVRLAII+YIPLLASQLGV
Sbjct:   375 FPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGV 434

Query:   181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240
              FFD+KLG LCM WL D V+SIR+AA NN+K+L E FG DWA  +I+P+VL + ++P+YL
Sbjct:   435 EFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYL 494

Query:   241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 300
             YRMT L +IS L+ V+G ++  S ++P++     D+VPNI+FNVAK  Q++IP++D ++V
Sbjct:   495 YRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIV 554

Query:   301 EKSIRPCLVELSEDPDVDVRFFATQALQ 328
             +  ++P LV+L ED D DV+F+A+QALQ
Sbjct:   555 QSRVKPLLVKLHEDTDKDVKFYASQALQ 582

GO:0005813 "centrosome" evidence=TAS

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040426-2700 ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Danio rerio (taxid:7955)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 200/331 (60%), Positives = 256/331 (77%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  +L +AVGPE T++D+VPA+  LL+D EAEVR AAA KV + C  L
Sbjct:   254 DKSWRVRYMVADKFSDLQKAVGPEITKNDLVPAFQNLLKDCEAEVRAAAANKVKEFCENL 313

Query:    62 NPE-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 116
              PE     + + HILPCVKEL SD++QHV+SALA+VIMG++ ILGKD TIE LLP+FL+ 
Sbjct:   314 -PEDSRETIIMTHILPCVKELVSDTNQHVKSALASVIMGLSTILGKDNTIEHLLPLFLAQ 372

Query:   117 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176
             LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA 
Sbjct:   373 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 432

Query:   177 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
             QLGV FFD+KL +LCM WL D VY+IR+AA  N+ +L E+FG +WA   IVP+VL M N+
Sbjct:   433 QLGVEFFDEKLNSLCMAWLVDHVYAIREAATCNLMKLVEKFGAEWAQNTIVPKVLGMAND 492

Query:   237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296
             P+YL+RMT L  I+ L+ V G EIT   +LPVV+  S D+V N++FNVAK LQ + P++D
Sbjct:   493 PNYLHRMTTLFCINALSEVCGQEITTKHMLPVVLKMSNDQVANVRFNVAKSLQKIGPVLD 552

Query:   297 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
              S ++  ++P L +L+ D D+DV++FA +A+
Sbjct:   553 SSCLQTEVKPVLEKLASDQDMDVKYFAQEAI 583

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 195/330 (59%), Positives = 258/330 (78%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct:   254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query:    62 NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LLP+FL+ L
Sbjct:   314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQL 373

Query:   118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
             KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct:   374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query:   178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
             LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct:   434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query:   238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct:   494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query:   298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   554 STLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 195/330 (59%), Positives = 258/330 (78%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct:   254 DKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query:    62 NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LLP+FL+ L
Sbjct:   314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQL 373

Query:   118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
             KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct:   374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query:   178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
             LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct:   434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query:   238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct:   494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query:   298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   554 STLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 195/330 (59%), Positives = 257/330 (77%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct:   254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query:    62 NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct:   314 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373

Query:   118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
             KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct:   374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query:   178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
             LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct:   434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query:   238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct:   494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query:   298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|B3KQV6 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
 Identities = 195/330 (59%), Positives = 257/330 (77%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct:    75 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 134

Query:    62 NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct:   135 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 194

Query:   118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
             KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct:   195 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 254

Query:   178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
             LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct:   255 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 314

Query:   238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct:   315 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 374

Query:   298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   375 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 404

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 195/330 (59%), Positives = 257/330 (77%)

Query:     2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
             DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct:   254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313

Query:    62 NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
             + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct:   314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373

Query:   118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
             KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct:   374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433

Query:   178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
             LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct:   434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493

Query:   238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct:   494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553

Query:   298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38950	2AAB_ARATH	No assigned EC number	0.9285	0.9792	0.5621	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8931	0.9970	0.8506	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQH 84
           ++  +PA V LL  ++  V+  AA  ++ +    N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 85  VRS-ALATV--IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 128
           V   AL  +  +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	99.95
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.94
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.93
PRK09687	280	putative lyase; Provisional	99.91
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.91
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.91
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.89
PRK09687	280	putative lyase; Provisional	99.88
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.86
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.84
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.83
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.77
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.77
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.75
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.75
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.75
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.75
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.74
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.72
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.71
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.71
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.69
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.69
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.69
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.68
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.67
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.67
PTZ00429	746	beta-adaptin; Provisional	99.66
PTZ00429	746	beta-adaptin; Provisional	99.63
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.61
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.52
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.49
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.49
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.49
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.48
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.46
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.46
TIGR02270	410	conserved hypothetical protein. Members are found	99.44
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.43
KOG1243	690	consensus Protein kinase [General function predict	99.42
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.41
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.41
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.4
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.4
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.4
KOG1243	690	consensus Protein kinase [General function predict	99.39
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.38
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.35
TIGR02270	410	conserved hypothetical protein. Members are found	99.33
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.31
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.27
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.19
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.16
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.1
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.09
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.08
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.06
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	99.03
KOG2137	700	consensus Protein kinase [Signal transduction mech	99.02
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	99.02
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.01
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.94
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.93
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.92
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.91
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.9
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.9
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.88
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.88
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.88
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.86
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.84
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.82
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.82
KOG0567	289	consensus HEAT repeat-containing protein [General	98.81
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.81
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.79
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.78
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.73
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.72
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.7
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.68
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.67
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.66
KOG0567	289	consensus HEAT repeat-containing protein [General	98.65
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.63
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.59
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.59
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	98.58
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.56
KOG2025	892	consensus Chromosome condensation complex Condensi	98.55
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.54
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.53
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.52
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.52
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.5
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.48
PF05004	309	IFRD: Interferon-related developmental regulator (	98.48
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.47
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.46
KOG2025	892	consensus Chromosome condensation complex Condensi	98.46
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.44
KOG2956	516	consensus CLIP-associating protein [General functi	98.43
PF05004	309	IFRD: Interferon-related developmental regulator (	98.41
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.36
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.34
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.34
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.33
KOG2956	516	consensus CLIP-associating protein [General functi	98.32
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.31
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.29
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	98.29
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	98.29
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.26
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	98.25
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.23
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	98.22
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.22
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.22
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	98.21
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.2
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.2
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.19
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	98.16
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.15
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.12
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.12
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.12
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.11
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.09
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.08
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.06
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.04
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.9
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.9
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.89
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.86
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.84
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.82
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.81
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.79
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.78
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.78
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	97.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.74
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.73
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.72
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.71
KOG0413	1529	consensus Uncharacterized conserved protein relate	97.66
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.65
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.59
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.56
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	97.52
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.51
KOG0413	1529	consensus Uncharacterized conserved protein relate	97.45
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.38
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	97.35
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.35
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.27
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.26
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.25
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.24
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.23
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.23
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.15
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.14
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	97.11
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.09
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	97.09
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	97.09
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.06
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.06
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	97.03
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.96
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.95
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.91
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	96.9
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	96.86
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.85
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	96.84
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.81
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.76
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	96.66
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.63
KOG2973	353	consensus Uncharacterized conserved protein [Funct	96.6
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.6
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.57
KOG2081	559	consensus Nuclear transport regulator [Intracellul	96.56
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.52
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	96.51
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.51
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	96.41
KOG2549	576	consensus Transcription initiation factor TFIID, s	96.39
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	96.32
KOG2081	559	consensus Nuclear transport regulator [Intracellul	96.31
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	96.2
KOG2549	576	consensus Transcription initiation factor TFIID, s	96.17
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	96.12
PF05536	543	Neurochondrin: Neurochondrin	96.12
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	96.07
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.88
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.85
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.84
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.77
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.76
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	95.74
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.73
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	95.67
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.66
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	95.63
KOG2149	393	consensus Uncharacterized conserved protein [Funct	95.62
KOG2149	393	consensus Uncharacterized conserved protein [Funct	95.55
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	95.51
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.48
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	95.48
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.47
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.44
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	95.43
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	95.42
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	95.39
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	95.23
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.17
KOG2005	878	consensus 26S proteasome regulatory complex, subun	95.08
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.01
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.96
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	94.91
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.91
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	94.88
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	94.78
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.71
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	94.68
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	94.67
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	94.67
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	94.6
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	94.57
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	94.53
COG5110	881	RPN1 26S proteasome regulatory complex component [	94.49
PF05536	543	Neurochondrin: Neurochondrin	94.47
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	94.4
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	94.39
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	94.36
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	94.31
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.26
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.26
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.2
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.11
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.1
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.06
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.89
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.67
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	93.6
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.4
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	93.38
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	93.38
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.36
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	93.17
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	93.01
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	93.01
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.95
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.95
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.91
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.79
cd03561	133	VHS VHS domain family; The VHS domain is present i	92.79
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	92.56
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.4
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	91.98
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	91.86
COG5110	881	RPN1 26S proteasome regulatory complex component [	91.68
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	91.32
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	91.26
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	91.01
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	90.95
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	90.89
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	90.81
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	90.74
KOG3678	832	consensus SARM protein (with sterile alpha and arm	90.71
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	90.53
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	90.42
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	90.42
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	90.23
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	90.1
KOG1048	717	consensus Neural adherens junction protein Plakoph	90.04
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	89.68
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	89.43
KOG2153	704	consensus Protein involved in the nuclear export o	89.42
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	89.39
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	89.31
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	89.18
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	88.76
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	88.47
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.43
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	88.41
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	88.03
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	87.9
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	87.78
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	87.69
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	87.0
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	86.79
COG5369	743	Uncharacterized conserved protein [Function unknow	86.78
KOG2199	462	consensus Signal transducing adaptor protein STAM/	86.58
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	86.48
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	86.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	86.21
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	85.86
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	85.55
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	85.37
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.62
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	83.95
KOG2229	616	consensus Protein required for actin cytoskeleton	83.73
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	83.62
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	83.6
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	83.18
KOG2038	988	consensus CAATT-binding transcription factor/60S r	82.83
KOG1837	1621	consensus Uncharacterized conserved protein [Funct	82.75
KOG2038	988	consensus CAATT-binding transcription factor/60S r	82.52
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.51
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	82.23
PF12612	193	TFCD_C: Tubulin folding cofactor D C terminal; Int	81.71
COG5369	743	Uncharacterized conserved protein [Function unknow	81.65
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	81.55
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	81.46
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	81.07
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	80.98
KOG3961	262	consensus Uncharacterized conserved protein [Funct	80.4

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-32  Score=242.08  Aligned_cols=333  Identities=53%  Similarity=0.800  Sum_probs=314.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----HHHHHHhhhHhhHHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKEL   77 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~----~~~~~~~ll~~l~~l   77 (337)
                      |++|++|+++++....+...+|++..+.++.|.+..++.|+.+++|.+.+.-...+....+    +....+.++|.++.+
T Consensus       327 d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l  406 (759)
T KOG0211|consen  327 DGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL  406 (759)
T ss_pred             ChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence            7899999999999999999999988899999999999999999999999999999999887    444556788999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHH---HhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~---~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                      +.|.+..||.+.+..+..+...+|.+.....+.|.+...++|..+.||.+..   ..+..+....|.+...+..+|.+..
T Consensus       407 v~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e  486 (759)
T KOG0211|consen  407 VLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE  486 (759)
T ss_pred             HhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh
Confidence            9999999999999999999999998888899999999999999999999999   5666666777888888999999999


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhh
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI  234 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~  234 (337)
                      +..|..|++|.+..+.+..++...|.+.+.+.+-+.+..++.|...++|++|+..+..++..+|.+|..+.++|.+..+.
T Consensus       487 l~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~  566 (759)
T KOG0211|consen  487 LAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMD  566 (759)
T ss_pred             hccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHh
Confidence            99999999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC
Q 019679          235 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  314 (337)
Q Consensus       235 ~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d  314 (337)
                      .+++|.+|.+.+.++..+++.+|.+.+..+++|.+..+..|+.++||.++++.|..+.+.+......+.+.|++..+..|
T Consensus       567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d  646 (759)
T KOG0211|consen  567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSD  646 (759)
T ss_pred             cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHhh
Q 019679          315 PDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       315 ~~~~vr~~a~~al~~l~~~~  334 (337)
                      ++.+||+.|..|++.+....
T Consensus       647 ~~~dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  647 QELDVRYRAILAFGSIELSR  666 (759)
T ss_pred             cccchhHHHHHHHHHHHHHH
Confidence            99999999999999987654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=99.95  E-value=1.4e-26  Score=208.11  Aligned_cols=333  Identities=23%  Similarity=0.312  Sum_probs=268.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhcCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSD   80 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~~d   80 (337)
                      |..++||+++++.++.+++.++.+.....++|.+.++..|+...||.+|...+..+.+.+..+ ...+.+.+.+.+..+|
T Consensus       248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d  327 (759)
T KOG0211|consen  248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED  327 (759)
T ss_pred             ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Confidence            789999999999999999999998888899999999999999999999999999999998887 8888999999999999


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc----hhhHHhhHHHHHHHHh
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELA  156 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~llp~l~~~~  156 (337)
                      .+|++|....+.+..+...+|++.......+.+..+++|+..++|.++......+.....    ++...+.++|.+..+.
T Consensus       328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv  407 (759)
T KOG0211|consen  328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV  407 (759)
T ss_pred             hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence            999999999999999999999877777889999999999999999999999999888776    4445567889999999


Q ss_pred             cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHH---HHHhChHHHHhhHHHHHHHh
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFGPDWAMQHIVPQVLEM  233 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~l~~~l~~~  233 (337)
                      .|.+..+|.+.+.....+...+|.+...+.+.|.+...++|..+.||......+...   -...|.....+.++|.+.++
T Consensus       408 ~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el  487 (759)
T KOG0211|consen  408 LDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL  487 (759)
T ss_pred             hcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence            999999999988888887777777666667778888888888888887777443332   23334555666777777777


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCC-------------------------------------
Q 019679          234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR-------------------------------------  276 (337)
Q Consensus       234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------------------------------------  276 (337)
                      ..|.+|++|.+.++.+..++...|.+++.+.+.+.+...+.|.                                     
T Consensus       488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~  567 (759)
T KOG0211|consen  488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDL  567 (759)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence            7777777777777777777776665555544444444444444                                     


Q ss_pred             --ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          277 --VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       277 --~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                        ++.+|.+...++..+++.+|.+.+.++++|.+..+.+|+.++||..+++.+..+...+
T Consensus       568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL  627 (759)
T ss_pred             CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence              4555555555555555556667777888888888888888888888888888877654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.4e-25  Score=192.09  Aligned_cols=333  Identities=20%  Similarity=0.247  Sum_probs=266.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-------HHHHhhhHhh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------LAIQHILPCV   74 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-------~~~~~ll~~l   74 (337)
                      |+++.+|..+.-.+..++..-|-.. |++++|.+.+++.+++....+.|..+|.++++.....       .-..-++|.+
T Consensus       101 d~~~lIr~tvGivITTI~s~~~~~~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkf  179 (885)
T KOG2023|consen  101 DASPLIRATVGIVITTIASTGGLQH-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKF  179 (885)
T ss_pred             CchHHHHhhhhheeeeeeccccccc-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHH
Confidence            6777888887777777776555544 6999999999999999999999999999999864432       1134588999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH---hhHH
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLL  149 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll  149 (337)
                      .++.++++|++|.-|+.++..+.-...+..  ..+..+..+..+.+|++++||+..+.++..+.+.- ++.+.   ..++
T Consensus       180 l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr-~dkl~phl~~Iv  258 (885)
T KOG2023|consen  180 LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIV  258 (885)
T ss_pred             HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHH
Confidence            999999999999999999999876555432  34778888999999999999999999999988763 33332   3466


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhC-hh---hHHHHHHHHHHHHc----------c-------------------
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG---FFDDKLGALCMQWL----------K-------------------  196 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~---~~~~~l~~~l~~~l----------~-------------------  196 (337)
                      ..+....+|.+..|--.+++....+++.-- ++   .+.++++|++++.+          +                   
T Consensus       259 eyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf  338 (885)
T KOG2023|consen  259 EYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF  338 (885)
T ss_pred             HHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence            666777789999999999999988887642 22   25678888887655          1                   


Q ss_pred             -----------------c----------cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHH
Q 019679          197 -----------------D----------KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI  249 (337)
Q Consensus       197 -----------------d----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l  249 (337)
                                       |          ..|+.|+.++.++..++..+|.+ +.+.++|++.+.+.+..|.+|++++.++
T Consensus       339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vrEagvLAl  417 (885)
T KOG2023|consen  339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVREAGVLAL  417 (885)
T ss_pred             hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhhhhhHHHH
Confidence                             0          13899999999999999999755 6788999999999999999999999999


Q ss_pred             HHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH---HhhhCCCCccHHHHHH
Q 019679          250 SLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL---VELSEDPDVDVRFFAT  324 (337)
Q Consensus       250 ~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l---~~l~~d~~~~vr~~a~  324 (337)
                      |++++.+-..  +..+.++|++..++.|+.+.||.-++.+|++.++.+-++...+.+.|.|   .+..-|++.+|+..|+
T Consensus       418 GAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAc  497 (885)
T KOG2023|consen  418 GAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAAC  497 (885)
T ss_pred             HHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHH
Confidence            9999877443  3456799999999999999999999999999998775443333444444   4445688999999999


Q ss_pred             HHHHHHHHhhhCC
Q 019679          325 QALQSKDQVMMSG  337 (337)
Q Consensus       325 ~al~~l~~~~~~~  337 (337)
                      .|+..+-.-.+++
T Consensus       498 sAfAtleE~A~~e  510 (885)
T KOG2023|consen  498 SAFATLEEEAGEE  510 (885)
T ss_pred             HHHHHHHHhccch
Confidence            9999988776653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.6e-23  Score=187.45  Aligned_cols=328  Identities=17%  Similarity=0.237  Sum_probs=261.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD   80 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d   80 (337)
                      +.+.||+..++.+.++++...++ .|+++++++.+..+++++..|+.|+..|..+...++..  .+...+.+++.+.++|
T Consensus        92 ~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d  170 (1075)
T KOG2171|consen   92 TEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD  170 (1075)
T ss_pred             cchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC
Confidence            56789999999999999999999 79999999999999999999999999999998887765  4567899999999999


Q ss_pred             CcHHHHHHHHHHHHhcCcccC--hhhH--HhhhHHHHH----HhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHH
Q 019679           81 SSQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFL----SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLP  150 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp  150 (337)
                      ++..||..++++++.++....  +...  ...++|-++    +.+.+.+...-..++.++..+....++  ......++.
T Consensus       171 ~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~  250 (1075)
T KOG2171|consen  171 PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQ  250 (1075)
T ss_pred             CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            988899999999999998774  2211  234556444    445566777778888888888876542  122234555


Q ss_pred             HHHHHhcC--CchHHHHHHHHHhhHhHhhhCh-----hhHHHHHHHHHHHHcccc----c------------hHHHHHHH
Q 019679          151 AIVELAED--RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDK----V------------YSIRDAAA  207 (337)
Q Consensus       151 ~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~----~------------~~vr~~a~  207 (337)
                      ...+...+  -+..+|..+++.+..+++....     ..+.+.+++.++..+.|.    +            ..--..|.
T Consensus       251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~  330 (1075)
T KOG2171|consen  251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE  330 (1075)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH
Confidence            55555544  4578999999999999887321     124556777777766421    1            12355788


Q ss_pred             HHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679          208 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVA  285 (337)
Q Consensus       208 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~  285 (337)
                      +++..++..+|++.+...+++++..++.+++|..|.+++.+++.++++++..  ...+.++|+++.+++|+++.||.+|+
T Consensus       331 ~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~  410 (1075)
T KOG2171|consen  331 QALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL  410 (1075)
T ss_pred             HHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999988753  24678999999999999999999999


Q ss_pred             HHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCC-ccHHHHHHHHHHHHH
Q 019679          286 KVLQSLIPIVDQS---VVEKSIRPCLVELSEDPD-VDVRFFATQALQSKD  331 (337)
Q Consensus       286 ~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~-~~vr~~a~~al~~l~  331 (337)
                      .++|+++..+.+.   .+.+.+.|+|.....|+. ++|...|+-|+-.+.
T Consensus       411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~  460 (1075)
T KOG2171|consen  411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS  460 (1075)
T ss_pred             HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            9999999999876   455678888888777764 588888888877554

>PRK09687 putative lyase; Provisional

Probab=99.91  E-value=3.8e-22  Score=163.39  Aligned_cols=254  Identities=20%  Similarity=0.185  Sum_probs=205.5

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -.+.+.+.+.|++..||..++..|..+.+        ..+.+.+..+++|+++.+|..++..|+.+...-.   .....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence            36677788899999999999999987764        3566777788999999999999999999875211   124567


Q ss_pred             HHHHHh-hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679          111 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  189 (337)
Q Consensus       111 ~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  189 (337)
                      +.+..+ .+|+++.||..++.+|+.+...-  ......+++.+.....|++|.||..++..++.+.        .+..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence            778776 78999999999999999985421  1112446667778889999999999999987552        145789


Q ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679          190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  269 (337)
Q Consensus       190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  269 (337)
                      .+..+++|+++.||..|+.+|+.+.  .+    .+...+.+...+.|+++.||..++.+++.+..        ...+|.+
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence            9999999999999999999999871  11    23577888888999999999999999988542        4788999


Q ss_pred             HhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhC-CCCccHHHHHHHHHHH
Q 019679          270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS  329 (337)
Q Consensus       270 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~  329 (337)
                      .+.+.+++  +|..++.+|+.++.        ...+|.|..+++ ++|..|+..+.+++..
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            99998875  78899999999975        468888888876 8899999999999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.91  E-value=4.9e-22  Score=188.57  Aligned_cols=265  Identities=23%  Similarity=0.280  Sum_probs=213.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.||+.+++.|+.+.        .+..+|.|.+.+.|+++.||..++..|..+++..+..       +.+...++|+
T Consensus       632 D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------~~L~~~L~~~  696 (897)
T PRK13800        632 DPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------PALRDHLGSP  696 (897)
T ss_pred             CCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------HHHHHHhcCC
Confidence            889999999999999865        3557899999999999999999999999887644332       3455677889


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  161 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~  161 (337)
                      ++.||..++..|+.+..  +.       .+.+...+.|+++.||..|+.+|+.+...           +.+...+.|+++
T Consensus       697 d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-----------~~l~~~l~D~~~  756 (897)
T PRK13800        697 DPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDDV-----------ESVAGAATDENR  756 (897)
T ss_pred             CHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-----------HHHHHHhcCCCH
Confidence            99999999999998752  11       13567789999999999999999986321           335677899999


Q ss_pred             HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH
Q 019679          162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY  241 (337)
Q Consensus       162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  241 (337)
                      .||..++..|+.+...-      ....+.+..+++|+++.||..|+.+|+.+..    .   +.+.+.+...+.|++|.+
T Consensus       757 ~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~~aL~d~d~~V  823 (897)
T PRK13800        757 EVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAATAALRASAWQV  823 (897)
T ss_pred             HHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHHHHhcCCChHH
Confidence            99999999998875432      1235778889999999999999999987632    1   224456778889999999


Q ss_pred             HHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHH
Q 019679          242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRF  321 (337)
Q Consensus       242 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~  321 (337)
                      |..++.+|+.+..        +.-++.|..++.|+++.||.+|+.+|+.+.   +    .....+.|..+++|.+.+||.
T Consensus       824 R~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al~D~d~~Vr~  888 (897)
T PRK13800        824 RQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTALTDSDADVRA  888 (897)
T ss_pred             HHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHHhCCCHHHHH
Confidence            9999999988642        345588899999999999999999999972   1    135667777889999999999


Q ss_pred             HHHHHHHH
Q 019679          322 FATQALQS  329 (337)
Q Consensus       322 ~a~~al~~  329 (337)
                      .|.+||+.
T Consensus       889 ~A~~aL~~  896 (897)
T PRK13800        889 YARRALAH  896 (897)
T ss_pred             HHHHHHhh
Confidence            99999974

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.9e-21  Score=172.42  Aligned_cols=336  Identities=14%  Similarity=0.198  Sum_probs=255.7

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHH--HHhhhHhh
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELA--IQHILPCV   74 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~--~~~ll~~l   74 (337)
                      +++++..|..+...+..+...+|....  ...+.+.+.+.+.|++..||.+++++++.++..+.  +..+  ...++|.+
T Consensus       128 ~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~  207 (1075)
T KOG2171|consen  128 KSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSL  207 (1075)
T ss_pred             cCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHH
Confidence            357888999999999999999998664  34799999999999988899999999999998874  2211  11233322


Q ss_pred             H----HhcC-------------------------------------------CCcHHHHHHHHHHHHhcCcccChhh---
Q 019679           75 K----ELSS-------------------------------------------DSSQHVRSALATVIMGMAPILGKDA---  104 (337)
Q Consensus        75 ~----~l~~-------------------------------------------d~~~~vr~~a~~~l~~l~~~~~~~~---  104 (337)
                      .    ..++                                           +-+..+|..|++.+..+.+..+...   
T Consensus       208 l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~  287 (1075)
T KOG2171|consen  208 LNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL  287 (1075)
T ss_pred             HHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence            1    1111                                           3455677777777776665532111   


Q ss_pred             --HHhhhHHHHHHhhcCCC----------------hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHH
Q 019679          105 --TIEQLLPIFLSLLKDEF----------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA  166 (337)
Q Consensus       105 --~~~~l~~~l~~~l~d~~----------------~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~  166 (337)
                        ....+++.++.++.|..                ..--..|.++++.++-.+|++.+.+.+++.+..++++++|+-|++
T Consensus       288 ~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A  367 (1075)
T KOG2171|consen  288 ALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA  367 (1075)
T ss_pred             hhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence              23456666666653211                225567888899999888888888899999999999999999999


Q ss_pred             HHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcc-hH
Q 019679          167 IIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPH-YL  240 (337)
Q Consensus       167 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~-~~  240 (337)
                      ++.+++.+++.++...  ..+++++++.++++|+.+.||.+|+.++|+++..+.++.   +.+.+.|.+...+.+.. .+
T Consensus       368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r  447 (1075)
T KOG2171|consen  368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR  447 (1075)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH
Confidence            9999999999886543  567899999999999999999999999999999998753   35567777777777654 78


Q ss_pred             HHHHHHHHHHHhccccChHH---HHhhHHH-HHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC
Q 019679          241 YRMTILQAISLLAPVMGSEI---TCSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED  314 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~---~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d  314 (337)
                      |...|+.++-.+.+.+.++.   |.+.++. .+..++....+.||..++.+++.++...+..  .+.+.++|.|.+.+..
T Consensus       448 V~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n  527 (1075)
T KOG2171|consen  448 VQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQN  527 (1075)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhC
Confidence            88888888888887776654   3444555 4444556777899999999999999988875  4568899999996543


Q ss_pred             C----CccHHHHHHHHHHHHHHhhhC
Q 019679          315 P----DVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       315 ~----~~~vr~~a~~al~~l~~~~~~  336 (337)
                      .    ...+|.+..+.++.++.+.|.
T Consensus       528 ~~~~d~r~LrgktmEcisli~~AVGk  553 (1075)
T KOG2171|consen  528 ADDKDLRELRGKTMECLSLIARAVGK  553 (1075)
T ss_pred             CCchhhHHHHhhHHHHHHHHHHHhhh
Confidence            2    356788888999999988874

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.8e-22  Score=171.25  Aligned_cols=333  Identities=19%  Similarity=0.188  Sum_probs=237.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS   79 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~   79 (337)
                      +..|..|+-.+.+++-++..+|.+. .+.++|.+.+.+.++++.+|++++-++|.+++.+...  .+...++|++..++.
T Consensus       366 ~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~  444 (885)
T KOG2023|consen  366 FSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD  444 (885)
T ss_pred             cccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence            3569999999999999999999888 4889999999999999999999999999999998775  345568999999999


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH---hhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVE  154 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~  154 (337)
                      |+.+-||+.+|+.++..+.+.-.+...+.+.|.+..   .+-|++..|+++|+.+++.+-+..+.+-+  ...++..+..
T Consensus       445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~  524 (885)
T KOG2023|consen  445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF  524 (885)
T ss_pred             cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            999999999999999999877655554555555554   45699999999999999999888775422  2233333333


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhCh----hhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHH------
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGV----GFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW------  221 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------  221 (337)
                      ..+--..+--.....+++.++..+|.    ..+.+.++|.+.   +.++|+++.+ .-.+.++..++..+|.-+      
T Consensus       525 af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~  603 (885)
T KOG2023|consen  525 AFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQP  603 (885)
T ss_pred             HHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHH
Confidence            33221111122345667777776654    345666777776   3567777664 344667777777665321      


Q ss_pred             HHhhHHHHHH---Hhh----cCc-----chHHHHHHHHHHHHhccccChH----HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679          222 AMQHIVPQVL---EMI----NNP-----HYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVA  285 (337)
Q Consensus       222 ~~~~l~~~l~---~~~----~~~-----~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~  285 (337)
                      ..+.-+..+.   +.+    +++     +-.--..++..++.+++.+|..    ...+.++.+++.++.|+.++||+.+.
T Consensus       604 Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F  683 (885)
T KOG2023|consen  604 VYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF  683 (885)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence            1111111221   111    121     1112246788888888888753    24567999999999999999999999


Q ss_pred             HHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          286 KVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       286 ~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      ..||.+.+.+.+.  .....++|.+-.-++-....+-..|++|+|.++-.+|.
T Consensus       684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~  736 (885)
T KOG2023|consen  684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGL  736 (885)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhch
Confidence            9999999877433  12344555555433334566889999999999988874

>PRK09687 putative lyase; Provisional

Probab=99.88  E-value=1.2e-20  Score=154.63  Aligned_cols=244  Identities=16%  Similarity=0.098  Sum_probs=196.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHh-cCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL-SSD   80 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l-~~d   80 (337)
                      |++..||..++.+|+.+.        .+.+++.+.+++.|+++.+|..++.+|+.++..-..   ....+|.+..+ .+|
T Consensus        34 d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D  102 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALED  102 (280)
T ss_pred             CCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcC
Confidence            789999999999998765        256788999999999999999999999998652111   23456777765 899


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~  160 (337)
                      +++.||..++.+||.++....  .....++..+...+.|+++.||..++.+|+.+..        +..++.|...++|++
T Consensus       103 ~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~L~~~L~d~~  172 (280)
T PRK09687        103 KSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPLLINLLKDPN  172 (280)
T ss_pred             CCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHHHHHHhcCCC
Confidence            999999999999999864221  1123456677788899999999999999987643        457788899999999


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      +.||..++..|+.+.  .+    .+...+.+...+.|+++.||..|+.+|+.+.    .    ...+|.+.+.++++.  
T Consensus       173 ~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~----~~av~~Li~~L~~~~--  236 (280)
T PRK09687        173 GDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D----KRVLSVLIKELKKGT--  236 (280)
T ss_pred             HHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C----hhHHHHHHHHHcCCc--
Confidence            999999999999881  11    2457788999999999999999999998743    2    258889999999877  


Q ss_pred             HHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHH
Q 019679          241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS  290 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~  290 (337)
                      +|..++.+++.+..        +..+|.+..++. +++..|+..+..++..
T Consensus       237 ~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        237 VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            56678888888664        367889999886 8889999999988764

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=3.6e-19  Score=153.14  Aligned_cols=329  Identities=18%  Similarity=0.211  Sum_probs=252.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-HHhhhHhhHHhcCCC
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDS   81 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-~~~ll~~l~~l~~d~   81 (337)
                      ++..||+++..++..+........ ...+++.+.+++....-.-|..+...+..+....+.+.. ...++..+.+..+|.
T Consensus       108 ps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk  186 (569)
T KOG1242|consen  108 PSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDK  186 (569)
T ss_pred             CcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhccc
Confidence            567788888888877776554433 246777888888777777888888888888776665533 234667777788887


Q ss_pred             cHHHHH-HHHHHHHhcCcccCh--hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC
Q 019679           82 SQHVRS-ALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  158 (337)
Q Consensus        82 ~~~vr~-~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d  158 (337)
                      +...|+ .+..+.......+|.  +...-.++|.++..+.|..+.||.++..+...+...+..... +.++|.+..-+.+
T Consensus       187 ~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~  265 (569)
T KOG1242|consen  187 KSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLE  265 (569)
T ss_pred             chhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHH
Confidence            664444 455555555444442  334567788888889999999999999999999998877666 5566666555555


Q ss_pred             CchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC
Q 019679          159 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN  236 (337)
Q Consensus       159 ~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~  236 (337)
                      ..|+.+.++++.++.++...+..  ...+.++|.+.+-|.|+.++||+++..++.+++....+.. .+.++|.+.+.+.|
T Consensus       266 ~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~d  344 (569)
T KOG1242|consen  266 AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALAD  344 (569)
T ss_pred             HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcC
Confidence            59999999999999887766543  3678899999999999999999999999999999887654 56799999999999


Q ss_pred             cchHHHHHHHHHHHHh--ccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHh
Q 019679          237 PHYLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVE  310 (337)
Q Consensus       237 ~~~~vR~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~  310 (337)
                      ++-.+..+ +..++.-  .+.... +....++|++.+.+.+.+.+.++.++..++.++.....+    .+...++|.|..
T Consensus       345 p~~~~~e~-~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~  422 (569)
T KOG1242|consen  345 PSCYTPEC-LDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE  422 (569)
T ss_pred             cccchHHH-HHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH
Confidence            98555443 3333332  222333 356789999999999999999999999999999988332    567889999999


Q ss_pred             hhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          311 LSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       311 l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      -..|..|++|..+.+||+.+.+-+|.
T Consensus       423 ~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  423 NLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988877663

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.3e-19  Score=154.35  Aligned_cols=331  Identities=17%  Similarity=0.172  Sum_probs=262.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhCHHHHHH---hhhHhhHHh-
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPELAIQ---HILPCVKEL-   77 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~-vR~~a~~~l~~~~~~~~~~~~~~---~ll~~l~~l-   77 (337)
                      +.++.+..++++++.++..--|...|+++++.+..-..++.+. +|+.+++++|.+++.++++...+   .++.-+.+. 
T Consensus       102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm  181 (859)
T KOG1241|consen  102 PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM  181 (859)
T ss_pred             CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence            5677888999999999998888888999999999998887776 99999999999999999984433   344444443 


Q ss_pred             -cCCCcHHHHHHHHHHHHhcCc----ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679           78 -SSDSSQHVRSALATVIMGMAP----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL  149 (337)
Q Consensus        78 -~~d~~~~vr~~a~~~l~~l~~----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll  149 (337)
                       .+.++..||.++..+|.+-.+    .+..+.-...++...++.-+.++.+|+.+|+.+|-.+....-.   .-+.+.++
T Consensus       182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf  261 (859)
T KOG1241|consen  182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF  261 (859)
T ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             346788999999999987443    4445656678999999999999999999999999999876532   11224455


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhh---------------Chh------hHHHHHHHHHHHHcc-------ccchH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQL---------------GVG------FFDDKLGALCMQWLK-------DKVYS  201 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~---------------~~~------~~~~~l~~~l~~~l~-------d~~~~  201 (337)
                      +.-.....+.+..|...+++..+.++..-               .+.      ...+.++|.++++|.       |++|+
T Consensus       262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn  341 (859)
T KOG1241|consen  262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN  341 (859)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence            55556667788889888888888665421               110      123478899988874       46799


Q ss_pred             HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCCh
Q 019679          202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVP  278 (337)
Q Consensus       202 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~  278 (337)
                      +-.+|-.+|..+++..|.+ +.+.++|++.+.+++++|+.|.+++.++|.+.+.-...   ......+|.+..+..|++-
T Consensus       342 p~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl  420 (859)
T KOG1241|consen  342 PAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL  420 (859)
T ss_pred             HHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence            9999999999999988755 66789999999999999999999999999998766543   3455788999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          279 NIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       279 ~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      .||..+..+|+++++.+..    ......+++.+..-++| .|+|-..+++++..++++..
T Consensus       421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~  480 (859)
T KOG1241|consen  421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY  480 (859)
T ss_pred             hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH
Confidence            9999999999999987653    34556667777776777 89999999999999997654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.84  E-value=5e-19  Score=168.20  Aligned_cols=244  Identities=21%  Similarity=0.184  Sum_probs=195.1

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -++.+.+.+.|+++.||..|+..|+.+..        ...+|.|.+++.|+++.||..++.+|..+.+..+.       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            47788899999999999999999998753        34567777888999999999999999988653332       2


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  190 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  190 (337)
                      +.+...+.++++.||..++..|+.+...  .       .+.+...+.|+++.||..++..|..+.    ..       +.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~~-------~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVD----DV-------ES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhccc----Cc-------HH
Confidence            5667778899999999999999886421  1       124556789999999999999988752    11       33


Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679          191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  270 (337)
Q Consensus       191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  270 (337)
                      +..++.|+++.||..++.+|+.+...-      ...++.+..+++|+++.+|.+++.+|+.+...       ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            567899999999999999999875421      12367788899999999999999999886431       22335577


Q ss_pred             hhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          271 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      ..+.|+++.||.+|+++|+.+..        ....+.|..+++|+++.||..|+.+|+.+
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            88999999999999999998752        34457788889999999999999999886

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.83  E-value=2.6e-19  Score=163.03  Aligned_cols=270  Identities=22%  Similarity=0.287  Sum_probs=225.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------HHHHHhhhHhhHHhc
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELS   78 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~------~~~~~~ll~~l~~l~   78 (337)
                      ...|..+++.+..++.+...+.....++|.+..++.|+++.||..|+.+|.++...+.+      ..+.++++|.+..++
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            35688999999999999999888899999999999999999999999999998876532      267899999999999


Q ss_pred             CC-CcHHHHHHHHHHHHhcCcccC------------------------h-------hhHHhhhHHHHHHhhcCCChhHHH
Q 019679           79 SD-SSQHVRSALATVIMGMAPILG------------------------K-------DATIEQLLPIFLSLLKDEFPDVRL  126 (337)
Q Consensus        79 ~d-~~~~vr~~a~~~l~~l~~~~~------------------------~-------~~~~~~l~~~l~~~l~d~~~~vr~  126 (337)
                      +| ....||.+.+.+|+.++...-                        .       ....+.+-..+..++.|+.+.||+
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr  596 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR  596 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            99 677999999999998865321                        0       001234556677889999999999


Q ss_pred             HHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHH
Q 019679          127 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA  206 (337)
Q Consensus       127 ~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  206 (337)
                      +.++++..++..+|.+.-.+.+++++..+++|++|+.|.+.++.+.-++-..|.....+.++|.+.+.|.|.++.|-..|
T Consensus       597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a  676 (1431)
T KOG1240|consen  597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA  676 (1431)
T ss_pred             HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence            99999999999999887778899999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHHHHHHHHhC-hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc
Q 019679          207 ANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK  274 (337)
Q Consensus       207 ~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  274 (337)
                      +.++..+++.-- .+.....++..+.-++-+|+..+|.+++..|..++..++.....-.++|.+..++.
T Consensus       677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            999998887421 12233446666777788999999999999999999888866555566666555544

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.83  E-value=6.2e-18  Score=147.40  Aligned_cols=321  Identities=20%  Similarity=0.283  Sum_probs=256.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~   75 (337)
                      |.++..|++.+.++..+...+|......    .++.-+.-.++..+.+.. -.+..++.+...++.  +.+...+...+.
T Consensus       727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL  805 (1172)
T KOG0213|consen  727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTIL  805 (1172)
T ss_pred             cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence            6778899999999999999988755433    344444444444333332 344566666666555  345556666777


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCc---ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAP---ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLL  149 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll  149 (337)
                      ..++++++.||..++..++.++.   .++++....++--++.+.+...+|+|--..+.++..+...+|....   .+.++
T Consensus       806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dll  885 (1172)
T KOG0213|consen  806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL  885 (1172)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence            78999999999999999998774   5667777778888899999999999999999999999999875443   36789


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                      |.+..++++.+..|...++..++.++..-.......+.+.+++   .+|+..+.++|.+|..++|.+++.+|++.    +
T Consensus       886 PrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd----V  961 (1172)
T KOG0213|consen  886 PRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD----V  961 (1172)
T ss_pred             ccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH----H
Confidence            9999999999999999999999999876543222233444544   55678899999999999999999999974    6


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhh
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSI  304 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i  304 (337)
                      +..+++.++.+..+.|.+...+|+-.++.+|.-    .++|.+.+-..-++..|+....++++.+.+.+|+.  .+...+
T Consensus       962 LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen  962 LATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred             HHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence            667777777777888988888898888888764    57888888888999999999999999999999875  566889


Q ss_pred             hHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          305 RPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       305 ~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      .|+|...+.|.|.-.|+.|..++..++
T Consensus      1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             hHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            999999999999999999999887764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=2.7e-17  Score=150.09  Aligned_cols=291  Identities=18%  Similarity=0.242  Sum_probs=210.0

Q ss_pred             hHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---h---h
Q 019679           31 VVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---K---D  103 (337)
Q Consensus        31 l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~---~  103 (337)
                      +++.+...+.. ...+-|..|++.|..++.++..+...+.++|++..+++|+...||..|+.++..+.....   +   .
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            55666655544 346778899999999999999998889999999999999999999999998887654332   1   2


Q ss_pred             hHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH-----HhcCCchHHHHHHHHHhhHhHhh
Q 019679          104 ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE-----LAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       104 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~-----~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      .+.++++|.+..++.| ....||.+-+.+++.++.....      ++..-.+     +.++++.+       .....-..
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r------Fle~~q~~~~~g~~n~~nse-------t~~~~~~~  569 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR------FLELTQELRQAGMLNDPNSE-------TAPEQNYN  569 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH------HHHHHHHHHhcccccCcccc-------cccccccc
Confidence            3558899999999999 6678999999999998875321      1111111     12332221       00000000


Q ss_pred             hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679          178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                      .+.......+-..+..++.|+.+.||.+.+..|..++..||.+...+.+++++..+++|++|+.|.+....|..++-..|
T Consensus       570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence            01111223345566778899999999999999999999999887778899999999999999999999999988888888


Q ss_pred             hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh--hcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      .....++++|.+.+.+.|..+.|-..|+.++..+++.  +....+ ..++.....++--++.=||..++..|..++..++
T Consensus       650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls  728 (1431)
T KOG1240|consen  650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS  728 (1431)
T ss_pred             eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence            8777889999999999999999999999998888763  233322 2222222233333444589999888888887765

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.77  E-value=3.9e-16  Score=136.38  Aligned_cols=317  Identities=16%  Similarity=0.180  Sum_probs=252.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~   75 (337)
                      ++++.||+.+++.++.++..+..   +.....+--.+.+.+..++++|--..+.++..+.+.++-..   =.+.++|.+-
T Consensus       810 nksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt  889 (1172)
T KOG0213|consen  810 NKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT  889 (1172)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence            57899999999999999976643   33455677788999999999999999999988888764321   1356778887


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH---hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  152 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l  152 (337)
                      ..+.+...+|...++..++.++..-+......+.+.++.+   +++.-+.++|+++.++++-+++.+|+..+.    ..+
T Consensus       890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL----atL  965 (1172)
T KOG0213|consen  890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL----ATL  965 (1172)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH----HHH
Confidence            7888999999999999999999866654445666666555   456678899999999999999999996554    444


Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHH
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQV  230 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l  230 (337)
                      .+-++..+-+.|.+..-.++.+++.+|+-.    ++|.+++=-.-++..|+...++++..+.+..|.  ..+...+.|.+
T Consensus       966 lnnLkvqeRq~RvcTtvaIaIVaE~c~pFt----VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Pll 1041 (1172)
T KOG0213|consen  966 LNNLKVQERQNRVCTTVAIAIVAETCGPFT----VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLL 1041 (1172)
T ss_pred             HhcchHHHHHhchhhhhhhhhhhhhcCchh----hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHH
Confidence            444444445567777777888888888754    778888777889999999999999999998875  33566789999


Q ss_pred             HHhhcCcchHHHHHHHHHHHHhc---cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHH
Q 019679          231 LEMINNPHYLYRMTILQAISLLA---PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC  307 (337)
Q Consensus       231 ~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~  307 (337)
                      .+.+.|++.-+|++++..+..++   ..+|.+....+++.+++.-.-+++|.|.++...++..+...+|+..+..++...
T Consensus      1042 eDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QG 1121 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQG 1121 (1172)
T ss_pred             HHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence            99999999999999999999886   345667778899999999999999999999999999999999998777776655


Q ss_pred             HHhhhCCCCccHHHHHHHHHHHH
Q 019679          308 LVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       308 l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      |-    -+...||..-.+..+.+
T Consensus      1122 LF----HParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1122 LF----HPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             cc----CcHHHHHHHHHHHHHhH
Confidence            43    35666776666555544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.77  E-value=3.8e-16  Score=142.22  Aligned_cols=317  Identities=17%  Similarity=0.124  Sum_probs=224.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ++...|+.+--.+..+...-++  ...-..+.+.+-+.++++.+|..|+.+++.+.    ..+..+.+.|.+.+++.|++
T Consensus        54 ~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~  127 (526)
T PF01602_consen   54 KDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPS  127 (526)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCc
Confidence            4455555555555544432111  11236777778888888999999988888775    23455678888889999999


Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCCc
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~~  160 (337)
                      |.||+.|+.++..+....++..... +++.+.+++.|+++.|+.+|+..+..+ +..+..  .+.+.+.+.+.+.+.+.+
T Consensus       128 ~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~  205 (526)
T PF01602_consen  128 PYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPD  205 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCS
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccc
Confidence            9999999999999887655432223 789999999999999999999988888 221111  334556666666667888


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      +..+..+++.+..++..-........+++.+...+.+.++.|+..+++++..+...   ......+++.+..++.+++..
T Consensus       206 ~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~n  282 (526)
T PF01602_consen  206 PWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPN  282 (526)
T ss_dssp             HHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHH
T ss_pred             hHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccch
Confidence            88888888888776644322211146888888888899999999998888865432   224667889999999999999


Q ss_pred             HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCC-CccH
Q 019679          241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP-DVDV  319 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~-~~~v  319 (337)
                      +|..++.++..++.......+  .....+..+..+++..+|..++..+..++..-    ....+++.|...+.+. +.++
T Consensus       283 vr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~----n~~~Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  283 VRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANES----NVKEILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHC--HHH
T ss_pred             hehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhccccc----chhhHHHHHHHHHHhccchhh
Confidence            999999999999876522222  33333444455888999999999998887632    2355777777777444 7889


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 019679          320 RFFATQALQSKDQVMMS  336 (337)
Q Consensus       320 r~~a~~al~~l~~~~~~  336 (337)
                      |..++++++.++..+..
T Consensus       357 ~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHHHHHHHHHHHHGS
T ss_pred             hhhHHHHHHHHHhccCc
Confidence            99999999999987754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.9e-16  Score=133.14  Aligned_cols=316  Identities=16%  Similarity=0.147  Sum_probs=242.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            5 WRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ...|..+..+.......+|+..-  .-+++|.+.....|..+.||.++..+...+...++...+...+.+.+..+..+ .
T Consensus       189 ~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~-k  267 (569)
T KOG1242|consen  189 ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA-K  267 (569)
T ss_pred             hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH-h
Confidence            34455677788888888886442  23678888888899999999999999999999988887655455555555555 9


Q ss_pred             HHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679           83 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~  160 (337)
                      |+..+++++.++.++...+...  ....++|.+.+.+.|..++||+++..++..+++.+....+ +.++|.+.+.+.|++
T Consensus       268 WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp~  346 (569)
T KOG1242|consen  268 WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADPS  346 (569)
T ss_pred             hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCcc
Confidence            9999999999999998777644  4578999999999999999999999999999999887765 789999999999998


Q ss_pred             hHHHHHHHHHhh-HhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-ChHH---HHhhHHHHHHHhhc
Q 019679          161 WRVRLAIIEYIP-LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDW---AMQHIVPQVLEMIN  235 (337)
Q Consensus       161 ~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~---~~~~l~~~l~~~~~  235 (337)
                      ..+..+.-.... .++..... .....++|++-+.+.+.+...+..++..++.++... ++.+   +...++|-+...+.
T Consensus       347 ~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~  425 (569)
T KOG1242|consen  347 CYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLD  425 (569)
T ss_pred             cchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhc
Confidence            666655433222 22333333 345679999999999999999999999999999887 4433   46678888888888


Q ss_pred             CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh-hhC
Q 019679          236 NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSE  313 (337)
Q Consensus       236 ~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~  313 (337)
                      ++-+.+|..+.++++.+.+..|...+ ....|.+...+.++.. .-|..+++.++.+....+-+.+ ..++|.+.. ...
T Consensus       426 d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~-~~~~~~~~a~~~~  503 (569)
T KOG1242|consen  426 DAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV-EDILPEILANASS  503 (569)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH-HHHHHHHHHHHhh
Confidence            99899999999999999998887766 7888999998876654 4566788888888887776654 344444433 332


Q ss_pred             -CCCccHHHHHHH
Q 019679          314 -DPDVDVRFFATQ  325 (337)
Q Consensus       314 -d~~~~vr~~a~~  325 (337)
                       ..++.+|.....
T Consensus       504 ~~~~~~~~dg~~~  516 (569)
T KOG1242|consen  504 VLIDERIRDGVIW  516 (569)
T ss_pred             ccchhhhccCeee
Confidence             233444443333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=7.6e-16  Score=130.69  Aligned_cols=334  Identities=15%  Similarity=0.132  Sum_probs=260.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccchHH----HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhh
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP----AYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCV   74 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~----~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l   74 (337)
                      .|+.+.-|++++.-+..+.+.+-......++=.    ...++..+++..-|++++..++..+-.++.+  .+...++|.+
T Consensus        10 tdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv   89 (675)
T KOG0212|consen   10 TDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPV   89 (675)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHH
Confidence            378889999999999999987765444333322    4445556677778889998888887777665  4667789999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccChhhH--HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch----hhHHhhH
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSL  148 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l  148 (337)
                      ..++.|.+.+||..||+.+.++++....+..  .+.+...++++..|++..||.+ +..+..+.+.+-.    ..-.+.+
T Consensus        90 ~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~  168 (675)
T KOG0212|consen   90 LNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFSLPEF  168 (675)
T ss_pred             HHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccCHHHH
Confidence            9999999999999999999999987765542  3788899999999999999965 4556666655432    1225789


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HH-HH
Q 019679          149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DW-AM  223 (337)
Q Consensus       149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~  223 (337)
                      +|.+.+.+...++..|...++++..+-...+-+.  +.+.+++.++++|+|++.+||..+-.+++.+...+..  .. -.
T Consensus       169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~  248 (675)
T KOG0212|consen  169 IPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDY  248 (675)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence            9999999999999999999999998877665554  6788999999999999999999999999999877643  22 24


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHHHH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSVV  300 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~~~  300 (337)
                      ...++.+...+.+++...+..|+.++..+....|...  +.+.++..++.++.|..+ .++..+...-+.+.+.++.+..
T Consensus       249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~  328 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERL  328 (675)
T ss_pred             ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence            5677888888888999999999999999998887653  456777888888888877 5777666555555554443321


Q ss_pred             -----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          301 -----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       301 -----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                           ...++..+.+.+.+...+.|..+.+.+..+-..++
T Consensus       329 ~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p  368 (675)
T KOG0212|consen  329 KEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP  368 (675)
T ss_pred             ccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc
Confidence                 24688888888888899999999999888776654

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.75  E-value=8.2e-16  Score=131.91  Aligned_cols=177  Identities=19%  Similarity=0.225  Sum_probs=144.7

Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAM  223 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  223 (337)
                      .++|.+..++.+++..+....+..++.++...+...-..+.+.+++   ..|+..+.++|..|..++|-+++.+|++.  
T Consensus       688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd--  765 (975)
T COG5181         688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD--  765 (975)
T ss_pred             hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH--
Confidence            4777777788888888999999999988876433222223444444   45678899999999999999999999984  


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVE  301 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~  301 (337)
                        ++..+++.++.+..+.|.+...+++-.++++|+-    .++|.+..-...++..|+....+++..+.+.+|+.  .+.
T Consensus       766 --vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv  839 (975)
T COG5181         766 --VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV  839 (975)
T ss_pred             --HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence              5666777777778889999999999999988874    57788888888999999999999999999999876  567


Q ss_pred             HhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          302 KSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      ..+.|.|...+.|.|+-.|+.|...+..+.
T Consensus       840 y~itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         840 YSITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             HHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            889999999999999999999988776654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=6e-15  Score=129.43  Aligned_cols=333  Identities=16%  Similarity=0.202  Sum_probs=250.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |++|..-+++..+|.-++...|.+.. ++++|++.+-++.+++.-|.+++.+++.+.+.-.++   .+....+|.+..+.
T Consensus       337 ~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm  415 (859)
T KOG1241|consen  337 DDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLM  415 (859)
T ss_pred             cccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHh
Confidence            67799999999999999999999885 699999999999999999999999999998876655   34456788888888


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch-----------hh
Q 019679           79 SDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------DL  143 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----------~~  143 (337)
                      .|++-.||.++.+++|.+++.++.    +.....+++.+.+-++| .|.|-.+++.++..+++....           ..
T Consensus       416 ~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~  494 (859)
T KOG1241|consen  416 SDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATP  494 (859)
T ss_pred             cCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccch
Confidence            999999999999999999987653    33345566677777766 589999999999998876532           11


Q ss_pred             HHhhHHHHHHHHhc--C-CchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHH---------Hcc----ccchHHHHH
Q 019679          144 LSQSLLPAIVELAE--D-RHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQ---------WLK----DKVYSIRDA  205 (337)
Q Consensus       144 ~~~~llp~l~~~~~--d-~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~---------~l~----d~~~~vr~~  205 (337)
                      +.+.++..|.+...  | .+...|.++.++|..+++......+.  ..+.+..+.         .++    +....+...
T Consensus       495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~  574 (859)
T KOG1241|consen  495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL  574 (859)
T ss_pred             hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence            22333333333322  2 45689999999999999988765421  122222222         111    122356667


Q ss_pred             HHHHHHHHHHHhChH--HHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhc-cCCChh
Q 019679          206 AANNVKRLAEEFGPD--WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINAS-KDRVPN  279 (337)
Q Consensus       206 a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~  279 (337)
                      .+..|..+...++++  ...+.++..+..+++. ++.-+...++.+++.++..+|+.+  +.+.+.|++...| +-....
T Consensus       575 Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~q  654 (859)
T KOG1241|consen  575 LCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQ  654 (859)
T ss_pred             HHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHH
Confidence            778888888888764  2466788899999987 557788899999999999998764  6788999999999 555679


Q ss_pred             HHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679          280 IKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       280 vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~  336 (337)
                      |..+++...+.++..++.+  .+.+.++..|...+..+  +.+|+-.....++.++-+.|.
T Consensus       655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~  715 (859)
T KOG1241|consen  655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA  715 (859)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence            9999999999999999876  34556666666665543  345677777888888877664

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.74  E-value=5.7e-15  Score=145.19  Aligned_cols=327  Identities=13%  Similarity=0.118  Sum_probs=254.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHh
Q 019679            4 SWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKEL   77 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l   77 (337)
                      +..+|..++.++..++..-..   .......+|.+.+++.+++..+++.++..++.++......   ......+|.+.++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            457888888888887743211   1112346899999999999999999999999987643322   2334589999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccCh--hhH-HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                      +..++.++|+.|++++++++..-.+  ... ....+|.+.+++++.++.++..++.++..+......+     .++.+..
T Consensus       497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~  571 (2102)
T PLN03200        497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTA  571 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHH
Confidence            9999999999999999999873211  112 2367899999999999999999999999998754332     3466777


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChhhH------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhh
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQH  225 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~  225 (337)
                      ++...+..++..++..++.+......+..      ....+|.+.++++.++..+++.|+..|..++..-..   ......
T Consensus       572 LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag  651 (2102)
T PLN03200        572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE  651 (2102)
T ss_pred             HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence            78878888888889888888665543321      134789999999999999999999999998763211   123456


Q ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--H
Q 019679          226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V  299 (337)
Q Consensus       226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~  299 (337)
                      .+|.++.++.+.+..+|..++++++.+......+.    .....+|.+.+++++++..++..++.+|..+...-...  .
T Consensus       652 aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei  731 (2102)
T PLN03200        652 IINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEA  731 (2102)
T ss_pred             CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHH
Confidence            78999999999999999999999999986433221    23457899999999999999999999999998765433  3


Q ss_pred             HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          300 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       300 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      .....++.|.+++++.++++|..|+.+|..+...+.
T Consensus       732 ~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        732 LAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            346678999999999999999999999999887654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=5.4e-15  Score=126.93  Aligned_cols=328  Identities=18%  Similarity=0.148  Sum_probs=247.1

Q ss_pred             HHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            7 VRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      .+..+...+..+......    ......++|.+.+.+. +.++.++..|+.+|..++......   -.....+|.+.+++
T Consensus        82 ~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll  161 (514)
T KOG0166|consen   82 QQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL  161 (514)
T ss_pred             HHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence            355555555555433221    1123468999999995 677999999999999999865544   23455789999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCCh-hHHHHHHHhHHHhHhhhchh---hHHhhHHHH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID---LLSQSLLPA  151 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~~llp~  151 (337)
                      .+++..||+.++++||+++...+.   ......+++.++.++...++ ...+.+..++..++..-.+.   .....++|.
T Consensus       162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~  241 (514)
T KOG0166|consen  162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA  241 (514)
T ss_pred             cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            999999999999999999864432   12224577888888877665 67778899999998765321   334789999


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhh
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQH  225 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~  225 (337)
                      +..++.+.+..|..-++.+++.++..-...   .....+.|.+..+|...+..|+..|++++|.+...-+.+   .+...
T Consensus       242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~  321 (514)
T KOG0166|consen  242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG  321 (514)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC
Confidence            999999999999999999999888654332   133468899999999999999999999999977543322   12446


Q ss_pred             HHHHHHHhhc-CcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---
Q 019679          226 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---  298 (337)
Q Consensus       226 l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---  298 (337)
                      .+|.+..++. ++...+|..|++.++.+......   ......++|.+..+++.....+|+.|+.+++.+...-.++   
T Consensus       322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~  401 (514)
T KOG0166|consen  322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIK  401 (514)
T ss_pred             hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHH
Confidence            7899999998 66677999999999998763221   2234568999999999999999999999999997654443   


Q ss_pred             H-HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          299 V-VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       299 ~-~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      + +..-+++.|..++.-+|.++-..+..+++.+..+.
T Consensus       402 yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  402 YLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG  438 (514)
T ss_pred             HHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            1 23448888888887777777778888888876653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.71  E-value=1.2e-14  Score=132.37  Aligned_cols=295  Identities=17%  Similarity=0.149  Sum_probs=226.5

Q ss_pred             hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679           22 VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG  101 (337)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  101 (337)
                      .|.+.  +...+.+.+++.+++...|+.+...+..+...-+.  ..-.+...+.+-++++++.+|..|+.+++.+..   
T Consensus        36 ~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---  108 (526)
T PF01602_consen   36 LGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---  108 (526)
T ss_dssp             TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---
T ss_pred             cCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---
Confidence            45544  47899999999999999999999888888765333  223466677778899999999999999999884   


Q ss_pred             hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh
Q 019679          102 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  181 (337)
Q Consensus       102 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  181 (337)
                       ....+.+.|.+.+++.|+++.||+.|+.++..+.+.. ++.....++|.+.+++.|+++.|+.+++..+..+ +.-+..
T Consensus       109 -~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~  185 (526)
T PF01602_consen  109 -PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDS  185 (526)
T ss_dssp             -HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHH
T ss_pred             -cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcch
Confidence             4456789999999999999999999999999998873 3433222799999999999999999999999888 211111


Q ss_pred             --hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH--hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679          182 --FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       182 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                        ...+.+.+.+.+.+.+.+++++...++.+..+...- .. ..  ..+++.+...+.+.++.++..++.++..+.... 
T Consensus       186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~-~~-~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-  262 (526)
T PF01602_consen  186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME-PE-DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-  262 (526)
T ss_dssp             HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-
T ss_pred             hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC-hh-hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-
Confidence              345667777777779999999999999988765432 11 22  468888888888888999999998888766532 


Q ss_pred             hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                        .....+++.+..++.++++++|..+++++..++....+. +. .....+..+..|++..||..+.+.+..++..
T Consensus       263 --~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  263 --ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             --HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             --HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence              256788999999999999999999999999998876332 22 2222333455588999999999988887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.71  E-value=1.9e-14  Score=123.68  Aligned_cols=313  Identities=15%  Similarity=0.140  Sum_probs=244.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~   75 (337)
                      ++.+.||..+++.++.++..+.   +......+-..+.+.+...+++|--..+.++..+.+..+-..   =...++|.+-
T Consensus       615 ~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt  694 (975)
T COG5181         615 SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLT  694 (975)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccccc
Confidence            4678999999999999987665   333344566778888988899998888888887766543321   1245778887


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  152 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l  152 (337)
                      ..+.+...+|....+..++.++...+...-..+.+.+..++   ++.-+.++|++|..+++-+++.+|++.+    +..+
T Consensus       695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdv----L~~L  770 (975)
T COG5181         695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDV----LDIL  770 (975)
T ss_pred             HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHH----HHHH
Confidence            78888999999999999999997666544455666665554   5667899999999999999999998654    4444


Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHH
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQV  230 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l  230 (337)
                      .+-++..+-+.|.+..-.++.+++.+|+-.    ++|.++.=-+.++..|+...++++..+.+..|..  .+...+.|.+
T Consensus       771 lnnLkvqeRq~RvctsvaI~iVae~cgpfs----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPll  846 (975)
T COG5181         771 LNNLKVQERQQRVCTSVAISIVAEYCGPFS----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLL  846 (975)
T ss_pred             HhcchHHHHHhhhhhhhhhhhhHhhcCchh----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            444555555677777788888999998854    6788777677789999999999999999998764  3466789999


Q ss_pred             HHhhcCcchHHHHHHHHHHHHhccc---cChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHH
Q 019679          231 LEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC  307 (337)
Q Consensus       231 ~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~  307 (337)
                      .+.+.|++.-+|+++...+..++-.   .|.+...-+++.+++.-.-+++|.|..+.-..+..++..+|+..+..++...
T Consensus       847 eDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qG  926 (975)
T COG5181         847 EDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQG  926 (975)
T ss_pred             HhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9999999999999999999988643   3456667789999999999999999999999999999999987665555543


Q ss_pred             HHhhhCCCCccHHHHHHHH
Q 019679          308 LVELSEDPDVDVRFFATQA  326 (337)
Q Consensus       308 l~~l~~d~~~~vr~~a~~a  326 (337)
                      |    .-++..||..=...
T Consensus       927 L----FHPs~~VRk~ywtv  941 (975)
T COG5181         927 L----FHPSSTVRKRYWTV  941 (975)
T ss_pred             c----cCchHHHHHHHHHH
Confidence            3    44677787544433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.8e-14  Score=123.84  Aligned_cols=302  Identities=16%  Similarity=0.178  Sum_probs=230.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--H-H-HHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh--
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--P-E-LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD--  103 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~-~-~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~--  103 (337)
                      ..+...+.+.+.++..+..+...+.++.+.-.  + + .+...++|.+.+++. +.++.++..++++|.+++..-...  
T Consensus        67 ~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~  146 (514)
T KOG0166|consen   67 NLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK  146 (514)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence            46666777777788778888888887765432  2 2 234468888877775 778999999999999999744322  


Q ss_pred             -hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hHHhhHHHHHHHHhcCCch-HHHHHHHHHhhHhHhhh
Q 019679          104 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQL  178 (337)
Q Consensus       104 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~  178 (337)
                       ......+|+|..++.+++..|++.|+.+|+.++.....  + .+...+++.+..++..... .....+..+++.++...
T Consensus       147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk  226 (514)
T KOG0166|consen  147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK  226 (514)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence             23357889999999999999999999999999876331  1 2233455666666655443 66777788888888776


Q ss_pred             Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679          179 GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISL  251 (337)
Q Consensus       179 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~  251 (337)
                      .+.   .....++|.+..++.+.+.+|...|+.++..++..- ++.    +...++|.+.+++.+++..++..+++++|.
T Consensus       227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~-ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS-NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            322   245679999999999999999999999999998653 332    234688999999999999999999999999


Q ss_pred             hccccChH---HHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHH
Q 019679          252 LAPVMGSE---ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFAT  324 (337)
Q Consensus       252 l~~~~~~~---~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~  324 (337)
                      ++..-+..   ......+|.+..++. .+...+|..|+.++++|+..-..+   .+...++|.|..++...+-++|..|+
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            87554422   234468899999998 566679999999999997632221   44567999999999988999999999


Q ss_pred             HHHHHHHHh
Q 019679          325 QALQSKDQV  333 (337)
Q Consensus       325 ~al~~l~~~  333 (337)
                      +|++.+.+.
T Consensus       386 waIsN~ts~  394 (514)
T KOG0166|consen  386 WAISNLTSS  394 (514)
T ss_pred             HHHHhhccc
Confidence            999987653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.69  E-value=4.9e-14  Score=138.78  Aligned_cols=326  Identities=14%  Similarity=0.171  Sum_probs=250.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HH-HHhhhHhhHH
Q 019679            3 KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LA-IQHILPCVKE   76 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~-~~~ll~~l~~   76 (337)
                      .+..+|+.++..++.++..-..   .......+|.+.+++.+++..+|+.|+.+++.++..-...  .+ ....+|.+.+
T Consensus       458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~  537 (2102)
T PLN03200        458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW  537 (2102)
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence            4678899999999988753222   1123468999999999999999999999999998742111  22 2357888889


Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH------HhhHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLP  150 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~llp  150 (337)
                      ++++.+++++..++.+|.++.....     ...++.+..++..+++.++..++..++.+......+..      ....+|
T Consensus       538 LL~sgd~~~q~~Aa~AL~nLi~~~d-----~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~  612 (2102)
T PLN03200        538 LLKNGGPKGQEIAAKTLTKLVRTAD-----AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALR  612 (2102)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence            9999999999999999999976432     23447778888888899999999999988775544321      135789


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HH
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AM  223 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~  223 (337)
                      .+.+++++.+..++..++..+..++..-..   .......+|.++.++++.+..+++.++.+|+.+......+.    ..
T Consensus       613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~  692 (2102)
T PLN03200        613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA  692 (2102)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999988764322   22345678999999999999999999999999986432221    23


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH-H
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V  300 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-~  300 (337)
                      ...+|.+++++++.+..++..++.++..++..-..  +......++.+..++.+.++++|..|+.+|..++.....+. +
T Consensus       693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~  772 (2102)
T PLN03200        693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL  772 (2102)
T ss_pred             cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence            45889999999999999999999999999865532  23445779999999999999999999999999998876443 1


Q ss_pred             -----HHhhhHHHHhhhCCCCccHHHH--HHHHHHHHHHh
Q 019679          301 -----EKSIRPCLVELSEDPDVDVRFF--ATQALQSKDQV  333 (337)
Q Consensus       301 -----~~~i~~~l~~l~~d~~~~vr~~--a~~al~~l~~~  333 (337)
                           ..-.+..|..+++..+.+.-..  |..+|..+++.
T Consensus       773 ~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~  812 (2102)
T PLN03200        773 KDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART  812 (2102)
T ss_pred             HHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence                 1234555556666666666554  78888877764

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.69  E-value=2.5e-13  Score=116.04  Aligned_cols=331  Identities=13%  Similarity=0.085  Sum_probs=245.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCHHHHHHh---hhHhhH--H
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPELAIQH---ILPCVK--E   76 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~~~~~~~---ll~~l~--~   76 (337)
                      +.|+.-.++++.++.++..--|.-.|+.++..+..-..|++| .++..++.+++.+++.-.|+...+.   ++--+.  .
T Consensus       106 ~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga  185 (858)
T COG5215         106 PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGA  185 (858)
T ss_pred             CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhh
Confidence            567777889999999999888888889999888888888775 5788899999999998888643322   332222  2


Q ss_pred             hcCCCcHHHHHHHHHHHHh-cCc---ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679           77 LSSDSSQHVRSALATVIMG-MAP---ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL  149 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~-l~~---~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll  149 (337)
                      +-+.++..||.+++.+|.. +..   .+..+.....++...++.-+.++.++..+++-++..+....-.   ..+.+.+.
T Consensus       186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~  265 (858)
T COG5215         186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA  265 (858)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999987 322   3333445678889999999999999999999999988765421   11223344


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhh-Chh------------------hHHHHHHHHHHHHcc-------ccchHHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG------------------FFDDKLGALCMQWLK-------DKVYSIR  203 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~------------------~~~~~l~~~l~~~l~-------d~~~~vr  203 (337)
                      ........+.+.+|...+++..+.+++.- +.+                  .....++|.++++|.       +++|++-
T Consensus       266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s  345 (858)
T COG5215         266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS  345 (858)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence            44456668888999999999988877542 100                  012347888888884       3678999


Q ss_pred             HHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhH
Q 019679          204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNI  280 (337)
Q Consensus       204 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~v  280 (337)
                      .+|..+|..+.+..|.. +.+.++.++.+.+.+++|+.|.+++.++|++.+.-...   .+.+..+|.+.....|+.-.|
T Consensus       346 maA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~v  424 (858)
T COG5215         346 MAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWV  424 (858)
T ss_pred             hhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeeh
Confidence            99999999999988754 56669999999999999999999999999998765543   345677888899999999999


Q ss_pred             HHHHHHHHHHHhhhhcHHHH-HHhhhHHHHh---hhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          281 KFNVAKVLQSLIPIVDQSVV-EKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       281 r~~a~~~l~~i~~~~~~~~~-~~~i~~~l~~---l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +..++.++++++.++....- ..++.+....   -+.| .+.+-..+.++...+..++.
T Consensus       425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a  482 (858)
T COG5215         425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIA  482 (858)
T ss_pred             hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhh
Confidence            99999999999987643211 0122222222   2334 66777788888888777664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.68  E-value=7.5e-14  Score=125.25  Aligned_cols=323  Identities=16%  Similarity=0.142  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHHHhCCCCc--ccchHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhc---
Q 019679            9 YMVANQLYELCEAVGPEPT--RSDVVPAYVRLL---RDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELS---   78 (337)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~---   78 (337)
                      +.-+++++.++...|....  .+.++|.+.+++   +..+++.|+.+++++..|...++.+.  +.+.++..+.+.+   
T Consensus       231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYD  310 (1233)
T KOG1824|consen  231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYD  310 (1233)
T ss_pred             HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccC
Confidence            4567889999998887654  457999999999   77889999999999999999988763  2222333322211   


Q ss_pred             -------------------------------CCCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHH
Q 019679           79 -------------------------------SDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVR  125 (337)
Q Consensus        79 -------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr  125 (337)
                                                     +|-+|+||++|++++..+.....+.  .+.+.+-|.+..-+++.+..|+
T Consensus       311 PNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk  390 (1233)
T KOG1824|consen  311 PNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVK  390 (1233)
T ss_pred             CCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHH
Confidence                                           1457999999999999887544322  2446788899999999999999


Q ss_pred             HHHHHhHHHhHhhhch--------h-----------h-H---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--
Q 019679          126 LNIISKLDQVNQVIGI--------D-----------L-L---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--  180 (337)
Q Consensus       126 ~~a~~~l~~l~~~~~~--------~-----------~-~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--  180 (337)
                      .-.+.++-.+....++        +           . +   ...+...+.+...+++...|..++..+..++..++.  
T Consensus       391 ~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l  470 (1233)
T KOG1824|consen  391 ADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL  470 (1233)
T ss_pred             HHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh
Confidence            9999888877766542        0           0 1   123555555556677778899999999988877633  


Q ss_pred             hhHHHHHHHHHHHHccccc--hHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679          181 GFFDDKLGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  255 (337)
Q Consensus       181 ~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~  255 (337)
                      ..+.+.++|.+...+.|.+  ...+..++..+.......+++.+   ...+.|.+.....|+.+.+-.-|+...+.++..
T Consensus       471 ~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkv  550 (1233)
T KOG1824|consen  471 AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKV  550 (1233)
T ss_pred             hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHH
Confidence            3456778999999999865  46788888888777777776643   556788888888999888877777777776543


Q ss_pred             ---------cChHHHHhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCccHHHH
Q 019679          256 ---------MGSEITCSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVRFF  322 (337)
Q Consensus       256 ---------~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr~~  322 (337)
                               ++...+...++...++.+  +|.+.+||.+|+.+++++...+|...  ....++|.+.+=+  ...-.|..
T Consensus       551 irpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl--~nEiTRl~  628 (1233)
T KOG1824|consen  551 IRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERL--GNEITRLT  628 (1233)
T ss_pred             hcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH--hchhHHHH
Confidence                     344455666777766666  67778999999999999999988431  1233444444322  23457999


Q ss_pred             HHHHHHHHHHh
Q 019679          323 ATQALQSKDQV  333 (337)
Q Consensus       323 a~~al~~l~~~  333 (337)
                      |++|+..++..
T Consensus       629 AvkAlt~Ia~S  639 (1233)
T KOG1824|consen  629 AVKALTLIAMS  639 (1233)
T ss_pred             HHHHHHHHHhc
Confidence            99999887653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=4.6e-14  Score=120.07  Aligned_cols=295  Identities=15%  Similarity=0.206  Sum_probs=234.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~--~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~   75 (337)
                      |.+-+||..+|+.+-.+++....+..  .+++...+.++..|.+..||.++ +.+..+.+.+..+    ...+.++|.+.
T Consensus        95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~  173 (675)
T KOG0212|consen   95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLR  173 (675)
T ss_pred             CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHH
Confidence            78889999999999999998877654  46899999999999999999876 5555555544332    23567899999


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh---HHhhHHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLP  150 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~llp  150 (337)
                      .-+.+.++.+|...+..+.-+-..-+-+.  ....+++.+..+++|++++||..+-..++.+...+..+.   -.+.+++
T Consensus       174 eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~  253 (675)
T KOG0212|consen  174 ERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMIN  253 (675)
T ss_pred             HHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchh
Confidence            99999999999999999987765444332  236899999999999999999999999988887775322   1356788


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHhChHH-----H
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW-----A  222 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~-----~  222 (337)
                      .+..-.+.+++.++..++.++..+.+..|...  +...++..+++++.|+.. .+++.+...-+.+...++.+.     .
T Consensus       254 vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id  333 (675)
T KOG0212|consen  254 VLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEID  333 (675)
T ss_pred             hccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            88888889999999999999999999988764  445666677777888776 578777766655555544322     2


Q ss_pred             HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ...++..+...+.+.....|.+++.++..+-...+.+.  ....+++.+++.++|++.+|-..+...++.++..-..
T Consensus       334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            34678888889999999999999999999987777654  3567999999999999999999999999988865443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=7.2e-14  Score=130.88  Aligned_cols=327  Identities=16%  Similarity=0.145  Sum_probs=235.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELS   78 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~   78 (337)
                      ..|..|+.++..++.+++..+.+.  +.+.++|-+.++-.||+..|+.+....+..+...-.  .+.+...++.-+..-+
T Consensus       969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen  969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred             chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999998755  356899999999999999999999988887755311  1234445555555567


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---hcCCChhHHHHHHHhHHHhHhhh---c-------hhhHH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVI---G-------IDLLS  145 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~  145 (337)
                      .+..|+||+++|-++..+.+..+.+...+.+..++..+   ..|-...||.++=.+...+.+.+   .       .....
T Consensus      1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l 1128 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL 1128 (1702)
T ss_pred             cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH
Confidence            89999999999999999998777666555555554444   44656789988766655554432   1       12344


Q ss_pred             hhHHHHHHH-HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHH------------------
Q 019679          146 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRD------------------  204 (337)
Q Consensus       146 ~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~------------------  204 (337)
                      ..++|.+.. ..-++-..+|..++..+..+++..|...  +.++++|.+++....-++.|-.                  
T Consensus      1129 ~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R 1208 (1702)
T KOG0915|consen 1129 DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLR 1208 (1702)
T ss_pred             HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHH
Confidence            678888764 2346778899999999999999998754  6788999998887665544332                  


Q ss_pred             -HHHH------HHHHHHHHhChHHHHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhcc
Q 019679          205 -AAAN------NVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASK  274 (337)
Q Consensus       205 -~a~~------~l~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~  274 (337)
                       .+++      +++.....++ ....+.++|.+.+..... .-..|..+...+..++..+|.+  ++..+++..++..+.
T Consensus      1209 ~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~ 1287 (1702)
T KOG0915|consen 1209 ASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAK 1287 (1702)
T ss_pred             HhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccc
Confidence             1111      1222222222 124667889999988764 3567888999999998888865  567889999999999


Q ss_pred             CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          275 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       275 d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      |.++.+|++.+.+.+.+++.-.++.....+-..+..++.+.+..- ..++..+..++
T Consensus      1288 dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~Ia 1343 (1702)
T KOG0915|consen 1288 DRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISNIA 1343 (1702)
T ss_pred             cccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHHHH
Confidence            999999999999999999988877665555555555555544322 44444444333

>PTZ00429 beta-adaptin; Provisional

Probab=99.66  E-value=1e-12  Score=120.54  Aligned_cols=299  Identities=14%  Similarity=0.068  Sum_probs=187.0

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      ...+++.+.+++..++.++|+.....+..+++..+...  -..+..+.+-++|+|+.+|-.|++.++.+..    ....+
T Consensus        66 vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e  139 (746)
T PTZ00429         66 VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCIRV----SSVLE  139 (746)
T ss_pred             chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc----HHHHH
Confidence            36788888899999999999999888888776543322  2346677778889999999999999888775    34557


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh-HHHH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDK  186 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~  186 (337)
                      .+++.+.+.+.|.++.||+.|+-++..+.+..+.......+++.+.+++.|+++.|...++..+..+.+..+... ....
T Consensus       140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~  219 (746)
T PTZ00429        140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE  219 (746)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence            788888889999999999999999988876543221224577888888899999999888888888765432211 1122


Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH---h
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---S  263 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~---~  263 (337)
                      .+.-+.+.+.+-+.+-+-..+..+......  .+.-...++..+...+++.+..|-..++.++-.+......+...   .
T Consensus       220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~  297 (746)
T PTZ00429        220 WVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV  297 (746)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            333334444444444444444444321100  01112345555555566666666666666666655443322111   1


Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--------------------------------HHHHHhhhHHHHhh
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--------------------------------SVVEKSIRPCLVEL  311 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------------------------------~~~~~~i~~~l~~l  311 (337)
                      .+.+.+..+ ....+++|..+.+.+..+......                                +.....++.-|.+.
T Consensus       298 rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eY  376 (746)
T PTZ00429        298 RVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEY  376 (746)
T ss_pred             HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence            122333333 233455666555555544432210                                11124456666677


Q ss_pred             hCCCCccHHHHHHHHHHHHHHhhh
Q 019679          312 SEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       312 ~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      ..|.+.+++..++++++.++..+.
T Consensus       377 a~d~D~ef~r~aIrAIg~lA~k~~  400 (746)
T PTZ00429        377 ASGVDMVFVVEVVRAIASLAIKVD  400 (746)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHhCh
Confidence            778888999999999999987654

>PTZ00429 beta-adaptin; Provisional

Probab=99.63  E-value=2.3e-12  Score=118.32  Aligned_cols=295  Identities=14%  Similarity=0.122  Sum_probs=195.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +..+|+.+--.+..+++.-+...  --.++.+.+-+.|+|+.+|..|+.+++.+    ....+.+.+++.+++.+.|+++
T Consensus        81 d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~p  154 (746)
T PTZ00429         81 DLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDP  154 (746)
T ss_pred             CHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCH
Confidence            45566666666655543211111  12478888999999999999999988854    3345667888999999999999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh-------------------h-
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-------------------L-  143 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------------------~-  143 (337)
                      .||++|+-++.++....++......+++.+.+++.|+++.|..+|+.++..+.+..+..                   . 
T Consensus       155 YVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW  234 (746)
T PTZ00429        155 YVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEW  234 (746)
T ss_pred             HHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChH
Confidence            99999999999988766643334567888999999999999999999888776432100                   0 


Q ss_pred             ------------------HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH---HHHHHHHHHHccccchHH
Q 019679          144 ------------------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSI  202 (337)
Q Consensus       144 ------------------~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~v  202 (337)
                                        -...++..+...+++.+..|..+++.++-.+.....++...   ..+.+.++.+ ...++++
T Consensus       235 ~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~ei  313 (746)
T PTZ00429        235 GQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAET  313 (746)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccH
Confidence                              01124444455556677777777777766665543322211   1233444444 4566788


Q ss_pred             HHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHH
Q 019679          203 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF  282 (337)
Q Consensus       203 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  282 (337)
                      |..+++.+..+.... +..+.. -+..+.-..+|+.+ +|...+..+..++..-+-    ..++.-+..+..|.+.+++.
T Consensus       314 qyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r  386 (746)
T PTZ00429        314 QYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVV  386 (746)
T ss_pred             HHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHH
Confidence            999998888777654 332222 23444444566664 788888888887654332    34556666777788888889


Q ss_pred             HHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC
Q 019679          283 NVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  314 (337)
Q Consensus       283 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d  314 (337)
                      .++++++.++..+..  ..+.++..|..++.+
T Consensus       387 ~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~  416 (746)
T PTZ00429        387 EVVRAIASLAIKVDS--VAPDCANLLLQIVDR  416 (746)
T ss_pred             HHHHHHHHHHHhChH--HHHHHHHHHHHHhcC
Confidence            999999998876653  335566666665554

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.61  E-value=1.3e-12  Score=117.54  Aligned_cols=331  Identities=16%  Similarity=0.140  Sum_probs=224.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhc---
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS---   78 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~---   78 (337)
                      .-||+.++.+++.++...+.+.. .++...+...+. ..++..-+.-+.+++.++...+..  .+...++|.+.+.+   
T Consensus       188 ~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~  266 (1233)
T KOG1824|consen  188 LAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI  266 (1233)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence            35788888888888877776664 445555444443 344555556667777777665543  34556778877777   


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhh----------------------------------cCCCh
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLL----------------------------------KDEFP  122 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l----------------------------------~d~~~  122 (337)
                      +..+...|+.++++++.+...++.+...  ..++..+.+.+                                  .|-++
T Consensus       267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SW  346 (1233)
T KOG1824|consen  267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSW  346 (1233)
T ss_pred             ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhH
Confidence            6667788899999888888777765432  44555555544                                  11236


Q ss_pred             hHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh----------------h---
Q 019679          123 DVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------------G---  181 (337)
Q Consensus       123 ~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------------~---  181 (337)
                      .||++|++++..+...-.+  ..+.+.+-|.+...+++....||.-+++.+..+....+.                .   
T Consensus       347 kVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~  426 (1233)
T KOG1824|consen  347 KVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDL  426 (1233)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccch
Confidence            6899999988877654221  223456667777777888888888777766655443211                1   


Q ss_pred             hHH----HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhc
Q 019679          182 FFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLA  253 (337)
Q Consensus       182 ~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~  253 (337)
                      ...    +.++..+-.-+++.+..-|..++..|..+...+..  ......++|-+...++|.+  ...+..++.++....
T Consensus       427 ~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L  506 (1233)
T KOG1824|consen  427 SMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSAL  506 (1233)
T ss_pred             HHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHH
Confidence            011    22334444445555555677777777777766532  2235568899999998865  678888888888887


Q ss_pred             cccChHHHHhh---HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH----------HHHHHhhhHHHHhh-hCCCCccH
Q 019679          254 PVMGSEITCSQ---LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----------SVVEKSIRPCLVEL-SEDPDVDV  319 (337)
Q Consensus       254 ~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------~~~~~~i~~~l~~l-~~d~~~~v  319 (337)
                      ...+++.|.++   +.|.+.....|+.+.+-..|......+.+.+.+          +++...+.-.+..+ .+|.|.+|
T Consensus       507 ~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeV  586 (1233)
T KOG1824|consen  507 ISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEV  586 (1233)
T ss_pred             hcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHH
Confidence            77888877654   688889999999999999999999998877643          23333333334443 57899999


Q ss_pred             HHHHHHHHHHHHHhhhC
Q 019679          320 RFFATQALQSKDQVMMS  336 (337)
Q Consensus       320 r~~a~~al~~l~~~~~~  336 (337)
                      |..|+.+++.+...|||
T Consensus       587 keraIscmgq~i~~fgD  603 (1233)
T KOG1824|consen  587 KERAISCMGQIIANFGD  603 (1233)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999999986

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.52  E-value=1e-10  Score=104.65  Aligned_cols=302  Identities=17%  Similarity=0.159  Sum_probs=217.9

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh---hHHhh
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQ  108 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~  108 (337)
                      .+.+..++++.+.+.-..++..|..+.+...+........+.+...+.++++.||..+++.++.+...-...   .....
T Consensus        40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            344777787777777788889999999988888777888999999999999999999999999987644321   12367


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch-h-hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---H
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F  183 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~  183 (337)
                      +++.+..++.|++..|...|++.+..+++.-.. + .+.+...+.+.++....+..+|..+.+.+..++..-....   .
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~  199 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV  199 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999999999999999999999875322 1 1223447888888877788889888898888865532211   1


Q ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-ChHHH-HhhHHHHHHHhhcCcc--h---HHH-HHHHHHHHHhccc
Q 019679          184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDWA-MQHIVPQVLEMINNPH--Y---LYR-MTILQAISLLAPV  255 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~l~~~l~~~~~~~~--~---~vR-~~~~~~l~~l~~~  255 (337)
                      ...+++.++..+++++.-|+..++..+..++..- |.+++ ...+++.+.+.+.+..  +   ... ...+.+++.++..
T Consensus       200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence            2238888889999999999999999999998733 22333 3357888888876432  1   112 2344666666654


Q ss_pred             cChHH--HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH--------HhhhHHHHhhhCCCCccHHHHHHH
Q 019679          256 MGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--------KSIRPCLVELSEDPDVDVRFFATQ  325 (337)
Q Consensus       256 ~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~--------~~i~~~l~~l~~d~~~~vr~~a~~  325 (337)
                      -....  ..+.++..+..++...++..+..|+.++|.++.........        ..++..+-........++|..+..
T Consensus       280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~  359 (503)
T PF10508_consen  280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH  359 (503)
T ss_pred             ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            22222  23466777778888899999999999999999765443222        223333333444566789999999


Q ss_pred             HHHHHHHh
Q 019679          326 ALQSKDQV  333 (337)
Q Consensus       326 al~~l~~~  333 (337)
                      +++.+...
T Consensus       360 al~~il~~  367 (503)
T PF10508_consen  360 ALASILTS  367 (503)
T ss_pred             HHHHHHhc
Confidence            99888543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.49  E-value=3.1e-11  Score=103.47  Aligned_cols=184  Identities=24%  Similarity=0.318  Sum_probs=93.0

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      ..+.+.+.+.|+++.+|..++..++.+..        ...+|.+..++.|.++.||..+..+++.+..        +..+
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~  107 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEAV  107 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHH
Confidence            45555555555566666666655444433        2344555556666666666666665555553        2233


Q ss_pred             HHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------------CchHHHHHHHHHhhHhHhh
Q 019679          111 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------------RHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       111 ~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------------~~~~vr~~~~~~l~~l~~~  177 (337)
                      |.+.+++. |.+..||..+..+++.+...-.        ++.+....+|            ..+.+|..++..++.+.. 
T Consensus       108 ~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-  178 (335)
T COG1413         108 PPLVELLENDENEGVRAAAARALGKLGDERA--------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-  178 (335)
T ss_pred             HHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-
Confidence            44444444 5556666666666665555321        1112222222            123455555555544422 


Q ss_pred             hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679          178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL  252 (337)
Q Consensus       178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l  252 (337)
                             +...+.+.+.+.|+...||..+..+++.+....      ..+.+.+...+.+++|.+|..++..++.+
T Consensus       179 -------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         179 -------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             -------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence                   224445555556666666666666665544321      23445555555666666666665555553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=3.1e-11  Score=104.98  Aligned_cols=243  Identities=17%  Similarity=0.134  Sum_probs=168.0

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  156 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~  156 (337)
                      .++.+...|..+......++..-.... ..+.+..-+..+..|.++.||..|+.++-.+.+.+   .+.+.+.....+..
T Consensus       167 ~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~l  243 (823)
T KOG2259|consen  167 SSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHL  243 (823)
T ss_pred             hhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHh
Confidence            344555666666665555553222111 22455555778888888888888888888887732   23355667777788


Q ss_pred             cCCchHHHHHHHHHhhHhHhhhC-h-------hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHH-
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLG-V-------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV-  227 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~-~-------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~-  227 (337)
                      .|.+..||.++++.+..+++... +       ....+....-+-..+.|-++.||-.|++.+|.+.+.. .+.+.+.+- 
T Consensus       244 sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdK  322 (823)
T KOG2259|consen  244 SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDK  322 (823)
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHH
Confidence            88888888888888888877761 1       1123344445556778888888888888888776542 221111111 


Q ss_pred             -----------------------------------------------------HHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679          228 -----------------------------------------------------PQVLEMINNPHYLYRMTILQAISLLAP  254 (337)
Q Consensus       228 -----------------------------------------------------~~l~~~~~~~~~~vR~~~~~~l~~l~~  254 (337)
                                                                           ..++.-+.|..+.||.+|+.+++.++.
T Consensus       323 Klms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~  402 (823)
T KOG2259|consen  323 KLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT  402 (823)
T ss_pred             HHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc
Confidence                                                                 123333445567899999999999985


Q ss_pred             ccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          255 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       255 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      .-  ..|...-+.++..+++|+...||..|+.+|..|+.++.   +.+..++.+...+.|.+++||...-..|..
T Consensus       403 ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  403 SS--PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             CC--CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            43  33667888999999999999999999999999998854   446777888888899999999877666543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=3.3e-11  Score=113.58  Aligned_cols=333  Identities=17%  Similarity=0.182  Sum_probs=204.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhh---H
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV---K   75 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l---~   75 (337)
                      +||+..|+.+....++.+.+.-..  +...++++..+...+.+..|.||++++.+|..+...-+.+.+.+.+..+.   .
T Consensus      1008 yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1008 YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred             cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            588999999999988888764332  33456788888888888999999999999999888766665555444333   3


Q ss_pred             HhcCCCcHHHHHHHHH---HHHhcCcccC-------hhhHHhhhHHHHHHh-hcCCChhHHHHHHHhHHHhHhhhchh--
Q 019679           76 ELSSDSSQHVRSALAT---VIMGMAPILG-------KDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGID--  142 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~---~l~~l~~~~~-------~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~--  142 (337)
                      ....|-...||.++-.   .+++++-..+       .....+.++|.++.- +...-++||+.++..+-.+.+..|..  
T Consensus      1088 RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1088 RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence            3445666677776533   3333332111       112335566665542 23566778888877777777665431  


Q ss_pred             h---------------------------------------------------------------HHhhHHHHHHHHhcC-
Q 019679          143 L---------------------------------------------------------------LSQSLLPAIVELAED-  158 (337)
Q Consensus       143 ~---------------------------------------------------------------~~~~llp~l~~~~~d-  158 (337)
                      .                                                               ....++|.+.++... 
T Consensus      1168 P~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred             chhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence            0                                                               112344444444432 


Q ss_pred             CchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC
Q 019679          159 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN  236 (337)
Q Consensus       159 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~  236 (337)
                      -.-..|.+++..+..++..+|.+.  +..+++..++..++|.+..+|.+.+.+++.+.+.-.++....-+-..+...+.+
T Consensus      1248 Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1248 VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred             CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence            223457778888888888887653  667899999999999999999999999999998776654433333344444444


Q ss_pred             cchHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh-hcH-H-HHHHhhhHHHHhh
Q 019679          237 PHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQ-S-VVEKSIRPCLVEL  311 (337)
Q Consensus       237 ~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~-~-~~~~~i~~~l~~l  311 (337)
                      .+.. +..++..+..++.+...  +.+.+.++|.++-..++...+...-=-+.+..+... .|. + +..+.+.+...+.
T Consensus      1328 ~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni 1406 (1702)
T KOG0915|consen 1328 DESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENI 1406 (1702)
T ss_pred             CCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHh
Confidence            3321 12333333334433221  224567888887666655221111111222222211 111 1 3345666666677


Q ss_pred             hCCCCccHHHHHHHHHHHHHHhh
Q 019679          312 SEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       312 ~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      .++..|.+|..+++++..++.-.
T Consensus      1407 ~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1407 TNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred             ccchHHHHHHHHHHHHHHHcccc
Confidence            88888999999999998876544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.48  E-value=1.6e-10  Score=99.30  Aligned_cols=333  Identities=14%  Similarity=0.104  Sum_probs=231.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |++|.+-.++..++.-++...|.....+ ++.++.+-+..+++.-|++++.+++.+.+.-...   .+.+..+|.+....
T Consensus       339 ~DdWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m  417 (858)
T COG5215         339 GDDWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEM  417 (858)
T ss_pred             ccccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhc
Confidence            6789999999999999998888877544 8999999999999999999999999987764444   24566788888888


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHHHHhh---cCCChhHHHHHHHhHHHhHhhhchhh------H---H
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGIDL------L---S  145 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~------~---~  145 (337)
                      +|+.--|+..+++++|.++.....-... .++.+.....+   .| .|.+-.++......++.++.+-.      +   .
T Consensus       418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY  496 (858)
T COG5215         418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFY  496 (858)
T ss_pred             ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHH
Confidence            9999999999999999999766533322 34444444443   33 46677777777777777665321      1   1


Q ss_pred             hhHHHHHHHH--hcCCchHHHHHHHHHhhHhHhhhChhh------HHHH-------HHHHHHHHc--cc--cchHHHHHH
Q 019679          146 QSLLPAIVEL--AEDRHWRVRLAIIEYIPLLASQLGVGF------FDDK-------LGALCMQWL--KD--KVYSIRDAA  206 (337)
Q Consensus       146 ~~llp~l~~~--~~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~~-------l~~~l~~~l--~d--~~~~vr~~a  206 (337)
                      ..++..+...  ..+.+...|.+..+.++.++..++...      +.+.       -+.+.-+.+  +|  ...++...-
T Consensus       497 ~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~  576 (858)
T COG5215         497 LAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY  576 (858)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            2233333222  135667799999999999988775431      1111       111111111  12  123556666


Q ss_pred             HHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHH
Q 019679          207 ANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIK  281 (337)
Q Consensus       207 ~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr  281 (337)
                      +..|..+....++  +...+.++..+...+...+ ..+-.-...+++.++..+++.  .+.+.+.|++.+.++..+..|-
T Consensus       577 ~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~  656 (858)
T COG5215         577 IGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVL  656 (858)
T ss_pred             HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHH
Confidence            6777777777766  4456678888888887653 334444567788888777754  4678899999999999999999


Q ss_pred             HHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679          282 FNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       282 ~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~  336 (337)
                      ..++...+.++..+|.+  .+.+-++.-|..++..+  +.+++-.....++.++...|.
T Consensus       657 ~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga  715 (858)
T COG5215         657 NSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA  715 (858)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence            99999999999999876  33455666666655443  345666667777777776653

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.46  E-value=1.8e-10  Score=103.17  Aligned_cols=323  Identities=17%  Similarity=0.173  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHH
Q 019679            9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHV   85 (337)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~v   85 (337)
                      ..+++.|..+.....+....+.+.+.+...+.++++.||..++..++.++..-...   .....+++.+..++.|++..|
T Consensus        56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V  135 (503)
T PF10508_consen   56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV  135 (503)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence            34566777777766666556789999999999999999999999999887653221   123558899999999999999


Q ss_pred             HHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHHHhcCC
Q 019679           86 RSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDR  159 (337)
Q Consensus        86 r~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~d~  159 (337)
                      ...|++++..++..-...  .....+.+.+..++..+++.+|..+...+..+++.- ++.    ....+++.+...++++
T Consensus       136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~d  214 (503)
T PF10508_consen  136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSD  214 (503)
T ss_pred             HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCc
Confidence            999999999998744321  112344788888888878999998888888876542 222    1234788888888889


Q ss_pred             chHHHHHHHHHhhHhHhhhChhhH--HHHHHHHHHHHccc----c-chHHH-HHHHHHHHHHHHHhChHHH---HhhHHH
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKD----K-VYSIR-DAAANNVKRLAEEFGPDWA---MQHIVP  228 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d----~-~~~vr-~~a~~~l~~~~~~~~~~~~---~~~l~~  228 (337)
                      +.-+|..+++.+..++..-....+  ...+++.+.+.+.+    + ...+. -..++.++.++.. ++..+   .+.++.
T Consensus       215 DiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~  293 (503)
T PF10508_consen  215 DILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLE  293 (503)
T ss_pred             cHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence            999999999999999984422222  12355555555543    3 22222 2333555555543 23222   245666


Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhccccChHHHH--------hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITC--------SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---  297 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~--------~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---  297 (337)
                      .+.+++.+.+...+..|+.++|.++....+....        .+++..+.........++|.++.++++.+...-..   
T Consensus       294 ~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~  373 (503)
T PF10508_consen  294 RLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQD  373 (503)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCch
Confidence            6677777888999999999999998655433222        34556666666777789999999999999533221   


Q ss_pred             H--------HHH---HhhhH-HHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          298 S--------VVE---KSIRP-CLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       298 ~--------~~~---~~i~~-~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +        .|.   ..-.. .+..+++.|=+++|..+.+.+..++..
T Consensus       374 ~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  374 NDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            1        110   11111 555566666689999999998887653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.46  E-value=4.7e-11  Score=102.37  Aligned_cols=267  Identities=24%  Similarity=0.279  Sum_probs=197.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-C
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-D   80 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d   80 (337)
                      |+++.+|..++..++.+.        ..+.+|.+...+.|+++.||..++.+|+.+...        ..+|.+.++++ |
T Consensus        54 ~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------~a~~~li~~l~~d  117 (335)
T COG1413          54 DEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGDP--------EAVPPLVELLEND  117 (335)
T ss_pred             CCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------hHHHHHHHHHHcC
Confidence            567899999999977766        478999999999999999999999987766432        22333444444 8


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCCh------------hHHHHHHHhHHHhHhhhchhhHHhhH
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP------------DVRLNIISKLDQVNQVIGIDLLSQSL  148 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~------------~vr~~a~~~l~~l~~~~~~~~~~~~l  148 (337)
                      +++.||..+..+++.+..        ..-+..+.+.+.|...            .+|..++..++.+..        +..
T Consensus       118 ~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~--------~~~  181 (335)
T COG1413         118 ENEGVRAAAARALGKLGD--------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD--------PEA  181 (335)
T ss_pred             CcHhHHHHHHHHHHhcCc--------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC--------hhh
Confidence            999999999999999986        2225667777777662            466666666666643        788


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679          149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  228 (337)
Q Consensus       149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  228 (337)
                      .+.+...+.+....+|..++..++.+....      ..+.+.+...+.|+++.||..++..++.+..    +    ...+
T Consensus       182 ~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----~----~~~~  247 (335)
T COG1413         182 IPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD----E----EAVD  247 (335)
T ss_pred             hHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----c----hhHH
Confidence            999999999999999999999988876543      3577888899999999999999999986532    2    3556


Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL  308 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l  308 (337)
                      .+...+.+.++.++.......+.        .....-.+.+...+.|....+|..+...++.+....        ....+
T Consensus       248 ~l~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~a~  311 (335)
T COG1413         248 ALAKALEDEDVILALLAAAALGA--------LDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEK--------AVAAL  311 (335)
T ss_pred             HHHHHHhccchHHHHHHHHHhcc--------cCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--------hHHHH
Confidence            66777788888887776555541        112344556667778888999999999998886533        33334


Q ss_pred             HhhhCCCCccHHHHHHHHHHHH
Q 019679          309 VELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       309 ~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      .....+.+..+|..+..+...+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         312 LLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             HHHhcCCchhhHHHHHHHHHhh
Confidence            4566677777887777666543

>TIGR02270 conserved hypothetical protein

Probab=99.44  E-value=8.6e-11  Score=101.19  Aligned_cols=240  Identities=14%  Similarity=0.036  Sum_probs=170.6

Q ss_pred             hHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679           31 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  109 (337)
Q Consensus        31 l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  109 (337)
                      .++.+...+ .|++++++..++..+.....        ...+..+.+.+.|.++.||..++++|+.+..        ...
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence            466677777 57778888877666653311        1125666778889999999999999998774        456


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  189 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  189 (337)
                      .+.+..++.+.++.||..++.+++....         .-.+.+...++|+++.||..++..++.+...        ...|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPRR--------LSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--------cchH
Confidence            6888888899999999998877776322         1235566777899999999999999887532        2445


Q ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679          190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  269 (337)
Q Consensus       190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  269 (337)
                      .+...+.|.++.||.+|+.+++.+.    ..    .-++.+..+..++.+.++..+...+...    +.    +..++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            5667799999999999999997653    22    2334555545555555554444444332    22    2677888


Q ss_pred             HhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       270 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      ..++.|+.  +|..++.+++.+..        ....+.|...++|..  ++..|.+++..+.
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            88888865  99999999998865        456666667776644  8999999988764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=8.7e-12  Score=101.27  Aligned_cols=328  Identities=16%  Similarity=0.149  Sum_probs=229.0

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCccc---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcC
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSS   79 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~   79 (337)
                      +.+...++.++|.++-..+.....-   -+-|.+.+.+.| ..+||..++.++..++..-..+.  -..--+..+.++.+
T Consensus        99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLak  177 (550)
T KOG4224|consen   99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAK  177 (550)
T ss_pred             hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcc
Confidence            3455566677777666555443222   344567777755 66788888888888877633321  11223444555889


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      .++.+||..+..++.++.......  .....-+|.+.++++..+++||..+..+++.++-.-.....    .+.++|.+.
T Consensus       178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv  257 (550)
T KOG4224|consen  178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALV  257 (550)
T ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHH
Confidence            999999999999999988644322  12245579999999999999999999999988755332221    256899999


Q ss_pred             HHhcCCchHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--HhhHHHH
Q 019679          154 ELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQ  229 (337)
Q Consensus       154 ~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~  229 (337)
                      ++..|.+.+++..+...+..++.--  ..+.....-+|.+++++.++.-..--+.+-++..++..-+++..  -..++..
T Consensus       258 ~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~p  337 (550)
T KOG4224|consen  258 DLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRP  337 (550)
T ss_pred             HHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhH
Confidence            9999999999999998888887532  22223334578889999888776666667777666554333321  2345566


Q ss_pred             HHHhhcCc-chHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh--hcHHHHHHh
Q 019679          230 VLEMINNP-HYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI--VDQSVVEKS  303 (337)
Q Consensus       230 l~~~~~~~-~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~  303 (337)
                      ++.++.-. +...+..|...+-.++....   ...+...-+|.+..++.|..-+||.....++.+++-.  ........-
T Consensus       338 LVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g  417 (550)
T KOG4224|consen  338 LVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG  417 (550)
T ss_pred             HHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence            66666543 45588888888888865332   2334456788999999999899999888888887632  222234456


Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ++|.|..+..|.+.+||..++.||..+.+-
T Consensus       418 i~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  418 IIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             CcceeecccCccchhhcccHHHHHHhhhhh
Confidence            889999999999999999999999988654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.42  E-value=6.3e-12  Score=110.49  Aligned_cols=254  Identities=17%  Similarity=0.207  Sum_probs=209.8

Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  159 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~  159 (337)
                      =.+..-|......|....+.++++.....++|++...+.-.+  --...+.-+-.+++....+.+...++|.+.++....
T Consensus       265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~  342 (690)
T KOG1243|consen  265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP  342 (690)
T ss_pred             cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence            345556667777777777777778888888898888765322  111222333444455555557788999999999999


Q ss_pred             chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY  239 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  239 (337)
                      +..+|...++.+..++..+.++...+++.|.+...+.|+++.+|+.+++++..++..++.......++..+...-.|.+.
T Consensus       343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~  422 (690)
T KOG1243|consen  343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG  422 (690)
T ss_pred             chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence            99999999999999999999999999999999999999999999999999999999998876667788888888888899


Q ss_pred             HHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccH
Q 019679          240 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDV  319 (337)
Q Consensus       240 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~v  319 (337)
                      ..|....-+++.+++..........+.-.+...+.|+...-|.++...+....+.+..+....+++|-+..+.-|++..|
T Consensus       423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v  502 (690)
T KOG1243|consen  423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV  502 (690)
T ss_pred             cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence            99999999999999887665433344455566799999999999999999999999999899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 019679          320 RFFATQALQSKDQVMM  335 (337)
Q Consensus       320 r~~a~~al~~l~~~~~  335 (337)
                      |..|-+++..+.....
T Consensus       503 r~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  503 RDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hhHHHHHHHHHHhhhh
Confidence            9999999988776543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.41  E-value=8.1e-11  Score=101.06  Aligned_cols=292  Identities=14%  Similarity=0.091  Sum_probs=209.0

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      ..++.|++-.++.|.-+.|...++..+..++...-..+..+..+..++.+++.+....|-+|+..+..++...+...  .
T Consensus       262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~  339 (898)
T COG5240         262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--S  339 (898)
T ss_pred             HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--e
Confidence            34688999999999888899999998888877653444556677888888999999999999999999987665322  1


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  187 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  187 (337)
                      .--+-+..++.|.+..+-..|+.+|-.-    |.+.-...++..+..+..|-+...+..++.++..++..++.+.  .-+
T Consensus       340 vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~  413 (898)
T COG5240         340 VCNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSY  413 (898)
T ss_pred             ecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHH
Confidence            1224566778888877777666655433    3333346677777788888777788888888888888876543  224


Q ss_pred             HHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679          188 GALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL  266 (337)
Q Consensus       188 ~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  266 (337)
                      +..+...|. ....+-+..++.++..+.+.. ++ ..+..+..+++++.|-.++  +-+++.++.+++-..........+
T Consensus       414 l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~-skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yv  489 (898)
T COG5240         414 LDFLGSSLLQEGGLEFKKYMVDAISDAMEND-PD-SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYV  489 (898)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhhC-ch-HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHH
Confidence            555554444 455688899999999988865 33 3567888899999986643  234555666654333222222333


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      -++.+.+-=++.-||.+|+++|..++-........+.+..+|.++++|.|.+||..|.-++..+-
T Consensus       490 rhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         490 RHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            34444444456789999999999998777766667889999999999999999999988887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.41  E-value=1.4e-11  Score=99.30  Aligned_cols=304  Identities=16%  Similarity=0.086  Sum_probs=214.6

Q ss_pred             chHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---h
Q 019679           30 DVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---K  102 (337)
Q Consensus        30 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~  102 (337)
                      -.+|-+.+++ +.+..-..-.|+.+|..+++......   +....+|.+.+++.+++..||..+.++||+++.-..   +
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD  193 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD  193 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence            4789999999 44556667788899999988765542   223468999999999999999999999999985322   1


Q ss_pred             hhHHhhhHHHHHHhhcCCCh--hHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          103 DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      ....-..+..++.++..+..  .+-+.+--.|..++..-.+.   ......+|.+.+++-..++.+-.-++-+++.++..
T Consensus       194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg  273 (526)
T COG5064         194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG  273 (526)
T ss_pred             HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence            11122345666677666555  44556677777776643321   23467899999999888888887777888777654


Q ss_pred             hChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679          178 LGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISL  251 (337)
Q Consensus       178 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~  251 (337)
                      ....   ....-+.+.++++|..++..|..-+++++|.+...-+.+.   +.-..++.+..+++++...+|..+++.++.
T Consensus       274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN  353 (526)
T COG5064         274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN  353 (526)
T ss_pred             cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence            3221   1112244668899999999999999999999876443221   123467888888999989999999999999


Q ss_pred             hccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--H---H-HHHhhhHHHHhhhCCCCccHHHH
Q 019679          252 LAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--S---V-VEKSIRPCLVELSEDPDVDVRFF  322 (337)
Q Consensus       252 l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~---~-~~~~i~~~l~~l~~d~~~~vr~~  322 (337)
                      +......   ......++|.+..++..-...+|+.|+.++.......-+  +   + ..+-++..|..+++-.+..+-..
T Consensus       354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev  433 (526)
T COG5064         354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV  433 (526)
T ss_pred             cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence            8543322   223446899999999999999999999999988654321  1   1 12346666777777666666667


Q ss_pred             HHHHHHHHHHh
Q 019679          323 ATQALQSKDQV  333 (337)
Q Consensus       323 a~~al~~l~~~  333 (337)
                      +..++..+...
T Consensus       434 ~LD~~eniLk~  444 (526)
T COG5064         434 ALDAIENILKV  444 (526)
T ss_pred             hHHHHHHHHhh
Confidence            77777766543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.40  E-value=7.2e-11  Score=95.41  Aligned_cols=143  Identities=18%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhH-H
Q 019679          190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-L  266 (337)
Q Consensus       190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l-~  266 (337)
                      .+...+.|....|-..|+.++..++..+|...  +.+.++|.+...+.+.+..+|..+..++..+.+..+   +...+ .
T Consensus        57 ~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~  133 (228)
T PF12348_consen   57 AIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILL  133 (228)
T ss_dssp             HHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHH
Confidence            33344444444444444555555444443321  233444445555554444455555555555444433   01122 4


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhc---H----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +.+.....++++.+|..++..+..+....+   .    ......+.+.+..++.|++++||..|.+++..+.++++
T Consensus       134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            444444455555555555555544444444   0    01123444444445555555555555555555544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.40  E-value=3.3e-11  Score=97.16  Aligned_cols=302  Identities=13%  Similarity=0.099  Sum_probs=211.9

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHh--hCH-HH-HHHhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhh-
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI--LNP-EL-AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA-  104 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~--~~~-~~-~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~-  104 (337)
                      =+|.+.+.+.+.+-+-...+..-+.++.+.  .+| +. +..-++|.+.+++ +......+-.|++++.+++.--..+- 
T Consensus        72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk  151 (526)
T COG5064          72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK  151 (526)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence            357777777777777777777666655442  111 12 2334778888877 55556777899999999986443221 


Q ss_pred             --HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--hh-HHhhHHHHHHHHhcCCch--HHHHHHHHHhhHhHhh
Q 019679          105 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DL-LSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQ  177 (337)
Q Consensus       105 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~llp~l~~~~~d~~~--~vr~~~~~~l~~l~~~  177 (337)
                        ....-+|.+.+++.+.+.+||..++-+|+.++.....  +. +.-..+..+..++.++..  ..-..+--.++.++..
T Consensus       152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence              2246789999999999999999999999999765321  11 111233334444433322  3334445667777765


Q ss_pred             hChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679          178 LGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISL  251 (337)
Q Consensus       178 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~  251 (337)
                      ..+.   ....+.+|++.+++...+++|-..|+-+++.++..-...   .+-..+.+.+++++.+++..+...+++.+|.
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGN  311 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGN  311 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcC
Confidence            5332   245689999999999999999999999999987643111   1123456789999999998888889999999


Q ss_pred             hccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679          252 LAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQ  325 (337)
Q Consensus       252 l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~  325 (337)
                      +...-...   ...-..++.+..+|+.+...+|+.++.+++.+...-..+   .+...+.|.|..++...+..++.-||+
T Consensus       312 IVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACW  391 (526)
T COG5064         312 IVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW  391 (526)
T ss_pred             eeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            87654322   123357888889999999999999999999995422221   345678899999988888999999999


Q ss_pred             HHHHHHH
Q 019679          326 ALQSKDQ  332 (337)
Q Consensus       326 al~~l~~  332 (337)
                      |+....+
T Consensus       392 AisNats  398 (526)
T COG5064         392 AISNATS  398 (526)
T ss_pred             HHHhhhc
Confidence            9987654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=4.6e-11  Score=97.16  Aligned_cols=329  Identities=17%  Similarity=0.168  Sum_probs=221.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--CHHHHHHhhhHhhHHhc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPELAIQHILPCVKELS   78 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~--~~~~~~~~ll~~l~~l~   78 (337)
                      +.-.||..++.++..+++.-...  ....--+..+.++-+.++..+|..+..+|..+-..-  ....+..--+|.+..++
T Consensus       138 d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll  217 (550)
T KOG4224|consen  138 DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLL  217 (550)
T ss_pred             CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence            34456667777777777652221  122334555667888899999999998888764321  11122233689999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccCh-hh---HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGK-DA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAI  152 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l  152 (337)
                      ...++.||..++.++++++-.--. ..   ....++|.+..++.|.++.|+..|-.++..++....  .+.....-+|.+
T Consensus       218 ~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~l  297 (550)
T KOG4224|consen  218 KSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLL  297 (550)
T ss_pred             ccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHH
Confidence            999999999999999998842211 11   124599999999999999999999999999987543  233344578999


Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChH---HHHhhH
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPD---WAMQHI  226 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l  226 (337)
                      .++++++....-.+.+.++..++-.-+.+.  ...-++..++.+|.- ++.+++..|...+..++......   .....-
T Consensus       298 v~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgA  377 (550)
T KOG4224|consen  298 VELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGA  377 (550)
T ss_pred             HHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCc
Confidence            999998887777777777766665544332  122355667777765 44568999999999887654321   223467


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHh--ccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH-H---
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLL--APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV-V---  300 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-~---  300 (337)
                      +|.+.+++.|....+|...-.++..+  ............++|.+..+..+.+.+||-+++.+|..+.+....-. +   
T Consensus       378 i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEa  457 (550)
T KOG4224|consen  378 IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEA  457 (550)
T ss_pred             hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence            89999999998766665554455555  44444444556799999999999999999999999999976543210 0   


Q ss_pred             ----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          301 ----EKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       301 ----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                          .+-+...|..+.......+|-.+.+.+..+.
T Consensus       458 wd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLl  492 (550)
T KOG4224|consen  458 WDHPVQGIQGRLARFLASHELTFRHIARWTIQQLL  492 (550)
T ss_pred             hcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence                0223333444444444445555555554443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.39  E-value=1.2e-11  Score=108.75  Aligned_cols=258  Identities=13%  Similarity=0.194  Sum_probs=214.8

Q ss_pred             HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh
Q 019679           37 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL  116 (337)
Q Consensus        37 ~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  116 (337)
                      .-+.-.+.+-|..-...|....+.++.+.....++|.+...+.-.+  --...+..+-.++..+..+.+...++|.+.++
T Consensus       261 eel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kL  338 (690)
T KOG1243|consen  261 EELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKL  338 (690)
T ss_pred             HhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHH
Confidence            3444566777888888888888888888888889998876654433  11223333334455444455667899999999


Q ss_pred             hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc
Q 019679          117 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK  196 (337)
Q Consensus       117 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  196 (337)
                      ++..+..+|...++.+..+...+.++.+.+.++|.+...+.|.+..+|...+.++..++..+++.....+++..+..+-.
T Consensus       339 F~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~  418 (690)
T KOG1243|consen  339 FKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP  418 (690)
T ss_pred             hcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888889999998888


Q ss_pred             ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCC
Q 019679          197 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR  276 (337)
Q Consensus       197 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  276 (337)
                      |+...+|.....+++.++..+.+......+...+...+.|+...-|.+++..+....+++........++|.+..+..|+
T Consensus       419 d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~  498 (690)
T KOG1243|consen  419 DEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDP  498 (690)
T ss_pred             cccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCc
Confidence            99999999999999999887755543334555666678899999999999999999999988888899999999999999


Q ss_pred             ChhHHHHHHHHHHHHhhhhc
Q 019679          277 VPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       277 ~~~vr~~a~~~l~~i~~~~~  296 (337)
                      +..||..+.+++...-..+.
T Consensus       499 e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  499 EKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             ccchhhHHHHHHHHHHhhhh
Confidence            99999999999888866554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.38  E-value=8.1e-11  Score=95.09  Aligned_cols=189  Identities=19%  Similarity=0.200  Sum_probs=129.6

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-------hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      .+...+.+--.+.+++.|..++..+..++..-......       ..+++.+...+.|....+-..++.++..++..++.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            33444444445677888888888887777654111111       22335555666777778888899999999998876


Q ss_pred             hh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-
Q 019679          181 GF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-  257 (337)
Q Consensus       181 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-  257 (337)
                      ..  +.+.++|.++..+.|++..+|+.|..+|..+.+..+..  ...+.+.+....+++++.+|..++.++..+....+ 
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence            53  56789999999999999999999999999999877511  12237888888999999999999999999987777 


Q ss_pred             -hH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679          258 -SE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       258 -~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                       ..     ...+.+.+.+..++.|.+++||.+|-+++..+.+.+|..
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence             11     123678999999999999999999999999999998875

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=5.8e-11  Score=103.34  Aligned_cols=252  Identities=15%  Similarity=0.170  Sum_probs=172.9

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC-------
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-------  101 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-------  101 (337)
                      +.+..-+..+..|.+..||..|++++..+.+.+.   ..+.+.....+++.|.+..||.+|++.+.-.++..+       
T Consensus       197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            3466668888999999999999999999888432   223455667778999999999999999887776652       


Q ss_pred             -hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHh---hHhHhh
Q 019679          102 -KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI---PLLASQ  177 (337)
Q Consensus       102 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l---~~l~~~  177 (337)
                       +....+....-+++.++|-+..||-.|++.+|.+.+.- .+.+.+.+=..+..  .+..|+..+..-..+   +.++..
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee~i~QTLdKKlms--~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EEIIQQTLDKKLMS--RLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HHHHHHHHHHHHhh--hhhhhhhcccchHHHHhcCCcccC
Confidence             11234667778888999999999999999999887652 22221211111111  111111111111111   111100


Q ss_pred             ------hChhhH--------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHH
Q 019679          178 ------LGVGFF--------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRM  243 (337)
Q Consensus       178 ------~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~  243 (337)
                            .+.+..        ..-....+...++|+..+||.+|+.++..++..- +. +...-+..+.++++|.-..||.
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~-FA~~aldfLvDMfNDE~~~VRL  428 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PG-FAVRALDFLVDMFNDEIEVVRL  428 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhccHHHHHHH
Confidence                  000000        0112245677899999999999999999998753 23 3456788999999999999999


Q ss_pred             HHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          244 TILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       244 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      .++.++..++..+   ...+..++.++..+.|.+..||.+.-..|+..
T Consensus       429 ~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  429 KAIFALTMISVHL---AIREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999999988653   24567889999999999999999887776654

>TIGR02270 conserved hypothetical protein

Probab=99.33  E-value=6.8e-10  Score=95.70  Aligned_cols=210  Identities=13%  Similarity=0.082  Sum_probs=160.5

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      .+..+.+.+.|.++.||..++..|+.+..        ....+.+..+++++++.||..++.+++....         .-.
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~  149 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPG  149 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChH
Confidence            38888999999999999999999996543        2455667778899999999999988887442         123


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  190 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  190 (337)
                      +.+..+++|.++.||..++.+++.+..        ....|.+.....|.++.||..++..+..+..    .    ...+.
T Consensus       150 ~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~  213 (410)
T TIGR02270       150 PALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGV  213 (410)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHH
Confidence            677788889999999999999999865        3455667788999999999999999866532    1    23345


Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679          191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  270 (337)
Q Consensus       191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  270 (337)
                      +..+..++...++..+...++..    |.+    ..++.+..+++++.  +|..++.+++.+..        ...++.+.
T Consensus       214 l~~~~~~~g~~~~~~l~~~lal~----~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~  275 (410)
T TIGR02270       214 CRRFQVLEGGPHRQRLLVLLAVA----GGP----DAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCL  275 (410)
T ss_pred             HHHHHhccCccHHHHHHHHHHhC----Cch----hHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHH
Confidence            55545666666655555555433    322    57778888888866  99999999998763        46778888


Q ss_pred             hhccCCChhHHHHHHHHHHHHhh
Q 019679          271 NASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       271 ~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                      ..+.|+.  +++.|..++..|..
T Consensus       276 ~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       276 EAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHhcCcH--HHHHHHHHHHHhhC
Confidence            8888874  99999999999963

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.4e-08  Score=90.54  Aligned_cols=308  Identities=17%  Similarity=0.125  Sum_probs=165.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +..||+.+--.|-+.|..-+.-...  =+..+.+.+.|+|+.+|..|+..+..+-    -..+..-++-.++++..|+++
T Consensus        84 n~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~  157 (968)
T KOG1060|consen   84 NIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSP  157 (968)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcH
Confidence            4445555544444444332222211  1567778888888888888888777552    112233455567889999999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH---HHHHHhcCCc
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP---AIVELAEDRH  160 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp---~l~~~~~d~~  160 (337)
                      .||+.|+.++.++-..-+++.  +.+..++..++.|.++-|-.+|+.++..++..-    + +.+-+   .++.++.|-+
T Consensus       158 yVRk~AA~AIpKLYsLd~e~k--~qL~e~I~~LLaD~splVvgsAv~AF~evCPer----l-dLIHknyrklC~ll~dvd  230 (968)
T KOG1060|consen  158 YVRKTAAHAIPKLYSLDPEQK--DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPER----L-DLIHKNYRKLCRLLPDVD  230 (968)
T ss_pred             HHHHHHHHhhHHHhcCChhhH--HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhH----H-HHhhHHHHHHHhhccchh
Confidence            999999999999887555433  389999999999999999999999888776430    0 11212   1222233322


Q ss_pred             hHHHHHHHHHhhHhHhhh--C--------------------------h---hhHHHHHHHHHHHHccccchHHHHHHHHH
Q 019679          161 WRVRLAIIEYIPLLASQL--G--------------------------V---GFFDDKLGALCMQWLKDKVYSIRDAAANN  209 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~--~--------------------------~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  209 (337)
                      ..-+...++.+...+...  .                          +   +.-...++.....++...++.|--++++.
T Consensus       231 eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql  310 (968)
T KOG1060|consen  231 EWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQL  310 (968)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhH
Confidence            222333333333333221  0                          0   00011233333344455555555555555


Q ss_pred             HHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--------------------------------
Q 019679          210 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--------------------------------  257 (337)
Q Consensus       210 l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--------------------------------  257 (337)
                      +..++....    ...+...++.++.+ +..++...+..+..++..-.                                
T Consensus       311 ~y~lAP~~~----~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La  385 (968)
T KOG1060|consen  311 FYHLAPKNQ----VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLA  385 (968)
T ss_pred             HHhhCCHHH----HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence            555443221    12223333333322 12233333333333321100                                


Q ss_pred             hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      .+.-...+++-+..+.++.+..+-.++++++|..++.++.  ..+.++..|..++...+.-|-..++-.|..+.
T Consensus       386 ~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll  457 (968)
T KOG1060|consen  386 NESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL  457 (968)
T ss_pred             hhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            0011234555566666666666777777777777776663  34667777777766666655555555554444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=1.4e-08  Score=90.56  Aligned_cols=309  Identities=13%  Similarity=0.070  Sum_probs=204.9

Q ss_pred             HHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHH
Q 019679           13 NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATV   92 (337)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~   92 (337)
                      +++..+............++|.+.+....+|.+||+...-.|.+.++.-+.....  -+..+.+.+.|+|+-+|..|+..
T Consensus        54 eAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~DpN~LiRasALRv  131 (968)
T KOG1060|consen   54 EAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALKDPNQLIRASALRV  131 (968)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhcCCcHHHHHHHHHH
Confidence            3333333333333335788999999999999999999999999998875554221  24567788999999999999999


Q ss_pred             HHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhh
Q 019679           93 IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  172 (337)
Q Consensus        93 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~  172 (337)
                      +..+--.    .....++-.+.++..|..+.||+.|+.++..+-+. +++.. ..+...+..++.|.++.|-.+++.++.
T Consensus       132 lSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k-~qL~e~I~~LLaD~splVvgsAv~AF~  205 (968)
T KOG1060|consen  132 LSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQK-DQLEEVIKKLLADRSPLVVGSAVMAFE  205 (968)
T ss_pred             HHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhH-HHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence            9877631    11233444566677899999999999999998764 44443 478888999999999999888888877


Q ss_pred             HhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh----------------------------Ch---HH
Q 019679          173 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF----------------------------GP---DW  221 (337)
Q Consensus       173 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----------------------------~~---~~  221 (337)
                      .++..-=  .....-..-+-+++.|-+.+-+...+..|.+.+..-                            ++   +.
T Consensus       206 evCPerl--dLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~  283 (968)
T KOG1060|consen  206 EVCPERL--DLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDP  283 (968)
T ss_pred             HhchhHH--HHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCc
Confidence            7653210  011111122334555555554555566666554421                            01   11


Q ss_pred             HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh------
Q 019679          222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV------  295 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~------  295 (337)
                      ....++.....++.+.+..|-++++.++-.++...    -...+...++.+|.. +.++|....+.+..++..-      
T Consensus       284 D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P  358 (968)
T KOG1060|consen  284 DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEP  358 (968)
T ss_pred             cHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhh
Confidence            13345556666777888888888888777776532    233455566665544 3677777777777776221      


Q ss_pred             --------------------------cHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          296 --------------------------DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       296 --------------------------~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                                                -++.....|++-|..+.++.+.++-..+++||+.+++..++
T Consensus       359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s  425 (968)
T KOG1060|consen  359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS  425 (968)
T ss_pred             hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc
Confidence                                      01122356777777888888888999999999999987653

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=5.6e-09  Score=93.15  Aligned_cols=301  Identities=12%  Similarity=0.077  Sum_probs=200.6

Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH
Q 019679           26 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT  105 (337)
Q Consensus        26 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  105 (337)
                      .....++|.+...++-.|-+.++..-.-+...+..-+....  ..+..+.+-++|++|.+|..|+..++.+.-    ...
T Consensus        45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~--~avnt~~kD~~d~np~iR~lAlrtm~~l~v----~~i  118 (734)
T KOG1061|consen   45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI--LAVNTFLKDCEDPNPLIRALALRTMGCLRV----DKI  118 (734)
T ss_pred             cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--hhhhhhhccCCCCCHHHHHHHhhceeeEee----hHH
Confidence            33467899999999888888888888777777765444432  355667778889999999999998887763    334


Q ss_pred             HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhh
Q 019679          106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGF  182 (337)
Q Consensus       106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~  182 (337)
                      .+.+...+.+.++|.++.||..+.-+...+...-..-.....+++.+..++.|.++.|-..++.++..+.+.-.   .-.
T Consensus       119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~  198 (734)
T KOG1061|consen  119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE  198 (734)
T ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence            57788889999999999999999988888765533223345688889999999999999999999888876642   122


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E  259 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~  259 (337)
                      ....++.-+++.++..+.+-+-....++...   ...+. -.+.+...+...+.+.+..+-..+...+..+...+..  +
T Consensus       199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y---~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~  275 (734)
T KOG1061|consen  199 LNPQLINKLLEALNECTEWGQIFILDCLAEY---VPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE  275 (734)
T ss_pred             ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc---CCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH
Confidence            3445666666666665555555554444433   22221 1234555666666666666666666666665554443  2


Q ss_pred             HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--------------------------------HHHHHHhhhHH
Q 019679          260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--------------------------------QSVVEKSIRPC  307 (337)
Q Consensus       260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--------------------------------~~~~~~~i~~~  307 (337)
                      .+..++-|-+..++..+. ++...+.+.+..+..+.+                                ......++++-
T Consensus       276 ~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~E  354 (734)
T KOG1061|consen  276 LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAE  354 (734)
T ss_pred             HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHH
Confidence            233445555555554443 666666555555542211                                11223457777


Q ss_pred             HHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          308 LVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       308 l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      |.....+.|.+.-..+++|++.++....+
T Consensus       355 l~eYatevD~~fvrkaIraig~~aik~e~  383 (734)
T KOG1061|consen  355 LKEYATEVDVDFVRKAVRAIGRLAIKAEQ  383 (734)
T ss_pred             HHHhhhhhCHHHHHHHHHHhhhhhhhhhh
Confidence            77888888888888999999999876543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.16  E-value=9.3e-09  Score=88.74  Aligned_cols=277  Identities=13%  Similarity=0.133  Sum_probs=202.9

Q ss_pred             CChHHHHHHHHHHHHHHHHh-CCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            3 KSWRVRYMVANQLYELCEAV-GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      +-..|-..+++++..++..- +++. ....+..+..++..+....|-+|+..|.+++-..+...  ...-+-+..+++|.
T Consensus       276 k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~  352 (898)
T COG5240         276 KFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDE  352 (898)
T ss_pred             cchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcc
Confidence            34567888888888887654 5544 46778888899999999999999999999987655442  23445667789999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCc
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRH  160 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~  160 (337)
                      |..+-..|+..|-+-+.    +...+.++..+..++.|-++..+..++.++..++-.++.+.  ..++..+...+ +...
T Consensus       353 Nr~IstyAITtLLKTGt----~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg  426 (898)
T COG5240         353 NRTISTYAITTLLKTGT----EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGG  426 (898)
T ss_pred             cccchHHHHHHHHHcCc----hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhccc
Confidence            98888888888776654    66677888888888888888888888888888877665443  34556665544 4556


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      ...+...++.++.+.+..+..  .+..+..+-.+++|....  +.+++.|+-+++......--...+.++.+-+-=.+..
T Consensus       427 ~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~i  502 (898)
T COG5240         427 LEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNI  502 (898)
T ss_pred             chHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhH
Confidence            678999999999888876442  356777777888887542  4455566655543221111113444554444446789


Q ss_pred             HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      +|.+|+.++..++-........+.+...+..+++|.+.+||..|.-.+..+-
T Consensus       503 vRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         503 VRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            9999999999998777766667788889999999999999999998888874

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6.4e-09  Score=92.78  Aligned_cols=127  Identities=15%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHH
Q 019679            7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVR   86 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr   86 (337)
                      .++.+=-.+...+..-+...  -..++.+..-++|++|.+|..|+.+++.+    +.+.+.+++...+.++++|.++.||
T Consensus        65 lKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvR  138 (734)
T KOG1061|consen   65 LKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVR  138 (734)
T ss_pred             HHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHH
Confidence            34444444444443222211  24578888888899999999998888743    4445567778888889999999999


Q ss_pred             HHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679           87 SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  139 (337)
Q Consensus        87 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  139 (337)
                      +.++-+..++...-++......+++.+..++.|++|.|-.+|+.++..+.+.-
T Consensus       139 ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  139 KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            99999988888776666666788888888888999999999999988887653

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.09  E-value=3.2e-07  Score=83.63  Aligned_cols=164  Identities=11%  Similarity=0.137  Sum_probs=127.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +...|..+++.+-... ..|.+  .+.++|.+.+.....|.++++..-.-+..+++.-+.+..  ..++.+.+-++|+|+
T Consensus        32 n~~~kidAmK~iIa~M-~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~kDl~d~N~  106 (757)
T COG5096          32 NDYKKIDAMKKIIAQM-SLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQKDLQDPNE  106 (757)
T ss_pred             ChHHHHHHHHHHHHHH-hcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHhhccCCCH
Confidence            3444555544432221 23444  578999999999899999999999999988887664433  356778888999999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhh-HHHHHHHHhcCCchH
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS-LLPAIVELAEDRHWR  162 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-llp~l~~~~~d~~~~  162 (337)
                      .+|..|++.++.+..    ......+++.+.+++.|.++.||+.|+-++..+-+. +++-+.+. ....+..+..|+++.
T Consensus       107 ~iR~~AlR~ls~l~~----~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~  181 (757)
T COG5096         107 EIRGFALRTLSLLRV----KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPI  181 (757)
T ss_pred             HHHHHHHHHHHhcCh----HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCch
Confidence            999999999998875    445678899999999999999999999999998764 44444455 677778888999999


Q ss_pred             HHHHHHHHhhHhHhh
Q 019679          163 VRLAIIEYIPLLASQ  177 (337)
Q Consensus       163 vr~~~~~~l~~l~~~  177 (337)
                      |...++..+..+...
T Consensus       182 Vi~nAl~sl~~i~~e  196 (757)
T COG5096         182 VIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHHHhchh
Confidence            999998888777654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.1e-07  Score=85.26  Aligned_cols=276  Identities=18%  Similarity=0.204  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHH
Q 019679           11 VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA   90 (337)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~   90 (337)
                      ++-+|..++...+++.. ..+.|.+.++++..++-||+.|+.+...+....+.-  .+.+++...+++.|.+..|-.+.+
T Consensus       124 VglAL~alg~i~s~Ema-rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek~hGVL~~~l  200 (866)
T KOG1062|consen  124 VGLALCALGNICSPEMA-RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEKHHGVLIAGL  200 (866)
T ss_pred             hHHHHHHhhccCCHHHh-HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhcCCceeeeHH
Confidence            34445555555555553 456666666666666666666666666655443321  234555555566666665555555


Q ss_pred             HHHHhcCcccChhh-HHhhhHHHHHHhhcC---------------CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           91 TVIMGMAPILGKDA-TIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        91 ~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                      ..+..+++.-++.. ..+++.+-+...+++               ++|..+...++.|..+++.-.  ...+.+-..+.+
T Consensus       201 ~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~--daSd~M~DiLaq  278 (866)
T KOG1062|consen  201 HLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA--DASDLMNDILAQ  278 (866)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHH
Confidence            55555554322211 112233333333211               235555555555554444311  111111122222


Q ss_pred             Hhc--CCch-HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHH
Q 019679          155 LAE--DRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  231 (337)
Q Consensus       155 ~~~--d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  231 (337)
                      ...  |.+. .-.....+++..+.............+.++-++|...+.++|..++++|.+..+. ++ ...+.--..+.
T Consensus       279 vatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~-d~-~avqrHr~tIl  356 (866)
T KOG1062|consen  279 VATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQ-DP-TAVQRHRSTIL  356 (866)
T ss_pred             HHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcC-Cc-HHHHHHHHHHH
Confidence            211  1111 1112222333333333333333334445555555555556666666665555442 11 22344446788


Q ss_pred             HhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          232 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       232 ~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ++++|++..+|..|++..-.+...-.-......++.++-.    .++..|...+..+..+++.+.+
T Consensus       357 eCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~----~d~~~k~~~as~I~~laEkfaP  418 (866)
T KOG1062|consen  357 ECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLES----SDEDFKADIASKIAELAEKFAP  418 (866)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHhcCC
Confidence            8888888888888888887776655444444444444444    3567777777777777766654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=1.7e-06  Score=81.14  Aligned_cols=294  Identities=12%  Similarity=0.156  Sum_probs=203.8

Q ss_pred             hHHHHHHHHHHH-HHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHH----HHHhhCHHHHHHhhhHhhHHhcC
Q 019679            5 WRVRYMVANQLY-ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTK----ICRILNPELAIQHILPCVKELSS   79 (337)
Q Consensus         5 ~~vR~~~~~~l~-~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~----~~~~~~~~~~~~~ll~~l~~l~~   79 (337)
                      ..+|......+. ......+.+. -..+...+.+...+.+..++..-...+..    ++...+.+.+.. +..+....-+
T Consensus       587 l~~~~~~L~~i~~~~~~~t~~dv-~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~  664 (1176)
T KOG1248|consen  587 LASRSTVLEIIRVDYFTVTPTDV-VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFEN  664 (1176)
T ss_pred             HHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhc
Confidence            455666666665 3333333333 34566666666667665555444433333    333333333332 2234444556


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh--HHhhHHHHHH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIV  153 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~  153 (337)
                      ..+..+|+-+.+.|..+......+.    ..+++...+..-+++.....|...+.++..+.+..+.+.  +....+|-+.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI  744 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI  744 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            6688999999999999887622222    234556666666777788999999999999999887432  3344555444


Q ss_pred             HHhcCCchHHHHHHHHHhhHhH--hhh---Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHH
Q 019679          154 ELAEDRHWRVRLAIIEYIPLLA--SQL---GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWA  222 (337)
Q Consensus       154 ~~~~d~~~~vr~~~~~~l~~l~--~~~---~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~  222 (337)
                      -..++.+...|+.+..+|..+.  +..   |.+   ...+.+++.+...+-.++..++...+-++..+...++.   +..
T Consensus       745 L~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~  824 (1176)
T KOG1248|consen  745 LSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDET  824 (1176)
T ss_pred             HhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            4448888889999888888777  332   433   35567888887777777777776667777777665532   345


Q ss_pred             HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH---HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      .+.++..+.-++...+..++.+|+.++..+...+....   +.+.++|.++.+.+|....+|..+-..|..++..+|.+.
T Consensus       825 l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e  904 (1176)
T KOG1248|consen  825 LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE  904 (1176)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence            67788889999999999999999999999998887653   456689999999999999999999999999999999875


Q ss_pred             H
Q 019679          300 V  300 (337)
Q Consensus       300 ~  300 (337)
                      +
T Consensus       905 L  905 (1176)
T KOG1248|consen  905 L  905 (1176)
T ss_pred             H
Confidence            4

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=99.03  E-value=3.7e-08  Score=90.98  Aligned_cols=189  Identities=20%  Similarity=0.244  Sum_probs=156.3

Q ss_pred             HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      +.+.+-+.+..-+.+++|.-|..+++.+....+.-+   ...+...+...+-..+.|.+..|-..++..+..++..++..
T Consensus       250 i~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~  329 (815)
T KOG1820|consen  250 ILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL  329 (815)
T ss_pred             hhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh
Confidence            335566677777889999999999999988877655   12244455566666789999999999999999999988754


Q ss_pred             --HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-
Q 019679          221 --WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  297 (337)
Q Consensus       221 --~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-  297 (337)
                        .+...++|.+.+.+.+....+|.++..++..++...    -...+.+.+..++++.++.+|..+...+.......++ 
T Consensus       330 ~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  330 FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence              345678899999999999999999999999887633    3457889999999999999999999999888877772 


Q ss_pred             ---HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          298 ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       298 ---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                         ....+.+.|.+....+|.+.+||..|.++++.+..++|.
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge  447 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE  447 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence               244678999999999999999999999999999999985

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=4.9e-08  Score=86.83  Aligned_cols=236  Identities=17%  Similarity=0.282  Sum_probs=178.5

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CC
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  159 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~  159 (337)
                      .++.-+....+.|.++...++.......++|.+.+.+.+.  ...-...-.+-.+.+......+...++|.+....+ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            3444567788889999988888888889999999888542  11112222233344444444556778888888776 55


Q ss_pred             chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-Ccc
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPH  238 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~  238 (337)
                      ..+++...++.+..+.+...++.+.+.++|++...++|.+..+++.+++.+..+.+.++...+.+.++|.+..+.. ..+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            5678889999999999999999999999999999999999999999999999999999877788899999988754 456


Q ss_pred             hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--HHHHHHhhhHHHHhhhCCCC
Q 019679          239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPD  316 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~~  316 (337)
                      ..+|..++.|++.+++.+......+.+.|++.+. +-.++.+.....+....++-...  .+...++++|.+..+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            8999999999999998777766666676666655 33446777777777766654332  35667889999988766555


Q ss_pred             ccH
Q 019679          317 VDV  319 (337)
Q Consensus       317 ~~v  319 (337)
                      -.+
T Consensus       522 L~~  524 (700)
T KOG2137|consen  522 LNG  524 (700)
T ss_pred             ccH
Confidence            433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=99.02  E-value=3.5e-09  Score=71.73  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             HHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH--HhhhHHHHHHhhcCCC
Q 019679           46 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEF  121 (337)
Q Consensus        46 vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~  121 (337)
                      .|+.++.+|..++..++..  .+.+.++|.+...++|++++||..+++++.++++..+.+..  ..++.+.+.+++.|.+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4788888888888877765  56677888888999999999999999999999987776553  3678888899999999


Q ss_pred             hhHHHHHHHhHHHhH
Q 019679          122 PDVRLNIISKLDQVN  136 (337)
Q Consensus       122 ~~vr~~a~~~l~~l~  136 (337)
                      +.||.+| ..+.++.
T Consensus        82 ~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   82 ENVRSAA-ELLDRLL   95 (97)
T ss_pred             hhHHHHH-HHHHHHh
Confidence            9999877 4455443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=7.7e-06  Score=76.90  Aligned_cols=331  Identities=14%  Similarity=0.134  Sum_probs=220.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCC-----------CcccchHHHHHHhcCCCh------HHHHHHHHHhHH-HHHHhhCHHH
Q 019679            4 SWRVRYMVANQLYELCEAVGPE-----------PTRSDVVPAYVRLLRDNE------AEVRIAAAGKVT-KICRILNPEL   65 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~-----------~~~~~l~~~l~~~~~d~~------~~vR~~a~~~l~-~~~~~~~~~~   65 (337)
                      ++..|-.+|.+|..+.....|.           ..-+..+|.+........      ...|...+.... ..... .+.+
T Consensus       530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~-t~~d  608 (1176)
T KOG1248|consen  530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTV-TPTD  608 (1176)
T ss_pred             chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhc-ccHH
Confidence            4567888888888888664211           112246777777665432      334444444443 22222 2333


Q ss_pred             HHHhhhHhhHHhcCCCcHHHHH----HHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch
Q 019679           66 AIQHILPCVKELSSDSSQHVRS----ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  141 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~~~~vr~----~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  141 (337)
                      +...+..-+..+..+.+..++.    ..+..+..++........ ..+..+.-..-+..+..+++-+...|..+......
T Consensus       609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~v-s~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~  687 (1176)
T KOG1248|consen  609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQV-SKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG  687 (1176)
T ss_pred             HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhH-HHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence            3344555566666666544443    344444445554443322 22333334444455789999999999999887332


Q ss_pred             h----hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHH-
Q 019679          142 D----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLA-  214 (337)
Q Consensus       142 ~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~-  214 (337)
                      +    .....+...+.+-.++.+...|...+.++..+.+..+.+.  +.+..+|-++=.+++.+..-|+.+..+|-.++ 
T Consensus       688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~  767 (1176)
T KOG1248|consen  688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA  767 (1176)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence            2    2335677777777788888899999999999999888443  34455555544558888888888888877776 


Q ss_pred             -HH---hChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc---cChHHHHhhHHHHHHhhccCCChhHHHHH
Q 019679          215 -EE---FGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       215 -~~---~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                       ..   .|.+.   ..+.+++.+..-+.....+++...+-++..+...   .....+.+.++..+..++....++++.+|
T Consensus       768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA  847 (1176)
T KOG1248|consen  768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA  847 (1176)
T ss_pred             HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             22   23222   3455666666665555566665556666666432   23445677899999999999999999999


Q ss_pred             HHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          285 AKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       285 ~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +..+..+...++..   .+.+.++|.+..+..|....+|..+-..|..+.+.||-
T Consensus       848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~  902 (1176)
T KOG1248|consen  848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence            99999999888765   44567899999999999999999999999999999874

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=2.5e-06  Score=72.89  Aligned_cols=258  Identities=16%  Similarity=0.108  Sum_probs=162.7

Q ss_pred             HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhH-HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH
Q 019679           68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLL-PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  144 (337)
Q Consensus        68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  144 (337)
                      ..++..+.+-..|++..+|..++.++++.+...+.....  ..++ -++..+..+.+.+|...+++++..+.+......+
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            445555666778999999999999999999876654422  3333 4444555566789999999999999888776666


Q ss_pred             HhhHHHH---HHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHH---HccccchHHHHHHHHHHHHHHH
Q 019679          145 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQ---WLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       145 ~~~llp~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      ...+++.   +.++..+.+..+|.++...++.++...|.   +.+.+++..-+..   -+.|+++.|-.++=..+.....
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP  416 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence            5555554   45677899999999999999999988754   3344444433222   3578888876654444333223


Q ss_pred             HhChHHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          216 EFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       216 ~~~~~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                      +++    .+.+-..+-+.+ |.. .+.+.-.-.+...+.+.+..  ..-.+......+++...+.||.++...-..+...
T Consensus       417 ~l~----rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~  489 (533)
T KOG2032|consen  417 NLV----RKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS  489 (533)
T ss_pred             hhH----HHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence            222    222222222222 211 12222222222222222211  1112333344556666678898888777777666


Q ss_pred             hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      +.++    .....+...+..+-.|+-++++..+.+|++.+..
T Consensus       490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            6554    2235677788889999999999999999987653

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=8.3e-08  Score=85.45  Aligned_cols=228  Identities=16%  Similarity=0.181  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHH
Q 019679            7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHV   85 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~v   85 (337)
                      -+-.+.+.|..+...++....+..++|.+...+.+  ...--...-.+..|++..+..++...++|.+....+ -.+-.+
T Consensus       289 qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~  366 (700)
T KOG2137|consen  289 QKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQA  366 (700)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccc
Confidence            34455666777777777777667777777777643  222222333444555555666666677777766655 333466


Q ss_pred             HHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHH
Q 019679           86 RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVR  164 (337)
Q Consensus        86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr  164 (337)
                      +...++.+..+.+....+...+.++|.+...++|.+..++..+++.++.+.+.+....+.+.++|.+..+. ...+..++
T Consensus       367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vk  446 (700)
T KOG2137|consen  367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVK  446 (700)
T ss_pred             hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHH
Confidence            67777777777777777777777888888888887788888888888888877776666777777777654 45666777


Q ss_pred             HHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HhChHHHHhhHHHHHHHhhcCc
Q 019679          165 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE--EFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       165 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      ..++.+++.+++.++.....+++.|++.+ .+-.++.+....++....+.-  ..|.+...++++|.++.+...+
T Consensus       447 vn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  447 VNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence            77888888777777766666666666544 333334444433333333221  1122444556667666655443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.92  E-value=1.4e-06  Score=79.46  Aligned_cols=129  Identities=17%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +..+++.+--.+...++.-|...  -..++.+.+-++|+|+.+|..|+++++.+    +...+...+++.++++++|+++
T Consensus        68 d~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~a  141 (757)
T COG5096          68 DVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHA  141 (757)
T ss_pred             CHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcH
Confidence            45566666666666655444222  13688899999999999999999998854    5567778899999999999999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  138 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  138 (337)
                      .||+.|+-++.++-+.-...........++..++.|++|.|..+|+.++..+-..
T Consensus       142 yVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         142 YVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            9999999999998864443322233788889999999999999999999887654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=4.3e-07  Score=81.36  Aligned_cols=287  Identities=17%  Similarity=0.139  Sum_probs=177.8

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      ..++|++..++.+....|-..++.++..+....+.+..  -.+..+.-+++.+....|-+|...|.+++...+....  .
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~  319 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--V  319 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--c
Confidence            45677777777777777766666666655443322211  1334455567777777777777777777765543221  1


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      --+-+..++.|.+..+-.-|+..+-.-+.    +.-...++..+..+..|-+...+..+++.+..++..++...  .-++
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m  393 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMM  393 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHH
Confidence            11234555666665555555544433322    22224455555555555555566666677777776665432  3456


Q ss_pred             HHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHH
Q 019679          189 ALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLP  267 (337)
Q Consensus       189 ~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  267 (337)
                      +.+.+.|++ ...+-+.+.+.++..+.+... + ..+.-+.++++++.|-.  .+.-+...++.++.-......-+..+-
T Consensus       394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~p-d-sKe~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir  469 (865)
T KOG1078|consen  394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENP-D-SKERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIR  469 (865)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHhCc-c-hhhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhH
Confidence            666666665 445778888888888887542 2 24567788888888855  333455555555543322222233444


Q ss_pred             HHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          268 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       268 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      ++.+...=.+..||.+|..+|..++  .+.......+.-.|.+++.|+|.+||..|.-++..+-
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            5555555567899999999999998  3444455678888889999999999999988887765

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.2e-06  Score=76.26  Aligned_cols=228  Identities=18%  Similarity=0.174  Sum_probs=152.5

Q ss_pred             HHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHH
Q 019679           15 LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIM   94 (337)
Q Consensus        15 l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~   94 (337)
                      |+-+.....|+.. -.+.+-+..++++.-+-+|+.|+..+.++....+..  .....|.++.-++|++|.|..+|...++
T Consensus       130 L~GLS~fvTpdLA-RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA--lr~~FprL~EkLeDpDp~V~SAAV~VIC  206 (877)
T KOG1059|consen  130 LSGLSCIVTPDLA-RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA--LRPCFPRLVEKLEDPDPSVVSAAVSVIC  206 (877)
T ss_pred             ecccccccCchhh-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh--HhhhHHHHHHhccCCCchHHHHHHHHHH
Confidence            3333334444443 357888889999999999999999998887655443  2345688888899999999999999999


Q ss_pred             hcCcccChhhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH
Q 019679           95 GMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  173 (337)
Q Consensus        95 ~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~  173 (337)
                      .++..-++..  -.+-|.|.+++.++ +..+-...++-++.+... . .-+.+.++|.+.+++...+  ......+++..
T Consensus       207 ELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl-E-PRLgKKLieplt~li~sT~--AmSLlYECvNT  280 (877)
T KOG1059|consen  207 ELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL-E-PRLGKKLIEPITELMESTV--AMSLLYECVNT  280 (877)
T ss_pred             HHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhcccc-C-chhhhhhhhHHHHHHHhhH--HHHHHHHHHHH
Confidence            9998776543  34678888888654 345555566666666543 1 1233667788887776543  23334445444


Q ss_pred             hHhh---hCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHH
Q 019679          174 LASQ---LGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQ  247 (337)
Q Consensus       174 l~~~---~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~  247 (337)
                      ++..   .|.   .....-.+.-+-.++.|.+++.+..++.+++.+++..  .+..+.-...++.++.|.+..+|..|+.
T Consensus       281 VVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  281 VVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAHKDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             heeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHhHHHHHHHhccCCchhHHHHHH
Confidence            4333   121   1112223333345677888999999999999888775  2234455667788888888888888887


Q ss_pred             HHHHhc
Q 019679          248 AISLLA  253 (337)
Q Consensus       248 ~l~~l~  253 (337)
                      .+-.+.
T Consensus       359 Ll~gmV  364 (877)
T KOG1059|consen  359 LLYGMV  364 (877)
T ss_pred             HHHHHh
Confidence            776654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.90  E-value=8e-09  Score=69.89  Aligned_cols=86  Identities=28%  Similarity=0.422  Sum_probs=57.4

Q ss_pred             HHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           32 VPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        32 ~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      +|.+.+.+ +|+++.+|..++.+++.+..        ...+|.+.++++|+++.||..++.+++.++.        +..+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            35566666 77778888887777774422        2456667777778888888888888877742        4466


Q ss_pred             HHHHHhhcCC-ChhHHHHHHHhHH
Q 019679          111 PIFLSLLKDE-FPDVRLNIISKLD  133 (337)
Q Consensus       111 ~~l~~~l~d~-~~~vr~~a~~~l~  133 (337)
                      +.+.+++.++ +..||..|+.+|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            7777766554 4556777777664

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=6.1e-06  Score=73.61  Aligned_cols=203  Identities=15%  Similarity=0.125  Sum_probs=138.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC--C
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS--D   80 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~--d   80 (337)
                      +-+-||+.++-.+-.+.-..+...  ...+|-+.+-+.|+|+.|..+|+..+..++...++.-.  .+-|.+.+++.  +
T Consensus       156 skpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkllttSs  231 (877)
T KOG1059|consen  156 SKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKLLVTSS  231 (877)
T ss_pred             CchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHHHhccC
Confidence            345688888888888876666554  35699999999999999999999999999998665422  35676766654  4


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHh
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELA  156 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~  156 (337)
                      .||.. --.++.++++...=+.  .-..++|.+.+++.... ..+-..+++++-...-..|   .....+.....+..++
T Consensus       232 NNWmL-IKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fi  308 (877)
T KOG1059|consen  232 NNWVL-IKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFI  308 (877)
T ss_pred             CCeeh-HHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhh
Confidence            56743 3345666666653221  23578888888887654 2444444444433211112   1233456677777888


Q ss_pred             cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  214 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  214 (337)
                      .|.++..|...+-+++.+...-...  ...-.++++.+|.|.+.++|-.|+..+--+.
T Consensus       309 edsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  309 EDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             hcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            9999999999988888887764332  2345677888999999999988877665553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.8e-06  Score=77.79  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHH
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL  308 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l  308 (337)
                      .+-.++.+++-..|..++..+....+.-.  ...+.--..++.+++|++..+|+.|...+-.+...-.-......++.  
T Consensus       317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~--  392 (866)
T KOG1062|consen  317 ILGKFLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLE--  392 (866)
T ss_pred             HHHHHhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHH--
Confidence            33333433333444444444444333211  12334456788999999999999999988888764433333333333  


Q ss_pred             HhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          309 VELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       309 ~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                        ++...+++.+...+..+..++..|.+
T Consensus       393 --fL~~~d~~~k~~~as~I~~laEkfaP  418 (866)
T KOG1062|consen  393 --FLESSDEDFKADIASKIAELAEKFAP  418 (866)
T ss_pred             --HHHhccHHHHHHHHHHHHHHHHhcCC
Confidence              33334666777777777777666654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.88  E-value=3.3e-08  Score=67.03  Aligned_cols=82  Identities=23%  Similarity=0.352  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCc
Q 019679          242 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       242 R~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~  317 (337)
                      |..++.++..++..++..  .+.+.++|.++.++.|+++.||..|+++|..+++..+.+.  +...+.+.|.++..|+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            555666666655555532  3455666777777777777777777777777766666542  345666666667777777


Q ss_pred             cHHHHH
Q 019679          318 DVRFFA  323 (337)
Q Consensus       318 ~vr~~a  323 (337)
                      +||..|
T Consensus        83 ~Vr~~a   88 (97)
T PF12755_consen   83 NVRSAA   88 (97)
T ss_pred             hHHHHH
Confidence            776544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.88  E-value=1.7e-07  Score=72.18  Aligned_cols=111  Identities=16%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +|.||-.++.+++.++...+.-.  ...+|.+...+.|+++.||+.|+..+..+...-.- .....++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCH
Confidence            57899999999999998887543  45689999999999999999999999988764211 2223444555567899999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL  117 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  117 (337)
                      .||..|...+..+....++......+.+.+..+-
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~  111 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLN  111 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence            9999999999999987555555555555554443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.1e-05  Score=75.25  Aligned_cols=325  Identities=16%  Similarity=0.095  Sum_probs=193.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC---hHH--HHHHHHHhHHHHHHhhCHHHHHHh---hhHhhH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN---EAE--VRIAAAGKVTKICRILNPELAIQH---ILPCVK   75 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~---~~~--vR~~a~~~l~~~~~~~~~~~~~~~---ll~~l~   75 (337)
                      +|..|+.++-.++.+...  ++. .+.++.++.-.+..+   .+.  +.-..+..+.++.+..+.+....+   .+..+.
T Consensus       188 ~~~~r~~aalllsk~~sR--~D~-~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~  264 (1133)
T KOG1943|consen  188 SGILRRSAALLLSKLFSR--TDV-KDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLS  264 (1133)
T ss_pred             cchhHHHHHHHHHHHccc--ccH-HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhc
Confidence            566777777776655421  111 112333333333222   222  445666777778777666533222   222222


Q ss_pred             Hh--cCCCcHHHHHHHHHHHHhcCccc----------------------------------------Chh--hHHhhhHH
Q 019679           76 EL--SSDSSQHVRSALATVIMGMAPIL----------------------------------------GKD--ATIEQLLP  111 (337)
Q Consensus        76 ~l--~~d~~~~vr~~a~~~l~~l~~~~----------------------------------------~~~--~~~~~l~~  111 (337)
                      ..  .+|...-+|+..++.+-.++-..                                        +++  ...+.++.
T Consensus       265 ~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie  344 (1133)
T KOG1943|consen  265 VCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIE  344 (1133)
T ss_pred             ccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHH
Confidence            22  12333466666666665443210                                        001  12346788


Q ss_pred             HHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhh-ChhhHHHHHHH
Q 019679          112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGA  189 (337)
Q Consensus       112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~  189 (337)
                      .+.+.++|.+..||..|+++++.+.+..+.+ +...++..+.++.. -++...-++++-++..++..- -.....+.++|
T Consensus       345 ~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvp  423 (1133)
T KOG1943|consen  345 HLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVP  423 (1133)
T ss_pred             HHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            8889999999999999999999999987743 33444444444321 112333447777777777542 22234567899


Q ss_pred             HHHHHcccc--------chHHHHHHHHHHHHHHHHhChHHH---HhhHHHHH-HHhhcCcchHHHHHHHHHHHHhccccC
Q 019679          190 LCMQWLKDK--------VYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQV-LEMINNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       190 ~l~~~l~d~--------~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l-~~~~~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                      .+...+.-+        ...||.+|+.....++....+..+   .+.+.+.+ ...+=|++...|.+|.-++.......|
T Consensus       424 lI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~  503 (1133)
T KOG1943|consen  424 LILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQG  503 (1133)
T ss_pred             HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCC
Confidence            998888643        357999999999999998876543   23344443 344458888999888877766543221


Q ss_pred             h-----H------H-------------------HHhhHHHHHHhh----ccCCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679          258 S-----E------I-------------------TCSQLLPVVINA----SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  303 (337)
Q Consensus       258 ~-----~------~-------------------~~~~l~~~l~~~----l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  303 (337)
                      .     +      +                   |..+.-|.+..+    +..-+..+|..++.+|..+...- ++.....
T Consensus       504 n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-pk~~a~~  582 (1133)
T KOG1943|consen  504 NFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-PKYLADY  582 (1133)
T ss_pred             CCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-HHhhccc
Confidence            1     1      0                   011122233322    55667899999999999976543 3444456


Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ++|-+......++...|..+..+.+.+...
T Consensus       583 ~L~~lld~~ls~~~~~r~g~~la~~ev~~~  612 (1133)
T KOG1943|consen  583 VLPPLLDSTLSKDASMRHGVFLAAGEVIGA  612 (1133)
T ss_pred             chhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence            666666666667788888888877776654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.84  E-value=4.1e-08  Score=66.38  Aligned_cols=86  Identities=29%  Similarity=0.432  Sum_probs=65.3

Q ss_pred             HHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhh
Q 019679          227 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR  305 (337)
Q Consensus       227 ~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~  305 (337)
                      +|.+.+.+ +++++.+|..++.+++.+    +    .+..+|.+..+++|+++.||.+++.+|+.++.        ....
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----G----DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45666766 788899999998888843    2    23678888888899999999999999998842        4567


Q ss_pred             HHHHhhhCC-CCccHHHHHHHHHH
Q 019679          306 PCLVELSED-PDVDVRFFATQALQ  328 (337)
Q Consensus       306 ~~l~~l~~d-~~~~vr~~a~~al~  328 (337)
                      +.|..++.| ++..||..|+++|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            777775554 45667988988875

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.82  E-value=1e-06  Score=71.23  Aligned_cols=191  Identities=9%  Similarity=0.090  Sum_probs=138.0

Q ss_pred             chHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHH--hhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679           30 DVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQ--HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  106 (337)
Q Consensus        30 ~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~--~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  106 (337)
                      +-+..+..+++ .++|.+++.+..+++..+.+-.......  ..++.+..++.++++.+|..|+.++.+++.........
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I   91 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI   91 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence            44566667776 4689999999999998766543333322  37899999999999999999999999998766555444


Q ss_pred             hhhHHHHHHhh-cC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hhh
Q 019679          107 EQLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF  182 (337)
Q Consensus       107 ~~l~~~l~~~l-~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~  182 (337)
                      +..++.+++.. .+ .+..++.++++.|..+.-......+....+|.+..++...+..+|..++..+..++....  .+.
T Consensus        92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~L  171 (254)
T PF04826_consen   92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTREL  171 (254)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHH
Confidence            54555555543 33 367899999999998864433334445577888888888888999999999999887643  334


Q ss_pred             HHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChH
Q 019679          183 FDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      ...+..+.++.++... ..++...++..+..+...+..+
T Consensus       172 l~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  172 LSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            4455666777777654 5677777777777777666443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.82  E-value=7.5e-07  Score=68.65  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchH
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR  162 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~  162 (337)
                      |.||..++-++|.++..++.  ..+..+|.+...++|+++.||+.|+..+..+... +.-.+...++..+...+.|+++.
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            45666666666665554442  2344555666666666666666666666555443 22222233444445555666666


Q ss_pred             HHHHHHHHhhHhHhhhChhhHHHHHHHHHH
Q 019679          163 VRLAIIEYIPLLASQLGVGFFDDKLGALCM  192 (337)
Q Consensus       163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  192 (337)
                      +|..+...+..+....+++.+.+.+.+.+.
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~  108 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELIS  108 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            666666666666555444444443444433

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.81  E-value=6.7e-07  Score=70.22  Aligned_cols=75  Identities=25%  Similarity=0.256  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ...++..+-.+|++.        ..+-+|.+...+.|.  .+-||..|.++|+.++.        ...++.+.+..+|+-
T Consensus        50 ~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~~l~k~~~dp~  113 (289)
T KOG0567|consen   50 ALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLEILTKYIKDPC  113 (289)
T ss_pred             hhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHHHHHHHhcCCc
Confidence            334444555555443        234566666666553  36667777777766652        234455555556666


Q ss_pred             HHHHHHHHHHHHh
Q 019679           83 QHVRSALATVIMG   95 (337)
Q Consensus        83 ~~vr~~a~~~l~~   95 (337)
                      ..||..+..++..
T Consensus       114 ~~v~ETc~lAi~r  126 (289)
T KOG0567|consen  114 KEVRETCELAIKR  126 (289)
T ss_pred             cccchHHHHHHHH
Confidence            6666655444443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.81  E-value=3.9e-07  Score=84.42  Aligned_cols=198  Identities=15%  Similarity=0.167  Sum_probs=155.3

Q ss_pred             hCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679           61 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        61 ~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  137 (337)
                      +.+.++.+.+-+-+...+.|++|.-|..+++.+....+.-+   .......+...+.....|.+-.|...++..+..++.
T Consensus       245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~  324 (815)
T KOG1820|consen  245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK  324 (815)
T ss_pred             CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence            34445667777778888889999999999999988776444   122234555566666789999999999999999998


Q ss_pred             hhchh--hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          138 VIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       138 ~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      ..+..  .+...++|.+...+.+....+|..+..++..++...    ....+.+.+..++++.++.+|..+...+.....
T Consensus       325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~----~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST----PLSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            87753  345668888888889999999999988888887743    345678888889999999999999888888888


Q ss_pred             HhCh----HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679          216 EFGP----DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  262 (337)
Q Consensus       216 ~~~~----~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  262 (337)
                      ..++    ......+.|++....+|.+..||.++..+++.+...+|.+.+.
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~  451 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK  451 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7763    2235678899999999999999999999999988888876554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.79  E-value=8.9e-05  Score=65.41  Aligned_cols=302  Identities=17%  Similarity=0.164  Sum_probs=191.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCC---c----cc-chHHHHHHhcCC-----C--hHHHHHHHHHhHHHHHHhhCHHHHHH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEP---T----RS-DVVPAYVRLLRD-----N--EAEVRIAAAGKVTKICRILNPELAIQ   68 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~---~----~~-~l~~~l~~~~~d-----~--~~~vR~~a~~~l~~~~~~~~~~~~~~   68 (337)
                      +...-+.+++++..+......+.   .    .+ .++|.+.+...+     .  ++.+-..+...+..+...++.+...+
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            34455666777777766554333   1    11 267777666622     1  25666677777777777777764432


Q ss_pred             hhhHhhHHhcC----------CCc------HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHh
Q 019679           69 HILPCVKELSS----------DSS------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISK  131 (337)
Q Consensus        69 ~ll~~l~~l~~----------d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~  131 (337)
                      . +..+..+.-          +.+      ...-......++.+-+...-. ....++..+..+.. ..++..|..+++.
T Consensus       136 ~-~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~  213 (415)
T PF12460_consen  136 I-LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL  213 (415)
T ss_pred             H-HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            2 222222111          111      111122333344444322211 12345566666544 4458999999999


Q ss_pred             HHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHHHH
Q 019679          132 LDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAAN  208 (337)
Q Consensus       132 l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  208 (337)
                      +..++.....+...+.++..+.... .......|...++.+.-+.+.+  ........+++.+++++.|  +.+...+++
T Consensus       214 la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~  291 (415)
T PF12460_consen  214 LASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAK  291 (415)
T ss_pred             HHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHH
Confidence            9999988765544455555555544 4555566777777666665554  1122345678888888888  778888999


Q ss_pred             HHHHHHHHhC---------------hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH---HhhHHHHHH
Q 019679          209 NVKRLAEEFG---------------PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVI  270 (337)
Q Consensus       209 ~l~~~~~~~~---------------~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~  270 (337)
                      +++.+....+               .+.+...++|.+.+.+++.+...|..++.++..+.+......+   .+.++|.++
T Consensus       292 ~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLl  371 (415)
T PF12460_consen  292 AFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLL  371 (415)
T ss_pred             HHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            9988865421               1233556889999998887777899999999999888886654   457999999


Q ss_pred             hhccCCChhHHHHHHHHHHHHhhhhcHHHH---HHhhhHHHHh
Q 019679          271 NASKDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVE  310 (337)
Q Consensus       271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~  310 (337)
                      +.+.-++..++.++..+|..+...- ++.+   .+.++|.|.+
T Consensus       372 qsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~  413 (415)
T PF12460_consen  372 QSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLK  413 (415)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998765 3323   3345555443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=3.6e-05  Score=71.88  Aligned_cols=324  Identities=17%  Similarity=0.140  Sum_probs=189.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc--
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS--   78 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~--   78 (337)
                      +|++-.+||++..++.+.....|..-.--+++    ...+.-.-.-|..+...+.......+     .+.-|.+..++  
T Consensus       481 FDrevncRRAAsAAlqE~VGR~~n~p~Gi~Li----s~~dy~sV~~rsNcy~~l~~~ia~~~-----~y~~~~f~~L~t~  551 (1133)
T KOG1943|consen  481 FDREVNCRRAASAALQENVGRQGNFPHGISLI----STIDYFSVTNRSNCYLDLCVSIAEFS-----GYREPVFNHLLTK  551 (1133)
T ss_pred             cCchhhHhHHHHHHHHHHhccCCCCCCchhhh----hhcchhhhhhhhhHHHHHhHHHHhhh-----hHHHHHHHHHHhc
Confidence            57888888888888887776555432111111    12222223345554444443333222     23334444444  


Q ss_pred             --CCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-----HH------
Q 019679           79 --SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-----LS------  145 (337)
Q Consensus        79 --~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~------  145 (337)
                        .+=+..+|..++.+|.++...-++ ...+..+|.++...-..+...|..+..+.+.+......-.     +.      
T Consensus       552 Kv~HWd~~irelaa~aL~~Ls~~~pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~  630 (1133)
T KOG1943|consen  552 KVCHWDVKIRELAAYALHKLSLTEPK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG  630 (1133)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhhHH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence              344678999999999998765553 3456677777777777889999998888877765432110     10      


Q ss_pred             -hhHHHHHHHHhcCCc--hHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC-
Q 019679          146 -QSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-  218 (337)
Q Consensus       146 -~~llp~l~~~~~d~~--~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-  218 (337)
                       ..++|.+....-...  .-.|.+....+..+...-.   .+.+.+..-.++...+.+++ .+|+++..+++.+...+- 
T Consensus       631 l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~  709 (1133)
T KOG1943|consen  631 LLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK  709 (1133)
T ss_pred             hhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence             112333322221111  3345555555554443321   23444555556666667777 999999999999987651 


Q ss_pred             -hHHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhh
Q 019679          219 -PDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV  295 (337)
Q Consensus       219 -~~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~  295 (337)
                       .+.....++.....-+.+ .+.++|.....+++.+....-.....+++...++.... |-+++-|+..+.++..+.+.+
T Consensus       710 ~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~  789 (1133)
T KOG1943|consen  710 ADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTV  789 (1133)
T ss_pred             cCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHH
Confidence             111112243444444444 46888988888887765322122234445455555443 337888999999999999887


Q ss_pred             cH-------HHHHHhhhHHHHhhhCCCCcc----HHHHHHHHHHHHHHhhh
Q 019679          296 DQ-------SVVEKSIRPCLVELSEDPDVD----VRFFATQALQSKDQVMM  335 (337)
Q Consensus       296 ~~-------~~~~~~i~~~l~~l~~d~~~~----vr~~a~~al~~l~~~~~  335 (337)
                      +.       +.+.+.++.++.....|.-.+    ||..|.+++..+.....
T Consensus       790 ~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  790 TSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS  840 (1133)
T ss_pred             HHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence            72       234455666666665555433    79999999998876554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.73  E-value=2.4e-06  Score=69.06  Aligned_cols=212  Identities=13%  Similarity=0.098  Sum_probs=110.9

Q ss_pred             HHHHhhc-CCChhHHHHHHHhHHHhHhhhchhh-HHh-hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          112 IFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDL-LSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       112 ~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      .+..+++ .++|.+++.+..+++..+.....+. +.+ ..++.+.+++.++++.+|..++.++..++.........+..+
T Consensus        16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i   95 (254)
T PF04826_consen   16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYI   95 (254)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence            3334443 3355666666665555443322111 111 245555566666666666666665555544432222222233


Q ss_pred             HHHHHH-ccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--hHHHHhh
Q 019679          189 ALCMQW-LKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--SEITCSQ  264 (337)
Q Consensus       189 ~~l~~~-l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~  264 (337)
                      +-+.+. ..+ .+..++.++++.|..+.-...........+|.+..++...+...|..++..+..++..-.  .+.....
T Consensus        96 ~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q  175 (254)
T PF04826_consen   96 PQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQ  175 (254)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhcc
Confidence            333322 222 245666667777776654333333344456666667766666677777777777765432  3333444


Q ss_pred             HHHHHHhhccCC-ChhHHHHHHHHHHHHhhhhcHH----------------H--HHHhhhHHHHhhhCCCCccHHHHH
Q 019679          265 LLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS----------------V--VEKSIRPCLVELSEDPDVDVRFFA  323 (337)
Q Consensus       265 l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~----------------~--~~~~i~~~l~~l~~d~~~~vr~~a  323 (337)
                      .++.+..++... ..++-..++..+..+.+.++.+                .  -.+.+..-|..+...+|++||..+
T Consensus       176 ~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  176 VLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             chhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            555666666544 4566666777777776554332                0  012355555566677888888654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.72  E-value=1.7e-07  Score=67.39  Aligned_cols=107  Identities=18%  Similarity=0.170  Sum_probs=75.8

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--H
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V  299 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~  299 (337)
                      .+++.+.+++.+.++.+|..++.+++.++....   ........+|.+.+++.|+++.+|..++.+|+.++...+..  .
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            467777777777778888888888888775422   12223367888888888888888888888888887654321  1


Q ss_pred             -HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          300 -VEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       300 -~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                       ....+++.+.+++++.+.++|..++.+|..+.
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             22346777878777778888888888887764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=3.4e-06  Score=75.85  Aligned_cols=273  Identities=12%  Similarity=0.133  Sum_probs=181.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      ..+|-..++.++..+....+-...  ..+..+.-++..+....|-+|..+|.+++-..+....  ..-.-+..+++|.|.
T Consensus       258 ~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~Nr  333 (865)
T KOG1078|consen  258 SEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNR  333 (865)
T ss_pred             hHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhccccc
Confidence            445566666666655544333332  2566777788899999999999999999887655421  223345668899998


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchH
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWR  162 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~  162 (337)
                      .+-..|...+-+-+.    +...+.++..+..+..|-+.+.+..++.++..++..++...  ..+++.+..++. +....
T Consensus       334 sIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e  407 (865)
T KOG1078|consen  334 SIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFE  407 (865)
T ss_pred             chhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCch
Confidence            888888887776664    55566777777788777777777777777777776654322  346677766654 44557


Q ss_pred             HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH
Q 019679          163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR  242 (337)
Q Consensus       163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR  242 (337)
                      -+...++++..++......  .+.-+..+..++.|..  .++.+..-+..+++.......-...+.++.+..-=.+..+|
T Consensus       408 ~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivR  483 (865)
T KOG1078|consen  408 FKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVR  483 (865)
T ss_pred             HHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhH
Confidence            7888888888887754321  1223444445555543  34555555655554322111112334444444334578899


Q ss_pred             HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      .+|+.++..++  .+.+...+.+.-.+..++.|.+.+||.+|.-.|..+-
T Consensus       484 aaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  484 AAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            99999999987  5555567788888889999999999999988888775

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.4e-05  Score=71.66  Aligned_cols=280  Identities=14%  Similarity=0.118  Sum_probs=136.4

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHH
Q 019679           35 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL  114 (337)
Q Consensus        35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  114 (337)
                      +.+-+++||.-+|-..+..|.++    ...+....++|.+.+.+++.+..||+.|.-++..+-..+.  ....+.-..+.
T Consensus       104 ~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~  177 (948)
T KOG1058|consen  104 YRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIE  177 (948)
T ss_pred             HhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHH
Confidence            34445677888888877666644    4445667789999999999999999999988888775421  11112222222


Q ss_pred             Hh-hcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH
Q 019679          115 SL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  193 (337)
Q Consensus       115 ~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  193 (337)
                      ++ ..+.++..+++|+-.|...-+...-    +.+...+ .-+.+-+...+...++.+-..+..-+.  -...++..+.+
T Consensus       178 ~fL~~e~DpsCkRNAFi~L~~~D~ErAl----~Yl~~~i-dqi~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i~~  250 (948)
T KOG1058|consen  178 SFLLTEQDPSCKRNAFLMLFTTDPERAL----NYLLSNI-DQIPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCIYN  250 (948)
T ss_pred             HHHHhccCchhHHHHHHHHHhcCHHHHH----HHHHhhH-hhccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHHHH
Confidence            22 3467788888887666544321100    0000000 000111112222223333222221111  11223333444


Q ss_pred             HccccchHHHHHH-----------------HHHHHHHHHHh------------------ChHHHHhhHHHHHHHhhcCcc
Q 019679          194 WLKDKVYSIRDAA-----------------ANNVKRLAEEF------------------GPDWAMQHIVPQVLEMINNPH  238 (337)
Q Consensus       194 ~l~d~~~~vr~~a-----------------~~~l~~~~~~~------------------~~~~~~~~l~~~l~~~~~~~~  238 (337)
                      +|..+++.|+..|                 +.++-.+....                  +.+.+.+.++--++..+..++
T Consensus       251 lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~d  330 (948)
T KOG1058|consen  251 LLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPD  330 (948)
T ss_pred             HHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccc
Confidence            4433333333222                 22222211111                  112223444444555666677


Q ss_pred             hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhh---ccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCC
Q 019679          239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP  315 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~  315 (337)
                      ..+|..++...-.++..-.-+.....+-.-+.+.   =+|++..-|+..+++++..+-.++.  +...+.|.|.....|.
T Consensus       331 ldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~  408 (948)
T KOG1058|consen  331 LDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDS  408 (948)
T ss_pred             ccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccC
Confidence            7777777766666655443332222222222221   1344456677777777777666653  3456666666666665


Q ss_pred             CccHHHHHHHHHHH
Q 019679          316 DVDVRFFATQALQS  329 (337)
Q Consensus       316 ~~~vr~~a~~al~~  329 (337)
                      ++.--......+..
T Consensus       409 N~~aas~vl~FvrE  422 (948)
T KOG1058|consen  409 NEAAASDVLMFVRE  422 (948)
T ss_pred             CHHHHHHHHHHHHH
Confidence            54433333333333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=6.9e-06  Score=74.67  Aligned_cols=176  Identities=19%  Similarity=0.208  Sum_probs=129.8

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                      .+.|+.+.+|..++..+..+.+...  .-.....++.++...++|.++.|--+|++++..+++...     +.++|.+.+
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~e  809 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLSE  809 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHHH
Confidence            4568888899999999988887332  222346789999999999999999999999999988754     345555554


Q ss_pred             ----HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHHhh
Q 019679          155 ----LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQH  225 (337)
Q Consensus       155 ----~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~  225 (337)
                          .-+......|.-+-+++..+++..|+-.  +...++..++....|++...|..++..+|.+++...   .++ ...
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~-~~e  888 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF-FHE  888 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH-HHH
Confidence                2233323344444488888888887643  556788999999999999999999999999987653   343 333


Q ss_pred             HHHHHHHhh-cCcchHHHHHHHHHHHHhccccCh
Q 019679          226 IVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGS  258 (337)
Q Consensus       226 l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~  258 (337)
                      ++..+.... .|.+..+|.+|+..+..+-...|.
T Consensus       889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~  922 (982)
T KOG4653|consen  889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE  922 (982)
T ss_pred             HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence            444444444 477899999999999988777763

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.66  E-value=3.5e-07  Score=65.76  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh-
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-  104 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-  104 (337)
                      ..++|.+.+.+.+.++.+|..++.++..++...+..   .....++|.+.++++|+++.+|..++.++++++...+... 
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            347889999999999999999999999998763222   2334789999999999999999999999999997654211 


Q ss_pred             --HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679          105 --TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  136 (337)
Q Consensus       105 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  136 (337)
                        ....+++.+.+.+.+.+..+|..++..+..++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence              22458999999999999999999999988775

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.65  E-value=7.7e-05  Score=58.96  Aligned_cols=93  Identities=16%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc--CCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679          226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVEKS  303 (337)
Q Consensus       226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  303 (337)
                      -+..+.+-+.+++.-.|-.+...+|++-.        +.-+|.+.+.|.  .+++-||-.|+.+|+.++.        +.
T Consensus       188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~  251 (289)
T KOG0567|consen  188 AINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------ED  251 (289)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HH
Confidence            44556666677777788888778877542        234455555554  4457899999999999975        68


Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      .++.|.++++|+++-||..+.-+|...-...
T Consensus       252 ~~~vL~e~~~D~~~vv~esc~valdm~eyen  282 (289)
T KOG0567|consen  252 CVEVLKEYLGDEERVVRESCEVALDMLEYEN  282 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence            8889999999999999999998888765443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.63  E-value=9.2e-05  Score=68.37  Aligned_cols=300  Identities=17%  Similarity=0.205  Sum_probs=180.2

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--h
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D  103 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~  103 (337)
                      ...+++.+...+..++.++...++..|.+++-.-..  ......++|.+.+++..++..++..++..|.+++..-.-  .
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~  367 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ  367 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            346899999999989999999998888887643222  233456889999999999999999999999999863322  2


Q ss_pred             hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-H-HhhHHHHHHHHh-cCCchHHHHHHHH-----------
Q 019679          104 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVELA-EDRHWRVRLAIIE-----------  169 (337)
Q Consensus       104 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~llp~l~~~~-~d~~~~vr~~~~~-----------  169 (337)
                      .....++|.+..++.|+  ..+..++..|..++..-.... + ....+|.+.+++ ..++.++...++.           
T Consensus       368 mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn  445 (708)
T PF05804_consen  368 MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN  445 (708)
T ss_pred             HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH
Confidence            23356889999999874  455566666666654311111 1 122445544432 2222222222221           


Q ss_pred             ---------------------------HhhHhHhhhChh--hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHh--
Q 019679          170 ---------------------------YIPLLASQLGVG--FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEF--  217 (337)
Q Consensus       170 ---------------------------~l~~l~~~~~~~--~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~--  217 (337)
                                                 .+..++++-|+.  .+.+ ++.-+...+.. ++++   ..+.++|.++..-  
T Consensus       446 aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~  521 (708)
T PF05804_consen  446 AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIP  521 (708)
T ss_pred             HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccC
Confidence                                       222222222111  1222 22222233333 2333   3444444444321  


Q ss_pred             ChHH--H--HhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHH--HHhhHHHHHHhhccCC--ChhHHHHHHHH
Q 019679          218 GPDW--A--MQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKV  287 (337)
Q Consensus       218 ~~~~--~--~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~  287 (337)
                      +.++  +  ...++|.+.+.+....  ..+...++.++|.++..-....  ..+.+++.+..++...  +.+.-...+.+
T Consensus       522 ~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~  601 (708)
T PF05804_consen  522 DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYV  601 (708)
T ss_pred             CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHH
Confidence            1122  2  2368999999987542  4566777888888775433222  2446777777777443  35666677777


Q ss_pred             HHHHhhhhcHHHH---HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          288 LQSLIPIVDQSVV---EKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       288 l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +.++..+=.....   ...+..-|..+..|++++||..|-.+|.-++..
T Consensus       602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            7777655332211   235677778899999999999999999988764

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=9.4e-05  Score=63.55  Aligned_cols=255  Identities=14%  Similarity=0.084  Sum_probs=156.0

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhhh-HhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHIL-PCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  106 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll-~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  106 (337)
                      .++-.+.+-..|++..+|..|+.+|+..++..+.+.  +.+.++ -++..+..+.+..|...++.++..+.+........
T Consensus       258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~  337 (533)
T KOG2032|consen  258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE  337 (533)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence            456666667789999999999999999999976652  333334 45566777778899999999999888766655555


Q ss_pred             hhhHHH---HHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHH---HhcCCchHHHHHHHHHhhHhHhh
Q 019679          107 EQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       107 ~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~---~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      ..++++   +..++.|.++++|.+++..++.+....|.   +.+.+.+...+..   .++|+++.+-.++-..+..    
T Consensus       338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~----  413 (533)
T KOG2032|consen  338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT----  413 (533)
T ss_pred             hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh----
Confidence            555554   45677899999999999999999988763   2333333333322   3578888766555444333    


Q ss_pred             hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcch-HHHHHHHHHHHHhcc
Q 019679          178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAP  254 (337)
Q Consensus       178 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~-~vR~~~~~~l~~l~~  254 (337)
                      +++....+.+-..+-+.+ |.... |..+...  .++..+.+.  ...-.+......++ ..+| .+|.++....+.+..
T Consensus       414 c~p~l~rke~~~~~q~~l-d~~~~-~~q~Fyn--~~c~~L~~i~~d~l~~~~t~~~~~f-~sswe~vr~aavl~t~~~vd  488 (533)
T KOG2032|consen  414 CYPNLVRKELYHLFQESL-DTDMA-RFQAFYN--QWCIQLNHIHPDILMLLLTEDQHIF-SSSWEQVREAAVLKTTRSVD  488 (533)
T ss_pred             cCchhHHHHHHHHHhhhh-HHhHH-HHHHHHH--HHHHHHhhhCHHHHHHHHHhchhhe-ecchHHHHHHHHHHHHHHHH
Confidence            333333333444444333 22221 2222111  111111000  00111111112222 2456 788888877777654


Q ss_pred             ccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          255 VMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       255 ~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                      ......    ....+...+..+..|+.++|+..+.++++.+..
T Consensus       489 ~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  489 SLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            443321    233566677788899999999999999987653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=7.7e-05  Score=66.73  Aligned_cols=272  Identities=13%  Similarity=0.046  Sum_probs=163.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      +...+.+-+.+.|+..-..|+.+++.+++.-..+.+...+-..+  ...+..+.||+.++-++-.+.+..++-.-.....
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlL--vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~  189 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLL--VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWA  189 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHH--hCCcchHHHHHHHHHHHHHHHhcCccccChhhHH
Confidence            34445555556677777778888887776544443333333222  2346677899988888888777655433345667


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------------------------------HHhhHHHHHHHHh
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------------------------------LSQSLLPAIVELA  156 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------------------------------~~~~llp~l~~~~  156 (337)
                      ..+..++.|.+-.|-.++..-+..+++...++.                                  +.-.++..+...-
T Consensus       190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p  269 (938)
T KOG1077|consen  190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP  269 (938)
T ss_pred             HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence            778888888877776666666666665543210                                  0011222222222


Q ss_pred             cCCchHHHHHHHHHhhHhHhhhC------------------------------hhhHHHHHHHHHHHHccccchHHHHHH
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLG------------------------------VGFFDDKLGALCMQWLKDKVYSIRDAA  206 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a  206 (337)
                      .-+++.+|....+++..+.....                              ...........+-.++.+.+.++|.-+
T Consensus       270 ~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLa  349 (938)
T KOG1077|consen  270 TPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLA  349 (938)
T ss_pred             CCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhh
Confidence            23344555555555555543322                              111223344444455666777777777


Q ss_pred             HHHHHHHHHHh-ChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHH
Q 019679          207 ANNVKRLAEEF-GPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       207 ~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                      +.++..++..- ..+.+. .-...+...++ +++..+|..++..+=.++..-..+    .++.-+++++..-++.+|...
T Consensus       350 LEsm~~L~ss~~s~davK-~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  350 LESMCKLASSEFSIDAVK-KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLETADYSIREEI  424 (938)
T ss_pred             HHHHHHHHhccchHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHhhcchHHHHHH
Confidence            77777666431 122222 23556666666 788899999999888877644333    566666777777888999999


Q ss_pred             HHHHHHHhhhhcHH--HHHHhhhHHHH
Q 019679          285 AKVLQSLIPIVDQS--VVEKSIRPCLV  309 (337)
Q Consensus       285 ~~~l~~i~~~~~~~--~~~~~i~~~l~  309 (337)
                      +--.+.+++.+..+  ++.+-++.++.
T Consensus       425 vlKvAILaEKyAtDy~WyVdviLqLir  451 (938)
T KOG1077|consen  425 VLKVAILAEKYATDYSWYVDVILQLIR  451 (938)
T ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence            99999999888765  45555555554

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.58  E-value=0.00055  Score=66.52  Aligned_cols=131  Identities=19%  Similarity=0.147  Sum_probs=99.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      +...+|-.|++++..+...-+.-...+.+...+.+-+.|....||.+|++.+|.+.-..+.  ........+..-+.|+.
T Consensus       828 ~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtg  905 (1692)
T KOG1020|consen  828 NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYDQIIERILDTG  905 (1692)
T ss_pred             chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCc
Confidence            4567899999999998876555555677888888888999999999999999988654332  23344566777888999


Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  135 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  135 (337)
                      ..||+=+++.+..++...+.-....++.--++.-..|++..|...+...+..+
T Consensus       906 vsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  906 VSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             hhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            99999999999999987765444445555555566787777888877776554

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.56  E-value=0.00039  Score=61.90  Aligned_cols=330  Identities=18%  Similarity=0.109  Sum_probs=193.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHH-----HHHHhhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPE-----LAIQHILP   72 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~   72 (337)
                      |++..+.+.++..++..+......   ..+...+|.+.+++.+++ ..++..+..++..+.+..+..     .....+++
T Consensus        64 ~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~  143 (678)
T KOG1293|consen   64 DGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIV  143 (678)
T ss_pred             CCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHH
Confidence            567777777888888777554432   234567899999999998 899999999999988764221     11112222


Q ss_pred             hhHH-----------------------------------------hcCCCcHHHHHHHHHHHHhcCcccChh--------
Q 019679           73 CVKE-----------------------------------------LSSDSSQHVRSALATVIMGMAPILGKD--------  103 (337)
Q Consensus        73 ~l~~-----------------------------------------l~~d~~~~vr~~a~~~l~~l~~~~~~~--------  103 (337)
                      .+..                                         +....+..+|.++..++..-...+-.+        
T Consensus       144 ~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l  223 (678)
T KOG1293|consen  144 KFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLL  223 (678)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHH
Confidence            1111                                         111235688899999888322221110        


Q ss_pred             --hHHhhhHH--HHHHhhcCCChhHHHHHHHhHHHhHhhhc-hh--------------hHH-------------------
Q 019679          104 --ATIEQLLP--IFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID--------------LLS-------------------  145 (337)
Q Consensus       104 --~~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~--------------~~~-------------------  145 (337)
                        .....+.+  .+.++.+|.++.-|-.++.++..+...-. .+              .+.                   
T Consensus       224 ~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~  303 (678)
T KOG1293|consen  224 GLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHT  303 (678)
T ss_pred             HHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhh
Confidence              11134444  56677888888888888888776654421 00              000                   


Q ss_pred             --------------------hhHHHHHHHHh------cCCchHHHHHHHHHh---hHhHhhhCh---hhHHH-HHHHHHH
Q 019679          146 --------------------QSLLPAIVELA------EDRHWRVRLAIIEYI---PLLASQLGV---GFFDD-KLGALCM  192 (337)
Q Consensus       146 --------------------~~llp~l~~~~------~d~~~~vr~~~~~~l---~~l~~~~~~---~~~~~-~l~~~l~  192 (337)
                                          ...+|...+++      +...++.|.-++...   ...+...+.   ..+.+ .....+.
T Consensus       304 ~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~  383 (678)
T KOG1293|consen  304 NVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM  383 (678)
T ss_pred             hhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence                                00001111110      111122222211110   011111110   00111 1111111


Q ss_pred             HHccccchHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHH
Q 019679          193 QWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLL  266 (337)
Q Consensus       193 ~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~  266 (337)
                      ....-.+..++.+++.++..++....   ...-...+...+++.+.|+...+..+++.++..+.--++   ..+.....+
T Consensus       384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI  463 (678)
T KOG1293|consen  384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI  463 (678)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence            12223455677888887777765542   111133455666677799999999999999999875555   345567799


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      ..+.+++.++.+.+|..+.+.|..+.-.....    .....-...+..+.+|++|.|+..+.+.+.++.
T Consensus       464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999887554432    222344555667899999999999988887764

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=0.00013  Score=65.45  Aligned_cols=226  Identities=15%  Similarity=0.124  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHHHHHhcCCch
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHW  161 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l~~~~~d~~~  161 (337)
                      +|-+.++..+..+-..-..++..+.++..+++....++..||..+++-+..+....+  .+.+.+.+...+...+.|..+
T Consensus        61 RIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep  140 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP  140 (892)
T ss_pred             HHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc
Confidence            344444444444444333333445555555566666677777777777777766433  244446666666666777777


Q ss_pred             HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      .||..++.++..+=..-+.+.+  .+...+..++ .|++++||.+++.++..     +     ..-.|.+++-..|-+..
T Consensus       141 ~VRiqAv~aLsrlQ~d~~dee~--~v~n~l~~liqnDpS~EVRRaaLsnI~v-----d-----nsTlp~IveRarDV~~a  208 (892)
T KOG2025|consen  141 NVRIQAVLALSRLQGDPKDEEC--PVVNLLKDLIQNDPSDEVRRAALSNISV-----D-----NSTLPCIVERARDVSGA  208 (892)
T ss_pred             hHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCCcHHHHHHHHHhhcc-----C-----cccchhHHHHhhhhhHH
Confidence            7777777777766532222111  1223333333 46777777777666542     1     12446666666665544


Q ss_pred             HHHH-HHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHH-HhhhhcHHHHHHhhhHHHHhhhCCCCcc
Q 019679          241 YRMT-ILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSVVEKSIRPCLVELSEDPDVD  318 (337)
Q Consensus       241 vR~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~-i~~~~~~~~~~~~i~~~l~~l~~d~~~~  318 (337)
                      +|.. .-.++..+ .....  -...-.-.+-..+.|....||.++...+.. +....     ...++..|..+--..+.+
T Consensus       209 nRrlvY~r~lpki-d~r~l--si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~  280 (892)
T KOG2025|consen  209 NRRLVYERCLPKI-DLRSL--SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSE  280 (892)
T ss_pred             HHHHHHHHhhhhh-hhhhh--hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchH
Confidence            4433 33444443 11110  112344455566677777777766655433 21111     124444555444444445


Q ss_pred             HHHHHHHHHHH
Q 019679          319 VRFFATQALQS  329 (337)
Q Consensus       319 vr~~a~~al~~  329 (337)
                      |+..+.+|+-.
T Consensus       281 vavk~lealf~  291 (892)
T KOG2025|consen  281 VAVKALEALFS  291 (892)
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.54  E-value=0.00052  Score=60.61  Aligned_cols=320  Identities=16%  Similarity=0.159  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHhhCHH-------HHHH-hhhHhh
Q 019679            8 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRILNPE-------LAIQ-HILPCV   74 (337)
Q Consensus         8 R~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~l~~~~~~~~~~-------~~~~-~ll~~l   74 (337)
                      .+.+.+++.+++.   .......+.+.+...+.     +.+..+-...+.++..+.+....+       .+.+ .++|.+
T Consensus        19 ~~~~L~~l~~ls~---~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l   95 (415)
T PF12460_consen   19 YERILEALAALST---SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRL   95 (415)
T ss_pred             HHHHHHHHHHHHC---ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHH
Confidence            4445566666553   22223334444444432     225667777778887776654222       2222 266666


Q ss_pred             HHhcC-----CC--cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc----------CCC--hhHHHHHHHhHHHh
Q 019679           75 KELSS-----DS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK----------DEF--PDVRLNIISKLDQV  135 (337)
Q Consensus        75 ~~l~~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------d~~--~~vr~~a~~~l~~l  135 (337)
                      .+...     +.  ++.+=..+...+..+...++.+... .++..+..++.          +..  +......+.-+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~-~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i  174 (415)
T PF12460_consen   96 FELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ-EILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAI  174 (415)
T ss_pred             HHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHccccccCCCCccccccccccccHHHHHHHH
Confidence            55432     22  2566666777777777766654432 23333333332          111  11122222223333


Q ss_pred             HhhhchhhH---HhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHH
Q 019679          136 NQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNV  210 (337)
Q Consensus       136 ~~~~~~~~~---~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l  210 (337)
                      ...+.++..   .+.++..+.... ...++..|..+++.+..++..+......+.++..+...+ .......|..++..+
T Consensus       175 l~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  254 (415)
T PF12460_consen  175 LCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEIL  254 (415)
T ss_pred             HHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHH
Confidence            333333221   123555555553 445588999999999999988766555556666666666 566778888999999


Q ss_pred             HHHHHHh--ChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc---------------ChHHHHhhHHHHHHhhc
Q 019679          211 KRLAEEF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---------------GSEITCSQLLPVVINAS  273 (337)
Q Consensus       211 ~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---------------~~~~~~~~l~~~l~~~l  273 (337)
                      ..+.+++  ..+.....++..+.+++.+  ..+...+..+++.+..-.               .+..+...++|.+.+..
T Consensus       255 ~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~  332 (415)
T PF12460_consen  255 IWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF  332 (415)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence            8888775  1122244577888888888  446677778887775331               12234567899999999


Q ss_pred             cCCChhHHHHHHHHHHHHhhhhcHHHH---HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          274 KDRVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       274 ~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      .+...+.|.+...+|..+.++.+.+.+   ...++|.|.+.+.-++.+++..+.+.+..+..-
T Consensus       333 ~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  333 KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            888888999999999999999887633   467999999988878889999999988877653

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.53  E-value=0.00012  Score=65.14  Aligned_cols=261  Identities=13%  Similarity=0.098  Sum_probs=146.1

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -...++.... .++..++.|+..+..+.+.++.-  .+..+..+..+++|.+..||..|++.|..++..-++  ....+.
T Consensus        24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kva   98 (556)
T PF05918_consen   24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVA   98 (556)
T ss_dssp             HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHH
T ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHH
Confidence            3444445554 36889999999999999887663  244567777899999999999999999999974332  346788


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh------hhHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV------GFFD  184 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~------~~~~  184 (337)
                      .++.+++..+++..+..+=++|..+.+.-.... ...++..+..- ...+..+|.-++..+..-...++.      +...
T Consensus        99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t-L~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e  176 (556)
T PF05918_consen   99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT-LTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEME  176 (556)
T ss_dssp             HHHHHHTT---HHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence            999999998888888888888877776532222 23333333321 234567898888877554444332      2344


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhc-C-------cc--hHHHHHHHHHHHH
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMIN-N-------PH--YLYRMTILQAISL  251 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~-~-------~~--~~vR~~~~~~l~~  251 (337)
                      ..++..+.+.|.|-...--......|..+- .++   ...-.+.+++.+.+... +       +.  .+...+.-.++..
T Consensus       177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk-~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~  255 (556)
T PF05918_consen  177 EFIVDEIKKVLQDVTAEEFELFMSLLKSLK-IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPF  255 (556)
T ss_dssp             HHHHHHHHHHCTT--HHHHHHHHHHHHTSG-G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhCc-cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHH
Confidence            567777778888844332223233333221 111   12224567777765542 1       11  1233334444445


Q ss_pred             hccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          252 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       252 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      ++.......|.+++..-++.-+.+-....|...++.++.++...+...
T Consensus       256 fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d  303 (556)
T PF05918_consen  256 FSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD  303 (556)
T ss_dssp             -BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T
T ss_pred             hcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc
Confidence            555555544555555555555566667888899999999999888644

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.00022  Score=64.41  Aligned_cols=295  Identities=12%  Similarity=0.108  Sum_probs=164.3

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHH-hcCCCcHHHHHHHHHHHHhcCc--------
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE-LSSDSSQHVRSALATVIMGMAP--------   98 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-l~~d~~~~vr~~a~~~l~~l~~--------   98 (337)
                      ...++|.+.+++++.+.-||+.|+-++..+-....  ........++.. +..+.++..++.|.-.|....+        
T Consensus       132 lepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~  209 (948)
T KOG1058|consen  132 LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLL  209 (948)
T ss_pred             hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHH
Confidence            45689999999999999999999998888766521  001111111111 2334444444444433332211        


Q ss_pred             -------ccChh-----------------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           99 -------ILGKD-----------------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        99 -------~~~~~-----------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                             .+++.                 ......+..+..++..+++.|+-.|..++..+...  +..+ +..-..+..
T Consensus       210 ~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~  286 (948)
T KOG1058|consen  210 SNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PTAL-KAAASTYID  286 (948)
T ss_pred             hhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHH
Confidence                   01100                 00123445555566666677776666665555433  1111 222222333


Q ss_pred             Hh-cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh
Q 019679          155 LA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM  233 (337)
Q Consensus       155 ~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~  233 (337)
                      ++ +.++-.++...+.-+..+.  .+.+...+.++--++..|..++-+||.-++...-.+......+.+...+-..+...
T Consensus       287 l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT  364 (948)
T KOG1058|consen  287 LLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT  364 (948)
T ss_pred             HHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence            32 3334445555555555554  22233445566667788999999999998887666665443333222222222222


Q ss_pred             h---cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh
Q 019679          234 I---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  310 (337)
Q Consensus       234 ~---~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  310 (337)
                      -   .+.+...|+..++.+...+-.+..  +...++|.++..++|.++.--...+..+....+.+++=. ...+-..+..
T Consensus       365 ~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr-~~ii~~l~~~  441 (948)
T KOG1058|consen  365 HNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR-ASIIEKLLET  441 (948)
T ss_pred             cccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHh
Confidence            1   235577899999999988766543  467899999999999998776666666666666655321 1222222222


Q ss_pred             hhCCCCccHHHHHHHHHHHHHH
Q 019679          311 LSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       311 l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      +-.=.+..+-..|.+.+|....
T Consensus       442 ~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  442 FPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             hhhhcccccchhHHHHHHHHHh
Confidence            3333455566666666665543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.00095  Score=62.30  Aligned_cols=322  Identities=16%  Similarity=0.166  Sum_probs=189.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---H------HHHHH----hhhHh
Q 019679            7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---P------ELAIQ----HILPC   73 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~------~~~~~----~ll~~   73 (337)
                      +|-....++..+...--|+ .|+.+++....++++++...-..++.++..+++...   .      .....    .++..
T Consensus       105 iRvql~~~l~~Ii~~D~p~-~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~  183 (1010)
T KOG1991|consen  105 IRVQLTACLNTIIKADYPE-QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQI  183 (1010)
T ss_pred             HHHHHHHHHHHHHhcCCcc-cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence            4444455554555444443 368999999999999999999999999999987643   1      11223    33444


Q ss_pred             hHHhcCCCcH---HHHHHHHHHHHhcCc-ccChhhH----HhhhHHHHHHhhcC-----------------CChhHHHHH
Q 019679           74 VKELSSDSSQ---HVRSALATVIMGMAP-ILGKDAT----IEQLLPIFLSLLKD-----------------EFPDVRLNI  128 (337)
Q Consensus        74 l~~l~~d~~~---~vr~~a~~~l~~l~~-~~~~~~~----~~~l~~~l~~~l~d-----------------~~~~vr~~a  128 (337)
                      ...++.+++.   ...+..++.+...+. .++.+..    ....+..+...++-                 ....+++=|
T Consensus       184 ~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa  263 (1010)
T KOG1991|consen  184 FNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWA  263 (1010)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHH
Confidence            4455666553   344445554444332 2222222    22334444444421                 123355668


Q ss_pred             HHhHHHhHhhhchh--------hH----H----hhHHHHHHHHhc---CCch---HHHHHHHHHhhHhHhhhChhhHHHH
Q 019679          129 ISKLDQVNQVIGID--------LL----S----QSLLPAIVELAE---DRHW---RVRLAIIEYIPLLASQLGVGFFDDK  186 (337)
Q Consensus       129 ~~~l~~l~~~~~~~--------~~----~----~~llp~l~~~~~---d~~~---~vr~~~~~~l~~l~~~~~~~~~~~~  186 (337)
                      +..+.++.+..|..        .+    .    +.++..+.+.+.   ..-|   +|-.-++..+...   .........
T Consensus       264 ~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~---Vs~~~twkl  340 (1010)
T KOG1991|consen  264 LHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQC---VSHASTWKL  340 (1010)
T ss_pred             HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh---ccHHHHHHH
Confidence            88888888877631        11    1    122222222221   1111   2222222222222   222222222


Q ss_pred             HHH--------HHHHHc-----------cccchHHHH-------------HHHHHHHHHHHHhChHHHHhhHHHHHHHhh
Q 019679          187 LGA--------LCMQWL-----------KDKVYSIRD-------------AAANNVKRLAEEFGPDWAMQHIVPQVLEMI  234 (337)
Q Consensus       187 l~~--------~l~~~l-----------~d~~~~vr~-------------~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~  234 (337)
                      +.|        +++.++           +|+..-+|.             +|...+-.++..-|++ ..+.+++.+.+.+
T Consensus       341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke-~l~k~l~F~~~Il  419 (1010)
T KOG1991|consen  341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKE-TLPKILSFIVDIL  419 (1010)
T ss_pred             hhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchh-hhhhHHHHHHHHH
Confidence            222        222222           244445554             6666677776666555 3566778887777


Q ss_pred             c------C--cchHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh-hhhcHHHH
Q 019679          235 N------N--PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI-PIVDQSVV  300 (337)
Q Consensus       235 ~------~--~~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~-~~~~~~~~  300 (337)
                      .      .  .+++.+..|+..+++++..+.+.     .+...+.++++..+.++.--.|..|+..++.++ ..+..+..
T Consensus       420 ~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~  499 (1010)
T KOG1991|consen  420 TRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN  499 (1010)
T ss_pred             HhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH
Confidence            6      2  35788899999999998665432     233356778888889999999999999999998 55666655


Q ss_pred             HHhhhHHHHhhh-CCCCccHHHHHHHHHHHHHHh
Q 019679          301 EKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       301 ~~~i~~~l~~l~-~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ....+....+++ +|++-.||..|+-||..+.+.
T Consensus       500 l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~  533 (1010)
T KOG1991|consen  500 LSEALELTHNCLLNDNELPVRVEAALALQSFISN  533 (1010)
T ss_pred             HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence            566666666654 488999999999999988765

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=0.00039  Score=56.92  Aligned_cols=318  Identities=14%  Similarity=0.076  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhhHHhcCCCcH
Q 019679           11 VANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQ   83 (337)
Q Consensus        11 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l~~l~~d~~~   83 (337)
                      ++.++..+.+...+....+.+.|.+...+-.++..|+..++..++.+.+.++...+       ...++|.+...+..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            67777777777766666778999999999899999999999999999998875422       34477888888888999


Q ss_pred             HHHHHHHHHHHhcCcccChh--hHHhhhHH--HHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHH-
Q 019679           84 HVRSALATVIMGMAPILGKD--ATIEQLLP--IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVE-  154 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~--~~~~~l~~--~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~-  154 (337)
                      .|-+++.+.+..++..-..-  .+...+..  .+.++....++-+|..+..-+-.+.+. +++.    -...++..+.. 
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLeaE  221 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAE  221 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHH
Confidence            99999999998887521100  00011111  111222233444555444444444432 2221    12234444443 


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChHHH--------
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDWA--------  222 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~--------  222 (337)
                      +-..++.-|+..+++....++..-....|.  +-+++.+.+.+.  |..+--+-.+....++   .+|++.+        
T Consensus       222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgk---ffgkeaimdvseeai  298 (524)
T KOG4413|consen  222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK---FFGKEAIMDVSEEAI  298 (524)
T ss_pred             hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH---HhcchHHhhcCHHHH
Confidence            334467778888888888887654322221  234555544443  3333333334444444   3444322        


Q ss_pred             HhhH---HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH-HhhH---HHHHHhhccCCC-hhHHHHHHHHHHHHhhh
Q 019679          223 MQHI---VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT-CSQL---LPVVINASKDRV-PNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       223 ~~~l---~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l---~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~  294 (337)
                      .+.+   +.-..+++...+..-..+++.++|.++........ ...-   ...++....|.+ ..-+.+++++|..|+..
T Consensus       299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage  378 (524)
T KOG4413|consen  299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE  378 (524)
T ss_pred             HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence            2222   22223444445566778899999999766543322 2211   122223333444 44566889999999865


Q ss_pred             hcH--H---------HHHHhh------------hHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          295 VDQ--S---------VVEKSI------------RPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       295 ~~~--~---------~~~~~i------------~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      +..  +         .....+            ..++...+.-+.+++|..+.+.+..++.
T Consensus       379 lrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  379 LRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             ccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            421  1         011111            1223334556789999999988887753

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.48  E-value=2.9e-05  Score=69.04  Aligned_cols=258  Identities=13%  Similarity=0.137  Sum_probs=139.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      .+..+++.+++.|+...+.++.-.  .+.+..+..+++|++..||..|+..|..++...  ..+...+...|.++++..+
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~--~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd  109 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQ--EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDD  109 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGH--HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhccc
Confidence            357789999999999988877543  567888999999999999999999999998863  2345678888888999888


Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh--cCCChhHHHHHHHhHHHhHhhhch------hhHHhhHHHHHHH
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVE  154 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~llp~l~~  154 (337)
                      +.....+-++|..+...-+    ...+-.++....  ...+..+|..+++-+..-+..++.      +.....+...+.+
T Consensus       110 ~~E~~~v~~sL~~ll~~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikk  185 (556)
T PF05918_consen  110 PVELDAVKNSLMSLLKQDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKK  185 (556)
T ss_dssp             HHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHH
Confidence            8777777777777765222    233334444443  245678999999888654444433      2344567777777


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhh--hChhhHHHHHHHHHHHHcc-c-----cchHHHHHHHHHHHHHHHHhCh----H--
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWLK-D-----KVYSIRDAAANNVKRLAEEFGP----D--  220 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~a~~~l~~~~~~~~~----~--  220 (337)
                      .++|-...-=....+.|..+-..  ........++++++.+-.. |     .+++.-...+.++..-...+..    .  
T Consensus       186 vL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskf  265 (556)
T PF05918_consen  186 VLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKF  265 (556)
T ss_dssp             HCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHH
T ss_pred             HHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHH
Confidence            77773322111222222222221  1112234567777765442 1     1223222333333332222211    1  


Q ss_pred             --HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhc
Q 019679          221 --WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS  273 (337)
Q Consensus       221 --~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  273 (337)
                        .+...++|.+.++    ....|.-.+..+..++...+... ...++|.+...|
T Consensus       266 v~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  266 VNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             HHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             HHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence              2234444543333    34566678888888888887543 444445555444

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.48  E-value=9.8e-05  Score=62.00  Aligned_cols=205  Identities=15%  Similarity=0.149  Sum_probs=139.9

Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhh-hchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC----hhh
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGF  182 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~  182 (337)
                      .-.+..+.++....|.+++..+..+... +-.+.+   ...+++.+.+.++-....-+..++..++.++-.+|    .+.
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            3444555677889999999998776643 333333   34577777777766655677778888888887765    344


Q ss_pred             HHHHHHHHHHHHccccch--HHHHHHHHHHHHHHHHhChHH-HHh---hHHHHHH--Hhhc-C---------cchHHHHH
Q 019679          183 FDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDW-AMQ---HIVPQVL--EMIN-N---------PHYLYRMT  244 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~-~~~---~l~~~l~--~~~~-~---------~~~~vR~~  244 (337)
                      +.+.+.|.+.+.+.|...  .+|.+++.+|+.+.-..+.+. -..   ..+..+.  ...+ +         ++..+..+
T Consensus       126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a  205 (309)
T PF05004_consen  126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA  205 (309)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence            677899999999988654  678888888887665433321 112   1223111  1111 1         23578999


Q ss_pred             HHHHHHHhccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---H---HHHHhhhHHHHhhhCCC
Q 019679          245 ILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VVEKSIRPCLVELSEDP  315 (337)
Q Consensus       245 ~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~---~~~~~i~~~l~~l~~d~  315 (337)
                      |+.+.+.+...++..   ......+|.+..+|..++..||.+|-.+|+-+.+....   +   ...+.+...+..|..|.
T Consensus       206 AL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  206 ALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            999999998877753   23455789999999999999999999999999776543   1   12356777788887775

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=0.0003  Score=57.55  Aligned_cols=280  Identities=14%  Similarity=0.120  Sum_probs=166.8

Q ss_pred             HHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH-------HhhhHHHHHHhhcCCCh
Q 019679           50 AAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT-------IEQLLPIFLSLLKDEFP  122 (337)
Q Consensus        50 a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~  122 (337)
                      ++.+|..+.+..-+......++|-+...+..++..|+..+++.++.+.+.+.....       ...++|.+..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            67788888777666666677888888888888999999999999999887653221       35788999999999999


Q ss_pred             hHHHHHHHhHHHhHhhhch-hhH-HhhHHHH--HHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHc
Q 019679          123 DVRLNIISKLDQVNQVIGI-DLL-SQSLLPA--IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWL  195 (337)
Q Consensus       123 ~vr~~a~~~l~~l~~~~~~-~~~-~~~llp~--l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l  195 (337)
                      +|-++|++++..++..-.. +.+ ...++..  +.++...-+.-+|..+.+.+..+...-.   .+....-++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            9999999999988765211 111 0111111  1122222334456666666665544321   1122334666666555


Q ss_pred             cc-cchHHHHHHHHHHHHHHHHh-ChHHH-HhhHHHHHHHhhc--CcchHHHHHHHHHHHHhccccChHHH--------H
Q 019679          196 KD-KVYSIRDAAANNVKRLAEEF-GPDWA-MQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEIT--------C  262 (337)
Q Consensus       196 ~d-~~~~vr~~a~~~l~~~~~~~-~~~~~-~~~l~~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~~~--------~  262 (337)
                      +- ++.-|+..++.....+...- |.++. ...++..+++.+.  |..+--+..++.-+   ...+|++..        .
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf---gkffgkeaimdvseeaic  299 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF---GKFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH---HHHhcchHHhhcCHHHHH
Confidence            54 66678888888777776543 33433 2357777777775  23333333233333   333333221        1


Q ss_pred             h---hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhh-hHHHHhh---hCCCC-ccHHHHHHHHHHHHHH
Q 019679          263 S---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSI-RPCLVEL---SEDPD-VDVRFFATQALQSKDQ  332 (337)
Q Consensus       263 ~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i-~~~l~~l---~~d~~-~~vr~~a~~al~~l~~  332 (337)
                      .   ..++-.+.+..-.++....+|+.+++.++..........+- .|...++   ..|.+ ..-+..+..+|..++.
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            1   22333455566667788999999999998766443222222 1233332   12322 2345566777766654

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2e-05  Score=70.62  Aligned_cols=261  Identities=14%  Similarity=0.097  Sum_probs=158.1

Q ss_pred             hHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679           31 VVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  109 (337)
Q Consensus        31 l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  109 (337)
                      +...+.+.+.+ +++.||..++-.++-.+=....    ..+...++..+...+...-+++.-++|.+.-.-..    .+.
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----~ea  485 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----QEA  485 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----HHH
Confidence            55566666644 4677888887766644322222    23445556665555555556666666665432222    223


Q ss_pred             HHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          110 LPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       110 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      +.-+.....+. ...+.+...-++.-+.-  |.+   +..=|.+.+++.|.++..|.+..-.+..---.-|..    ..+
T Consensus       486 iedm~~Ya~ETQHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kai  556 (929)
T KOG2062|consen  486 IEDMLTYAQETQHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAI  556 (929)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhH
Confidence            33344444433 34455554444443322  211   234577788999999999988665443322222332    234


Q ss_pred             HHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679          189 ALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLL  266 (337)
Q Consensus       189 ~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  266 (337)
                      ..+++ ..+|.+..||.+|+.+||-++-. ++     ..+|..++++.+ -|++||..++.++|..+..-|...    -+
T Consensus       557 r~lLh~aVsD~nDDVrRaAVialGFVl~~-dp-----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai  626 (929)
T KOG2062|consen  557 RRLLHVAVSDVNDDVRRAAVIALGFVLFR-DP-----EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AI  626 (929)
T ss_pred             HHhhcccccccchHHHHHHHHHheeeEec-Ch-----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HH
Confidence            44444 47899999999999999976532 22     345566666654 469999999999999888777653    34


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCcc
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVD  318 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~  318 (337)
                      ..+..+.+|+..-||+.|+-+++.|.-...+.  .-..-+...+.+...|+..+
T Consensus       627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence            55666778999999999999988886433221  11234555566666666544

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=3.7e-05  Score=68.71  Aligned_cols=169  Identities=17%  Similarity=0.154  Sum_probs=121.5

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  106 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  106 (337)
                      ..++-++.+..+.++..||...+..+..+.+...  ++.+...+...+..-+.|..|.||..|..+|..+-..-+++.  
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee--  161 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE--  161 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc--
Confidence            4566677777788999999999999998887332  344556666777777889999999999999998875333222  


Q ss_pred             hhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHH-hhHhHhhhChhhHH
Q 019679          107 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY-IPLLASQLGVGFFD  184 (337)
Q Consensus       107 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~-l~~l~~~~~~~~~~  184 (337)
                      -.+...+..++ +|++++||++++.++..=          +.-+|.+.+...|-+..+|..+.+- +..+ ....  ...
T Consensus       162 ~~v~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~--lsi  228 (892)
T KOG2025|consen  162 CPVVNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLRS--LSI  228 (892)
T ss_pred             ccHHHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhh--hhH
Confidence            23455555555 489999999998876432          4456888888888888888777653 3344 2211  123


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHH
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKR  212 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~  212 (337)
                      ++-+..+-..+.|.+..|+.++...+..
T Consensus       229 ~krv~LlewgLnDRe~sVk~A~~d~il~  256 (892)
T KOG2025|consen  229 DKRVLLLEWGLNDREFSVKGALVDAILS  256 (892)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            4566677788999999999999988875

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.44  E-value=6.4e-07  Score=54.32  Aligned_cols=53  Identities=23%  Similarity=0.157  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHhccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          239 YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      |++|.+++.+|+.+++..+.  ..+.+.++|.+..++.|+++.||.+|+.+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            67788888888776655543  235667777888888877778888888777754

...

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.43  E-value=0.0001  Score=62.91  Aligned_cols=182  Identities=12%  Similarity=0.112  Sum_probs=129.8

Q ss_pred             HHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcC-CchHHHHHHHHHhhHhHhhhChhh--HHHH
Q 019679          113 FLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDK  186 (337)
Q Consensus       113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~  186 (337)
                      +.++-.++..+-|+.|+..+..+...-+..   .....++-.+.+.+.| ++...|..++..+..++..-....  ..+.
T Consensus       292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~  371 (516)
T KOG2956|consen  292 LKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI  371 (516)
T ss_pred             HHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH
Confidence            333333445677888888777766543332   2335677777888888 888899999999999887654433  2344


Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH---Hh
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CS  263 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~---~~  263 (337)
                      .+.-+++.-+|....|-..|......+...+.+......+.|.|..    .++..-.+++..+..+.+.+..+..   .+
T Consensus       372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~  447 (516)
T KOG2956|consen  372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLP  447 (516)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence            5556667778888877666666655555555555444556666655    3445556777888898888887754   45


Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      .+.|.+.+.....+..||+.++-||..+...+|.+
T Consensus       448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~  482 (516)
T KOG2956|consen  448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME  482 (516)
T ss_pred             hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence            78999999999999999999999999999999954

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.41  E-value=0.00016  Score=60.66  Aligned_cols=183  Identities=19%  Similarity=0.188  Sum_probs=129.0

Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhh-hChhh---HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC----hHHHHh
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQ-LGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG----PDWAMQ  224 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~-~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~  224 (337)
                      ...+.+++...|..++..+..+... +-.+.   ....+++.+.+.++-....-+..|++.++.++-.+|    .+.+.+
T Consensus        49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~  128 (309)
T PF05004_consen   49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE  128 (309)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence            3445677788999999888776543 33322   235678888888887777777788888998887766    244566


Q ss_pred             hHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHH-HHh---hHHHHHHhh--c-c---------CCChhHHHHHHH
Q 019679          225 HIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEI-TCS---QLLPVVINA--S-K---------DRVPNIKFNVAK  286 (337)
Q Consensus       225 ~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~-~~~---~l~~~l~~~--l-~---------d~~~~vr~~a~~  286 (337)
                      .+.|.+...+.|.+  ...|.+++.+++.++-..+.+. -..   ..+..++..  . .         .+++.+..+|+.
T Consensus       129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~  208 (309)
T PF05004_consen  129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS  208 (309)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence            78899999998765  5678888888887654433221 122   233322221  1 1         123579999999


Q ss_pred             HHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          287 VLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       287 ~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +++-+...++..   ...+..+|.|..++..++.+||..|-++|..+-....
T Consensus       209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999888774   3345578889999999999999999999998876543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=4.6e-05  Score=68.46  Aligned_cols=225  Identities=15%  Similarity=0.080  Sum_probs=135.3

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-  159 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~-  159 (337)
                      +++.||..+|-.+|-.+---.    ..++...+.+.+...+...-++|.-+++-+.-....    +..+.-+....++. 
T Consensus       426 ~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----~eaiedm~~Ya~ETQ  497 (929)
T KOG2062|consen  426 ENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----QEAIEDMLTYAQETQ  497 (929)
T ss_pred             cchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----HHHHHHHHHHhhhhh
Confidence            355666666665554332111    123444444444443444444444555544322111    22333333343332 


Q ss_pred             chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcc
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPH  238 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~  238 (337)
                      +.++..+..-.+..+  .+|..   +..-|.+.+++.|.++-+|....-+++.-...-|+..    .+..++.. .+|.+
T Consensus       498 Heki~RGl~vGiaL~--~ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----air~lLh~aVsD~n  568 (929)
T KOG2062|consen  498 HEKIIRGLAVGIALV--VYGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AIRRLLHVAVSDVN  568 (929)
T ss_pred             HHHHHHHHHHhHHHH--Hhhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hHHHhhcccccccc
Confidence            233333333222222  12222   3466778889999999999998877765444444443    33444444 67899


Q ss_pred             hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679          239 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  317 (337)
                      ..||.+|+.++|.+.-      -.+...|...++|.+ -++.||..++-+|+..+..-|..    ..+.+|..+..|+..
T Consensus       569 DDVrRaAVialGFVl~------~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~  638 (929)
T KOG2062|consen  569 DDVRRAAVIALGFVLF------RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVD  638 (929)
T ss_pred             hHHHHHHHHHheeeEe------cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHH
Confidence            9999999999988752      123455666666654 45899999999999998877753    556677788889999


Q ss_pred             cHHHHHHHHHHHHHH
Q 019679          318 DVRFFATQALQSKDQ  332 (337)
Q Consensus       318 ~vr~~a~~al~~l~~  332 (337)
                      -||+.|+-+++.+.-
T Consensus       639 fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  639 FVRQGALIALAMIMI  653 (929)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887643

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.0001  Score=67.41  Aligned_cols=184  Identities=15%  Similarity=0.170  Sum_probs=134.5

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      -+......+.|+..-+|.+++..+..+.+.-.+.  .....++......+.|.++.|-..+++.+..+++..+     +.
T Consensus       728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~  802 (982)
T KOG4653|consen  728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----ED  802 (982)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hh
Confidence            3556666778999999999999999999854333  4556688888999999999999999998888887654     44


Q ss_pred             hHHHHHH-hhc---CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---
Q 019679          109 LLPIFLS-LLK---DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---  179 (337)
Q Consensus       109 l~~~l~~-~l~---d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---  179 (337)
                      ++|.+.+ +.+   ...++.|..+=+++..+++..|+=  .+...++..+.....|++..-|.+++..++.+++...   
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            5565555 222   222455555557777777776642  2335677777888889988999999999999998763   


Q ss_pred             hhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChH
Q 019679          180 VGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       180 ~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      .+ +..++...+.. .-.|.+..||.+|+..+.......|.+
T Consensus       883 sd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d  923 (982)
T KOG4653|consen  883 SD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED  923 (982)
T ss_pred             hH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence            33 33333333333 345889999999999999998877744

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.34  E-value=1.4e-06  Score=52.87  Aligned_cols=53  Identities=26%  Similarity=0.230  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          278 PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       278 ~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      |.||.+|+.+|+.++...+..  .+...++|.|..+++|++++||..|+.+|+.+
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            579999999999987665543  46688999999999999999999999999864

...

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.33  E-value=0.00025  Score=60.90  Aligned_cols=329  Identities=14%  Similarity=0.154  Sum_probs=200.9

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCc---ccchHH---------HHHHhcCCChHHHHHHHHHhHHHHHHhh----------C
Q 019679            5 WRVRYMVANQLYELCEAVGPEPT---RSDVVP---------AYVRLLRDNEAEVRIAAAGKVTKICRIL----------N   62 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~---~~~l~~---------~l~~~~~d~~~~vR~~a~~~l~~~~~~~----------~   62 (337)
                      .+||..+...+....+.++....   |+-++|         .+.-.+.|+++..|..|+..+..+....          +
T Consensus        10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~   89 (728)
T KOG4535|consen   10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS   89 (728)
T ss_pred             HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence            57999999999998887765432   222332         2234568999999999999888876531          1


Q ss_pred             HHH-------HHHhhhH---hh-HHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCCChhHHHH
Q 019679           63 PEL-------AIQHILP---CV-KELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLN  127 (337)
Q Consensus        63 ~~~-------~~~~ll~---~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~  127 (337)
                      +..       +...+..   .+ ..+..+.++.+-..+++++..+....+-+..    .-++...+..+++.+++.||..
T Consensus        90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs  169 (728)
T KOG4535|consen   90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVS  169 (728)
T ss_pred             CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhH
Confidence            110       0111111   11 2233456667778889999988876653332    2456777888999999999999


Q ss_pred             HHHhHHHhHhhhch--h-----------------------hHHhhH--HHHHHHH------------------------h
Q 019679          128 IISKLDQVNQVIGI--D-----------------------LLSQSL--LPAIVEL------------------------A  156 (337)
Q Consensus       128 a~~~l~~l~~~~~~--~-----------------------~~~~~l--lp~l~~~------------------------~  156 (337)
                      ++..++.++..-.+  +                       .+ +.+  =|...+.                        .
T Consensus       170 ~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~  248 (728)
T KOG4535|consen  170 SLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWW-KKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP  248 (728)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHH-HhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence            99999888754211  1                       00 000  0000000                        0


Q ss_pred             cCCc----------------hHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679          157 EDRH----------------WRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  219 (337)
Q Consensus       157 ~d~~----------------~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  219 (337)
                      ...+                ..+|-.+++.+..++..+|.-. +.-++...+...+.|..+.+...+.+.+..++...+.
T Consensus       249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~  328 (728)
T KOG4535|consen  249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ  328 (728)
T ss_pred             CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence            1111                2367778888888888876533 4456777777888999999999999999998877653


Q ss_pred             HH----H-HhhHHHHHHHhhc---------Cc-chHHHHHHHHHHHHhccc-c-ChHHHHhhHHHHHHhhccCCC-hhHH
Q 019679          220 DW----A-MQHIVPQVLEMIN---------NP-HYLYRMTILQAISLLAPV-M-GSEITCSQLLPVVINASKDRV-PNIK  281 (337)
Q Consensus       220 ~~----~-~~~l~~~l~~~~~---------~~-~~~vR~~~~~~l~~l~~~-~-~~~~~~~~l~~~l~~~l~d~~-~~vr  281 (337)
                      +.    . .+.....+..++.         |+ ......+.+.++..+... + +-..-.....+.++....|.. ..||
T Consensus       329 ~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~  408 (728)
T KOG4535|consen  329 QYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVK  408 (728)
T ss_pred             hcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHH
Confidence            21    1 1122222333322         11 234555566666665321 1 111112356677777766554 5688


Q ss_pred             HHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          282 FNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       282 ~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      .+|+++++-..-+.+..   .+.......+..-+.|+.-++|..++.+++.+.+++
T Consensus       409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL  464 (728)
T KOG4535|consen  409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL  464 (728)
T ss_pred             HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH
Confidence            89999888776655543   334445555556667777778888888888777654

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.32  E-value=0.00017  Score=61.59  Aligned_cols=186  Identities=15%  Similarity=0.063  Sum_probs=121.1

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccChhh--
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDA--  104 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~--  104 (337)
                      +...+.+.-.++..+-|+.|...+..+.-.-+-   +++...++..+.+.+.| .+...|+.|+..|..+++.-+...  
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            334444444555667788887766655433222   23445566666677777 788889999999999887555322  


Q ss_pred             HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-
Q 019679          105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-  183 (337)
Q Consensus       105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-  183 (337)
                      ..+..+--+++.-+|..++|-..|.+....++....+..-...+-|.+..    .+...-..++..+..+.+.+..+.. 
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~  443 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELL  443 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence            12334455666667887777777766655554444433333444454443    4444555666778888888877653 


Q ss_pred             --HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          184 --DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       184 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                        .+.+.|.+++.....+..||+.|+-+|..+...+|.+
T Consensus       444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~  482 (516)
T KOG2956|consen  444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME  482 (516)
T ss_pred             HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence              4568888888888889999999999999988888744

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.00056  Score=62.73  Aligned_cols=165  Identities=19%  Similarity=0.204  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHh--CCCC-----cccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhH-HhcC
Q 019679           12 ANQLYELCEAV--GPEP-----TRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPEL---AIQHILPCVK-ELSS   79 (337)
Q Consensus        12 ~~~l~~~~~~~--~~~~-----~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~-~l~~   79 (337)
                      ++++.+++..+  |.+.     ..+.++|.+..+++++ +.++-..|+.++..+++.++...   +....+|.+. +++.
T Consensus       186 leal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~  265 (1051)
T KOG0168|consen  186 LEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT  265 (1051)
T ss_pred             HHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh
Confidence            45555555543  3322     2357999999999875 69999999999999999998762   2334666543 4555


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhc
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE  157 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~  157 (337)
                      -.--.|-+.+++++..|....+..+....-+-.++.++.=-+-.+++.|+.....+++.+..+.+  .-..+|.|..+++
T Consensus       266 IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs  345 (1051)
T KOG0168|consen  266 IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLS  345 (1051)
T ss_pred             hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh
Confidence            55556777777777777766655544433333333333211234555566666666666554432  2345555555555


Q ss_pred             CCchHHHHHHHHHhhHhHh
Q 019679          158 DRHWRVRLAIIEYIPLLAS  176 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~  176 (337)
                      ..+.++-..++-++..++.
T Consensus       346 ~~D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  346 YQDKKPIESVCICLTRIAD  364 (1051)
T ss_pred             hccchhHHHHHHHHHHHHH
Confidence            4444444444444444433

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.0034  Score=58.76  Aligned_cols=147  Identities=16%  Similarity=0.106  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHhcC------C--ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhH
Q 019679            9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------D--NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVK   75 (337)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d--~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~   75 (337)
                      -++...+..+++.-|++.. +.+++++.+.+.      .  .++.-+..|+.+++.+++.+.++     .+...+.+.+.
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf  468 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF  468 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence            4566667777776666663 556666666665      2  35677888999999999877654     33444566666


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcC-cccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMA-PILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPA  151 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~  151 (337)
                      ...+++....|.-||+.++.++ ..+.........+....+.+. |++--||..|+-++..+......  +.+.+.+-|.
T Consensus       469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~  548 (1010)
T KOG1991|consen  469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI  548 (1010)
T ss_pred             HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence            7889999999999999999999 455555555667777777777 88889999999999988876542  2344444444


Q ss_pred             HHHHh
Q 019679          152 IVELA  156 (337)
Q Consensus       152 l~~~~  156 (337)
                      +.+++
T Consensus       549 mq~lL  553 (1010)
T KOG1991|consen  549 MQELL  553 (1010)
T ss_pred             HHHHH
Confidence            44443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=98.29  E-value=0.002  Score=65.60  Aligned_cols=306  Identities=10%  Similarity=0.052  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHHHHhCCCC--ccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HH-----HHHHhhhHhhH
Q 019679            8 RYMVANQLYELCEAVGPEP--TRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PE-----LAIQHILPCVK   75 (337)
Q Consensus         8 R~~~~~~l~~~~~~~~~~~--~~~----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~-----~~~~~ll~~l~   75 (337)
                      |....+.+.+++.+-....  .|.    .+-+++.+...+++..++..|+..|.+++-.+- .+     .+.+.++..+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            5566777777776655432  233    356666666566778899999998888776432 22     23344555444


Q ss_pred             H-hcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-c---h--hhHHh
Q 019679           76 E-LSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-G---I--DLLSQ  146 (337)
Q Consensus        76 ~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~---~--~~~~~  146 (337)
                      . +....+..||...++++..+....+.....  +.++.++.....++++.+-..+.+.+..+.+.. +   .  .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            4 345667799999999999988765543322  456677777777888888888999888776542 1   1  11223


Q ss_pred             hHHHHHHHHhcCC-chHHHHHHHHHhhHhHhhh-----------------------------------ChhhHHHHHHHH
Q 019679          147 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLGAL  190 (337)
Q Consensus       147 ~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~~~  190 (337)
                      .++..+.++.+.. +..+-..++..+..++..+                                   +.+......+|+
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4555555555432 2333333444444332211                                   111112334555


Q ss_pred             HHH---HccccchHHHHHHHHHHHHHHHHhChHH-------H-HhhHHHHHHHhhc----------------------Cc
Q 019679          191 CMQ---WLKDKVYSIRDAAANNVKRLAEEFGPDW-------A-MQHIVPQVLEMIN----------------------NP  237 (337)
Q Consensus       191 l~~---~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------~-~~~l~~~l~~~~~----------------------~~  237 (337)
                      +..   ...|+..+||..|+..|=++....|...       + ...++|.+..+-.                      +.
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            544   4679999999999999988887776531       2 3345555433211                      11


Q ss_pred             chHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHH
Q 019679          238 HYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLV  309 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~  309 (337)
                      +.+...+...++..+...+..-     ...+.++..+..+...++..+-+.+..+|..+....|..   .....+...+.
T Consensus      1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076       1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            1234677777777776554432     234455566666778888888888999999998766643   33455666666


Q ss_pred             hhhC
Q 019679          310 ELSE  313 (337)
Q Consensus       310 ~l~~  313 (337)
                      ++++
T Consensus      1509 ~lf~ 1512 (1780)
T PLN03076       1509 EAAN 1512 (1780)
T ss_pred             HHHH
Confidence            5544

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=98.29  E-value=0.00022  Score=66.71  Aligned_cols=217  Identities=16%  Similarity=0.181  Sum_probs=117.3

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-  157 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-  157 (337)
                      ..+..|.....++...+.    ..    -+..+.+++....  ..-....+..+........     ..++..+..+++ 
T Consensus       376 ~~~~~r~~~lDal~~aGT----~~----av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~  442 (618)
T PF01347_consen  376 KKEQARKIFLDALPQAGT----NP----AVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT-----EELLKELFELAKS  442 (618)
T ss_dssp             --HHHHHHHHHHHHHH-S----HH----HHHHHHHHHHTT-S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-
T ss_pred             cHHHHHHHHHHHHHHcCC----HH----HHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhC
Confidence            466788888888888775    22    2233444443322  2222223333333332222     233344444433 


Q ss_pred             ---CCchHHHHHHHHHhhHhHhhhChh------------h----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC
Q 019679          158 ---DRHWRVRLAIIEYIPLLASQLGVG------------F----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  218 (337)
Q Consensus       158 ---d~~~~vr~~~~~~l~~l~~~~~~~------------~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  218 (337)
                         ..+..++..++-.++.++......            .    +.+.+.+.+.......+...+..++++||.+..   
T Consensus       443 ~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~---  519 (618)
T PF01347_consen  443 PKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH---  519 (618)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT----
T ss_pred             ccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC---
Confidence               345678888888888887665322            1    223344444444445666888888999987642   


Q ss_pred             hHHHHhhHHHHHHHhhcCc---chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679          219 PDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  295 (337)
Q Consensus       219 ~~~~~~~l~~~l~~~~~~~---~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~  295 (337)
                           ...++.+...+.+.   +..+|.+|+.++..++... ++...+.++|++.+  .....+||.+|...|-.--   
T Consensus       520 -----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n--~~e~~EvRiaA~~~lm~~~---  588 (618)
T PF01347_consen  520 -----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMN--TTEDPEVRIAAYLILMRCN---  588 (618)
T ss_dssp             -----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH---TTS-HHHHHHHHHHHHHT----
T ss_pred             -----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcC---
Confidence                 23666666666665   6889999999999876544 33355566666666  4555789999875554321   


Q ss_pred             cHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679          296 DQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  327 (337)
Q Consensus       296 ~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al  327 (337)
                      ++.   ..+......+-.|++..|+..+...|
T Consensus       589 P~~---~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  589 PSP---SVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             --H---HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             CCH---HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            222   22333334456788999988776655

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.0011  Score=59.65  Aligned_cols=146  Identities=14%  Similarity=0.132  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh-
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-  217 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~-  217 (337)
                      ...-|.+...++-++..||..++..+-.+-...|++..       .++-...+..+|+|+-+.||..|...+.++...| 
T Consensus       173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW  252 (1005)
T KOG1949|consen  173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW  252 (1005)
T ss_pred             HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            34556777788899999999999998887776665442       2334456678899999999999988877665443 


Q ss_pred             ---ChHHHHhhHHHHH-HHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          218 ---GPDWAMQHIVPQV-LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       218 ---~~~~~~~~l~~~l-~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                         .+. +...++..+ -++..|....||.+....+..+...-..-....+++|.+-..+.|.+..||.++...|..+-
T Consensus       253 e~iP~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  253 EMIPPT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HHcCHH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence               222 223344443 34445666899999999998887665555667899999999999999999999999888774

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=98.25  E-value=0.00026  Score=59.55  Aligned_cols=165  Identities=16%  Similarity=0.205  Sum_probs=107.4

Q ss_pred             chHH-HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh----
Q 019679           30 DVVP-AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----  104 (337)
Q Consensus        30 ~l~~-~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----  104 (337)
                      .++. .+...+.++++.+|+.|+.++|-++-. +++.- ...++.+.+.++..+..||..+++++..+....|.+.    
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~  103 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLL-DKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE  103 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh-ChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence            4443 333677889999999999999977654 33332 3345555555566689999999999999887776432    


Q ss_pred             -------HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh--hch-hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679          105 -------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  174 (337)
Q Consensus       105 -------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  174 (337)
                             ....+...+.+.+.+.++++|..+++++..+.-.  +.. ..+...++-....-...++.+.|+...-.+..+
T Consensus       104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y  183 (298)
T PF12719_consen  104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY  183 (298)
T ss_pred             hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence                   1246888999999999999999999999987543  223 222233333333333445567887777777766


Q ss_pred             HhhhC--hhhHHHHHHHHHHHHcc
Q 019679          175 ASQLG--VGFFDDKLGALCMQWLK  196 (337)
Q Consensus       175 ~~~~~--~~~~~~~l~~~l~~~l~  196 (337)
                      +..-.  ...+.+-++|.+..+.+
T Consensus       184 ~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  184 ASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHh
Confidence            65432  22334445555554443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.23  E-value=9.9e-05  Score=67.98  Aligned_cols=147  Identities=15%  Similarity=0.130  Sum_probs=120.6

Q ss_pred             HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--
Q 019679          145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--  219 (337)
Q Consensus       145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  219 (337)
                      ...+.|.+.+.+.......|...+..++.+....+....   .+.++|.+++.|.=++..||-.+.+++..+....+.  
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            356888888888866667899999999998888766543   467999999999999999999999999988776543  


Q ss_pred             HHHHhhHHHHHHHhhcCcc---hHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          220 DWAMQHIVPQVLEMINNPH---YLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       220 ~~~~~~l~~~l~~~~~~~~---~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      ..+...++|.++.+-.|.+   ..||..|+++++.+.+....   -.|.+.++..+.+.|.|+-.-||..|+++=+.+
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            3346789999999888766   67999999999999885543   346788999999999999999999999875554

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=98.22  E-value=0.00051  Score=57.77  Aligned_cols=228  Identities=16%  Similarity=0.160  Sum_probs=126.3

Q ss_pred             hhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHH
Q 019679           73 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  152 (337)
Q Consensus        73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l  152 (337)
                      .+...++.+++.||..+++++|-.+-.-. + .....++.+...++..++.||..|++++-.+....|.+.+...-    
T Consensus        31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~-~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~----  104 (298)
T PF12719_consen   31 LILPAVQSSDPAVRELALKCLGLCCLLDK-E-LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES----  104 (298)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhCh-H-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh----
Confidence            33457788888999999999988775332 2 33455677777776668899999999998888877754331100    


Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  232 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  232 (337)
                           +.+                   .......+..++.+.+.+.++++|..++..+.++.-.-... ..+.++..+.-
T Consensus       105 -----~~~-------------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~-~~~~vL~~Lll  159 (298)
T PF12719_consen  105 -----DND-------------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRIS-DPPKVLSRLLL  159 (298)
T ss_pred             -----ccC-------------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence                 000                   11223456667777777777777777777777765321000 00223333222


Q ss_pred             hhc----CcchHHHHHHHHHHHHhccccC--hHHHHhhHHHHHHhhccCCCh----hHHHHHHHHHHHHhhhhcH-----
Q 019679          233 MIN----NPHYLYRMTILQAISLLAPVMG--SEITCSQLLPVVINASKDRVP----NIKFNVAKVLQSLIPIVDQ-----  297 (337)
Q Consensus       233 ~~~----~~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~~~-----  297 (337)
                      .+-    ..+.+.|+..-.++...+..-.  .+.+...++|.+..+...+..    .-.....+....+.....+     
T Consensus       160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~  239 (298)
T PF12719_consen  160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVK  239 (298)
T ss_pred             HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccC
Confidence            222    2346777777777777665433  233444566666655533321    1111122222222222111     


Q ss_pred             ---------HHHHHhhhHHHHhhhCCCCcc--HHHHHHHHHHHHH
Q 019679          298 ---------SVVEKSIRPCLVELSEDPDVD--VRFFATQALQSKD  331 (337)
Q Consensus       298 ---------~~~~~~i~~~l~~l~~d~~~~--vr~~a~~al~~l~  331 (337)
                               ..........+..+..|+..+  .+..-+++|+.+.
T Consensus       240 ~~~~~~~~~~~h~~La~~il~~i~~~~~~~~~~~k~~~~~L~~L~  284 (298)
T PF12719_consen  240 ESNQEIQNESVHVDLAIDILNEILSDPEKEKEERKALCKALSKLE  284 (298)
T ss_pred             ccccccccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccc
Confidence                     122234455555666665554  7777777777654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.22  E-value=0.00028  Score=60.64  Aligned_cols=290  Identities=11%  Similarity=0.061  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHh-----hhHh---
Q 019679            7 VRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPC---   73 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~-----ll~~---   73 (337)
                      +|.++.+.+..++++++--. ..-++...+...+.+..+.+...+...+.+++.....+    .....     +...   
T Consensus       271 ~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~  350 (728)
T KOG4535|consen  271 MRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLN  350 (728)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHcc
Confidence            89999999999999988633 34577888888889999999999999998887655422    11111     1100   


Q ss_pred             --hHHhcCC-CcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchh---hH
Q 019679           74 --VKELSSD-SSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGID---LL  144 (337)
Q Consensus        74 --l~~l~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~  144 (337)
                        .....-| ..+....+.|..+.++....-  -....+...+.+..-+.|.. .-||.+|+..++.++-+-+-.   .+
T Consensus       351 ~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~f  430 (728)
T KOG4535|consen  351 GPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIF  430 (728)
T ss_pred             CCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHH
Confidence              0111122 334566778888888775221  11123467788888887654 457888888877665443322   12


Q ss_pred             HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-----ChhhHHHHHHHHHH----HH---ccccchHHHHHHHHHHHH
Q 019679          145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-----GVGFFDDKLGALCM----QW---LKDKVYSIRDAAANNVKR  212 (337)
Q Consensus       145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~~~~~~l~~~l~----~~---l~d~~~~vr~~a~~~l~~  212 (337)
                      .......+...+.|+.-.+|.-++-.++.|...+     .+....+.+...++    ..   ....+..||..++++|+.
T Consensus       431 v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgn  510 (728)
T KOG4535|consen  431 VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGN  510 (728)
T ss_pred             HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhh
Confidence            2344555566677888888888888888876654     11222233332222    11   123567899999999999


Q ss_pred             HHHHhChH------HHHh-hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC----hHHHHhhHHHHHHhhccC-CChhH
Q 019679          213 LAEEFGPD------WAMQ-HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----SEITCSQLLPVVINASKD-RVPNI  280 (337)
Q Consensus       213 ~~~~~~~~------~~~~-~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d-~~~~v  280 (337)
                      +.+.+.+-      ...+ .....+....-..+..||=.++.+++.+...-.    .......+++.+..++.| .+..|
T Consensus       511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  511 LLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence            88876421      0111 111112222223457799999999999865432    233456788888888754 56799


Q ss_pred             HHHHHHHHHHHhhhhc
Q 019679          281 KFNVAKVLQSLIPIVD  296 (337)
Q Consensus       281 r~~a~~~l~~i~~~~~  296 (337)
                      |.+|+.+|..-++-.+
T Consensus       591 Ri~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  591 RIRAAAALSVPGKREQ  606 (728)
T ss_pred             eehhhhhhcCCCCccc
Confidence            9999999888775443

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=98.22  E-value=0.00076  Score=58.08  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=90.1

Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc------CcchHHHHHHHHHHHHhccccC---------------
Q 019679          199 VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG---------------  257 (337)
Q Consensus       199 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~vR~~~~~~l~~l~~~~~---------------  257 (337)
                      ....|.+|...+..+++.++.. ..+.+...+..+++      ..+|+.+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~-v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQ-VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            4567889999999998887543 33334444444444      3569999999999999964431               


Q ss_pred             hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679          258 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  327 (337)
Q Consensus       258 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al  327 (337)
                      .+++..+++|-+. .-.+..+-+|..|++.+..+...++.+. ...++|.+..++.+++.-|+..|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2355677888777 3345668899999999999999988764 467999999999999999999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.21  E-value=0.0049  Score=60.31  Aligned_cols=143  Identities=16%  Similarity=0.102  Sum_probs=106.5

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  109 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  109 (337)
                      ..+..+...+..+...+|..|+.++..+.+.-+.-.....+...+..-+.|++..||.+|++.+|.+.-..+  ....+.
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qy  893 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQY  893 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHH
Confidence            467777788888899999999999999988643322333455566677899999999999999999876443  234566


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  174 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  174 (337)
                      ...+.+-+.|..-.||+-+++-+..++...+.-.....+...+...++|+...++..+.+.+..+
T Consensus       894 Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  894 YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            77788888999999999999999999877543223345555566666777777777776665443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.20  E-value=0.0015  Score=59.07  Aligned_cols=168  Identities=14%  Similarity=0.148  Sum_probs=107.4

Q ss_pred             chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcccc--chHHHHHHHHHH---HHHHHHhChHHH---HhhHHHHHH
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVL  231 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~~---~~~l~~~l~  231 (337)
                      ++.+|.-.+..+..   ........+..+.++...+..+  +..+|..++..+   ......++...+   .+.+....+
T Consensus       296 ~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~  372 (501)
T PF13001_consen  296 SPRLQEKILSLLSK---SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW  372 (501)
T ss_pred             CHHHHHHHHHHHHH---hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence            34455554444333   3222223356777777777777  778888998888   777776655422   233333344


Q ss_pred             Hhhc--------CcchHHHHHHHHHHHHhccccChHHH-HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH--
Q 019679          232 EMIN--------NPHYLYRMTILQAISLLAPVMGSEIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV--  300 (337)
Q Consensus       232 ~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~--  300 (337)
                      ..+.        ..+...|..+.+++|.++.....-+. .-.++..++..+.++.+++|.+.-.+|+.+..++....-  
T Consensus       373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~  452 (501)
T PF13001_consen  373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDE  452 (501)
T ss_pred             cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccch
Confidence            4442        23477999999999999877654321 235777788888999999999999999999988764211  


Q ss_pred             ----HHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          301 ----EKSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       301 ----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                          .....-.+.....+....+|+.|++..+.+
T Consensus       453 ~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~  486 (501)
T PF13001_consen  453 DEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC  486 (501)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence                111222222334455677899998877654

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.20  E-value=0.0016  Score=53.28  Aligned_cols=232  Identities=13%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh--chhhHHhh
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQS  147 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~  147 (337)
                      +...++++++.+|..++..|..+...++++..    ...++..+.+.+.|  ...-..++.++..+.+.-  +.+. ...
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~~~~~~~~-~~~   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKMKNFSPES-AVK   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence            34456677777777777777777666654322    23455556666633  333444477777776432  1222 233


Q ss_pred             HHHHHHHHh--cCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHH
Q 019679          148 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA  222 (337)
Q Consensus       148 llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~  222 (337)
                      ++..+.+-.  +.-....|..+.+.+..+........  ..+.++..+.+.+.. .+|.---.+.+.+..+...+.....
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~  160 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF  160 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence            444333322  22334688888888888877653322  233455666665543 4566556667777777777765444


Q ss_pred             HhhHHHHHHHhhc--------CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          223 MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       223 ~~~l~~~l~~~~~--------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                      .+.++..+.-.+-        |+....|......+....  .....|.+..+|.++.-|....+.++.-+.++|......
T Consensus       161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl--~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCL--SSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHh--cCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            5555555444331        222222222222222211  123457789999999999999999999999999999999


Q ss_pred             hcHHHHHHhhhHHHHh
Q 019679          295 VDQSVVEKSIRPCLVE  310 (337)
Q Consensus       295 ~~~~~~~~~i~~~l~~  310 (337)
                      +|...+..+..+....
T Consensus       239 y~~~~~~~~~~~iw~~  254 (262)
T PF14500_consen  239 YGADSLSPHWSTIWNA  254 (262)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9987665555544433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.19  E-value=2.9e-06  Score=44.36  Aligned_cols=29  Identities=24%  Similarity=0.518  Sum_probs=16.8

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                      ++|.++++++|++++||.+|+.+|+.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35566666666666666666666666554

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=98.16  E-value=0.00066  Score=62.85  Aligned_cols=218  Identities=16%  Similarity=0.176  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC--
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--  158 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d--  158 (337)
                      +..|.....++...+.        ..-+..+.+.+....  +.....++..+...+....     +.++..+.+++++  
T Consensus       340 ~~~r~~~~Dal~~~GT--------~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~  406 (574)
T smart00638      340 KKARRIFLDAVAQAGT--------PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE  406 (574)
T ss_pred             HHHHHHHHHHHHhcCC--------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence            6778888888777775        222344444444332  2233334444444433322     2344444455443  


Q ss_pred             --CchHHHHHHHHHhhHhHhhhChh------hHHHHHHHHHHHHc----cccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          159 --RHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWL----KDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       159 --~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                        ++..+|..+.-.++.++...+..      ...+.+++.+...+    ++.+...+...+++||.++    .......+
T Consensus       407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~~~~i~~l  482 (574)
T smart00638      407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG----HPSSIKVL  482 (574)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC----ChhHHHHH
Confidence              45679999999998888754321      12244555555444    4455666778888888654    33223334


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhH
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP  306 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~  306 (337)
                      .|.+. --.+.+..+|.+|+.++..++..... ...+.+++++.+  .+..++||.+|...|-.--   ++......+. 
T Consensus       483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~---P~~~~l~~ia-  554 (574)
T smart00638      483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLMETK---PSVALLQRIA-  554 (574)
T ss_pred             HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHhcC---CCHHHHHHHH-
Confidence            44433 11233578999999999988764433 355667777755  5566899998886655442   2212223333 


Q ss_pred             HHHhhhCCCCccHHHHHHHHH
Q 019679          307 CLVELSEDPDVDVRFFATQAL  327 (337)
Q Consensus       307 ~l~~l~~d~~~~vr~~a~~al  327 (337)
                        ..+..|++..|+..+...|
T Consensus       555 --~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      555 --ELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             --HHHhhcCcHHHHHHhHHhh
Confidence              3355688888887765543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.00055  Score=61.54  Aligned_cols=143  Identities=21%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             hHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhh----HHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---
Q 019679           71 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQL----LPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---  140 (337)
Q Consensus        71 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---  140 (337)
                      -|++...++-+|..||..|+..+-++-...+++...   +.+    ...+..+++|+.|.||..|+..+..+...+=   
T Consensus       176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            344445555666666666666666665555543321   112    2345555666666666666666555544421   


Q ss_pred             hhhHHhhHHH-HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679          141 IDLLSQSLLP-AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL  213 (337)
Q Consensus       141 ~~~~~~~llp-~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  213 (337)
                      +..+...++. .+-++..|....||.++++.+..+....-.....++++|.+-..+.|.+..||-+++..+..+
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            1111112222 222334455556666666666666555444445556666665666666666666666555554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.12  E-value=4.9e-06  Score=43.47  Aligned_cols=30  Identities=37%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI   60 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~   60 (337)
                      ++|.+.++++|++++||.+|+.+++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            456666666677777777777766666654

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.12  E-value=0.0024  Score=52.22  Aligned_cols=226  Identities=12%  Similarity=0.182  Sum_probs=143.5

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCc--ccChhhHHhh
Q 019679           35 YVRLLRDNEAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDSSQHVRSALATVIMGMAP--ILGKDATIEQ  108 (337)
Q Consensus        35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~  108 (337)
                      +-..+.++++.+|..|+..|+.+.+.++++.    -.+.+..++..-+.|.. .+..+ +.++..+..  .++.+. ...
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~~~~~~~~-~~~   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKMKNFSPES-AVK   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhCcCCChhh-HHH
Confidence            4467789999999999999999999988762    23446666665564432 33333 666666553  233222 233


Q ss_pred             hHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhChhhH
Q 019679          109 LLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFF  183 (337)
Q Consensus       109 l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~  183 (337)
                      ++..+.+-..  .-....|..+.+-+..+.+.....  .+-+.++..+.+.+ ++++++.-..+.+.+..+...+....+
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~  160 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF  160 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence            3333333222  223578999999888887764321  12234445555444 678888888888999988888876666


Q ss_pred             HHHHHHHHHHHc--------cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679          184 DDKLGALCMQWL--------KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  255 (337)
Q Consensus       184 ~~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~  255 (337)
                      .+.+.+.+....        +|+..--|+....+|..-..  ....+.+..+|.+.+.+.+....++.-++.++......
T Consensus       161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            667777665543        23322223333333333221  22334567899999999999988999999999998888


Q ss_pred             cChHHHHhhH
Q 019679          256 MGSEITCSQL  265 (337)
Q Consensus       256 ~~~~~~~~~l  265 (337)
                      +|.+...+++
T Consensus       239 y~~~~~~~~~  248 (262)
T PF14500_consen  239 YGADSLSPHW  248 (262)
T ss_pred             CCHHHHHHHH
Confidence            8876554443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.12  E-value=0.0026  Score=62.48  Aligned_cols=324  Identities=14%  Similarity=0.070  Sum_probs=168.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCccc-----chHHHHHHhc---CCC-hHHH--HHHHHHhHHHHHH-----hhCHHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRS-----DVVPAYVRLL---RDN-EAEV--RIAAAGKVTKICR-----ILNPEL   65 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~-----~l~~~l~~~~---~d~-~~~v--R~~a~~~l~~~~~-----~~~~~~   65 (337)
                      +++-.||..++-++.++.+...|+.-..     +++.++...+   .|. +|..  +-.-++.+..+.-     .-..++
T Consensus        61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e  140 (1266)
T KOG1525|consen   61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE  140 (1266)
T ss_pred             CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence            4677899999999999999988865322     2333333222   332 3322  2222334433321     112233


Q ss_pred             HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH
Q 019679           66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  145 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  145 (337)
                      ....+...+..++.+..+.--......+..+....  +....+++.+++.-+-.+.++....|...-..++..++.. +.
T Consensus       141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~-~~  217 (1266)
T KOG1525|consen  141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN-LE  217 (1266)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh-hc
Confidence            44455555555665544422222222222222211  1123455555555444444555555554444444443321 11


Q ss_pred             hhHHHHHHHHh-cC--CchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH
Q 019679          146 QSLLPAIVELA-ED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  222 (337)
Q Consensus       146 ~~llp~l~~~~-~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  222 (337)
                      ..+-..+.... .+  ....++.-..+.+-.+......  ..-.++|.+..-|..++..+|..|...+|.+....+....
T Consensus       218 ~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~  295 (1266)
T KOG1525|consen  218 DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS  295 (1266)
T ss_pred             hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc
Confidence            11222222211 11  1222333334444433332211  2345888888888899999999999999999765543322


Q ss_pred             --HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh-hhcHHH
Q 019679          223 --MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSV  299 (337)
Q Consensus       223 --~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~-~~~~~~  299 (337)
                        .+.++..++.-+.|.+..||..+++.....-.......-...+.-.+..  .|.++.+|.+....+..... .+.-..
T Consensus       296 ~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~--~~~D~~~rir~~v~i~~~~v~~~~l~~  373 (1266)
T KOG1525|consen  296 ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRE--RDLDEDVRVRTQVVIVACDVMKFKLVY  373 (1266)
T ss_pred             ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHh--hcCChhhhheeeEEEEEeehhHhhhhh
Confidence              3457777888888999999999998888764332221112223333333  34444555443322222210 111112


Q ss_pred             HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          300 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       300 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ... ++..+.+-+.|+.++||..|+..|..+-..
T Consensus       374 ~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  374 IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            222 555666678899999999999999887663

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.11  E-value=0.00042  Score=64.93  Aligned_cols=210  Identities=14%  Similarity=0.194  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcC
Q 019679           85 VRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED  158 (337)
Q Consensus        85 vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d  158 (337)
                      -|.=|+..|+.+...-+   .-...-.|.|+++++++.+-.+.|-..+--...+...-.   .+-+.+.....+.+.+.+
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            34445556665544221   111123566777777777766766655544444433211   111111000111111111


Q ss_pred             ---CchHHHHHHHHHhhHhHhhh--Ch-hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChH-H--HHhhHHH
Q 019679          159 ---RHWRVRLAIIEYIPLLASQL--GV-GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD-W--AMQHIVP  228 (337)
Q Consensus       159 ---~~~~vr~~~~~~l~~l~~~~--~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~-~--~~~~l~~  228 (337)
                         -+.+-|..++..|..++..+  |. ......++.++++.++|+ .+-.|+=++-+||.+-+.+... +  .......
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence               12356777777777777765  32 335567888888888885 6888888888898888776432 1  1334455


Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhcccc----ChH--------------HHHhhHHH----HHHhhccCCChhHHHHHHH
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVM----GSE--------------ITCSQLLP----VVINASKDRVPNIKFNVAK  286 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~----~~~--------------~~~~~l~~----~l~~~l~d~~~~vr~~a~~  286 (337)
                      .+...+.|+...||.+++-+++.+....    ...              ...+.+.+    .++..++|.++-||.+.+-
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v  725 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV  725 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence            6666778888889999988888886542    211              00122333    6777889999999999999


Q ss_pred             HHHHHhhh
Q 019679          287 VLQSLIPI  294 (337)
Q Consensus       287 ~l~~i~~~  294 (337)
                      +|..++-.
T Consensus       726 ~ls~~~~g  733 (1387)
T KOG1517|consen  726 ALSHFVVG  733 (1387)
T ss_pred             HHHHHHHh
Confidence            98888643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.09  E-value=0.0042  Score=57.75  Aligned_cols=294  Identities=15%  Similarity=0.099  Sum_probs=172.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--hhHHh
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIE  107 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~  107 (337)
                      ...+..++...+.-+| .++..|..+++....+  .....+++.+.++++..+..+...+...|.+++-....  .....
T Consensus       252 ~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~  330 (708)
T PF05804_consen  252 LKKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAES  330 (708)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            4455556655455555 6667788888875544  34566888898999999999999999999888753322  22346


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC-hh-hH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG-FF  183 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~-~~  183 (337)
                      .+++.+.+++..++..++..++..|..++-.-.  .......++|.+..++++++  .|..++..+..++..-. +. ..
T Consensus       331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~  408 (708)
T PF05804_consen  331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFA  408 (708)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHh
Confidence            799999999999999999999999988875433  23344568899999998765  45556666666654321 11 12


Q ss_pred             HHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh-HHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--h
Q 019679          184 DDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--S  258 (337)
Q Consensus       184 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~-~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~  258 (337)
                      ....+|.++..+.. ++..+...++..+..++..-.. +.+ ...-++.+.+........   ..+..+..++..-|  .
T Consensus       409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k  485 (708)
T PF05804_consen  409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLK  485 (708)
T ss_pred             hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHH
Confidence            23467777765443 4555554443333333321110 111 112344444433222222   23445566655443  2


Q ss_pred             HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh-hhcHHHH--HHhhhHHHHhhhCCC--CccHHHHHHHHHHHHH
Q 019679          259 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSVV--EKSIRPCLVELSEDP--DVDVRFFATQALQSKD  331 (337)
Q Consensus       259 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~-~~~~~~~--~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~  331 (337)
                      ..|.+.+.|++...-..++++....++.+|+++.- .++-..+  ...++|.+.+.+...  ..++...++..++.++
T Consensus       486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            23444444444333344455665555555555531 1121222  246889998877654  3467777777777665

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.08  E-value=0.0028  Score=56.67  Aligned_cols=290  Identities=15%  Similarity=0.090  Sum_probs=171.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCC----------CCcccchHH--HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-------
Q 019679            4 SWRVRYMVANQLYELCEAVGP----------EPTRSDVVP--AYVRLLRDNEAEVRIAAAGKVTKICRILNPE-------   64 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~----------~~~~~~l~~--~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-------   64 (337)
                      +..+|.++...+......+-.          ....+.+.+  .+.++..|++..-|-.++.++..+...--.+       
T Consensus       194 s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~  273 (678)
T KOG1293|consen  194 SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWF  273 (678)
T ss_pred             hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccce
Confidence            456777777777732222211          011223455  6678888999999988888888776643111       


Q ss_pred             ---HH-HHhhh-HhhHHhcCCCcHHHHHHHHHHHHhcC---cccChhhHHhhhHHHHHHhh------cCCChhHHHHHHH
Q 019679           65 ---LA-IQHIL-PCVKELSSDSSQHVRSALATVIMGMA---PILGKDATIEQLLPIFLSLL------KDEFPDVRLNIIS  130 (337)
Q Consensus        65 ---~~-~~~ll-~~l~~l~~d~~~~vr~~a~~~l~~l~---~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~  130 (337)
                         .. .+++. .....+..|+-+..-..++...+..+   +............+...+++      ....+..|.-++.
T Consensus       274 ~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~  353 (678)
T KOG1293|consen  274 IFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLN  353 (678)
T ss_pred             eeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhh
Confidence               00 01111 11223455665533333333333333   22222222222333333322      3345666655554


Q ss_pred             hHHHhHhh---hch----hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh---ChhhHHHHHHHHHHHHccccch
Q 019679          131 KLDQVNQV---IGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVY  200 (337)
Q Consensus       131 ~l~~l~~~---~~~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~  200 (337)
                      ..-...+.   .+.    +.........+......++...+.+++.++..++...   ....-..++...+++++.|++.
T Consensus       354 e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~  433 (678)
T KOG1293|consen  354 ETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI  433 (678)
T ss_pred             hhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch
Confidence            43222211   111    1111122222333334456667888877777665543   2223334577777888899999


Q ss_pred             HHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhc
Q 019679          201 SIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINAS  273 (337)
Q Consensus       201 ~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l  273 (337)
                      .|...+..++..+.-.|++   ..+....+..+.++..++...+|..+.+.+..+.-....+.    ....-...+..+.
T Consensus       434 ~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~  513 (678)
T KOG1293|consen  434 MIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI  513 (678)
T ss_pred             hHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH
Confidence            9999999999999877764   34566788899999999999999999999999886655332    2233455677888


Q ss_pred             cCCChhHHHHHHHHHHHHhh
Q 019679          274 KDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       274 ~d~~~~vr~~a~~~l~~i~~  293 (337)
                      +|+.+.|+..+.+.|..+.-
T Consensus       514 nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  514 NDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             hCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999998853

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.06  E-value=0.0068  Score=53.80  Aligned_cols=172  Identities=16%  Similarity=0.132  Sum_probs=123.0

Q ss_pred             HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      ..+..+..+++....++..||..+++-+..+...+++  +.+.+.++..+.+.+-|..+.||..++.++..+-+.-+.+.
T Consensus        88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            3455566666777788899999999999999999987  67778888888888899999999999999988876555443


Q ss_pred             HHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH-HHHHHHHHHHhccccChHH
Q 019679          183 FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLAPVMGSEI  260 (337)
Q Consensus       183 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v-R~~~~~~l~~l~~~~~~~~  260 (337)
                        ..+...+...+ .|++.+||..|+..+..     +     ..-.|.+++-..|-+... |....+++..++...... 
T Consensus       168 --n~~~n~l~~~vqnDPS~EVRr~allni~v-----d-----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-  234 (885)
T COG5218         168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV-----D-----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-  234 (885)
T ss_pred             --HHHHHHHHHHHhcCcHHHHHHHHHHHeee-----C-----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence              12233333333 68999999998776641     1     235678888888877544 455677888776433221 


Q ss_pred             HHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679          261 TCSQLLPVVINASKDRVPNIKFNVAKVLQS  290 (337)
Q Consensus       261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  290 (337)
                      ...+++ .+--.+.|....||.++..++..
T Consensus       235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence            122343 56667889999999988877643

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.0093  Score=54.05  Aligned_cols=322  Identities=15%  Similarity=0.164  Sum_probs=178.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH---------------
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA---------------   66 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~---------------   66 (337)
                      +...-||+.++-++-.+-+..+.-....+-...+..++.|.+..|-.++...+..+++..+++--               
T Consensus       159 ~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~  238 (938)
T KOG1077|consen  159 SSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVV  238 (938)
T ss_pred             cchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHh
Confidence            45667999999999988887655443335566777888888877777777777777776554310               


Q ss_pred             -------------------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC---hh---------------------
Q 019679           67 -------------------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KD---------------------  103 (337)
Q Consensus        67 -------------------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~---------------------  103 (337)
                                         .-.++..+..+-.-+++.+|....+++..+.....   +.                     
T Consensus       239 ~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~  318 (938)
T KOG1077|consen  239 VVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAI  318 (938)
T ss_pred             hcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHH
Confidence                               01112222223334556677777777766654322   00                     


Q ss_pred             ------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhH
Q 019679          104 ------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA  175 (337)
Q Consensus       104 ------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~  175 (337)
                            .....-+..+.+++.+.+.++|.-++.++..++..-. .+.+..+ ...+...++ +++..+|..++..+-.++
T Consensus       319 h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mc  397 (938)
T KOG1077|consen  319 HLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMC  397 (938)
T ss_pred             HcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHh
Confidence                  0011223344455556666666666666666554421 2233222 444444444 888899999998888777


Q ss_pred             hhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHh---hcCcch-----------
Q 019679          176 SQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEM---INNPHY-----------  239 (337)
Q Consensus       176 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~---~~~~~~-----------  239 (337)
                      ..-..    ..++.-+++.|...++.+|+.-+.-.+-+++.+..+  |+.+.++..+.-.   ..|.-|           
T Consensus       398 D~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNne  473 (938)
T KOG1077|consen  398 DVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNE  473 (938)
T ss_pred             chhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecch
Confidence            65433    346667777788888999998888888888877543  4444433332211   111112           


Q ss_pred             -HHHHHHHHHHHHhc------------cccChH----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          240 -LYRMTILQAISLLA------------PVMGSE----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       240 -~vR~~~~~~l~~l~------------~~~~~~----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                       -.+.++-..+..+.            .++-++          ......+..+-+-+.--++..|.-...++-.+...++
T Consensus       474 dlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P  553 (938)
T KOG1077|consen  474 DLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP  553 (938)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh
Confidence             22333332222221            111000          0011223333333333444555555555555555443


Q ss_pred             HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          297 QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       297 ~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                        .+...+...+....+-.|.++++.|++=|.-.
T Consensus       554 --Ei~~~v~~vFq~~~n~~D~ElQqRa~EYLql~  585 (938)
T KOG1077|consen  554 --EIKSNVQKVFQLYSNLIDVELQQRAVEYLQLS  585 (938)
T ss_pred             --hhhHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence              23345555555555557888888888776543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.90  E-value=0.00031  Score=66.55  Aligned_cols=149  Identities=14%  Similarity=0.168  Sum_probs=113.5

Q ss_pred             ChhhHHHHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhc
Q 019679          179 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA  253 (337)
Q Consensus       179 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~  253 (337)
                      |+......+.|++.+.++.    .+++++.+|.-+++++... +.+ +.+.-+|.+...+. .+++.+|..++.+++.++
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence            6566677899999998853    5689999999999999864 344 34556777777776 788999999999999988


Q ss_pred             cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          254 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       254 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      -.+..  +.+..-+.+...+.|+++.||..|+..|..+.-.  ...-..-.++-+..++.|++.+||..|...+..+...
T Consensus       990 v~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  990 VRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             hhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            65543  3456678899999999999999999998887531  1111123445556688999999999999777776654

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.0063  Score=60.91  Aligned_cols=285  Identities=13%  Similarity=0.166  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC----ChHHHHHHHHH--hHHHHHHh---------hCHHHHHHhhhHh
Q 019679            9 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD----NEAEVRIAAAG--KVTKICRI---------LNPELAIQHILPC   73 (337)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d----~~~~vR~~a~~--~l~~~~~~---------~~~~~~~~~ll~~   73 (337)
                      -++...++.+...+++.+. -.++..+.+.+..    ....|+..+..  ++....++         ++++.+......+
T Consensus       802 dta~~lfg~vfp~v~~k~~-~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l  880 (2067)
T KOG1822|consen  802 DTAVSLFGSVFPHVNNKIR-LSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTL  880 (2067)
T ss_pred             HHHHHHHHHhccCccHHHH-HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence            3455666666666665542 3344444444432    24455555554  44433332         3455666666677


Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhc---hhhHHhhHH
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG---IDLLSQSLL  149 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll  149 (337)
                      +...+..+++..|-.+.++++.++...+...+...+...+..-+.+. ++..|..-.-+++-+-+..|   .......-+
T Consensus       881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v  960 (2067)
T KOG1822|consen  881 IVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSV  960 (2067)
T ss_pred             HhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHH
Confidence            77788889999999999999999998887776666777777666665 45666666777777777665   333334444


Q ss_pred             HHHHHHhcCCch-HHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc-cc--cchHHHHHHHHHHH------HHHHHh
Q 019679          150 PAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KD--KVYSIRDAAANNVK------RLAEEF  217 (337)
Q Consensus       150 p~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d--~~~~vr~~a~~~l~------~~~~~~  217 (337)
                      ..+..+.+|+.. .|+..++..+..+...-++-.  +.+..+..+..++ .+  ...+|++.--+++.      .+...+
T Consensus       961 ~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittl 1040 (2067)
T KOG1822|consen  961 SILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTL 1040 (2067)
T ss_pred             HHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhc
Confidence            566677777665 899999999998888776643  2233444444444 33  33466666555555      666666


Q ss_pred             ChHH-----------HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHH
Q 019679          218 GPDW-----------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK  286 (337)
Q Consensus       218 ~~~~-----------~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  286 (337)
                      |++.           +....+-...-.+.+++.-+..+++.++.++.-.-....-.+.+++.+...+....--.|.+.+.
T Consensus      1041 gpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~ 1120 (2067)
T KOG1822|consen 1041 GPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFS 1120 (2067)
T ss_pred             ccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHh
Confidence            5531           11222223333334456778888888888875444343345578888888888888888888898


Q ss_pred             HHHHHhhh
Q 019679          287 VLQSLIPI  294 (337)
Q Consensus       287 ~l~~i~~~  294 (337)
                      ++.+++..
T Consensus      1121 clrql~~R 1128 (2067)
T KOG1822|consen 1121 CLRQLVQR 1128 (2067)
T ss_pred             hhhHHhHH
Confidence            88888754

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.00071  Score=54.97  Aligned_cols=176  Identities=15%  Similarity=0.130  Sum_probs=125.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH-
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI-  106 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-  106 (337)
                      ..+......+.+.+|+....++..+..+..+.+..  ...+.++..+.+-+++....|-++|+.+++.+.+.++..... 
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667778899999999999999888876643  233445555666777888899999999999998877654322 


Q ss_pred             -hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---
Q 019679          107 -EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---  182 (337)
Q Consensus       107 -~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---  182 (337)
                       +.++-.+..--.+.+..||..|-++|..++....+    ..+++.+.....+.++++|..+..++......+|...   
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence             23333333333455678999999999999998876    4566777777888899999999999888887776332   


Q ss_pred             -HHHHHHHHHHHHccccchHHHHHHHHH
Q 019679          183 -FDDKLGALCMQWLKDKVYSIRDAAANN  209 (337)
Q Consensus       183 -~~~~l~~~l~~~l~d~~~~vr~~a~~~  209 (337)
                       +...+.+.+-+-+.|.-+.+|++|=..
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~  271 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAARFV  271 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccchhHH
Confidence             222344555555667766666655333

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.86  E-value=0.00059  Score=64.78  Aligned_cols=177  Identities=20%  Similarity=0.229  Sum_probs=127.9

Q ss_pred             HHHHHHHHH---HhCCCCcccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcH
Q 019679           12 ANQLYELCE---AVGPEPTRSDVVPAYVRLLRD----NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQ   83 (337)
Q Consensus        12 ~~~l~~~~~---~~~~~~~~~~l~~~l~~~~~d----~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~   83 (337)
                      ++.+.-++.   -.|++.....+.|++.+.+..    .+|+++.+|.-+|+++.-.  ...+-..-+|.+...++ .++|
T Consensus       898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i--Sa~fces~l~llftimeksp~p  975 (1251)
T KOG0414|consen  898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI--SAEFCESHLPLLFTIMEKSPSP  975 (1251)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCCc
Confidence            344444443   235555667899999999943    5799999999999988542  22333455677776665 8999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH-HhhHHHHHHHHhcCCchH
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWR  162 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~llp~l~~~~~d~~~~  162 (337)
                      .+|..+.-++|.++-.++.  ..+..-+.+...+.|+++.||+.|+..+..+.-.   +.+ .+..++.+...+.|++.+
T Consensus       976 ~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiKVKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen  976 RIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIKVKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred             eeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhHhcccHHHHHHHhcCCcHH
Confidence            9999999999999876663  3456678899999999999999999999877543   111 245667777788999999


Q ss_pred             HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcccc
Q 019679          163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK  198 (337)
Q Consensus       163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  198 (337)
                      +|..+=..+..++..-..  .+ .++|-++..|+|.
T Consensus      1051 IsdlAk~FF~Els~k~n~--iy-nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKGNT--IY-NLLPDILSRLSNG 1083 (1251)
T ss_pred             HHHHHHHHHHHhhhcccc--hh-hhchHHHHhhccC
Confidence            999888777777765422  12 3666666666665

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.015  Score=58.36  Aligned_cols=284  Identities=17%  Similarity=0.167  Sum_probs=170.6

Q ss_pred             HHHHHHHHhHHHHHHhhCHHHH---HHhhhHhhHHhcCCCcHHHHHHHHH--HHH----hcC---c--ccChhhHHhhhH
Q 019679           45 EVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALAT--VIM----GMA---P--ILGKDATIEQLL  110 (337)
Q Consensus        45 ~vR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~l~~d~~~~vr~~a~~--~l~----~l~---~--~~~~~~~~~~l~  110 (337)
                      .+-..+...++.+..+++.+..   .+.+...+.+...-....|+..+..  ++.    .+.   .  ..|++.....-+
T Consensus       799 s~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~  878 (2067)
T KOG1822|consen  799 SLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSAL  878 (2067)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence            4566677777777777776632   2233333333333333445544433  222    222   1  556666666666


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhC---hhhHHHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG---VGFFDDK  186 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~  186 (337)
                      ..+...+...+|-.|-.+..++++++...+...+...+...+.+.+ +..++..|..-.-.++.+-+..|   ...+...
T Consensus       879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t  958 (2067)
T KOG1822|consen  879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNT  958 (2067)
T ss_pred             HHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence            7777778888999999999999999999987766555555554444 44566677776677777766654   4445555


Q ss_pred             HHHHHHHHccccch-HHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhc-Cc--chHHHHHHHHHHH------Hhcc
Q 019679          187 LGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMIN-NP--HYLYRMTILQAIS------LLAP  254 (337)
Q Consensus       187 l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~-~~--~~~vR~~~~~~l~------~l~~  254 (337)
                      -+.+++.+..|+.. .|+.-++.++..+....|+-.  +....+..+..++- .+  ...++++.-+++.      .+..
T Consensus       959 ~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alit 1038 (2067)
T KOG1822|consen  959 SVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALIT 1038 (2067)
T ss_pred             HHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHH
Confidence            56678888888766 999999999999988776532  23333444444433 33  2445555554444      4444


Q ss_pred             ccChH-----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHH
Q 019679          255 VMGSE-----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFA  323 (337)
Q Consensus       255 ~~~~~-----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a  323 (337)
                      ..|++           .++...+-...-++..+++-+..+++.+|.++.-.-......+.+.+.+..++..+.--.|...
T Consensus      1039 tlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~ 1118 (2067)
T KOG1822|consen 1039 TLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRAS 1118 (2067)
T ss_pred             hcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhH
Confidence            44332           1122233333344556678999999999999964433333345667777766554443344433


Q ss_pred             HHHHH
Q 019679          324 TQALQ  328 (337)
Q Consensus       324 ~~al~  328 (337)
                      ...+.
T Consensus      1119 ~~clr 1123 (2067)
T KOG1822|consen 1119 FSCLR 1123 (2067)
T ss_pred             Hhhhh
Confidence            33333

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.82  E-value=0.029  Score=52.45  Aligned_cols=138  Identities=18%  Similarity=0.208  Sum_probs=89.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh---hhH---hhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH---ILP---CVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~---ll~---~l~   75 (337)
                      |++..+|.+++.++..++..--|+. |++++|.+..++.+.|..--..|.++|..+......++....   .++   .+.
T Consensus       101 ~sn~ki~~~vay~is~Ia~~D~Pd~-WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f  179 (1005)
T KOG2274|consen  101 DSNSKIRSAVAYAISSIAAVDYPDE-WPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFVGPVSLAEMYRIF  179 (1005)
T ss_pred             ccccccchHHHHHHHHHHhccCchh-hHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence            6788899999999999999887777 699999999999998888889999999999887654432111   111   223


Q ss_pred             HhcCCCcHHHHHHHH--HHHHhcC---cccChh------hHHhhhHHHHHHhhc------C-CChhHHHHHHHhHHHhHh
Q 019679           76 ELSSDSSQHVRSALA--TVIMGMA---PILGKD------ATIEQLLPIFLSLLK------D-EFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~--~~l~~l~---~~~~~~------~~~~~l~~~l~~~l~------d-~~~~vr~~a~~~l~~l~~  137 (337)
                      .+....+...|..++  ..+....   ...++.      .....+++.+..++.      + .+...|...++++..+.+
T Consensus       180 ~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~  259 (1005)
T KOG2274|consen  180 ALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVE  259 (1005)
T ss_pred             hhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence            344455555555444  2222222   222211      112334444444432      2 345788888999888887


Q ss_pred             hhc
Q 019679          138 VIG  140 (337)
Q Consensus       138 ~~~  140 (337)
                      .+.
T Consensus       260 nfp  262 (1005)
T KOG2274|consen  260 NFP  262 (1005)
T ss_pred             hhH
Confidence            764

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.81  E-value=0.00026  Score=65.34  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-  258 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-  258 (337)
                      +...+.|.+....+.....+|..-..+|..+......+.+   .+.++|.+.+.+.=++..+|..+..++.-+....+. 
T Consensus       864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            3456888888888866678888889999998887755443   457899999999988888998888888876433321 


Q ss_pred             -HHHHhhHHHHHHhhccCCC---hhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          259 -EITCSQLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       259 -~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                       ......++|.++.+-.|++   ..||..|+++|+.+.+..+..   .+...++.+|.+.+.|+..-||..|+.+=+...
T Consensus       944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence             2246789999999988777   579999999999999876654   456789999999999999999999987755443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0033  Score=57.94  Aligned_cols=184  Identities=14%  Similarity=0.178  Sum_probs=128.0

Q ss_pred             HHHhcCCC-hHHHHHHHHHhHHHHHHhhCHHH----HHHhhhHhhHHhcCCC-cHHHHHHHHHHHHhcCcccChhhH---
Q 019679           35 YVRLLRDN-EAEVRIAAAGKVTKICRILNPEL----AIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDAT---  105 (337)
Q Consensus        35 l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~---  105 (337)
                      +++-++.+ ++.....++.-+.++......+.    -.+.++|.+.++++++ +..+-..||.++..+++.++....   
T Consensus       172 LL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV  251 (1051)
T KOG0168|consen  172 LLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVV  251 (1051)
T ss_pred             HHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheee
Confidence            33444333 66666666666666655444442    2467899999999875 679999999999999999886542   


Q ss_pred             HhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679          106 IEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--  182 (337)
Q Consensus       106 ~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  182 (337)
                      ..+.+|++++-+ .=+.-+|-+.+++++..+.+.=+..-+...-+-....++.==+..++..++......++.+..+.  
T Consensus       252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~  331 (1051)
T KOG0168|consen  252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFH  331 (1051)
T ss_pred             cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            356788887654 45678999999999999987644332222112222222211124467777777778888776554  


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG  218 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  218 (337)
                      +.-+.+|.+.++|...+..+-+.++.++.++++.+.
T Consensus       332 ~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  332 FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            445789999999999999999999999999998874

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0012  Score=58.02  Aligned_cols=153  Identities=13%  Similarity=0.106  Sum_probs=103.1

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  228 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  228 (337)
                      ..+.+++.|.++..|...+-.+..---.-|..    .++..+++ ..+|.+..||.+|+-+++-++..   +   ...++
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~---D---~~~lv  588 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD---D---RDLLV  588 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEec---C---cchhh
Confidence            35567788888888888665554332222332    23444444 47999999999999999877632   1   23555


Q ss_pred             HHHHhhcCc-chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhh
Q 019679          229 QVLEMINNP-HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIR  305 (337)
Q Consensus       229 ~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~  305 (337)
                      ..++.+.++ +++||....-+++..+..-|..    .-.+.+..+..|++.-||++|+-+++.|.....++.  -..-|.
T Consensus       589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~  664 (926)
T COG5116         589 GTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRII  664 (926)
T ss_pred             HHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence            566666654 6999999999999988777765    344667777899999999999999999876554431  123344


Q ss_pred             HHHHhhhCCCC
Q 019679          306 PCLVELSEDPD  316 (337)
Q Consensus       306 ~~l~~l~~d~~  316 (337)
                      ..+.....|+.
T Consensus       665 k~f~~vI~~Kh  675 (926)
T COG5116         665 KKFNRVIVDKH  675 (926)
T ss_pred             HHHHHHHhhhh
Confidence            44445555543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.78  E-value=0.0086  Score=53.16  Aligned_cols=139  Identities=17%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          143 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       143 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      .+.+.++-++......++..||..+++.+..++...++  +.....++.-+.+.+-|..+.||..|+.+|..+-+--+.+
T Consensus        87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence            44566777777888889999999999999999998877  5566677888888889999999999999999886544433


Q ss_pred             HHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHH-HHHHHHHhh
Q 019679          221 WAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV-AKVLQSLIP  293 (337)
Q Consensus       221 ~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a-~~~l~~i~~  293 (337)
                      .  ..+...+...+ +||+..||..++.-+..          .+.-.|+++....|-+...|+.. .++|..++.
T Consensus       167 e--n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd  229 (885)
T COG5218         167 E--NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGD  229 (885)
T ss_pred             H--HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcc
Confidence            2  11222333333 68899999988655532          34456777777777776666544 567777753

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.032  Score=51.62  Aligned_cols=325  Identities=15%  Similarity=0.202  Sum_probs=184.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----H-H--HHhhhH-----
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----L-A--IQHILP-----   72 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~-~--~~~ll~-----   72 (337)
                      ..+....-+++..+++.--|+. |+.++|.+..-++..|-.+-.+...+-..+.+...++    . +  .+.++.     
T Consensus       102 ~~iQ~qlseal~~Ig~~DFP~k-WptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~P  180 (960)
T KOG1992|consen  102 FNIQKQLSEALSLIGKRDFPDK-WPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEP  180 (960)
T ss_pred             HHHHHHHHHHHHHHhccccchh-hHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhH
Confidence            4566666777777776555555 6899999999998777666655555555555543322    1 1  111111     


Q ss_pred             ---hhH-------HhcCCCc----H-HHHHHHHHHHHhcCc-ccCh--hhHHhhhHHHHHHhhcCCC-------------
Q 019679           73 ---CVK-------ELSSDSS----Q-HVRSALATVIMGMAP-ILGK--DATIEQLLPIFLSLLKDEF-------------  121 (337)
Q Consensus        73 ---~l~-------~l~~d~~----~-~vr~~a~~~l~~l~~-~~~~--~~~~~~l~~~l~~~l~d~~-------------  121 (337)
                         .+.       ...+|..    + .|-...++.+..+.- -+++  |+..+..++.+.+++.-.+             
T Consensus       181 lt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l  260 (960)
T KOG1992|consen  181 LTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVL  260 (960)
T ss_pred             HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHH
Confidence               111       1122332    0 223333444444332 2221  2334678888888886221             


Q ss_pred             hhHHHHHHHhHHHhHhhhchhh--HHhhHHHHHHHHh----cCCch-HHHHHHHHHhhHhHhhhC-------h-------
Q 019679          122 PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----EDRHW-RVRLAIIEYIPLLASQLG-------V-------  180 (337)
Q Consensus       122 ~~vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~----~d~~~-~vr~~~~~~l~~l~~~~~-------~-------  180 (337)
                      ..+|...|..+........++.  +.+.++.....++    .|+.. .....+++.+..+++...       .       
T Consensus       261 ~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~  340 (960)
T KOG1992|consen  261 DKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQIC  340 (960)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHH
Confidence            3567777777777766654321  1222222233333    33322 334444555555544321       1       


Q ss_pred             ---------------hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChHHHHhhHHHHH----HHhhcCc--c
Q 019679          181 ---------------GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV----LEMINNP--H  238 (337)
Q Consensus       181 ---------------~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~~--~  238 (337)
                                     +.+.+..+..+-+-++-. ...-|.+|+..+..+++.++.. ....+-..+    -++.++|  +
T Consensus       341 e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~n  419 (960)
T KOG1992|consen  341 EKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGN  419 (960)
T ss_pred             HhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCcc
Confidence                           111111222222222222 2234778888899999888543 222222222    2333344  6


Q ss_pred             hHHHHHHHHHHHHhcccc-----C----------hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHh
Q 019679          239 YLYRMTILQAISLLAPVM-----G----------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  303 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~-----~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  303 (337)
                      |..+..++..+.+++...     |          .++|.+.++|.+.+-=..+.+-+|..+++-+-.+...++++. ...
T Consensus       420 Wk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~-lm~  498 (960)
T KOG1992|consen  420 WKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEH-LMA  498 (960)
T ss_pred             ccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHH-HHH
Confidence            999999999988886331     1          246677788888775556778899999988888888888764 467


Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      ++|.+...+...+.-|-..|+.+++.+-.
T Consensus       499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~  527 (960)
T KOG1992|consen  499 LLPRLIRFLEAESRVVHSYAAIAIEKLLT  527 (960)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence            88888888888888899999999987754

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.74  E-value=0.0038  Score=58.87  Aligned_cols=188  Identities=15%  Similarity=0.090  Sum_probs=135.8

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHhhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccC--
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILG--  101 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~---~~~~~~~~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~--  101 (337)
                      -++|.+.++++++-.+.|..-+-..+++...-   ..+.+.+..-.++.+.+++   -+++-|..++..|..+...+.  
T Consensus       512 GIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lG  591 (1387)
T KOG1517|consen  512 GIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLG  591 (1387)
T ss_pred             chHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchh
Confidence            48999999999999999999888888887642   2223333222333333333   245888999999998887543  


Q ss_pred             h-hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679          102 K-DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  176 (337)
Q Consensus       102 ~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  176 (337)
                      + ......++.++++.++|. .+-.|.=++-+|+.+-+.+..-.+   .......+...+.|+.++||.+++.+|+.+..
T Consensus       592 Q~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~  671 (1387)
T KOG1517|consen  592 QKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS  671 (1387)
T ss_pred             HHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence            2 334467889999999995 799999999999999887653221   23455666778899999999999999999887


Q ss_pred             hh----Chh--------------hHHHHHHH----HHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679          177 QL----GVG--------------FFDDKLGA----LCMQWLKDKVYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       177 ~~----~~~--------------~~~~~l~~----~l~~~l~d~~~~vr~~a~~~l~~~~~~~  217 (337)
                      ..    ...              ...+.+++    .++..++|.++.||...+.++..+....
T Consensus       672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             ccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            53    110              11233343    5667889999999999999999887543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.0012  Score=58.17  Aligned_cols=132  Identities=16%  Similarity=0.034  Sum_probs=97.3

Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679          188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEITCSQLL  266 (337)
Q Consensus       188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  266 (337)
                      -..+.+++.|.++-.|...+-+++.-...-|+.    .++..++.. .+|.+..||.+|+-+++.++-  .    ....+
T Consensus       518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~----D~~~l  587 (926)
T COG5116         518 DDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--D----DRDLL  587 (926)
T ss_pred             HHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEe--c----Ccchh
Confidence            346667889999999998877776544433443    344444444 678899999999999988762  1    23455


Q ss_pred             HHHHhhccC-CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          267 PVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       267 ~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +-..++|.+ .++.||.+.+-+|+..+..-|.+    .....|..+..|+..-||+.|+-|++.+...
T Consensus       588 v~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         588 VGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             hHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence            555566654 45899999999999998877753    4566777888999999999999999887654

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.72  E-value=0.0012  Score=63.14  Aligned_cols=216  Identities=18%  Similarity=0.132  Sum_probs=136.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHH------------HhcCCC-hHHHHHHHHHhHHHHHHhhCHHHHH
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV------------RLLRDN-EAEVRIAAAGKVTKICRILNPELAI   67 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~------------~~~~d~-~~~vR~~a~~~l~~~~~~~~~~~~~   67 (337)
                      ++++|.+|+.++-++.++.+.-+.......+-..+.            .+..|+ -..||++++.+|+.+.+++....+ 
T Consensus        87 ~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~-  165 (1549)
T KOG0392|consen   87 FEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLI-  165 (1549)
T ss_pred             cCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhh-
Confidence            589999999999999999988877654322111111            111221 247999999999999998877654 


Q ss_pred             HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh--hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---h
Q 019679           68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D  142 (337)
Q Consensus        68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~  142 (337)
                      ...+.++.+++.-++|.+|...+..+........+.  .....+++.+.+.+.|++.+||..|++.+..+....-.   +
T Consensus       166 ~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~  245 (1549)
T KOG0392|consen  166 KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQ  245 (1549)
T ss_pred             HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHh
Confidence            455667777777779999998887776655432221  12356778888899999999999999998777665511   1


Q ss_pred             ---hHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHh-HhhhChhhH-HHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          143 ---LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLL-ASQLGVGFF-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       143 ---~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l-~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                         .+...+...+.++..  ......|....+.+... ...+..... ...+.|-+..+++..-..+|.+++..+..+.+
T Consensus       246 ~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle  325 (1549)
T KOG0392|consen  246 KIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLE  325 (1549)
T ss_pred             HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               122223333333322  12223444444333332 111111111 12466667777788888899999999888876


Q ss_pred             Hh
Q 019679          216 EF  217 (337)
Q Consensus       216 ~~  217 (337)
                      .-
T Consensus       326 ~~  327 (1549)
T KOG0392|consen  326 AD  327 (1549)
T ss_pred             cC
Confidence            53

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.71  E-value=0.0049  Score=57.76  Aligned_cols=199  Identities=15%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             hhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-ChhhHHH
Q 019679          108 QLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDD  185 (337)
Q Consensus       108 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~~  185 (337)
                      ++..++.++... .....|..-..++...+..        .-+..+.+.+....-.... +...+..+.... .+   ..
T Consensus       363 ~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~--------~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P---t~  430 (618)
T PF01347_consen  363 DLEELYKQLKSKSKKEQARKIFLDALPQAGTN--------PAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP---TE  430 (618)
T ss_dssp             HHHHHHHHHTTS---HHHHHHHHHHHHHH-SH--------HHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT--------H
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC---CH
Confidence            344444333322 2456666666666665543        1222333333332221111 234444444333 22   13


Q ss_pred             HHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChH------------HHHhhHHHHHHHhh----cCcchHHHHHH
Q 019679          186 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPD------------WAMQHIVPQVLEMI----NNPHYLYRMTI  245 (337)
Q Consensus       186 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~------------~~~~~l~~~l~~~~----~~~~~~vR~~~  245 (337)
                      .++..+..+++.    .++.++..|+-+++.+....-..            ...+.+++.+...+    ...+...+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            456666666654    45679999999999887654211            12334444444444    45567889999


Q ss_pred             HHHHHHhccccChHHHHhhHHHHHHhhccCC---ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHH
Q 019679          246 LQAISLLAPVMGSEITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFF  322 (337)
Q Consensus       246 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~  322 (337)
                      +.+||.++.        +..++.+..++.+.   ...+|.+|+.+|..++.... +...+.++|.+.+-  ..+.+||..
T Consensus       511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRia  579 (618)
T PF01347_consen  511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRIA  579 (618)
T ss_dssp             HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHHH
T ss_pred             HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHHH
Confidence            999999763        35677777777666   67999999999998866543 23334444444432  235779988


Q ss_pred             HHHHHHH
Q 019679          323 ATQALQS  329 (337)
Q Consensus       323 a~~al~~  329 (337)
                      |...|-.
T Consensus       580 A~~~lm~  586 (618)
T PF01347_consen  580 AYLILMR  586 (618)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8766643

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=97.66  E-value=0.0069  Score=56.75  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ++.||....-+++.++-  ..+...+.++|.+.+-++ .....+|...+-+++.++.....  ..+.-+|.+...+.|++
T Consensus       944 ~~~vra~~vvTlakmcL--ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen  944 SDKVRAVGVVTLAKMCL--AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred             chHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCch
Confidence            45677777777777763  334444668998888875 45688999999888888776433  23456799999999999


Q ss_pred             HHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679           83 QHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  150 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp  150 (337)
                      +-||+.++..|.++..   .+.  ....++-.+...+-|.++++|.-+=-.++.+.+.-.+..+...++.
T Consensus      1020 ~iVRrqt~ilL~rLLq---~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe 1086 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQ---FGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVE 1086 (1529)
T ss_pred             HHHHHHHHHHHHHHHh---hhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence            9999999999988764   111  1123433444445589999999888888877766444333333333

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.0047  Score=50.38  Aligned_cols=138  Identities=12%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--HhhHHHHH
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQV  230 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l  230 (337)
                      .+.+.+|......+..+..++.+-...  .....++..+.+-++.....|-.+|+.+++.+...++....  .+.++-.+
T Consensus        96 ~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L  175 (334)
T KOG2933|consen   96 KLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL  175 (334)
T ss_pred             HhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666555555555432211  11223444444555555566666666666666655533211  11112222


Q ss_pred             HHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          231 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       231 ~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ..-..+.+--+|..+-.++..+.....+.    .+++.+...+...++.+|..++.++......+|
T Consensus       176 l~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~  237 (334)
T KOG2933|consen  176 LHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG  237 (334)
T ss_pred             HhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence            22222334455666666666655544433    233333333444555666655555555544443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.59  E-value=0.0016  Score=49.81  Aligned_cols=153  Identities=20%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCc---ccch------------HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhh
Q 019679            6 RVRYMVANQLYELCEAVGPEPT---RSDV------------VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI   70 (337)
Q Consensus         6 ~vR~~~~~~l~~~~~~~~~~~~---~~~l------------~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~l   70 (337)
                      +||..+..++..+++..++...   |+.+            -+.+.-++.|+++.+|.+|+..+..+.+...+.      
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~------   74 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF------   74 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH------
Confidence            5899999999999998554321   2223            334566778999999999999999998863221      


Q ss_pred             hHhhHHhcCCCcHH--HHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhc----hhh
Q 019679           71 LPCVKELSSDSSQH--VRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIG----IDL  143 (337)
Q Consensus        71 l~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~----~~~  143 (337)
                         +. ..++....  --......++.+.         .++-..+...+ .+.+..+-...++++..+++..+    +..
T Consensus        75 ---L~-~Ae~~~~~~~sFtslS~tLa~~i---------~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~  141 (182)
T PF13251_consen   75 ---LA-QAEESKGPSGSFTSLSSTLASMI---------MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPG  141 (182)
T ss_pred             ---HH-HHHhcCCCCCCcccHHHHHHHHH---------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHh
Confidence               10 11111100  0001111222211         11112222222 23345555566666666655433    234


Q ss_pred             HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      +...++..+...+.+.+..+|..++.+++.+...
T Consensus       142 ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  142 LLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            4455566666666666666666666666655543

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.56  E-value=0.0025  Score=61.16  Aligned_cols=222  Identities=12%  Similarity=0.091  Sum_probs=133.6

Q ss_pred             hHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhh---------HHHHHHhhcCC-ChhHHHHHHHhHHHhHh
Q 019679           71 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQL---------LPIFLSLLKDE-FPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        71 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l---------~~~l~~~l~d~-~~~vr~~a~~~l~~l~~  137 (337)
                      +..+....-+++|.+|..+.-++..+.+..+.....   +++         +..+-.++.|+ -..||.+++++++.+.+
T Consensus        79 ~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~  158 (1549)
T KOG0392|consen   79 LEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLK  158 (1549)
T ss_pred             HHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHH
Confidence            333344444677777777777777766554433221   111         11222223332 24799999999999998


Q ss_pred             hhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          138 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       138 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      ...+..+ ...+..+.++...+.|++|++-+..+........  -......+++.+.+.+.|.+..||..|+..+..+..
T Consensus       159 ~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s  237 (1549)
T KOG0392|consen  159 HMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPS  237 (1549)
T ss_pred             hhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhH
Confidence            8765544 6677888888888899999988777665544221  123455678888899999999999999999887776


Q ss_pred             HhChHH---HHhhHHHHHHHhhcC---cc---hHHHHHHHHHHHHh-ccccChH-HHHhhHHHHHHhhccCCChhHHHHH
Q 019679          216 EFGPDW---AMQHIVPQVLEMINN---PH---YLYRMTILQAISLL-APVMGSE-ITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       216 ~~~~~~---~~~~l~~~l~~~~~~---~~---~~vR~~~~~~l~~l-~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                      .+ ...   -...++..++..+.+   -.   ...|......+... ...+... .....+.|-++.++......+|.++
T Consensus       238 ~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~  316 (1549)
T KOG0392|consen  238 IQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAA  316 (1549)
T ss_pred             HH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence            55 111   122233333333321   11   12222111111111 0001111 1123577888888888999999999


Q ss_pred             HHHHHHHhhh
Q 019679          285 AKVLQSLIPI  294 (337)
Q Consensus       285 ~~~l~~i~~~  294 (337)
                      +..+..+.+.
T Consensus       317 l~~l~~lle~  326 (1549)
T KOG0392|consen  317 LETLAMLLEA  326 (1549)
T ss_pred             HHHHHHHHhc
Confidence            9999888654

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.52  E-value=0.079  Score=49.22  Aligned_cols=247  Identities=12%  Similarity=0.104  Sum_probs=131.6

Q ss_pred             hhHhhHHhcCCCcHHHHHHHHHHHHhcCccc--------ChhhHHhhhHHHHHHhhc-------CCChhHHHHHHHhHHH
Q 019679           70 ILPCVKELSSDSSQHVRSALATVIMGMAPIL--------GKDATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQ  134 (337)
Q Consensus        70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--------~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~  134 (337)
                      ++|.+...++.++..|...|+.++.++....        +.+.....+.+.+..++.       .+++-+-++..+.+..
T Consensus       499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i  578 (960)
T KOG1992|consen  499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI  578 (960)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence            4566666777778888888888887775433        333333334444444441       1223333333333322


Q ss_pred             hHhhhchhhHHhhHHHHHHHH----hcC-CchHHHHHHHHHhhHhHhhhChhh------HHHHHHHHHHHHccccchHHH
Q 019679          135 VNQVIGIDLLSQSLLPAIVEL----AED-RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIR  203 (337)
Q Consensus       135 l~~~~~~~~~~~~llp~l~~~----~~d-~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr  203 (337)
                      .-+.+-  ...+.+++.+.++    .+. ++++--+...+.++.+....+...      +.+.++|.+...+..+-.+.-
T Consensus       579 ~~~~i~--p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~Efi  656 (960)
T KOG1992|consen  579 LQSAII--PHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFI  656 (960)
T ss_pred             CHHhhh--hhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211110  0113344444433    333 456777888888888877665433      677888988888887777777


Q ss_pred             HHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH---HHHHHHHHHhccccCh----HHHHhhHHHHHHhhccCC
Q 019679          204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR---MTILQAISLLAPVMGS----EITCSQLLPVVINASKDR  276 (337)
Q Consensus       204 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR---~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~  276 (337)
                      -.+...++.+.+..++ .+-+.+.|.+--+++..-|..+   -+.++.+..+.+.-..    ......++.++-++...+
T Consensus       657 PYvfQlla~lve~~~~-~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSk  735 (960)
T KOG1992|consen  657 PYVFQLLAVLVEHSSG-TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASK  735 (960)
T ss_pred             HHHHHHHHHHHHhcCC-CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCc
Confidence            7778888888776654 2223333333333333334433   2233333333322111    122456777777777655


Q ss_pred             ChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHH
Q 019679          277 VPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRF  321 (337)
Q Consensus       277 ~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~  321 (337)
                      ....  .+...|..+...+...    +......-.+..+.+.+.++...
T Consensus       736 a~Dh--~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k  782 (960)
T KOG1992|consen  736 ANDH--HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVK  782 (960)
T ss_pred             ccch--hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHH
Confidence            4333  4666777777666654    22233444444566666665333

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.51  E-value=0.012  Score=54.51  Aligned_cols=136  Identities=14%  Similarity=0.150  Sum_probs=83.9

Q ss_pred             HHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhh----cCcchHHHHHHHHHHHH
Q 019679          186 KLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMI----NNPHYLYRMTILQAISL  251 (337)
Q Consensus       186 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~----~~~~~~vR~~~~~~l~~  251 (337)
                      .++..++.++++    ..+.+|..|.-+++.+....-.      ....+.+++.+.+.+    ++.+...+..++.+||.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            466667777765    3567999999999988864311      112244555555444    34556678889999988


Q ss_pred             hccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          252 LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       252 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      ++..    .....+.|++. .-.+....+|.+|+.+|..++..... ...+.+++.+.+  .+.+++||..|.-.|-.
T Consensus       473 ~g~~----~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      473 AGHP----SSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-KVQEVLLPIYLN--RAEPPEVRMAAVLVLME  542 (574)
T ss_pred             cCCh----hHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            6642    22334444443 22344568999999999988765442 223344444422  23467899888877644

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=97.45  E-value=0.083  Score=50.02  Aligned_cols=182  Identities=14%  Similarity=0.113  Sum_probs=118.9

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH---------------
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL---------------  173 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~---------------  173 (337)
                      +..++...+-|+.+.||..|+.++..+.+..+...- ..++..+..-..|+...++++.-..+..               
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~-~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l  551 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREA-FSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLL  551 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccch-HHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhc
Confidence            556677778899999999999999999887654321 2333333333344444444443322211               


Q ss_pred             -----hHhh-------hChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          174 -----LASQ-------LGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       174 -----l~~~-------~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                           +..-       -|...+...++.++...++ |+...||.++++.+..+....+.....+..+-.+.....|+-..
T Consensus       552 ~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vs  631 (1529)
T KOG0413|consen  552 LDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVS  631 (1529)
T ss_pred             CcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchH
Confidence                 1111       1223345567777888887 88889999999999988887766655565677788888899999


Q ss_pred             HHHHHHHHHHHhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          241 YRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      +|..++.+++.+.-.-.. -......+..+..++.|....|...|...+..+
T Consensus       632 vrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~  683 (1529)
T KOG0413|consen  632 VRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV  683 (1529)
T ss_pred             HHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            999999999887422111 122345566677777777777777776644433

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.38  E-value=0.18  Score=52.23  Aligned_cols=257  Identities=13%  Similarity=0.139  Sum_probs=153.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC------cccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP------TRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPEL--AIQHILP   72 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~------~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~   72 (337)
                      +++..++..++..|.+++..+.+..      ..++++..+...+. ..+.+||...++++..+........  -.+.++.
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            3456788999999999998776432      12356666666554 4568999999999999887655431  1234555


Q ss_pred             hhHHhcCCCcHHHHHHHHHHHHhcCcc-cC---h--hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhc-----
Q 019679           73 CVKELSSDSSQHVRSALATVIMGMAPI-LG---K--DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIG-----  140 (337)
Q Consensus        73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~-----  140 (337)
                      .+.....++++.+-..+.+.+..+... ++   .  .....+++..+.++.+.. +.++-..|+..+..++..+-     
T Consensus      1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~ 1307 (1780)
T PLN03076       1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLG 1307 (1780)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccc
Confidence            555566777777777787777766432 21   1  123345666666666533 34555555555544322220     


Q ss_pred             ------------------------------hhhHHhhHHHHHH---HHhcCCchHHHHHHHHHhhHhHhhhChh----h-
Q 019679          141 ------------------------------IDLLSQSLLPAIV---ELAEDRHWRVRLAIIEYIPLLASQLGVG----F-  182 (337)
Q Consensus       141 ------------------------------~~~~~~~llp~l~---~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~-  182 (337)
                                                    .+......+|.+.   .+..|....||..+++.|=.+....|..    . 
T Consensus      1308 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W 1387 (1780)
T PLN03076       1308 SSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLW 1387 (1780)
T ss_pred             ccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence                                          0111234555554   4467899999999998877666655542    2 


Q ss_pred             ---HHHHHHHHHHHHcc----------------------ccchHHHHHHHHHHHHHHHHhCh-----HHHHhhHHHHHHH
Q 019679          183 ---FDDKLGALCMQWLK----------------------DKVYSIRDAAANNVKRLAEEFGP-----DWAMQHIVPQVLE  232 (337)
Q Consensus       183 ---~~~~l~~~l~~~l~----------------------d~~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~  232 (337)
                         +...+.|++-..=.                      +...++.+.+..++..++..+..     ....+.++..+..
T Consensus      1388 ~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ 1467 (1780)
T PLN03076       1388 ERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVS 1467 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22345555433100                      11224566666676666655532     1134556666677


Q ss_pred             hhcCcchHHHHHHHHHHHHhccccCh
Q 019679          233 MINNPHYLYRMTILQAISLLAPVMGS  258 (337)
Q Consensus       233 ~~~~~~~~vR~~~~~~l~~l~~~~~~  258 (337)
                      ++..++...=..+..++..+....|.
T Consensus      1468 ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1468 FIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             HHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            77777777666777888887655553

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.093  Score=50.55  Aligned_cols=241  Identities=15%  Similarity=0.086  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC-CCccc-----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH--HHhhhHhhHH-
Q 019679            6 RVRYMVANQLYELCEAVGP-EPTRS-----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKE-   76 (337)
Q Consensus         6 ~vR~~~~~~l~~~~~~~~~-~~~~~-----~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~-   76 (337)
                      .+|...+..++.+....+. .....     .++..+..+-..+--.+|..|.-+..++-..+-....  ..+.-..=++ 
T Consensus       170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl  249 (1048)
T KOG2011|consen  170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL  249 (1048)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3677778888887777665 22222     2444444444445566788777666555433211100  0000000000 


Q ss_pred             -hcCCCcHHH--HHHHHHHHHhcCcccChhhHHhhhHHHHHH-----hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhH
Q 019679           77 -LSSDSSQHV--RSALATVIMGMAPILGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  148 (337)
Q Consensus        77 -l~~d~~~~v--r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  148 (337)
                       +-...+..-  |...+.......  -+.....+.++..+..     --+|-.+++|..+++.|+...+.++.-.+....
T Consensus       250 eaEr~k~r~~rarle~Ll~~r~et--qe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsY  327 (1048)
T KOG2011|consen  250 EAERNKSRGNRARLESLLMLRKET--QEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSY  327 (1048)
T ss_pred             HHHhcccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchH
Confidence             111111111  222222222222  2222222333333332     347999999999999999999998877777788


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhHhHhhh---C-hhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679          149 LPAIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM  223 (337)
Q Consensus       149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~  223 (337)
                      +..+-..+.|++..||..++.++..+.+.-   + -+.|.+.+-.-++++. .|-+..||...+..+-....   ...+.
T Consensus       328 LKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~---~g~L~  404 (1048)
T KOG2011|consen  328 LKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS---SGLLS  404 (1048)
T ss_pred             HHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc---ccccC
Confidence            899999999999999999999999988772   1 2234445555555555 77888898887766554421   11111


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISL  251 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~  251 (337)
                      ..=+-.+..++-|.+.+++.++...+..
T Consensus       405 d~di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  405 DKDILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             hhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence            2233445567777888888887766543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.35  E-value=0.0015  Score=43.85  Aligned_cols=83  Identities=20%  Similarity=0.194  Sum_probs=55.0

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      +......++|+.+-+|..++..|.++.+.-+ .....+.++..+...++|+++.|-.+|++++..++...+     +.++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl   79 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVL   79 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHH
Confidence            4445566677777788888887777777665 444456677777777777777777777777777776554     2345


Q ss_pred             HHHHHhhcC
Q 019679          111 PIFLSLLKD  119 (337)
Q Consensus       111 ~~l~~~l~d  119 (337)
                      |.+.+...|
T Consensus        80 ~~L~~~y~~   88 (92)
T PF10363_consen   80 PILLDEYAD   88 (92)
T ss_pred             HHHHHHHhC
Confidence            555554443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.27  E-value=0.14  Score=46.77  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=85.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH--------HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL--------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD  103 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  103 (337)
                      +..+.+++.++.-..|-..++.++.+......+.        ....++..+.+-++|.+|.+|..+++.+.++...-...
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            4567788888889999999999999988765442        33557788888899999999999999999887643322


Q ss_pred             h-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhh
Q 019679          104 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  138 (337)
Q Consensus       104 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  138 (337)
                      . ...++.......+.|.+..||+.|++-+..+.-.
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~  416 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR  416 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence            2 2467888899999999999999999998877543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.26  E-value=0.0085  Score=54.26  Aligned_cols=149  Identities=11%  Similarity=0.078  Sum_probs=110.1

Q ss_pred             ChhhHHHHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhc
Q 019679          179 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA  253 (337)
Q Consensus       179 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~  253 (337)
                      |.......+.|++.+....    .++++..+|.-++.++... +.++. ..-+|.+...+. ++++++|..++..++.+.
T Consensus       885 GeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMCl-S~~fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~  962 (1128)
T COG5098         885 GEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCL-SFEFC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFL  962 (1128)
T ss_pred             chhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHH-hHHHH-HHHHHHHHHHHhhCCCcceeccceeeccccc
Confidence            5556667788888888876    7788999999999988764 34443 445677766665 889999999998888877


Q ss_pred             cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          254 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       254 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      -.+..  +.+..-.++...|.|.+..||+.+.-++..+.-. | +.-..--++.+..++.|++.++...|...+..+++.
T Consensus       963 vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLila-g-q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         963 VCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-G-QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             eehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-c-ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            55543  4566778899999999999999999888877421 1 111123455566788899998888888888777654

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.25  E-value=0.088  Score=45.59  Aligned_cols=125  Identities=17%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc------cccchHHHHHHHHHHHHHHHHh--------------C-h
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL------KDKVYSIRDAAANNVKRLAEEF--------------G-P  219 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~~~~~~--------------~-~  219 (337)
                      ...|.++.+.+..+++..+... .+.+...+...+      ...+|.-+.+|+..++.++...              . .
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            4455566666666666554432 122222222222      2355666666666666654322              0 2


Q ss_pred             HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHH
Q 019679          220 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  288 (337)
Q Consensus       220 ~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  288 (337)
                      +.+...++|-+. --.+..+-+|..|++.+..+...++++ ....++|.+...|.+++.-|+.-|+.++
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            444555666665 223345667777777777777777665 4446777788888777777777776653

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=97.24  E-value=0.0075  Score=45.83  Aligned_cols=119  Identities=16%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhc---Ccc
Q 019679           26 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGM---API   99 (337)
Q Consensus        26 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l---~~~   99 (337)
                      ...+.++|.+.+.+.+.+.-.|-.|...+..+.+..+.+   .+...+++.+++.++..++.|...++++|..+   ...
T Consensus        34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence            345679999999999999999999999999998883443   34566777788899999999999999999999   777


Q ss_pred             cChhh--HHhhhHHHHHHhhcC-----------CChhHHHHHHHhHHHhHhhhchhhH
Q 019679          100 LGKDA--TIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIGIDLL  144 (337)
Q Consensus       100 ~~~~~--~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~l~~~~~~~~~  144 (337)
                      .|+..  ...+++|.+--+.+.           ....++...-.+|..+-+.-|++.+
T Consensus       114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~  171 (183)
T PF10274_consen  114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF  171 (183)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence            77543  235666666533322           2245666666666666666666544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=97.23  E-value=0.019  Score=43.70  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcCcchHHHHHHHHHHHHh---ccccC
Q 019679          184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG  257 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l---~~~~~  257 (337)
                      .+.++|+++..+.+....-|-.|...+..+.+.-+.+.+   .+++++.+...++.++..+..+++.++..+   ....|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            467999999999999888899999999999887344433   567888888999999999999999999999   66666


Q ss_pred             hH--HHHhhHHHHHHhhccC-----------CChhHHHHHHHHHHHHhhhhcHH
Q 019679          258 SE--ITCSQLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       258 ~~--~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      ..  ++..+++|.+.-+.+.           ....++.-...+|..+-..-|++
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            44  3455677777633221           22455555556666664444444

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.064  Score=44.99  Aligned_cols=176  Identities=14%  Similarity=0.067  Sum_probs=99.9

Q ss_pred             CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHH
Q 019679          158 DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLE  232 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~  232 (337)
                      ..+..-|..++..+..+++.++...  ..-..++.++..+++++..+|+.|+..++...+....  + .+....++.+..
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            3455667777777777777664332  2222344445588888888898888888888776432  1 112234555555


Q ss_pred             hhc-CcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccC--CChhHHHHHHHHHHHHhhhhcHH--HHH-Hh
Q 019679          233 MIN-NPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS--VVE-KS  303 (337)
Q Consensus       233 ~~~-~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~~--~~~-~~  303 (337)
                      .+. +.+.++|..++.+++.+...+..   .++.-.=...+...+.+  .+...+..++..++.+.+.-..+  ... ..
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            554 45577888888888888765542   22222334556666666  44555566666666665432221  111 12


Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +...+..+..--+.+++..+..++-...+.
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            222223344444556666666666555443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.15  E-value=0.038  Score=50.13  Aligned_cols=222  Identities=14%  Similarity=0.134  Sum_probs=146.7

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH--HhcC-----CCcHHHHHHHHHHHHhcCcccCh
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALATVIMGMAPILGK  102 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~--~l~~-----d~~~~vr~~a~~~l~~l~~~~~~  102 (337)
                      +.++.+.-...|++.+|...|-..|-++...+....+.+.+...+.  ....     -.++.+|.-.+..|.+=....  
T Consensus       237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa--  314 (501)
T PF13001_consen  237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA--  314 (501)
T ss_pred             hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH--
Confidence            5666666677899999999999999888776666666666666554  2111     245677777777666522111  


Q ss_pred             hhHHhhhHHHHHHhhcCC--ChhHHHHHHHhH---HHhHhhhchhhH---HhhHHHHHHHHhc--------CCchHHHHH
Q 019679          103 DATIEQLLPIFLSLLKDE--FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLA  166 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~llp~l~~~~~--------d~~~~vr~~  166 (337)
                       .....++.++...+.+.  +..+|..+++-+   ......+++..+   .+.++..+.+.++        ..+...|..
T Consensus       315 -~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~  393 (501)
T PF13001_consen  315 -TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL  393 (501)
T ss_pred             -hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence             01245666677777666  678888888888   888777775433   3334444444442        245679999


Q ss_pred             HHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-----HHhh-HHHHHHHhhcCcch
Q 019679          167 IIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-----AMQH-IVPQVLEMINNPHY  239 (337)
Q Consensus       167 ~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-----~~~~-l~~~l~~~~~~~~~  239 (337)
                      +.++++.+++....-. -.-.++..++..|+++.+++|.+.-.+|+.+...+....     .... +.-.+.....+...
T Consensus       394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~  473 (501)
T PF13001_consen  394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR  473 (501)
T ss_pred             HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence            9999999998875533 224688888888899999999999999998888774311     1111 22222333344557


Q ss_pred             HHHHHHHHHHHHhcc
Q 019679          240 LYRMTILQAISLLAP  254 (337)
Q Consensus       240 ~vR~~~~~~l~~l~~  254 (337)
                      .+|..++++...+-.
T Consensus       474 ~~R~~avk~an~~fp  488 (501)
T PF13001_consen  474 SCRYAAVKYANACFP  488 (501)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            788888888777544

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.14  E-value=0.21  Score=46.16  Aligned_cols=304  Identities=15%  Similarity=0.132  Sum_probs=168.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--------HHHHh-hhHhhHHhcCC------C----------cHHH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQH-ILPCVKELSSD------S----------SQHV   85 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~~~~~-ll~~l~~l~~d------~----------~~~v   85 (337)
                      ++|.+.+.+.|+++++-....-.+......+.+.        ...+. ++...++++-|      .          ...+
T Consensus       336 ~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~  415 (980)
T KOG2021|consen  336 IVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEV  415 (980)
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHH
Confidence            6888888888877777666665555443332211        11222 33334443321      1          1356


Q ss_pred             HHHHHHHHHhcCcccChhhHHhhhHHHHHHhh---cCCChhHHHHHHHhHHHhHhhhchh------------hHHhhHHH
Q 019679           86 RSALATVIMGMAPILGKDATIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGID------------LLSQSLLP  150 (337)
Q Consensus        86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~llp  150 (337)
                      |+..-..+..++..-+ +.....+-..+...+   +.++...-+.|+.-+-.+++....+            .....+++
T Consensus       416 RkkLk~fqdti~~idp-sl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~  494 (980)
T KOG2021|consen  416 RKKLKNFQDTIVVIDP-SLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNEL  494 (980)
T ss_pred             HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHH
Confidence            6665555544444332 444444444444433   3455677788888888888775432            12234444


Q ss_pred             HHH--HHhcCCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHH--HHccccchHHHHHHHHHHHHHHHHhChHH--HH
Q 019679          151 AIV--ELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCM--QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AM  223 (337)
Q Consensus       151 ~l~--~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~  223 (337)
                      .+.  ....++++.|.-...+.+.+..+.+..+. +.+-++..++  ..+...+..||..|...+.++.+.+....  +.
T Consensus       495 ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfi  574 (980)
T KOG2021|consen  495 LLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFI  574 (980)
T ss_pred             HHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            443  23577888899999999888888775542 3333333332  34556788999988888887776642211  11


Q ss_pred             hhHHHHHHHhh------------------------------------------------------------------cCc
Q 019679          224 QHIVPQVLEMI------------------------------------------------------------------NNP  237 (337)
Q Consensus       224 ~~l~~~l~~~~------------------------------------------------------------------~~~  237 (337)
                      +.++..+.+++                                                                  +|.
T Consensus       575 e~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde  654 (980)
T KOG2021|consen  575 EEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDE  654 (980)
T ss_pred             HHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccc
Confidence            12222222222                                                                  112


Q ss_pred             chHHH----HHHHHHHHHhccccCh----------HHHHhhHHHHHHhhcc--CCChhHHHHHHHHHHHHhhhhcHHHHH
Q 019679          238 HYLYR----MTILQAISLLAPVMGS----------EITCSQLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSVVE  301 (337)
Q Consensus       238 ~~~vR----~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~  301 (337)
                      ...+.    ..++.+++.++..+..          .......++.++..+.  .....+|.++-.+++++...+|++.+ 
T Consensus       655 ~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vl-  733 (980)
T KOG2021|consen  655 ASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVL-  733 (980)
T ss_pred             cccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhh-
Confidence            22222    2344566666654421          1112233333333332  33468999999999999999998643 


Q ss_pred             HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      ..+..++..+++|.+.+=-.--.-.|+.+..+|++
T Consensus       734 Pfipklie~lL~s~d~kEmvdfl~flsQLihkfk~  768 (980)
T KOG2021|consen  734 PFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT  768 (980)
T ss_pred             cchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            56666667788888876444445556666655543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=97.11  E-value=0.011  Score=44.52  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHhcCCchHH-HHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          146 QSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      ...+..+...++|++-.. +..++.++..+.+..|..  .+.++++|.+++.++..+...|+.....|+.+..
T Consensus        85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            344555555555554332 233455555555444433  3667777777777776666777777777666654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.09  E-value=0.014  Score=44.66  Aligned_cols=128  Identities=21%  Similarity=0.176  Sum_probs=66.8

Q ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679          190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  269 (337)
Q Consensus       190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  269 (337)
                      .+.-.+.|+++.||.+|+..+..+.+..  .    ..+....+.-...     .+    +..++..+|.-  ...+-..+
T Consensus        44 Llt~il~Dp~~kvR~aA~~~l~~lL~gs--k----~~L~~Ae~~~~~~-----~s----FtslS~tLa~~--i~~lH~~L  106 (182)
T PF13251_consen   44 LLTCILKDPSPKVRAAAASALAALLEGS--K----PFLAQAEESKGPS-----GS----FTSLSSTLASM--IMELHRGL  106 (182)
T ss_pred             hhHHHHcCCchhHHHHHHHHHHHHHHcc--H----HHHHHHHhcCCCC-----CC----cccHHHHHHHH--HHHHHHHH
Confidence            3445678999999999999999988753  1    1111111111000     00    11111111111  11122222


Q ss_pred             Hhh-ccCCChhHHHHHHHHHHHHhhhhc----HHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          270 INA-SKDRVPNIKFNVAKVLQSLIPIVD----QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       270 ~~~-l~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      ... ..+.+..+-...++++..+....+    +..+...+...+..+....|.+||..+.-+++.+.+..
T Consensus       107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            222 244456666677777777764421    12344556666666666677777777777777776543

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=97.09  E-value=0.067  Score=47.54  Aligned_cols=227  Identities=15%  Similarity=0.138  Sum_probs=117.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchH-HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH---HHhhhHhhHHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVV-PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKEL   77 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~-~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~l   77 (337)
                      |.-.+.|..++++||.++..++.... ..++ +.+...++++...-|..+...+..++........   .+.+.+.+...
T Consensus        98 d~v~r~Ri~aA~ALG~l~~~~~~~~~-~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~  176 (441)
T PF12054_consen   98 DVVIRARIAAAKALGLLLSYWPESSL-QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI  176 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchH-HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence            44578999999999999999966554 4444 4789999999999999999999999987654311   13444555555


Q ss_pred             cCCCc-----------HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc---CCC------hhHHHHHHHhHHHhHh
Q 019679           78 SSDSS-----------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK---DEF------PDVRLNIISKLDQVNQ  137 (337)
Q Consensus        78 ~~d~~-----------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~------~~vr~~a~~~l~~l~~  137 (337)
                      ++++.           .++|..+-..+..+....-   ....-+|.+-....   +..      ......+-..+..+.+
T Consensus       177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~---~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~  253 (441)
T PF12054_consen  177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK---VPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK  253 (441)
T ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC---CChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence            55322           2455555444444332110   00111111111111   000      0111111111222222


Q ss_pred             hhchh----------hHHhhHHHHHHHH---hcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHH
Q 019679          138 VIGID----------LLSQSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIR  203 (337)
Q Consensus       138 ~~~~~----------~~~~~llp~l~~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr  203 (337)
                      .++..          .-...+...+...   -...+.+|+.+++.++..+... ++ ...+ ++..++..+ +.++..++
T Consensus       254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~-KLnP-iIrpLMdSIK~Een~~LQ  330 (441)
T PF12054_consen  254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PK-KLNP-IIRPLMDSIKREENELLQ  330 (441)
T ss_pred             hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC-CccH-HHHHHHHHhhccccHHHH
Confidence            22211          0111222222211   2223345556655555554322 22 2334 444444444 45778999


Q ss_pred             HHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhc
Q 019679          204 DAAANNVKRLAEEFGPD--WAMQHIVPQVLEMIN  235 (337)
Q Consensus       204 ~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~  235 (337)
                      ..++.+++.+...+-..  .-.++++.-++.++-
T Consensus       331 ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC  364 (441)
T PF12054_consen  331 QRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLC  364 (441)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhc
Confidence            99999999998776311  113456666666653

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=97.09  E-value=0.0069  Score=45.62  Aligned_cols=148  Identities=14%  Similarity=0.082  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh-hcCcchHHHHHHHHHHHHhccc-cCh
Q 019679          182 FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPV-MGS  258 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~vR~~~~~~l~~l~~~-~~~  258 (337)
                      .-++++++.+++.++. .++.+|..+++.+|.++- +++-.+.. +....... -.+.+........   ...... ...
T Consensus         6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~-~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~e   80 (160)
T PF11865_consen    6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS-IQKSLDSKSSENSNDESTDISL---PMMGISPSSE   80 (160)
T ss_pred             HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc-ccccCCccccccccccchhhHH---hhccCCCchH
Confidence            3457899999998875 468999999999998753 44432210 10000000 0111111111111   111111 234


Q ss_pred             HHHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          259 EITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       259 ~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      +++....+..+...++|+.. .-..++++++-.+.+..|..  .+..+++|.+.......+...|....+-|+.+....
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv  159 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV  159 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            55666778888999999874 44556778877777666554  567889999999888777789999888888887654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.06  E-value=0.016  Score=38.96  Aligned_cols=81  Identities=19%  Similarity=0.122  Sum_probs=58.4

Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhC-hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHH
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV  230 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  230 (337)
                      ..+.+.|+...+|..++..+..++.... .....+.++.+++..++|+++-|=-.|++++..++..++.     .++|.+
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L   82 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL   82 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence            3445567777788777777777777666 4445677888888888888888888888888888876632     366666


Q ss_pred             HHhhcCc
Q 019679          231 LEMINNP  237 (337)
Q Consensus       231 ~~~~~~~  237 (337)
                      ++.+.+.
T Consensus        83 ~~~y~~~   89 (92)
T PF10363_consen   83 LDEYADP   89 (92)
T ss_pred             HHHHhCc
Confidence            6665553

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.06  E-value=0.12  Score=41.81  Aligned_cols=197  Identities=14%  Similarity=0.106  Sum_probs=117.1

Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHH
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  153 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~  153 (337)
                      +.++.+.+++++....++++..++..-.  .....++..+..+........+..+...+..+.+.-. ..+ +.+-+.+.
T Consensus         6 ~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-~~L~~~L~   81 (234)
T PF12530_consen    6 LYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-PFLQPLLL   81 (234)
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-HHHHHHHH
Confidence            3447777888888888888888886442  2334556666666666666666666666666665421 111 22222222


Q ss_pred             H---------HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHHH
Q 019679          154 E---------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM  223 (337)
Q Consensus       154 ~---------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~  223 (337)
                      .         .-++..|....+.+..+..++...+.  ....+++.+...+ ++.++.++..++.++..+++.--.+.  
T Consensus        82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~--  157 (234)
T PF12530_consen   82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF--  157 (234)
T ss_pred             HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH--
Confidence            2         12355677777777777777776655  4567888888999 78888999999999999984321121  


Q ss_pred             hhHHHHHHHhhc-CcchHHHHHHHHHHHHhcccc-Ch---HHHHhhHHHHHHhhccCCCh
Q 019679          224 QHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVM-GS---EITCSQLLPVVINASKDRVP  278 (337)
Q Consensus       224 ~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~-~~---~~~~~~l~~~l~~~l~d~~~  278 (337)
                      ......+...+. +..+.+-...+..+..+...- ..   +.+...++..++++......
T Consensus       158 ~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  158 YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            122223333332 223344443444444433221 11   23456788888888776664

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=97.03  E-value=0.15  Score=42.69  Aligned_cols=180  Identities=17%  Similarity=0.146  Sum_probs=130.9

Q ss_pred             hHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHh---hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679          109 LLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--  182 (337)
Q Consensus       109 l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~---~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  182 (337)
                      +-..+.+++.-.= ..|...|++....+.+.+|++.+.+   ...|.+..+....+.+||-..++.+....-.+|+..  
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p  134 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP  134 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence            4444555554333 4799999999999999999876643   357778888888888999999999998887777732  


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-----
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-----  257 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-----  257 (337)
                      ...-++..++..++|++.++-+.+...+..+...+|.+.+.+.+.-.+.     .+..+|..|+.++..--....     
T Consensus       135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~  209 (307)
T PF04118_consen  135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELS  209 (307)
T ss_pred             HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccc
Confidence            2234555556677899999999999999999999988754444433332     356699999888877543333     


Q ss_pred             -h-H---HH----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          258 -S-E---IT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       258 -~-~---~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                       . +   ..    ..-++..+...+.|++.-|++.+...|-.-..
T Consensus       210 ~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  210 LSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             cchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence             0 0   00    23477889999999999999999888766643

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.16  Score=41.75  Aligned_cols=63  Identities=24%  Similarity=0.281  Sum_probs=44.4

Q ss_pred             Hhhc-----cCCChhHHHHHHHHHHHHhhhh-cHHHH-HHhhhHHHHhh-hCCCCccHHHHHHHHHHHHHH
Q 019679          270 INAS-----KDRVPNIKFNVAKVLQSLIPIV-DQSVV-EKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       270 ~~~l-----~d~~~~vr~~a~~~l~~i~~~~-~~~~~-~~~i~~~l~~l-~~d~~~~vr~~a~~al~~l~~  332 (337)
                      ++++     .++++.+|...+.++-.++.+- |.+.+ ...+-|++..+ ...+++++|..+-+....+..
T Consensus       245 LQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  245 LQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            4666     3778899999999998887654 33333 34577777775 345788899888777776654

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.95  E-value=0.36  Score=45.58  Aligned_cols=212  Identities=13%  Similarity=0.105  Sum_probs=135.4

Q ss_pred             CChHHHHHHHHHhHHHHHHh--hCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc
Q 019679           41 DNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK  118 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~--~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  118 (337)
                      ++.|..-..+..+++.+.+.  ..+......+--.+..+..|..+-+|..++..+...+..-.-......++..+.++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas  540 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS  540 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence            34566656777888888776  3333333223334455667888899999999988887432222344678888899999


Q ss_pred             CCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHh--cCCchHHHHHHHHHhhHhHhh---hChhhHHHHHHHHH
Q 019679          119 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQ---LGVGFFDDKLGALC  191 (337)
Q Consensus       119 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l  191 (337)
                      +.+.+|-...+.++..+++.-...  .....+.|.+..+.  ..+++.|-..+-.++..+++.   .|+  ..+..+|.+
T Consensus       541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPsl  618 (1005)
T KOG2274|consen  541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSL  618 (1005)
T ss_pred             cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHH
Confidence            999999999999999888764322  12344666555443  123345655555566555554   343  456788988


Q ss_pred             HHHccccc----hHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhcc
Q 019679          192 MQWLKDKV----YSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAP  254 (337)
Q Consensus       192 ~~~l~d~~----~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~  254 (337)
                      ...+.-+.    ...-..++..|..+.+.-.+   +.+....+|.+.++.-+.. -..-+.+-+|+..+..
T Consensus       619 isil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  619 ISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             HHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            88887655    45566666677766665432   2345667888888776543 4455666677766643

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.91  E-value=0.42  Score=46.38  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=95.9

Q ss_pred             cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH---hCh-HHHHhhHHHHHHH
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE---FGP-DWAMQHIVPQVLE  232 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~-~~~~~~l~~~l~~  232 (337)
                      .|-.+.+|..+++.++..++.++......-++..+-..|.|.+..||..++++|..+...   .+. +.+.+.+-..+++
T Consensus       297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe  376 (1048)
T KOG2011|consen  297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE  376 (1048)
T ss_pred             ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            688899999999999999999988887778888888899999999999999999998876   111 2345556667777


Q ss_pred             hh-cCcchHHHHHHHHHHHHhc--cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHH
Q 019679          233 MI-NNPHYLYRMTILQAISLLA--PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS  290 (337)
Q Consensus       233 ~~-~~~~~~vR~~~~~~l~~l~--~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  290 (337)
                      +. .|.+..||...+..+....  ..+..+     =+-.+..++-|.++.++.+|...+..
T Consensus       377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d~-----di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  377 MADRDRNVSVRAVGLVLCLLLSSSGLLSDK-----DILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             HHhhhcchhHHHHHHHHHHHHhcccccChh-----HHHHHHHHHhccCcchHHHHHHHHHH
Confidence            77 5567888887776666552  222222     22344566778888888888765443

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.90  E-value=0.037  Score=47.42  Aligned_cols=137  Identities=18%  Similarity=0.258  Sum_probs=83.0

Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-------chHHHHHHHHHhhHhHhh--hCh
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGV  180 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~-------~~~vr~~~~~~l~~l~~~--~~~  180 (337)
                      ...+.+.+.+.+...|..|+.+|..=.   |    ...++|.+..++.+.       +...-......+..+...  +.-
T Consensus       180 f~~It~a~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l  252 (343)
T cd08050         180 FEEITEALVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL  252 (343)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence            344555556667777777776654322   2    256777777665432       233333333333334332  233


Q ss_pred             hhHHHHHHHHHHHHc----------cccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcc--hHHHHHHH
Q 019679          181 GFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH--YLYRMTIL  246 (337)
Q Consensus       181 ~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~--~~vR~~~~  246 (337)
                      +.+...++|.++.++          .+..|.+|+.|+..++.++..++..  .+...+...+...+.|+.  ...+..|+
T Consensus       253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi  332 (343)
T cd08050         253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI  332 (343)
T ss_pred             HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence            456777888888766          3466899999999999999888754  234456656666666543  45577777


Q ss_pred             HHHHHhc
Q 019679          247 QAISLLA  253 (337)
Q Consensus       247 ~~l~~l~  253 (337)
                      ..+..++
T Consensus       333 ~GL~~lG  339 (343)
T cd08050         333 VGLSALG  339 (343)
T ss_pred             HHHHHhC
Confidence            7777654

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.86  E-value=0.03  Score=48.00  Aligned_cols=133  Identities=18%  Similarity=0.236  Sum_probs=90.2

Q ss_pred             HHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc-------chHHHHHHHHHHHHhc--cccChHHHH
Q 019679          192 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-------HYLYRMTILQAISLLA--PVMGSEITC  262 (337)
Q Consensus       192 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~-------~~~vR~~~~~~l~~l~--~~~~~~~~~  262 (337)
                      .+.+.+.+...|..|+..|..       +...+.++|.+..++.+.       +...-...++.+.+|.  ..+..+.+.
T Consensus       184 t~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Yl  256 (343)
T cd08050         184 TEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYL  256 (343)
T ss_pred             HHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence            334445677778887777652       333567888888888653       4444445556666664  344566777


Q ss_pred             hhHHHHHHhhc----------cCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCC-c-cHHHHHHHHHH
Q 019679          263 SQLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD-V-DVRFFATQALQ  328 (337)
Q Consensus       263 ~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~-~-~vr~~a~~al~  328 (337)
                      ..++|.++.++          .+.++.+|.-|+..++.++..++..  .....+...+.+.+-|+. + ...+-|..+|.
T Consensus       257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~  336 (343)
T cd08050         257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS  336 (343)
T ss_pred             HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence            78999988776          3566899999999999999998865  334556656666444433 3 34788888887


Q ss_pred             HHH
Q 019679          329 SKD  331 (337)
Q Consensus       329 ~l~  331 (337)
                      .+.
T Consensus       337 ~lG  339 (343)
T cd08050         337 ALG  339 (343)
T ss_pred             HhC
Confidence            765

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.85  E-value=0.18  Score=40.71  Aligned_cols=199  Identities=16%  Similarity=0.161  Sum_probs=118.7

Q ss_pred             HHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679          111 PIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  189 (337)
Q Consensus       111 ~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  189 (337)
                      |.+.. +-+.+++.+....++++..++..-.  ...+.++..+..+.+..+...+..+...+..+-..-+..  .+.+-+
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~   78 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQP   78 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHH
Confidence            44443 6667889999999999999887632  334566677777777766666666666666555443221  133333


Q ss_pred             HHHH---------HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChH
Q 019679          190 LCMQ---------WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSE  259 (337)
Q Consensus       190 ~l~~---------~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~  259 (337)
                      .+..         .-++..++...+...++..++...+.  .-..+++.+..++ .+.+...+..+++++..+++.---+
T Consensus        79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd  156 (234)
T PF12530_consen   79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD  156 (234)
T ss_pred             HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc
Confidence            3332         11345667777777788888877643  4556899999999 6777888888999998887322111


Q ss_pred             HHHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhh-h---cHHHHHHhhhHHHHhhhCCCCc
Q 019679          260 ITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPI-V---DQSVVEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       260 ~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~-~---~~~~~~~~i~~~l~~l~~d~~~  317 (337)
                       +. .....+.+-+ .|..+.|-...+..+..+... .   ..+.+...++..+-++....+.
T Consensus       157 -~~-s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  157 -FY-SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             -HH-HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence             11 1222222222 344455554444333333211 1   1224566788888887776664

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.84  E-value=0.032  Score=41.47  Aligned_cols=142  Identities=19%  Similarity=0.175  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHH
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH   84 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~   84 (337)
                      +.||...+.++..++...-|+. |+.+++.+.+.++. ++......+..|..+.+.+...            .-.+....
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~------------~~~~~~~~   67 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF------------RRSSLSQE   67 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS------------HCCHSHHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh------------hchhhhHH
Confidence            3589999999999999987776 68899999999876 5666667777776665543210            00111222


Q ss_pred             HHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC----hhHHHHHHHhHHHhHhhhchhhHHh-hHHHHHHHHhcCC
Q 019679           85 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAEDR  159 (337)
Q Consensus        85 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~-~llp~l~~~~~d~  159 (337)
                      .|...-+.+..-         ...++..+.+.+....    .++...+++++....+.+..+.+.+ .+++.+.+.++++
T Consensus        68 r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~  138 (148)
T PF08389_consen   68 RRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSP  138 (148)
T ss_dssp             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCH
Confidence            333333333322         1233444444443322    6777777777777777666655443 4777777776544


Q ss_pred             chHHHHHHHHHh
Q 019679          160 HWRVRLAIIEYI  171 (337)
Q Consensus       160 ~~~vr~~~~~~l  171 (337)
                      +-  +..+++++
T Consensus       139 ~~--~~~A~~cl  148 (148)
T PF08389_consen  139 EL--REAAAECL  148 (148)
T ss_dssp             CC--HHHHHHHH
T ss_pred             HH--HHHHHHhC
Confidence            43  55555543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.81  E-value=0.12  Score=44.48  Aligned_cols=49  Identities=10%  Similarity=0.045  Sum_probs=32.1

Q ss_pred             hHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc
Q 019679          225 HIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK  274 (337)
Q Consensus       225 ~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  274 (337)
                      .+-..+..++-++  .|.+|..+...+..+....+.. +...++..+.+.+.
T Consensus       204 ~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l~  254 (339)
T PF12074_consen  204 AWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWLS  254 (339)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence            3455566666677  7999999998888876544433 44455566655553

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.76  E-value=0.4  Score=43.26  Aligned_cols=143  Identities=10%  Similarity=0.010  Sum_probs=69.4

Q ss_pred             HHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhC-hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679          187 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  264 (337)
Q Consensus       187 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~  264 (337)
                      ++..+..... ..+...-+.++..+..+..+-. |......++..++...+..  .....+-.++..+............
T Consensus       177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i~~  254 (464)
T PF11864_consen  177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAIRT  254 (464)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHHHH
Confidence            4444444332 2333444666777776665211 2222344555555554433  3334455556666543322222233


Q ss_pred             HHHHHH--hhccCCChhHHHHHHHHHHHHhhhhcHHHH------HHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          265 LLPVVI--NASKDRVPNIKFNVAKVLQSLIPIVDQSVV------EKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       265 l~~~l~--~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      +..++.  .--..++..+-++|+..++.+.-..+++.+      ...++|.|...++-+++.|-......+..+.
T Consensus       255 L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  255 LCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            333331  111223345556778777777655533211      1237777777766666655555555555544

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.65  Score=44.32  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=72.8

Q ss_pred             HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          223 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       223 ~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ...++.....++.+++.+.|..++..+..-...+..  .   +......|.+...+.++++.+-..|++++.++++..|.
T Consensus       801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD  880 (1014)
T KOG4524|consen  801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD  880 (1014)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence            455777778888999999999999888765443332  1   12335677888889999999999999999999998885


Q ss_pred             ---HHHHHhhhHHHHhhhCCCC
Q 019679          298 ---SVVEKSIRPCLVELSEDPD  316 (337)
Q Consensus       298 ---~~~~~~i~~~l~~l~~d~~  316 (337)
                         ..+.+.++|.++.++.|..
T Consensus       881 Fv~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  881 FVASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence               3566889999998887643

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.58  Score=43.39  Aligned_cols=311  Identities=11%  Similarity=0.047  Sum_probs=161.1

Q ss_pred             CCcccchHHHHHHhcC-----C---ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhHHhcCCCcHHHHHHHHH
Q 019679           25 EPTRSDVVPAYVRLLR-----D---NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHVRSALAT   91 (337)
Q Consensus        25 ~~~~~~l~~~l~~~~~-----d---~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~   91 (337)
                      +.+...+++++...+.     +   .++.-.+.|+..++.+.+.+++.     .+.+.+++.+....+++.--.|.-+|+
T Consensus       403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace  482 (970)
T COG5656         403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE  482 (970)
T ss_pred             hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence            3334567787777772     1   24566777888888887754432     344456777777888999999999999


Q ss_pred             HHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHH---hcCCch----HH
Q 019679           92 VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVEL---AEDRHW----RV  163 (337)
Q Consensus        92 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~---~~d~~~----~v  163 (337)
                      .+..+..-+.+....-.+.....+++++++-.|+..|+-++.-+...-. .+.+..++.+.+.++   .++-+.    .+
T Consensus       483 ~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         483 FISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            9999976666554556677788889999889999999999987766543 233434444444443   333222    23


Q ss_pred             HHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHcccc---chH--HHHHH----HHHHHHHHHHhChH-----HHHhhH
Q 019679          164 RLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDK---VYS--IRDAA----ANNVKRLAEEFGPD-----WAMQHI  226 (337)
Q Consensus       164 r~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~---~~~--vr~~a----~~~l~~~~~~~~~~-----~~~~~l  226 (337)
                      ....++.++.=.+.++++..   ..+++.+...++..+   ...  -++.+    ++++..+.-.+.+.     .....+
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl  642 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL  642 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            33333333322222333321   122333333333322   111  12222    23333333233221     122334


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCCh-hHHHHHHHHHHHHhhhhcH-----H
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQ-----S  298 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~~-----~  298 (337)
                      .|.+.=.+.+.....=.-++..+....- ...+  ...-.++..+.+++.++.. .--..+.-++..+...=+.     .
T Consensus       643 ypvi~Filkn~i~dfy~Ea~dildg~tf-~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~  721 (970)
T COG5656         643 YPVISFILKNEISDFYQEALDILDGYTF-MSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG  721 (970)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhhhH-HHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence            4544444444332222223333332110 0011  1233455566666777664 4445666677776533211     1


Q ss_pred             HHHHhhhHHHHhhhCCCCc--cHHHHHHHHHHHHHHhhhC
Q 019679          299 VVEKSIRPCLVELSEDPDV--DVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       299 ~~~~~i~~~l~~l~~d~~~--~vr~~a~~al~~l~~~~~~  336 (337)
                      .+...+.......+...+.  +=+..+++.+..++-.+++
T Consensus       722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd  761 (970)
T COG5656         722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRD  761 (970)
T ss_pred             chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccc
Confidence            2334444444444333222  4455677776666655443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.32  Score=40.12  Aligned_cols=255  Identities=17%  Similarity=0.195  Sum_probs=130.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh-HHh
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIE  107 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~  107 (337)
                      +-.+.+++.+.+|.||++|+..+..+... +-..   .....++-+.++..|..+  -.-++.++.+++...+-.. ..+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~   81 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ   81 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence            44566888899999999999877766544 2221   223467778888888887  4556677777775333111 122


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---------HhhHHHHHHHHhcCCchHHH---HHHHHHhhHhH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---------SQSLLPAIVELAEDRHWRVR---LAIIEYIPLLA  175 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------~~~llp~l~~~~~d~~~~vr---~~~~~~l~~l~  175 (337)
                      .++..+...+-|.....-...+..+.++.+.-+.-..         ...++.....+ -|++..-+   ...+..+..+.
T Consensus        82 ~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~-~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAF-CDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHH-hCcccccccchhHHHHHHHHHh
Confidence            3445555555666555555555566655544221000         01122222222 22222211   11223333343


Q ss_pred             hhh-ChhhHH-HH--HHHHHHHHccccchHHHHH-HHHHHHHHHHHhChH---HH---HhhHHHHHHH------------
Q 019679          176 SQL-GVGFFD-DK--LGALCMQWLKDKVYSIRDA-AANNVKRLAEEFGPD---WA---MQHIVPQVLE------------  232 (337)
Q Consensus       176 ~~~-~~~~~~-~~--l~~~l~~~l~d~~~~vr~~-a~~~l~~~~~~~~~~---~~---~~~l~~~l~~------------  232 (337)
                      +.- |...+. ++  ....+..+-+ ....||.. .+..|...+  |+..   +.   ...++|.++-            
T Consensus       161 ~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~c--Fd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  161 QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCC--FDAKLHEVLLDESINLLPAILLPLAGPEELSEED  237 (353)
T ss_pred             hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhh--ccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence            332 222211 11  1222233333 45556543 444444422  1111   00   1123333322            


Q ss_pred             ---------hhc-----CcchHHHHHHHHHHHHhc-cccChHHHHh-hHHHHHHhhc-cCCChhHHHHHHHHHHHHhh
Q 019679          233 ---------MIN-----NPHYLYRMTILQAISLLA-PVMGSEITCS-QLLPVVINAS-KDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       233 ---------~~~-----~~~~~vR~~~~~~l~~l~-~~~~~~~~~~-~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~  293 (337)
                               .+.     +++..+|...++++-.++ +.-|.+.++. ...|++..+- ..+++.+|.++-+....+..
T Consensus       238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                     222     256889999999999985 4456666655 4666666664 34557888877666666654

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.60  E-value=0.41  Score=41.27  Aligned_cols=218  Identities=15%  Similarity=0.060  Sum_probs=107.5

Q ss_pred             HHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHH
Q 019679           86 RSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR  164 (337)
Q Consensus        86 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr  164 (337)
                      |...++.+..+.. .+   ....+...+..++. +.++......+.++..-...++ ..+.+.++..+.+.++|+...+|
T Consensus         4 r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~-~~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    4 RVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLS-SELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             HHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHhcCCCCcHH
Confidence            4555555555554 21   33444455555443 4566667777777766665552 22335677777777777777788


Q ss_pred             HHHHHHhhHhHh---hhChhhHHHHHHHHHHHHcc----ccchHHH----HHHHHHHH----HHHH-----------HhC
Q 019679          165 LAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLK----DKVYSIR----DAAANNVK----RLAE-----------EFG  218 (337)
Q Consensus       165 ~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l~----d~~~~vr----~~a~~~l~----~~~~-----------~~~  218 (337)
                      ...+..++....   ......+...++|.+.+.++    .+.+...    .+++-.+.    .+..           ..+
T Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  158 (339)
T PF12074_consen   79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALD  158 (339)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccC
Confidence            887777777665   11112233345555544443    2222211    12222222    0000           000


Q ss_pred             hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCC--ChhHHHHHHHHHHHHhh
Q 019679          219 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       219 ~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~  293 (337)
                      ++. .--+-+.+...+.+  ...-.-.++++..+...+...   .....+...+..++..+  .++||+.|..++..+..
T Consensus       159 ~kp-s~ll~~kvyskl~~--~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~  235 (339)
T PF12074_consen  159 PKP-SFLLSEKVYSKLAS--EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA  235 (339)
T ss_pred             CCc-chhcCHHHHhccCC--HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            000 00011233333221  112222333344443322211   11344566666666666  79999999999999876


Q ss_pred             hhcHHHHHHhhhHHHHhhh
Q 019679          294 IVDQSVVEKSIRPCLVELS  312 (337)
Q Consensus       294 ~~~~~~~~~~i~~~l~~l~  312 (337)
                      ..+.. +...++..+.+.+
T Consensus       236 ~~~~~-l~~~li~~l~~~l  253 (339)
T PF12074_consen  236 SNPEL-LSKSLISGLWKWL  253 (339)
T ss_pred             hChHH-HHHHHHHHHHHHH
Confidence            65543 4455555555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.38  Score=40.54  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=114.6

Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHHH--HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh---hHHhhhHHHHHH
Q 019679           41 DNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLS  115 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~  115 (337)
                      ..+.+-|..++..|..+++.++...  +....++.+...+++++..+|..|+..++.....-++-   ......++.+..
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            4567889999999999999887652  22234444545999999999999999999998765532   122334555555


Q ss_pred             hhc-CCChhHHHHHHHhHHHhHhhhch--hhH-HhhHHHHHHHHhcC--CchHHHHHHHHHhhHhHhhhCh--hhHHHHH
Q 019679          116 LLK-DEFPDVRLNIISKLDQVNQVIGI--DLL-SQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV--GFFDDKL  187 (337)
Q Consensus       116 ~l~-d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l  187 (337)
                      .+. |....+|..|+-++..+.....+  +.+ .-.=+..+.+..++  .+.+.+.-++..+..+.+.-..  +......
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~  253 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG  253 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence            554 55678999999999988877543  111 11113345555555  5667777788888877665321  1222222


Q ss_pred             HH-HHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679          188 GA-LCMQWLKDKVYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       188 ~~-~l~~~l~d~~~~vr~~a~~~l~~~~~~~  217 (337)
                      .+ .+..+.....+++++.++.++-.....+
T Consensus       254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  254 FQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             hhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            22 3334555667788888888776665544

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.53  Score=42.07  Aligned_cols=196  Identities=13%  Similarity=0.146  Sum_probs=116.6

Q ss_pred             cCCChHHHHHHHHHhHHHHHHhhCHHH--HHHh---hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh---HHhhhH
Q 019679           39 LRDNEAEVRIAAAGKVTKICRILNPEL--AIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLL  110 (337)
Q Consensus        39 ~~d~~~~vR~~a~~~l~~~~~~~~~~~--~~~~---ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~  110 (337)
                      ....+.+-+++..+.+..+++......  ..+.   ++..+.-....++++|-+........+.+..-...   ...-.-
T Consensus       256 ~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~fr  335 (559)
T KOG2081|consen  256 MAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFR  335 (559)
T ss_pred             hcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhH
Confidence            344556667777777777776542221  0112   22333334566777777777777777765432211   112223


Q ss_pred             HHHHHhh-------------------cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679          111 PIFLSLL-------------------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  171 (337)
Q Consensus       111 ~~l~~~l-------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l  171 (337)
                      |++.+++                   .++..+.|..+...+..+.-.+|.+.-.+.+.-.+.+  +..+|+.-++++..+
T Consensus       336 py~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l  413 (559)
T KOG2081|consen  336 PYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFIL  413 (559)
T ss_pred             HHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence            4444433                   1122467888888888888888876554444444433  577899999999999


Q ss_pred             hHhHhhhChhhHHHHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChHH-HHhhHHHHHHHhhcCcc
Q 019679          172 PLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW-AMQHIVPQVLEMINNPH  238 (337)
Q Consensus       172 ~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~~~~  238 (337)
                      ..+++...++.  +.++|-+++++.  +....+|..++..+|.+.+.+..+. ..+.++..+...+....
T Consensus       414 ~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~  481 (559)
T KOG2081|consen  414 RAVAKNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR  481 (559)
T ss_pred             HHHhccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc
Confidence            99999886653  335555555443  2344599999999999988875432 23344555555555443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.71  Score=43.16  Aligned_cols=276  Identities=14%  Similarity=0.101  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC-cHHH
Q 019679           12 ANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHV   85 (337)
Q Consensus        12 ~~~l~~~~~~~~~~~-----~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~-~~~v   85 (337)
                      -.++|..+..+....     ..+.++|.+. .-.++.--+|+..+..++...+.--+.+....+...+.++++|. +-.|
T Consensus       465 Yaa~g~~a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV  543 (978)
T KOG1993|consen  465 YAAFGLAAYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVV  543 (978)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCcccccee
Confidence            344555554444322     2235677765 22345567899999999988876555566666667778899998 6689


Q ss_pred             HHHHHHHHHhcCcccC--hhhHH---hhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchh--hHHhh---HHHHHHH
Q 019679           86 RSALATVIMGMAPILG--KDATI---EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGID--LLSQS---LLPAIVE  154 (337)
Q Consensus        86 r~~a~~~l~~l~~~~~--~~~~~---~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~---llp~l~~  154 (337)
                      |.+++.++..+..-+.  ++.+.   +.+...+.+++.. ..-+.|...+..++.+....++.  .....   ++|.+.+
T Consensus       544 ~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe  623 (978)
T KOG1993|consen  544 RLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWE  623 (978)
T ss_pred             ehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            9999999998876433  22221   2222333344433 33567777888887777766532  22233   4444444


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchH---HHHHHHHHHHHHHHHh---ChHHHHhhH
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYS---IRDAAANNVKRLAEEF---GPDWAMQHI  226 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~---~~~~~~~~l  226 (337)
                      -.+ +..-.|.+.+..+..++..+|...  +.+.+.|++-....=.+++   .-+.+....+.+....   .++  .-.+
T Consensus       624 ~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~--ll~L  700 (978)
T KOG1993|consen  624 ESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPE--LLLL  700 (978)
T ss_pred             hhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHH--HHHH
Confidence            433 556799999999999999987654  5566777764433323332   2333333333333222   222  2246


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                      +|++...+.-.....| +++..+.+-.-.-+.. |.+...-.+.+.+.+--..||.....++-.+.+
T Consensus       701 ~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkive  765 (978)
T KOG1993|consen  701 FPHLLYIIEQSTENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVE  765 (978)
T ss_pred             HHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6777666664444444 3444444433222333 333333333344444444566666555544443

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=96.51  E-value=0.15  Score=39.82  Aligned_cols=167  Identities=14%  Similarity=0.120  Sum_probs=86.8

Q ss_pred             chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679          160 HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      .......++..++.+.+.+|...  ....++..+.++-.+++-..|+.+-.+++.....+|++.+.. ++|.-.+. .+.
T Consensus        13 y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~   90 (198)
T PF08161_consen   13 YQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADD   90 (198)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCc
Confidence            33444555555666666665432  223344444455556667788888888888888888886543 44432221 111


Q ss_pred             chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc---C---CChhHHHHHHHH--------HHHHhhhhc--HHHHH
Q 019679          238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK---D---RVPNIKFNVAKV--------LQSLIPIVD--QSVVE  301 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d---~~~~vr~~a~~~--------l~~i~~~~~--~~~~~  301 (337)
                      ...-|.=.+-.+..-.......+|.++++|....+-+   +   ....+.....++        |..++..-.  .+.+ 
T Consensus        91 ~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-  169 (198)
T PF08161_consen   91 SQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-  169 (198)
T ss_pred             CCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-
Confidence            1111211222222223334456778888887654431   1   111222211111        111221100  0123 


Q ss_pred             HhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          302 KSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      ..+-..|.+.+.| .+++|...++||..+
T Consensus       170 ~~~a~~L~~~L~~-~~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  170 PSFAKLLGNALYD-QPDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence            5666777777776 588999999999876

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.51  E-value=0.4  Score=44.66  Aligned_cols=170  Identities=12%  Similarity=0.123  Sum_probs=103.6

Q ss_pred             HhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc-hHHHHHHHHHhhHhHhhhChhhH
Q 019679          106 IEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFF  183 (337)
Q Consensus       106 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~  183 (337)
                      .++-++-++.-+.. .-.+=|+.|+.++..+++.+..+.....+-|.+..+-.|.. +..-..                 
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~-----------------   82 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKY-----------------   82 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHH-----------------
Confidence            34445555554443 34688999999999999988776665555555544444432 222222                 


Q ss_pred             HHHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHhChHHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679          184 DDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  261 (337)
Q Consensus       184 ~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~  261 (337)
                         .++.+...+ .|+++.|-+..- --..++..+....+ .+..+..++..+...+++||..++..+..+...-|.+.-
T Consensus        83 ---~LdTl~il~~~dd~~~v~dds~-qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q  158 (970)
T KOG0946|consen   83 ---ALDTLLILTSHDDSPEVMDDST-QSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ  158 (970)
T ss_pred             ---HHHHHHHHHhcCcchhhcccch-hhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence               233333322 233344433222 11112222211111 345677888888888999999999999999877776532


Q ss_pred             -----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          262 -----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       262 -----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                           .+.-+.-+..++.|....+|..++-.|..+.+..+
T Consensus       159 ~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~  198 (970)
T KOG0946|consen  159 DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS  198 (970)
T ss_pred             HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence                 23445667888899999999999998888876544

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.41  E-value=1.2  Score=44.67  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHhCC----CCcccchHHHHHHhc-----CCChHHHHHHHHHhHHHHHHhhCHH-----H----HHHh
Q 019679            8 RYMVANQLYELCEAVGP----EPTRSDVVPAYVRLL-----RDNEAEVRIAAAGKVTKICRILNPE-----L----AIQH   69 (337)
Q Consensus         8 R~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~-----~d~~~~vR~~a~~~l~~~~~~~~~~-----~----~~~~   69 (337)
                      .-..++.|..++..+..    ......+.|....++     .++|..||...+-|+..+...+.|+     .    +.+.
T Consensus        19 ~~ell~rLk~l~~~l~~~~qd~~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~   98 (1266)
T KOG1525|consen   19 KDELLKRLKKLANCLASLDQDNLDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQL   98 (1266)
T ss_pred             HHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence            34455556666555432    233456777776665     4578899999999999999887665     1    2222


Q ss_pred             hhHhhHHhcCCCcH--HHHHHHHHHHHhcCc-----ccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh
Q 019679           70 ILPCVKELSSDSSQ--HVRSALATVIMGMAP-----ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  142 (337)
Q Consensus        70 ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~-----~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  142 (337)
                      ++..+..+..-.+|  .-+...++.+..+..     ....+.....+...+..+..+..+.--..-..-+..+...  .+
T Consensus        99 ~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e--~d  176 (1266)
T KOG1525|consen   99 ILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITE--ED  176 (1266)
T ss_pred             HHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh--hc
Confidence            33333323222333  444455555544331     1111222334444555555554443322211111122111  12


Q ss_pred             hHHhhHHHHHH----HHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-ccc--chHHHHHHHHHHHHHHH
Q 019679          143 LLSQSLLPAIV----ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDK--VYSIRDAAANNVKRLAE  215 (337)
Q Consensus       143 ~~~~~llp~l~----~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~--~~~vr~~a~~~l~~~~~  215 (337)
                      .....++..+.    +--.+....-+..+-..+...+......     +-..+...+ .+.  ...++.-.-..+-.+..
T Consensus       177 ~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-----i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~  251 (1266)
T KOG1525|consen  177 TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-----IANFLNSCLTEYKSRQSSLKIKYHELILELWR  251 (1266)
T ss_pred             cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-----HHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence            22223333332    2223333344444444444444333221     222222211 121  12223332333333332


Q ss_pred             HhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH--HhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          216 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       216 ~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                      .. ++ ..-.++|.+..-+...+-.+|..|...+|.+...-+...+  .+.++..++..+.|.+.+||.++++....+.-
T Consensus       252 ~~-p~-ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~  329 (1266)
T KOG1525|consen  252 IA-PQ-LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL  329 (1266)
T ss_pred             hh-HH-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence            21 22 2446889998888989999999999999998654433322  45678888889999999999999998887754


Q ss_pred             h
Q 019679          294 I  294 (337)
Q Consensus       294 ~  294 (337)
                      .
T Consensus       330 ~  330 (1266)
T KOG1525|consen  330 N  330 (1266)
T ss_pred             c
Confidence            4

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.39  E-value=0.25  Score=43.92  Aligned_cols=139  Identities=13%  Similarity=0.162  Sum_probs=91.9

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC--------chHHHHHHHHHhhHhHhhh--
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQL--  178 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~--------~~~vr~~~~~~l~~l~~~~--  178 (337)
                      ...-+.+.+.+.++..|..|+++|..=..       .+.++|.+..++.+.        +-..-.........+.++-  
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~TDsG-------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLETDSG-------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhccCcc-------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            34455666667889999999988765332       267888888777542        1112222222222332221  


Q ss_pred             ChhhHHHHHHHHHHHHc----------cccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCc--chHHHHH
Q 019679          179 GVGFFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMT  244 (337)
Q Consensus       179 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~--~~~vR~~  244 (337)
                      .-+.+..+++|.++.++          .|..|.+|.-|+..+..++..++...  ....++..+...+.|+  .+..+..
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence            23446678888888765          36789999999999999999997542  3445666667777775  4888888


Q ss_pred             HHHHHHHhcc
Q 019679          245 ILQAISLLAP  254 (337)
Q Consensus       245 ~~~~l~~l~~  254 (337)
                      ++..+..+..
T Consensus       361 ai~gL~~lg~  370 (576)
T KOG2549|consen  361 AIAGLSELGH  370 (576)
T ss_pred             HHHHHHHhhh
Confidence            8888887654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=96.32  E-value=0.12  Score=43.16  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=76.8

Q ss_pred             HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh---HH-----hhhHHHHHHhhc--------CCChhHHHHH
Q 019679           65 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TI-----EQLLPIFLSLLK--------DEFPDVRLNI  128 (337)
Q Consensus        65 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~vr~~a  128 (337)
                      .....++|.+..++.|.++.+|..++.++..+....+...   ..     +.+.+.+..++.        +++..+-..+
T Consensus       115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a  194 (282)
T PF10521_consen  115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA  194 (282)
T ss_pred             HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence            3445688989999999999999999999999887666444   21     233334444443        5556666677


Q ss_pred             HHhHHHhHhhhch-------hhHHhh----HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc
Q 019679          129 ISKLDQVNQVIGI-------DLLSQS----LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL  195 (337)
Q Consensus       129 ~~~l~~l~~~~~~-------~~~~~~----llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l  195 (337)
                      ..++-.+.+....       ..+.+.    ++..+.-..+-++..++...++.+..+...+|...  +...++|.+.+.+
T Consensus       195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l  274 (282)
T PF10521_consen  195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL  274 (282)
T ss_pred             HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            7777666554210       011111    11111111111235566666666666666655443  4455666666665


Q ss_pred             ccc
Q 019679          196 KDK  198 (337)
Q Consensus       196 ~d~  198 (337)
                      +++
T Consensus       275 ~np  277 (282)
T PF10521_consen  275 ENP  277 (282)
T ss_pred             cCC
Confidence            554

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.76  Score=41.14  Aligned_cols=208  Identities=15%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCc-----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---H----HHHh--
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPT-----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---L----AIQH--   69 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~----~~~~--   69 (337)
                      +..-+.+.++.+..++..+-....     .-.++..+.-....++.+|-+++....-.+.+.+...   .    +..+  
T Consensus       260 d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~  339 (559)
T KOG2081|consen  260 DLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFL  339 (559)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHH
Confidence            344566777777777765532111     1134444555557788888888888877777654321   1    1122  


Q ss_pred             -hhHhhHHhc----------C--CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679           70 -ILPCVKELS----------S--DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  136 (337)
Q Consensus        70 -ll~~l~~l~----------~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  136 (337)
                       ++..+..-+          +  ++....|......+..++..+|.+.....+.-.+.+  ..+.++.-++++-.+..++
T Consensus       340 rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~  417 (559)
T KOG2081|consen  340 RLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVA  417 (559)
T ss_pred             HHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHh
Confidence             222222211          1  223478888888888888888876544433333333  3567899999999999999


Q ss_pred             hhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679          137 QVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRL  213 (337)
Q Consensus       137 ~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  213 (337)
                      +.+.++.  +.++|.+.+.+-  +....+|..++..++.+.+...... +.+-++..+.+.+.+..  ...+++.++..+
T Consensus       418 ~~~~~~e--~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i  493 (559)
T KOG2081|consen  418 KNVSPEE--NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRI  493 (559)
T ss_pred             ccCCccc--cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHH
Confidence            9887643  456666666553  2334599999999999998885543 34445555566666554  444455555555


Q ss_pred             HHHh
Q 019679          214 AEEF  217 (337)
Q Consensus       214 ~~~~  217 (337)
                      +...
T Consensus       494 ~~~c  497 (559)
T KOG2081|consen  494 CSAC  497 (559)
T ss_pred             HHHH
Confidence            5443

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=96.20  E-value=0.025  Score=38.07  Aligned_cols=70  Identities=20%  Similarity=0.336  Sum_probs=51.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTKICRILNPELAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~--~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~   75 (337)
                      |..|.+|..+++.++.++..++...  ..+.+...+.+.+.|++  ......|+..|..++.    +.+...++|.+.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~----~~vr~~ilP~l~   90 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP----EAVRALILPNLK   90 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH----HHHHHhhccCcC
Confidence            6789999999999999999988643  35678888888888764  5577788888876643    444455666543

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.17  E-value=0.41  Score=42.69  Aligned_cols=132  Identities=15%  Similarity=0.159  Sum_probs=88.0

Q ss_pred             HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc--------chHHHHHHHHHHHHhcc--ccChHHHHh
Q 019679          194 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAP--VMGSEITCS  263 (337)
Q Consensus       194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~vR~~~~~~l~~l~~--~~~~~~~~~  263 (337)
                      .+.+.+...|..|+.+|..       +.-.+.++|.+..++.+.        +.+.-...++..-+|..  .+-.+.|..
T Consensus       215 a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh  287 (576)
T KOG2549|consen  215 ACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH  287 (576)
T ss_pred             HHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence            3344777788888888763       333567888888888752        33344445555555543  334566777


Q ss_pred             hHHHHHHhhc----------cCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCC--CccHHHHHHHHHHH
Q 019679          264 QLLPVVINAS----------KDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDP--DVDVRFFATQALQS  329 (337)
Q Consensus       264 ~l~~~l~~~l----------~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~  329 (337)
                      .++|.++.++          .|.++.+|.-|+..+..+++.++..+  ....+...+.+.+.|.  .+...+-++..|..
T Consensus       288 ~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~  367 (576)
T KOG2549|consen  288 QLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE  367 (576)
T ss_pred             HHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence            8888887665          46678899999999999998888653  3345666666655553  56677788877776


Q ss_pred             HHH
Q 019679          330 KDQ  332 (337)
Q Consensus       330 l~~  332 (337)
                      +..
T Consensus       368 lg~  370 (576)
T KOG2549|consen  368 LGH  370 (576)
T ss_pred             hhh
Confidence            643

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=96.12  E-value=1.1  Score=41.09  Aligned_cols=269  Identities=10%  Similarity=0.103  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcCCCcHHHH
Q 019679           10 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSSDSSQHVR   86 (337)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr   86 (337)
                      ..+..+..+...+++. .++++-..+.+-+-.++.-....+.+...-++.+-..+.   +...+...++.+..+.-..  
T Consensus       247 ~vl~~Lctfi~~~~~s-~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik~lp~~~~~~--  323 (559)
T PF14868_consen  247 HVLVHLCTFIASLSPS-AFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIKSLPSSSYQL--  323 (559)
T ss_pred             HHHHHHHHHHHhCCHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHcCCcchhH--
Confidence            4566777777666666 578888888888888999999999999888887655553   3344455555555333322  


Q ss_pred             HHHHHHHHhcCcccChhhHHhhhH------------HHHHHhhcC-CChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHH
Q 019679           87 SALATVIMGMAPILGKDATIEQLL------------PIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  153 (337)
Q Consensus        87 ~~a~~~l~~l~~~~~~~~~~~~l~------------~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~  153 (337)
                      ......++++.....++.. ..++            +.+..+.-+ -.+..|..+...+...+            ...+.
T Consensus       324 ~~L~~LL~Rl~~~m~~~~q-~~~v~~f~p~~~~~n~~lw~~~~~~~L~~~lr~~~~~~i~~~~------------~~~~~  390 (559)
T PF14868_consen  324 INLSILLRRLFFLMAPDHQ-SEFVQDFSPSAETENLLLWEGFPLNALSDELRKQIVQEIFTLC------------FAFCQ  390 (559)
T ss_pred             hhHHHHHHHHHHhcCHHHH-HHHHHhcCccccccchHHHHhccHHhCCHHHHHHHHHHHHHHH------------HHHHH
Confidence            2244445554443332211 1111            111111111 12233333332222211            11111


Q ss_pred             HHhc--CCchHHHHHHHHHhhHhHhhh---Chhh---HHHHHHHHHH---HHccc----cchHHHH---HHHHHHHHHHH
Q 019679          154 ELAE--DRHWRVRLAIIEYIPLLASQL---GVGF---FDDKLGALCM---QWLKD----KVYSIRD---AAANNVKRLAE  215 (337)
Q Consensus       154 ~~~~--d~~~~vr~~~~~~l~~l~~~~---~~~~---~~~~l~~~l~---~~l~d----~~~~vr~---~a~~~l~~~~~  215 (337)
                      +..+  ..++..=......+..+...+   +...   -...++.++.   ..++.    ..+.+..   ..+..++.+.+
T Consensus       391 ~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~  470 (559)
T PF14868_consen  391 KWLSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQ  470 (559)
T ss_pred             HhcccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHH
Confidence            1111  111111111111111111111   1000   0011222221   11110    1122222   22333344444


Q ss_pred             HhChHHHHhhHHHHHHHhh-cCcchHHHHHHHHHHHHhccccChHHHHhhHHH----HHHhhccCCChhHHHHHHHHHHH
Q 019679          216 EFGPDWAMQHIVPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLP----VVINASKDRVPNIKFNVAKVLQS  290 (337)
Q Consensus       216 ~~~~~~~~~~l~~~l~~~~-~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~----~l~~~l~d~~~~vr~~a~~~l~~  290 (337)
                      .+.++. ..+++-.+...+ .++...+|.+.+.+++.+++.+-.+...+.+.|    .+-.+|.|+++.++..|+.+++.
T Consensus       471 ~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~  549 (559)
T PF14868_consen  471 LLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQ  549 (559)
T ss_pred             hcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            444443 334555556666 455667888999999998877665544444444    44556789999999999999888


Q ss_pred             Hhhhh
Q 019679          291 LIPIV  295 (337)
Q Consensus       291 i~~~~  295 (337)
                      +++.-
T Consensus       550 FAe~T  554 (559)
T PF14868_consen  550 FAERT  554 (559)
T ss_pred             HhccC
Confidence            87643

>PF05536 Neurochondrin: Neurochondrin

Probab=96.12  E-value=1.1  Score=41.20  Aligned_cols=186  Identities=20%  Similarity=0.257  Sum_probs=127.1

Q ss_pred             HHHHHhcCC-------ChHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhHHhcCCCcH-HHHHHHHHHHHhcCcc
Q 019679           33 PAYVRLLRD-------NEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPI   99 (337)
Q Consensus        33 ~~l~~~~~d-------~~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~   99 (337)
                      +++.+++..       +....+..|+..|..|+.  +++     .+. .-+|.+.+.+...+. .+-..+.++|..++..
T Consensus        53 ~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~--~~~~a~~~~~~-~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~  129 (543)
T PF05536_consen   53 KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR--DPELASSPQMV-SRIPLLLEILSSSSDLETVDDALQCLLAIASS  129 (543)
T ss_pred             hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC--ChhhhcCHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC
Confidence            445555543       446788888888888876  333     222 346777777766555 8888899999888843


Q ss_pred             c-Chhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH------HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679          100 L-GKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYI  171 (337)
Q Consensus       100 ~-~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l  171 (337)
                      - |.+. .....++.+.+.+.+ .+.....++..+..+....+.+.+      ...+++.+...........+...++.+
T Consensus       130 ~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L  208 (543)
T PF05536_consen  130 PEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL  208 (543)
T ss_pred             cHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence            2 2222 234567778777766 677888899998888877664322      235667777766666666777778888


Q ss_pred             hHhHhhhCh--------hhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHH
Q 019679          172 PLLASQLGV--------GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA  222 (337)
Q Consensus       172 ~~l~~~~~~--------~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~  222 (337)
                      +.+....+.        ..+...+...+...+.. ..+.-|..+....+.+.+.+|.+|.
T Consensus       209 ~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl  268 (543)
T PF05536_consen  209 SAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL  268 (543)
T ss_pred             HHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence            877666531        22455566666666655 5678899999999999999998875

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=96.07  E-value=0.42  Score=50.75  Aligned_cols=250  Identities=14%  Similarity=0.173  Sum_probs=151.9

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCH--------HHHHHhhhHhh-HHhcCCCcHHHHHHHHHHHHhcCcccChhhH
Q 019679           35 YVRLLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCV-KELSSDSSQHVRSALATVIMGMAPILGKDAT  105 (337)
Q Consensus        35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--------~~~~~~ll~~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  105 (337)
                      +..++...++++|..+..++..+......        -...+.++..+ .-...|+++.+|......+.   +.+.....
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la  562 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA  562 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence            45566777899999998888877665433        11122223322 22457888888888888776   22222222


Q ss_pred             HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH--------hcCCchHHHHHHHHHhhHhHhh
Q 019679          106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL--------AEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~--------~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      ....+......+.|....++..+...++.++..-.     ..++|.+...        .-+....+...++.-+..+...
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~  637 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIIS  637 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence            34555667777788888888888888887766422     2344444322        1122222333333333222221


Q ss_pred             h--ChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHh
Q 019679          178 L--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPH-YLYRMTILQAISLL  252 (337)
Q Consensus       178 ~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l  252 (337)
                      .  ....+.+.++-.+...+.|++..+-.++..+++.++...|.+  ...+.+++.+.+.+.+.+ ...|.++..+++.+
T Consensus       638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            1  112223345566667788988999999999999999887733  223467788888887754 66778899999998


Q ss_pred             ccccC--hHH--HHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHh
Q 019679          253 APVMG--SEI--TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       253 ~~~~~--~~~--~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~  292 (337)
                      ...-|  ..+  -.+.++..+...+. .....+|.++++.++..+
T Consensus       718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence            65443  111  13345555554443 444689999999888554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.88  E-value=0.95  Score=38.48  Aligned_cols=171  Identities=17%  Similarity=0.184  Sum_probs=96.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH--HHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhC--hHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFG--PDW  221 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~--~~~  221 (337)
                      ..+.++++.+++.++..++..+..+....+.....  ..+++.++.++++    ++.++...++.++..+...-.  ...
T Consensus       108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f  187 (312)
T PF03224_consen  108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF  187 (312)
T ss_dssp             HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence            33444777788999999999999888766543322  3566666666654    556777888899888864311  111


Q ss_pred             HHhhHHHHHHHhh-----cCc--chHHHHHHHHHHHHhccc--cChHHHHhhHHHHHHhhccCCC-hhHHHHHHHHHHHH
Q 019679          222 AMQHIVPQVLEMI-----NNP--HYLYRMTILQAISLLAPV--MGSEITCSQLLPVVINASKDRV-PNIKFNVAKVLQSL  291 (337)
Q Consensus       222 ~~~~l~~~l~~~~-----~~~--~~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i  291 (337)
                      .....++.+.+.+     .+.  ..+....++.++=.++-.  .-.......++|.+...+++.. +.|-+-++.++.++
T Consensus       188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl  267 (312)
T PF03224_consen  188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL  267 (312)
T ss_dssp             HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            2345566666666     222  244445554444444321  1122234458899888886554 45666778888888


Q ss_pred             hhhhcH----HHHHHhhhHHHHhhhCC--CCccHH
Q 019679          292 IPIVDQ----SVVEKSIRPCLVELSED--PDVDVR  320 (337)
Q Consensus       292 ~~~~~~----~~~~~~i~~~l~~l~~d--~~~~vr  320 (337)
                      .+.-..    ..+...+++.+..+...  .|+++.
T Consensus       268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~  302 (312)
T PF03224_consen  268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT  302 (312)
T ss_dssp             TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred             HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence            765442    23456677788777654  255554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.85  E-value=1.2  Score=39.57  Aligned_cols=217  Identities=9%  Similarity=0.086  Sum_probs=118.3

Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhch---h---hHHhhHHH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---D---LLSQSLLP  150 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~llp  150 (337)
                      -+|+.+=++.++.+..+.+...+..  ..+.+..++....+++ +|..-....++++.+.+....   +   .+.+.++|
T Consensus        41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            4566676777777766665444321  2345556666666554 678888899999988887542   2   45678899


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHH---HHHHHHHHHHHHHhChH----HHH
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR---DAAANNVKRLAEEFGPD----WAM  223 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~a~~~l~~~~~~~~~~----~~~  223 (337)
                      .+...++..-...--.+++.++.+.+.......-+.+...+-.++...-|+-|   -+.++.+..+.+.-+..    ...
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l  200 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQL  200 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhH
Confidence            98888876544455555666666666554111112222233334444444311   23333444433332221    124


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH---HHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      +.++..+-.++.++...  ..+...+..+...++.+.   +...++-.++..+. .+.+..++..+..++.++-..|++
T Consensus       201 ~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  201 EPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            56777777777776422  236677888887777654   44455556665554 444566666666666666555554

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.84  E-value=1.3  Score=39.55  Aligned_cols=224  Identities=14%  Similarity=0.209  Sum_probs=122.1

Q ss_pred             hHHHHHHhcC----CChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccCh-
Q 019679           31 VVPAYVRLLR----DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK-  102 (337)
Q Consensus        31 l~~~l~~~~~----d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-  102 (337)
                      ++..+...+.    .+|+-+=+...+.+.-..+.+.+.  ...+.+...+....++ +||..-....++++.+.+...+ 
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            4444444442    234445555555555444444332  3455566666665555 5789999999999998775442 


Q ss_pred             --h---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH---hhHHHHHHHHhcCCchHHH---HHHHHHh
Q 019679          103 --D---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVR---LAIIEYI  171 (337)
Q Consensus       103 --~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~llp~l~~~~~d~~~~vr---~~~~~~l  171 (337)
                        +   ...+.++|.+...++..-.+.--.+++-++.+.+......+.   ..++|.+.   ...-|.-|   -+.+..+
T Consensus       107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll---~p~lWe~~gniPalvrLL  183 (435)
T PF03378_consen  107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLL---SPALWERRGNIPALVRLL  183 (435)
T ss_dssp             GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHT---SGGGGGSTTTHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHc---CcchhccCCCcCcHHHHH
Confidence              2   245789999999998887888888899999888875522222   33444433   33334322   2222333


Q ss_pred             hHhHhhhChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhc-CcchHHHH
Q 019679          172 PLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMIN-NPHYLYRM  243 (337)
Q Consensus       172 ~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~-~~~~~vR~  243 (337)
                      ..+.+..+..    ...+.++.++-+++.....+  ..+...+..+...++.+.   +...++..+..-++ ++....+.
T Consensus       184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~  261 (435)
T PF03378_consen  184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVK  261 (435)
T ss_dssp             HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHH
T ss_pred             HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHH
Confidence            3333332222    23356777777888765433  336677788877776653   23344444444444 44566666


Q ss_pred             HHHHHHHHhccccChH
Q 019679          244 TILQAISLLAPVMGSE  259 (337)
Q Consensus       244 ~~~~~l~~l~~~~~~~  259 (337)
                      ..+.+++.++-..|..
T Consensus       262 ~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  262 RFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHcCHH
Confidence            6666666665555544

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=1.8  Score=40.72  Aligned_cols=152  Identities=16%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHh--hCHHHHHHhh---hHhhHH
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRI--LNPELAIQHI---LPCVKE   76 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~--~~~~~~~~~l---l~~l~~   76 (337)
                      ..-..||.++-.+|+....--+....+-+...+.++++|. |..||.+++.++.-+.+.  ++++.+.+++   ...+.+
T Consensus       499 ~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk  578 (978)
T KOG1993|consen  499 NSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK  578 (978)
T ss_pred             chhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence            3456799999999988874444444556778888999997 778999999999988774  3444443332   222333


Q ss_pred             hcCC-CcHHHHHHHHHHHHhcCcccChhh--HH---hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh--HHhhH
Q 019679           77 LSSD-SSQHVRSALATVIMGMAPILGKDA--TI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSL  148 (337)
Q Consensus        77 l~~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l  148 (337)
                      +++. ..-+.|...+..++.+....++..  ..   -.++|.+.+-.+ +.+-.|.+.+..+.+++..+|.+.  +.+.+
T Consensus       579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL  657 (978)
T KOG1993|consen  579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL  657 (978)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence            3332 333567777777777765544332  11   233444444333 567899999999999999998643  33455


Q ss_pred             HHHHHHH
Q 019679          149 LPAIVEL  155 (337)
Q Consensus       149 lp~l~~~  155 (337)
                      +|.+.-.
T Consensus       658 ~pVIel~  664 (978)
T KOG1993|consen  658 YPVIELS  664 (978)
T ss_pred             HHHHHHh
Confidence            6655433

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.76  E-value=1.3  Score=39.19  Aligned_cols=254  Identities=11%  Similarity=0.095  Sum_probs=134.1

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc-h-hhHHhhHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I-DLLSQSLLPA  151 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~~~llp~  151 (337)
                      ..|++|.--..+-+.+..+......+.    ....++..++.++..+++.-|......+..+..... . ..+.+.+-..
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            346777655666666666655443322    345677888999999999999999988888765442 2 2334455555


Q ss_pred             HHHHhc-CCchHHHHHHHHHhhHhHhhhC---hhhHHHHHHHHHHHHccccchH-HHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          152 IVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       152 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                      +.+.+. ......-..+++.++.+...+.   ++.+..-+...++.+.+.+... -......++..+.+.- +. ....+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~-l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS-LAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG-GHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch-hHHHH
Confidence            555554 3334445556677777777654   2334444555555555554432 2445555555555421 11 22334


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHh---hHHHHHHhhccCCChhHHHHHHHHHHHH--hhhhc--HHH
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS---QLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVD--QSV  299 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i--~~~~~--~~~  299 (337)
                      +..+...-.-.+..-....+.-+..+...++.+.+..   .++..+..++..++..|-.+|+..+..=  ...+.  .+.
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~  336 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV  336 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence            4444444444455555666667777766666554433   3555566667777777766666443221  11111  112


Q ss_pred             HHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHHHh
Q 019679          300 VEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       300 ~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~~  333 (337)
                      +...+.|.|.+..+ -.+..||..|..++..+.+.
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            23444444444332 23556777777777766543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=95.74  E-value=1.1  Score=38.26  Aligned_cols=53  Identities=11%  Similarity=0.233  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 019679            6 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI   60 (337)
Q Consensus         6 ~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~   60 (337)
                      .-++.+.+.++...+.++.=.  .+.+..-..++.|.+..||..|+..|..++..
T Consensus        39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~   91 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG   91 (460)
T ss_pred             HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence            445666677777666665422  23345555677777777777777777777665

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.73  E-value=1.4  Score=39.11  Aligned_cols=207  Identities=11%  Similarity=0.094  Sum_probs=95.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~   75 (337)
                      |++|.--..+=+.+-.+......+.    ....++-.+..++.++|+.-|......+-.+-......  .+.+.+-..+.
T Consensus       101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~  180 (409)
T PF01603_consen  101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFY  180 (409)
T ss_dssp             -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHH
T ss_pred             ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6778777777777777766554433    33467777788888888888888888777765543321  22233333333


Q ss_pred             HhcCC-CcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679           76 ELSSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLP  150 (337)
Q Consensus        76 ~l~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~llp  150 (337)
                      +...+ ....-=..+++.++.+...+.   ++.....+...++.+.+.+. ......-..++..+.+.-  ..+...++.
T Consensus       181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~i~  258 (409)
T PF01603_consen  181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPVIK  258 (409)
T ss_dssp             HHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHHHH
T ss_pred             HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHHHH
Confidence            33332 222333445555555554332   12222333344444444332 222333334444333321  112233444


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH---HHHHHHHHHccccchHHHHHHHHHH
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNV  210 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l  210 (337)
                      .+.....-.+..-....+..+..+...++++.+..   .+...+..+++.++..|-+.|+..+
T Consensus       259 ~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w  321 (409)
T PF01603_consen  259 GLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW  321 (409)
T ss_dssp             HHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred             HHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44444444444444445555555555554443322   2333333445555556655555443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=2.5  Score=42.67  Aligned_cols=204  Identities=19%  Similarity=0.147  Sum_probs=127.3

Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHh---hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHH
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFD  184 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~  184 (337)
                      +.++.+-+.-.++..|..|++.+..+......+....   ...-.+.+++.|.+.+||......+..+...+++.  .+.
T Consensus        43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L  122 (1312)
T KOG0803|consen   43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL  122 (1312)
T ss_pred             HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3445555556678888888888888777655443322   23334456677888888888888888888777654  355


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH-------HHhhHHHHHHHhhc--------C-----------cc
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-------AMQHIVPQVLEMIN--------N-----------PH  238 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-------~~~~l~~~l~~~~~--------~-----------~~  238 (337)
                      ..++|...-.-.|....|-.+|...+.....   ++.       ..+.+.+...+.+-        |           ..
T Consensus       123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~  199 (1312)
T KOG0803|consen  123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKY  199 (1312)
T ss_pred             HhhhhhhhheecccchHHHHHHHHHHHhhcC---hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhh
Confidence            6677777667778877877777776665432   211       11223333333311        1           22


Q ss_pred             hHHHHHHHHHHHHhccccChHHHHh---------hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhH
Q 019679          239 YLYRMTILQAISLLAPVMGSEITCS---------QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRP  306 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~~~~~---------~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~  306 (337)
                      .++-..++.++..+....|...-..         .--..++++++++.+.+|.+....+..+.+.+.+.   ....++.|
T Consensus       200 ~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~  279 (1312)
T KOG0803|consen  200 QRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP  279 (1312)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence            4455556666666654444321111         12356889999999999999999998888776543   23456777


Q ss_pred             HHHhhhCCCC
Q 019679          307 CLVELSEDPD  316 (337)
Q Consensus       307 ~l~~l~~d~~  316 (337)
                      .+.....+.+
T Consensus       280 ~~~~~~~~~d  289 (1312)
T KOG0803|consen  280 VLLGSIDSLD  289 (1312)
T ss_pred             HHHccccccc
Confidence            7777666665

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.66  E-value=0.63  Score=35.32  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=55.9

Q ss_pred             HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH---hhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhc
Q 019679           66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIG  140 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~  140 (337)
                      ..+.+...+.++++++++.-|-.++..++...+..+.+...   ...+..+.+.++.++ +.++..++.++..+....+
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~  100 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR  100 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34566677778888888888999999888888877666543   456666777776654 5788888888888877654

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.63  E-value=0.38  Score=35.56  Aligned_cols=48  Identities=13%  Similarity=0.092  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHhccccChHHHHh-hHHHHHHhhccCCChhHHHHHHHHH
Q 019679          239 YLYRMTILQAISLLAPVMGSEITCS-QLLPVVINASKDRVPNIKFNVAKVL  288 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l  288 (337)
                      ......++.++.........+...+ .+++.+++++.++..  |.+|+.+|
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            5566666666666666666544433 466666666666555  55555553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.8  Score=39.30  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=80.4

Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---HH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD  184 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~  184 (337)
                      .-++..++..+..||..|+.++..+... .+..+   ...+++.+.+++.|.+..||......+..++...+++.   +.
T Consensus        61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~  139 (393)
T KOG2149|consen   61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV  139 (393)
T ss_pred             HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence            3445555667788999998888887776 33222   23466667777888888899988888888776665543   44


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  222 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  222 (337)
                      .-+.+.+...+..-.+++|..++..+..+...+++.+.
T Consensus       140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~  177 (393)
T KOG2149|consen  140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFS  177 (393)
T ss_pred             HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHH
Confidence            45667777777888889999999988888888876543

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.46  Score=40.71  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhH
Q 019679          191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQL  265 (337)
Q Consensus       191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l  265 (337)
                      ++..++..+..||..|...+..+.......  .....+++.+.+.+.|.+..+|......+..+....+++   .+..-+
T Consensus        63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~  142 (393)
T KOG2149|consen   63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL  142 (393)
T ss_pred             HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence            445578889999999999999888764222  124467888888888999999999999888876555543   345668


Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679          266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      +|++...+..-.+++|.-+...|..+...+++.
T Consensus       143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            888888899999999999999999999888775

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=95.51  E-value=0.099  Score=35.20  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHh
Q 019679          197 DKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLL  252 (337)
Q Consensus       197 d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l  252 (337)
                      |+.|.+|+.|++.++.++..++..  .....+...+...+.|+  +...+..|+..+..+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l   76 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL   76 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            445566666666666666665532  13334455555555543  245555555555553

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.48  E-value=0.72  Score=35.00  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH---hhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccCh-
Q 019679          184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS-  258 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~-  258 (337)
                      .+++..-+..++.++++.-|..++..+..+++..|.+.+.   ...+..+...+++++ ..++..++.++..+....++ 
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4556666777778877777888777777777765544331   234455555555443 56677777777777544332 


Q ss_pred             -----HH---HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          259 -----EI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       259 -----~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                           +.   ..+.+++.+++++++  ..+...+..+|..+...++.
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence                 11   123455666666665  56667778888887766543

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=95.48  E-value=1.8  Score=38.76  Aligned_cols=75  Identities=12%  Similarity=0.018  Sum_probs=42.0

Q ss_pred             hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH---HHHHHHHHHHHcc
Q 019679          122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLK  196 (337)
Q Consensus       122 ~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~  196 (337)
                      -..|..++++||.+...+..+......-+.+...+++++..-|..++-.+..++.......-   .+.+.+.+...|.
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~  178 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE  178 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence            45566677777777766654444233333566666666666666666666666665432111   1345555555555

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.47  E-value=1.6  Score=38.07  Aligned_cols=215  Identities=18%  Similarity=0.154  Sum_probs=120.4

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccCh-hhHHhhhHHHH--HHhhcC-CChhHHHHHHHhHHHhHhhh-chhhHHhhHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGK-DATIEQLLPIF--LSLLKD-EFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPA  151 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l--~~~l~d-~~~~vr~~a~~~l~~l~~~~-~~~~~~~~llp~  151 (337)
                      ++.|+ ..||.++.+.+..+...... ....+.=++.+  ..+-+| ++..-|..|++-+..+.+.- |.+.+...+...
T Consensus        34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra  112 (371)
T PF14664_consen   34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA  112 (371)
T ss_pred             HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence            44555 88888888888766542211 01111111222  223333 34567889999988888763 345566678888


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh------HHHHhh
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP------DWAMQH  225 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~  225 (337)
                      +....++++.+.|..+++.+..++-.-+.-.....-+..+.+.+.|+..++-+..+.++-.+.+.-..      ....+.
T Consensus       113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~  192 (371)
T PF14664_consen  113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES  192 (371)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence            88888999999999999998887654322212222345566666666666666666666665543211      112344


Q ss_pred             HHHHHHHh----hcCcc-hHHHHHHHHHHHHhcc-ccChHHH--H-hhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          226 IVPQVLEM----INNPH-YLYRMTILQAISLLAP-VMGSEIT--C-SQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       226 l~~~l~~~----~~~~~-~~vR~~~~~~l~~l~~-~~~~~~~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      ++..+.+.    .++.. ...-.++..++..+-. +-|--.+  . -.-+..+...+.-+.+++|......+-.+.
T Consensus       193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            55555555    22222 1122233444444432 2221111  0 134556667777788888888877766554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.44  E-value=0.32  Score=36.60  Aligned_cols=131  Identities=15%  Similarity=0.164  Sum_probs=83.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc---ChHHH-HhhHHHHHHhh
Q 019679          197 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEIT-CSQLLPVVINA  272 (337)
Q Consensus       197 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~---~~~~~-~~~l~~~l~~~  272 (337)
                      ...+++|..+.-.+.++.+.. ++...+.+...+...+.+....-...++.++..+-+..   +...| .+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            456788999988888887544 34455566666767776555445555666666654432   22222 34567777777


Q ss_pred             cc--CCChhHHHHHHHHHHHHhhhhcH-HHHHHhhhHHHHhhhC-CCCcc-HHHHHHHHHH
Q 019679          273 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-DPDVD-VRFFATQALQ  328 (337)
Q Consensus       273 l~--d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~al~  328 (337)
                      ..  .++..+..+++++|..-+..-.. ..+..+..+.|..+.+ +++.. +|..|.-+|-
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            76  66778888888888877643332 2456789999999874 44454 6766665543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=95.43  E-value=1.3  Score=36.99  Aligned_cols=135  Identities=13%  Similarity=0.087  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH---H-----HhhHHHHHHHhhc--------CcchHHHHHH
Q 019679          182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-----MQHIVPQVLEMIN--------NPHYLYRMTI  245 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~-----~~~l~~~l~~~~~--------~~~~~vR~~~  245 (337)
                      .+.+-++|.++.++.|.++.+|..++..+..+........   .     .+.+.+.+..++.        +++..+-..+
T Consensus       115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a  194 (282)
T PF10521_consen  115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA  194 (282)
T ss_pred             HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence            3556799999999999999999999999999998775443   2     2234445555554        4556666777


Q ss_pred             HHHHHHhcccc---Ch----HHHHhhHHHHHHhh-ccC---CChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhh
Q 019679          246 LQAISLLAPVM---GS----EITCSQLLPVVINA-SKD---RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS  312 (337)
Q Consensus       246 ~~~l~~l~~~~---~~----~~~~~~l~~~l~~~-l~d---~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~  312 (337)
                      ..++-.+....   +.    ..+...+...++.. ...   +++.++...++.+..+...+|..  .+...++|.+.+.+
T Consensus       195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l  274 (282)
T PF10521_consen  195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL  274 (282)
T ss_pred             HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            77777774421   11    11222233322222 222   34889999999999999998876  45677888888877


Q ss_pred             CCCC
Q 019679          313 EDPD  316 (337)
Q Consensus       313 ~d~~  316 (337)
                      .++.
T Consensus       275 ~npf  278 (282)
T PF10521_consen  275 ENPF  278 (282)
T ss_pred             cCCC
Confidence            7654

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=95.42  E-value=1  Score=35.73  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc-cchHHHHHHH-HHHHHHHHHhChHHHHhh
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAA-NNVKRLAEEFGPDWAMQH  225 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~-~~l~~~~~~~~~~~~~~~  225 (337)
                      .......+..+.....|..++..+........     ...++.+..++.+ ++|.+-...+ ..++.+....      +.
T Consensus        52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~  120 (213)
T PF08713_consen   52 LYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PE  120 (213)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GG
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HH
Confidence            33444555666666666666665554333222     2234455555544 5566666553 3344433211      45


Q ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ..+.+....++++..+|.+++.++......    ...+.++..+...+.|+...||.+...+|..++...+
T Consensus       121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~  187 (213)
T PF08713_consen  121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP  187 (213)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence            677777888887755555554443332222    3445777778888888888888888888888877543

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=95.39  E-value=1.1  Score=35.67  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=14.9

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679          186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEE  216 (337)
Q Consensus       186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  216 (337)
                      .++..+...+.|++..||.+..-.|..++..
T Consensus       155 ~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  155 ELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            3444444444555555555555555555444

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=3.1  Score=40.06  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--H---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--W---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-  258 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-  258 (337)
                      .+++.....+|++++-.+|-.++..+......+...  .   ..+...|.+++.+.+.++-+-..|+.++..++...|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            345666678899999999999999888766655321  1   2456778889999999988888999999999877763 


Q ss_pred             --HHHHhhHHHHHHhhccCCC
Q 019679          259 --EITCSQLLPVVINASKDRV  277 (337)
Q Consensus       259 --~~~~~~l~~~l~~~l~d~~  277 (337)
                        .-+...++|-+-.++.|..
T Consensus       882 v~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              3356678888877776654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.17  E-value=1.8  Score=36.88  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=77.3

Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhc----CCchHHHHHHHHHhhHhHhhhC--h
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLG--V  180 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~--~  180 (337)
                      ....+.+++..++..+...++..+..+...-+....  .+.+++.+.+.+.    .++...+..++.++..+...-.  .
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~  185 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ  185 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence            445556677777888888888888888766443221  1244454444443    3444556777777777764432  1


Q ss_pred             hhHHHHHHHHHHHHc-----c--ccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcCcc-hHHHHHHHHH
Q 019679          181 GFFDDKLGALCMQWL-----K--DKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPH-YLYRMTILQA  248 (337)
Q Consensus       181 ~~~~~~l~~~l~~~l-----~--d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~~~-~~vR~~~~~~  248 (337)
                      ..+....++.+...+     .  ....++.+.++-++..++  |.++.    ....++|.+.+.+++.. -.+=.-++.+
T Consensus       186 ~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~  263 (312)
T PF03224_consen  186 VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI  263 (312)
T ss_dssp             HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence            223355666666666     2  234567777777777664  33322    22347788887776532 2222234555


Q ss_pred             HHHhccccC
Q 019679          249 ISLLAPVMG  257 (337)
Q Consensus       249 l~~l~~~~~  257 (337)
                      +..+.....
T Consensus       264 l~Nl~~~~~  272 (312)
T PF03224_consen  264 LRNLLSKAP  272 (312)
T ss_dssp             HHHTTSSSS
T ss_pred             HHHHHhccH
Confidence            555554433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.08  E-value=2.8  Score=38.68  Aligned_cols=266  Identities=12%  Similarity=0.073  Sum_probs=128.4

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc--HHHHHHHHHHHHhcCcccChhhHHh
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      ..+..+...+++++..+|.+++..|+..-.....+++...+.|    ...|.+  ..|--.+.-++|.+.----+++...
T Consensus       452 palALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~P----i~~d~~~~~ev~~~aslsLG~IfvGscn~dvts  527 (878)
T KOG2005|consen  452 PALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSP----IMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTS  527 (878)
T ss_pred             HHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhH----HhcCCCCchhHHHHHHhhcceeEEecCChHHHH
Confidence            4666777777778888888888877765554444444333333    334433  3455555555555432111222333


Q ss_pred             hhHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--H
Q 019679          108 QLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--F  183 (337)
Q Consensus       108 ~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~  183 (337)
                      .++..+.+--+  -.+...|-.++ +++.+  ..|.....+.+...+..+    ....|.. ++.+...+...|...  .
T Consensus       528 ~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe~~d~~~e~~~~i----~~~~~~~-~~~lv~~caYaGTGnvl~  599 (878)
T KOG2005|consen  528 SILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQESVDAVVETIKAI----EGPIRKH-ESILVKSCAYAGTGNVLK  599 (878)
T ss_pred             HHHHHHHHhhhhhhhchHHHHHHH-HHHHH--HhcccchHHHHHHHHHHh----hhHHHHH-HHHHHHHhhccccCceEE
Confidence            44444433222  12233443222 11111  223222212222222211    1112222 122223333333221  1


Q ss_pred             HHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH
Q 019679          184 DDKLGALCMQWLKDKVY---SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI  260 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~  260 (337)
                      .+.  ..+.....+...   .-.+-|+-.++.+  ..|.+.-.+-.+.++-.++.-.++++|.+.-.+++.++..-.   
T Consensus       600 Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAli--AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNP---  672 (878)
T KOG2005|consen  600 IQS--QLLLSFCGEHDADLESEQELAVLGIALI--AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP---  672 (878)
T ss_pred             ech--hhhhhhcCCCccchhhhccchhhhhhhh--hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC---
Confidence            111  112222332211   1111222222222  233333334456666666666778899998888888764332   


Q ss_pred             HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHh-hhCCCC
Q 019679          261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPD  316 (337)
Q Consensus       261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~  316 (337)
                       .-.+++.+.++.+|.+.+|-.+++-+++-++..-.+..+ ..++..+.. ..+|++
T Consensus       673 -q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARl-a~mLrqlaSYyyKd~~  727 (878)
T KOG2005|consen  673 -QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARL-AQMLRQLASYYYKDSK  727 (878)
T ss_pred             -cchHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHH-HHHHHHHHHHHhccch
Confidence             236889999999999999999999999988764443332 233333333 344544

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.01  E-value=7.3  Score=43.19  Aligned_cols=279  Identities=14%  Similarity=0.144  Sum_probs=159.0

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh----C-HH-----HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI   99 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~----~-~~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~   99 (337)
                      -+++.+.+.+..++.+++..+..++..+.+..    + ++     .+..++++.+.+++-|+.|.-|...+..++.+...
T Consensus       984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen  984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence            37899999999999999999999988776542    1 11     34577888888999999999999999999888876


Q ss_pred             cChhhHH---hhhHHHHHHhhcCCChhHHH----HHHHhHHHhHhh----hchh----hHHhhHHHHHHHHhcCCchHHH
Q 019679          100 LGKDATI---EQLLPIFLSLLKDEFPDVRL----NIISKLDQVNQV----IGID----LLSQSLLPAIVELAEDRHWRVR  164 (337)
Q Consensus       100 ~~~~~~~---~~l~~~l~~~l~d~~~~vr~----~a~~~l~~l~~~----~~~~----~~~~~llp~l~~~~~d~~~~vr  164 (337)
                      .+..-..   ..++..+...+.|...++..    .+-..+-.+...    +..+    .....++-.+..-+.+++..||
T Consensus      1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred             chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            6632221   34455555556665443333    222222222222    1111    1123344455555678888999


Q ss_pred             HHHHHHhhHhHhhhChhhHHHHHHHHHHHHc---------cccchHHHHHHHHHHHHHHHHhChHHH--Hhh------HH
Q 019679          165 LAIIEYIPLLASQLGVGFFDDKLGALCMQWL---------KDKVYSIRDAAANNVKRLAEEFGPDWA--MQH------IV  227 (337)
Q Consensus       165 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---------~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~------l~  227 (337)
                      ..+...+..+++..|.+.  .+++..+.+.+         ..-...+.-..+.++.. +-..+++.+  ...      ..
T Consensus      1144 ~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~f-C~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITF-CLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred             HHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHH-HHHcCCcccCchHHHHHHHHHH
Confidence            999999999998886543  22222222222         22222222222222111 112222211  000      11


Q ss_pred             HHHHHhhc---------------CcchHHHHHHHHHHHHhccccC-----hHHHHhhHHHHHHhhccCCChhHHHHHHHH
Q 019679          228 PQVLEMIN---------------NPHYLYRMTILQAISLLAPVMG-----SEITCSQLLPVVINASKDRVPNIKFNVAKV  287 (337)
Q Consensus       228 ~~l~~~~~---------------~~~~~vR~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  287 (337)
                      ..+.....               ...-+.|.+++..+........     -..+...++..+++.+.-+.+++...+..+
T Consensus      1221 ~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1221 IALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred             HHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            11111000               0123467888777776543322     123567888888888888888988888887


Q ss_pred             HHHHhh---hhcHHHHHHhhhHHHHhh
Q 019679          288 LQSLIP---IVDQSVVEKSIRPCLVEL  311 (337)
Q Consensus       288 l~~i~~---~~~~~~~~~~i~~~l~~l  311 (337)
                      +..+..   .++.+.......|.|.++
T Consensus      1301 l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1301 LRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred             HHhhhhccccccHHHHHhhHHHHHHhh
Confidence            777643   244444444444555544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.96  E-value=0.084  Score=37.10  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=46.6

Q ss_pred             hhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhh--H-HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679           70 ILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA--T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        70 ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  137 (337)
                      ++..|.+++ ...++.+-..||.-+|.++...+...  . .-.....+.+++.+++++||..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            455555555 33466777888888888887665322  1 13466788889999999999999999887754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=2  Score=43.47  Aligned_cols=150  Identities=15%  Similarity=0.120  Sum_probs=97.6

Q ss_pred             HHhhhHhhHHh-cCCCcHHHHHHHHHHHHhcC--cccC-hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh
Q 019679           67 IQHILPCVKEL-SSDSSQHVRSALATVIMGMA--PILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  142 (337)
Q Consensus        67 ~~~ll~~l~~l-~~d~~~~vr~~a~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  142 (337)
                      ...++..+..+ ..+.+|++|.+.++-+..+.  ..++ .+...+++-..+.+++.|.+-+||+.|+.++..+.+.-...
T Consensus      1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence            34455555544 45578899999888876643  3344 45556889999999999999999999999999988753322


Q ss_pred             hHHhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679          143 LLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       143 ~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  217 (337)
                      ...+..-+..... ....+..-.++++..++.++-.++-  ..+.++.+..+....+++ ..+++++-+++..+-...
T Consensus      1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            2211111111111 2334455678888888888776643  234455555555555555 778888888888876655

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.91  E-value=2.4  Score=37.08  Aligned_cols=208  Identities=16%  Similarity=0.121  Sum_probs=109.0

Q ss_pred             cHHHHHHHHHHHHhcCc------ccChhhHHhhhHHHHHHhhcCCC--hhHHHHHHHhHHHhHhhhchhh----HHhhHH
Q 019679           82 SQHVRSALATVIMGMAP------ILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL----LSQSLL  149 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~----~~~~ll  149 (337)
                      +.++-..|+++++.+..      .++.+ ....++...+..+.+++  ..+....+..+..  +.+++..    ....++
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d-~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~  135 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDD-FASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL  135 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence            55677788888887653      33322 22345566666665543  2444444444332  1222221    223344


Q ss_pred             HHHHHHhc-CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH----
Q 019679          150 PAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----  222 (337)
Q Consensus       150 p~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----  222 (337)
                      ..+..+-+ =++..+-...+..+..+....+...  ..+.-+|.++..+-+....+|..|..........+|++..    
T Consensus       136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            44443332 2333444555555555555543322  2344667777777788888999887777777666665321    


Q ss_pred             --------------HhhHHHHHHHhhcC-cchHHHHHHHHHHHHh----ccc-cChHHHHhhHHHHHHhhccCCChhHHH
Q 019679          223 --------------MQHIVPQVLEMINN-PHYLYRMTILQAISLL----APV-MGSEITCSQLLPVVINASKDRVPNIKF  282 (337)
Q Consensus       223 --------------~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l----~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~  282 (337)
                                    .+.+.+.+.+++.+ .+...   +...-+.+    ... +..-.+.+..+.....+++++++.+|.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~---a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~  292 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKL---AMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI  292 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCcCCcch---HHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence                          12233334455544 22111   11111111    111 222334566777777778888888888


Q ss_pred             HHHHHHHHHhhhh
Q 019679          283 NVAKVLQSLIPIV  295 (337)
Q Consensus       283 ~a~~~l~~i~~~~  295 (337)
                      .|..+...+....
T Consensus       293 ~A~~aW~~liy~~  305 (372)
T PF12231_consen  293 QAFKAWRRLIYAS  305 (372)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888876633

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=5.1  Score=40.68  Aligned_cols=241  Identities=12%  Similarity=0.073  Sum_probs=133.9

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH---HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhh
Q 019679           35 YVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL  109 (337)
Q Consensus        35 l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~---~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l  109 (337)
                      +.+-+.-.|+..|..|+..+..+.+....+...   .+....+.++..|.+..||......+..+...+++..  ....+
T Consensus        46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l  125 (1312)
T KOG0803|consen   46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL  125 (1312)
T ss_pred             HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            334444568888999999888888766555332   2334456778999999999999999998887776543  34677


Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  185 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  185 (337)
                      +|.+.-...|.+..|-.+|..++......-....    ..+.+.+...+.+-                   ..++... +
T Consensus       126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~-------------------~~~~~sl-S  185 (1312)
T KOG0803|consen  126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILV-------------------KETPDSL-S  185 (1312)
T ss_pred             hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHh-------------------ccCcccc-c
Confidence            8888888888888888887777765544100000    01112222222110                   0011100 0


Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHH-------h--hHHHHHHHhhcCcchHHHHHHHHHHHHhcccc
Q 019679          186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-------Q--HIVPQVLEMINNPHYLYRMTILQAISLLAPVM  256 (337)
Q Consensus       186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-------~--~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~  256 (337)
                      ...-.-.+-++.....|...++.++..+....|.+.-.       .  .-...++.+++++++.+|.+....+-.+....
T Consensus       186 d~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i  265 (1312)
T KOG0803|consen  186 DLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDI  265 (1312)
T ss_pred             hhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence            00000001122223344455555555555433332100       1  12346778888888889988888888776554


Q ss_pred             ChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          257 GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       257 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ..-   ...+++.|.+.....+.+ .|......++....+.+.
T Consensus       266 ~~~~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p  307 (1312)
T KOG0803|consen  266 LNRVMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLP  307 (1312)
T ss_pred             HHhcchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhh
Confidence            322   224466677766666655 444444444333333333

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.78  E-value=1.4  Score=36.33  Aligned_cols=131  Identities=17%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc------chHHHHHHHHHHHHhccc--cChHHHHhhH
Q 019679          194 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP------HYLYRMTILQAISLLAPV--MGSEITCSQL  265 (337)
Q Consensus       194 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~vR~~~~~~l~~l~~~--~~~~~~~~~l  265 (337)
                      ++...+.+.|.+|+.++..       +.-.++++|.+..+++++      +-.+-.+.+....++...  +=.+++...+
T Consensus       206 l~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql  278 (450)
T COG5095         206 LLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL  278 (450)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence            3555677889999888753       333567888888888763      233444455555555332  2245567788


Q ss_pred             HHHHHhhc------cCC----ChhHHHHHHHHHHHHhhhhcHHHH--HHhhhHHHHhhhCC--CCccHHHHHHHHHHHHH
Q 019679          266 LPVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQSVV--EKSIRPCLVELSED--PDVDVRFFATQALQSKD  331 (337)
Q Consensus       266 ~~~l~~~l------~d~----~~~vr~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d--~~~~vr~~a~~al~~l~  331 (337)
                      +|.++.++      +++    ...+|.-|+..++.+.+.+++.+.  ...+...+.+..-|  +.....+.|.++++.+.
T Consensus       279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~  358 (450)
T COG5095         279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS  358 (450)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence            88877665      222    235999999999999998887642  22333333332222  34456777777776654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.71  E-value=0.23  Score=38.58  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=55.7

Q ss_pred             HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc-cChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV-MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      +.+..++.+.++..+++..+|..|+..+..+... +-.   -...+|.+..+..|+++.+|..|.+.+..+.+..++
T Consensus         5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn---P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s   78 (187)
T PF12830_consen    5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN---PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES   78 (187)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC---hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence            3566778888888888888999998888887542 111   135788888888999999999998888888776643

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=94.68  E-value=3.5  Score=37.90  Aligned_cols=158  Identities=11%  Similarity=0.001  Sum_probs=95.9

Q ss_pred             hhCHHHHHHhhhHhhHHhcCCCcH--HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHh---h-----cCCChhHHHHHH
Q 019679           60 ILNPELAIQHILPCVKELSSDSSQ--HVRSALATVIMGMAPILGKDATIEQLLPIFLSL---L-----KDEFPDVRLNII  129 (337)
Q Consensus        60 ~~~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l-----~d~~~~vr~~a~  129 (337)
                      ++...+...+++..+...+.++.|  .--...|+++|.++....++...+.++.++..+   +     +|....|-...+
T Consensus       472 hL~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM  551 (1053)
T COG5101         472 HLIVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM  551 (1053)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence            344445556677777777777766  455678999999998777655444444444333   3     232222322222


Q ss_pred             HhHHHhHhhhch-hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh----------hhHHHHHHHHHHHHcccc
Q 019679          130 SKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------GFFDDKLGALCMQWLKDK  198 (337)
Q Consensus       130 ~~l~~l~~~~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~  198 (337)
                      -.+|+.-..... -.+.+.+...+.++..+.+..++..++..+..+++.+..          +.+...++.-+.....|-
T Consensus       552 yvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL  631 (1053)
T COG5101         552 YVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDL  631 (1053)
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccC
Confidence            222322222211 123456666677777788899999999999999988743          345556666666666776


Q ss_pred             chHHHHHHHHHHHHHHHHh
Q 019679          199 VYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       199 ~~~vr~~a~~~l~~~~~~~  217 (337)
                      .+.-...-..+.+.+....
T Consensus       632 ~pqQ~htfYeAcg~vIse~  650 (1053)
T COG5101         632 EPQQKHTFYEACGMVISEV  650 (1053)
T ss_pred             ChHHHhHHHHHHhHHHhcc
Confidence            6666666666666665543

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=94.67  E-value=0.044  Score=28.00  Aligned_cols=30  Identities=33%  Similarity=0.338  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 019679            5 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN   42 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~   42 (337)
                      |.||+.++.+|+.+.        .++.++.+.+.++|+
T Consensus         1 ~~vR~~aa~aLg~~~--------~~~a~~~L~~~l~d~   30 (30)
T smart00567        1 PLVRHEAAFALGQLG--------DEEAVPALIKALEDE   30 (30)
T ss_pred             CHHHHHHHHHHHHcC--------CHhHHHHHHHHhcCC
Confidence            689999999999874        245677777777663

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=94.67  E-value=0.042  Score=30.76  Aligned_cols=25  Identities=44%  Similarity=0.466  Sum_probs=14.8

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGK   53 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~   53 (337)
                      +.+...+.+.+.|+++.||+++++.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4555666666666666666666543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=94.60  E-value=2.8  Score=36.51  Aligned_cols=229  Identities=14%  Similarity=0.110  Sum_probs=135.6

Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHHHhhhH-hh-HHhcCC-CcHHHHHHHHHHHHhcCccc
Q 019679           25 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQHILP-CV-KELSSD-SSQHVRSALATVIMGMAPIL  100 (337)
Q Consensus        25 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~ll~-~l-~~l~~d-~~~~vr~~a~~~l~~l~~~~  100 (337)
                      +..+....+.+...+-+++.+||.++...+..+...... ..+.+.=++ ++ ..+..| ++..=|..|++.+..+.+.-
T Consensus        20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~   99 (371)
T PF14664_consen   20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK   99 (371)
T ss_pred             hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc
Confidence            444556666666555555699999999999877654222 122222122 22 223344 45567889999999888763


Q ss_pred             -ChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC
Q 019679          101 -GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  179 (337)
Q Consensus       101 -~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  179 (337)
                       |.+.....++..+....+++++..|..|+..+..++-.-+.-.....-+..+.+.+.|.....-..++..+-.+.....
T Consensus       100 ~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  100 KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence             3333456788889999999999999999999988765432211122233444444444444455555555544443321


Q ss_pred             h------hhHHHHHHHHHHHH----ccccch-HHHHHHHHHHHHHHHHhChHHH---H-hhHHHHHHHhhcCcchHHHHH
Q 019679          180 V------GFFDDKLGALCMQW----LKDKVY-SIRDAAANNVKRLAEEFGPDWA---M-QHIVPQVLEMINNPHYLYRMT  244 (337)
Q Consensus       180 ~------~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~~~~~~~~~~~---~-~~l~~~l~~~~~~~~~~vR~~  244 (337)
                      .      ..-.+.++..+...    .++... +--+.+..++..+.+.+.+=..   . -.-+..+++.+.-++..+|..
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~  259 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA  259 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence            1      11123333333333    222221 3556667778888777643110   1 145666777888889899999


Q ss_pred             HHHHHHHhc
Q 019679          245 ILQAISLLA  253 (337)
Q Consensus       245 ~~~~l~~l~  253 (337)
                      .+..+-.+-
T Consensus       260 Ildll~dll  268 (371)
T PF14664_consen  260 ILDLLFDLL  268 (371)
T ss_pred             HHHHHHHHH
Confidence            888887764

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=94.57  E-value=0.85  Score=33.65  Aligned_cols=74  Identities=11%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ...+..|..-+++++.++-..|+..+..+++.+|..+.    ...++..+.+++.+ .+..||..+...+..++..+..
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            34555555555666666666666666666666665432    22455555555555 4556666666666665555443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=94.53  E-value=0.045  Score=30.61  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=13.8

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHH
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIIS  130 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~  130 (337)
                      ..+...+...+.|+++.||.+|+.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHH
Confidence            345555555566666666666554

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=3.5  Score=37.15  Aligned_cols=250  Identities=14%  Similarity=0.081  Sum_probs=128.2

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH-HHHHHHHHHHHhcC-cccChhhHH
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMA-PILGKDATI  106 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~-~~~~~~~~~  106 (337)
                      +..+..+.+.++.++...+.+++-.++........+++...+.|.   ..++..| .+-..+.-+++.+. ..+..+ ..
T Consensus       449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi---~~std~pie~~~~asltLg~vFvGtcngD-~t  524 (881)
T COG5110         449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPI---MFSTDSPIEVVFFASLTLGSVFVGTCNGD-LT  524 (881)
T ss_pred             chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhh---hcCCCCcHHHHHHHHHhhhheEeeccCch-HH
Confidence            456777888888888888888888888776665555555544444   2233333 44444444455432 223222 23


Q ss_pred             hhhHHHHHHhhc--CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679          107 EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--  182 (337)
Q Consensus       107 ~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  182 (337)
                      ..+++-+.+--+  .+...+|-.++ +++.+  ..|.....+.+...+...-.   .-.|  ..+.+...++..|...  
T Consensus       525 s~ilqtf~Er~~~e~~tqw~RFlaL-gLa~L--f~g~~d~~d~v~eti~aIeg---~ls~--~~eiLv~~c~Y~GTGdvl  596 (881)
T COG5110         525 SLILQTFVERGKIESETQWFRFLAL-GLASL--FYGRKDQVDDVEETIMAIEG---ALSK--HEEILVKGCQYVGTGDVL  596 (881)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHH-HHHHH--HccccchhHHHHHHHHHhcc---hhhh--hHHHHHhhceecccCcHH
Confidence            344444444322  22233443322 22222  23333322333333332211   0011  1233444444444332  


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHH---HHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRL---AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  259 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~  259 (337)
                      +.+.++-+.-+.-.|+- .--++.+..++.+   ....|.+.-.+-++.++...+--.+.++|...-.+.+.+...-.  
T Consensus       597 ~Iq~lLhv~~e~~~D~~-k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP--  673 (881)
T COG5110         597 VIQSLLHVKDEFTGDTL-KNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP--  673 (881)
T ss_pred             HHHHHHhccCCCCcccc-hhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc--
Confidence            22222221111112220 0012223333322   22345554455566777777766778899888777777654322  


Q ss_pred             HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679          260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  295 (337)
Q Consensus       260 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~  295 (337)
                        .-.+++.+.+..+|...+|-.+++-+++-++..-
T Consensus       674 --Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT  707 (881)
T COG5110         674 --QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAGT  707 (881)
T ss_pred             --chHHHHHHHHhccccchhHHHHHHHHhhccccCc
Confidence              2368899999999999999999999988886543

>PF05536 Neurochondrin: Neurochondrin

Probab=94.47  E-value=4  Score=37.67  Aligned_cols=229  Identities=13%  Similarity=0.101  Sum_probs=145.3

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----HHHh-hhHhhHHhcCC-------CcHHHHHHHHHHHHhc
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-----AIQH-ILPCVKELSSD-------SSQHVRSALATVIMGM   96 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-----~~~~-ll~~l~~l~~d-------~~~~vr~~a~~~l~~l   96 (337)
                      ..+.....++...+++-|-+++..+.++++.-+...     +.+. -.+++..++..       +....+..++..+..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            345666677777777788888888888877533221     1111 12344444433       3346677778888888


Q ss_pred             Ccc--cChhhHHhhhHHHHHHhhcCCCh-hHHHHHHHhHHHhHhhh-chhhH-HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679           97 API--LGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYI  171 (337)
Q Consensus        97 ~~~--~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~llp~l~~~~~d~~~~vr~~~~~~l  171 (337)
                      +..  ...+...-.-+|.+.+.+...+. ++...++++|..++..- |.+.+ ....+|.+.+...+ +......++..+
T Consensus        85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            761  11112234678999999988777 99999999999988542 23333 33466677776655 566778888888


Q ss_pred             hHhHhhhChhhH------HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--------HHHHhhHHHHHHHhhcCc
Q 019679          172 PLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--------DWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       172 ~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~~~~~~  237 (337)
                      ..+....+.+.+      ...+++.+..........-+-..+..++.+....+.        ......+..-+..++.++
T Consensus       164 ~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr  243 (543)
T PF05536_consen  164 LNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSR  243 (543)
T ss_pred             HHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcC
Confidence            877776663322      224555555555555556677777777777655421        112345666777777654


Q ss_pred             -chHHHHHHHHHHHHhccccChH
Q 019679          238 -HYLYRMTILQAISLLAPVMGSE  259 (337)
Q Consensus       238 -~~~vR~~~~~~l~~l~~~~~~~  259 (337)
                       ....|..++.....+.+.+|.+
T Consensus       244 ~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  244 LTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             CCHHHHHHHHHHHHHHHHHhChH
Confidence             4788999998888887777754

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=94.40  E-value=0.77  Score=31.93  Aligned_cols=73  Identities=15%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             HHHHHHHhhcC----cchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          226 IVPQVLEMINN----PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       226 l~~~l~~~~~~----~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      ++..+.+.+.|    .+...|..++.+++.+.+..++.  .+.++++-.+...+..+  ++|..+++++..+.+.++.+.
T Consensus        12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence            44455555555    45778888888898888833322  34556666666666665  899999999999999888764


Q ss_pred             H
Q 019679          300 V  300 (337)
Q Consensus       300 ~  300 (337)
                      .
T Consensus        90 l   90 (107)
T PF08064_consen   90 L   90 (107)
T ss_pred             H
Confidence            4

; GO: 0004674 protein serine/threonine kinase activity

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.39  E-value=1.5  Score=36.13  Aligned_cols=138  Identities=14%  Similarity=0.258  Sum_probs=76.8

Q ss_pred             hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCC------hhHHHHHHHhHHHhHhhh--ch
Q 019679           70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------PDVRLNIISKLDQVNQVI--GI  141 (337)
Q Consensus        70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~--~~  141 (337)
                      +-..+..++...+...|.+|+.++.+=..       ..+++|.+..++.++-      -++-...+.-...+.+.-  --
T Consensus       199 F~kvisal~dEs~~~~r~aAl~sLr~dsG-------lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFv  271 (450)
T COG5095         199 FDKVISALLDESDEQTRDAALESLRNDSG-------LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFV  271 (450)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcc-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceee
Confidence            33344556677888999999998765332       4678899988886631      111111111111222111  12


Q ss_pred             hhHHhhHHHHHHHHh------c----CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHcccc--chHHHHHHH
Q 019679          142 DLLSQSLLPAIVELA------E----DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDK--VYSIRDAAA  207 (337)
Q Consensus       142 ~~~~~~llp~l~~~~------~----d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~  207 (337)
                      +.....++|.+..++      +    ++...+|..++..+..+...++...  ..+.+...+++..-|.  ...-...|+
T Consensus       272 dPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGal  351 (450)
T COG5095         272 DPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGAL  351 (450)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhh
Confidence            344566777665442      1    2344688888888888888776543  2344444444443332  335566677


Q ss_pred             HHHHHHH
Q 019679          208 NNVKRLA  214 (337)
Q Consensus       208 ~~l~~~~  214 (337)
                      .++..+.
T Consensus       352 kgls~l~  358 (450)
T COG5095         352 KGLSILS  358 (450)
T ss_pred             hhhhhhc
Confidence            6666544

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=94.36  E-value=1.9  Score=33.51  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG  101 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  101 (337)
                      ..++.+.+.+.+++..+|..|++.+..+...-  -......+|.+..+..|+++.+|..|...+..+.+..+
T Consensus         8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG--LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    8 RYLKNILELCLSSDDSVRLAALQVLELILRQG--LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC--CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            45777888889999999999999998887631  11224678999999999999999999999999887655

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=4.9  Score=40.93  Aligned_cols=151  Identities=14%  Similarity=0.176  Sum_probs=95.8

Q ss_pred             hhHHHHHHHH-hcCCchHHHHHHHHHhhHhH--hhhC-hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679          146 QSLLPAIVEL-AEDRHWRVRLAIIEYIPLLA--SQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  221 (337)
Q Consensus       146 ~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  221 (337)
                      +.++..+..+ ..+.+|++|.+++..+....  ..++ .+...+++-..+..++.|...+||+.|+.++.-+.+.-..+.
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence            5566666643 45678999999988877654  2333 344556788889999999999999999999998876432222


Q ss_pred             HHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccC--hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          222 AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMG--SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ..+..-+........ .+...+-+++..+++++-.+.  -..+.++.+..+.....++ ..++.++-+++..+......
T Consensus      1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred             chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence            111112222222222 234455567777777765443  2224555555555655666 78899999998888665543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.26  E-value=4.9  Score=37.92  Aligned_cols=70  Identities=13%  Similarity=0.171  Sum_probs=43.9

Q ss_pred             cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCc
Q 019679           29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAP   98 (337)
Q Consensus        29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~   98 (337)
                      .+.+|.+.....+ .-.+-|+.|+.+|-.+++.....-..+-+-|++.-+-.| .++..-..++..+..+..
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            3455555555543 336679999999999988766554444455555555555 355666677776665543

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.26  E-value=2.1  Score=33.57  Aligned_cols=28  Identities=21%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      ..+...+.+.+.|. +++|...+++|..+
T Consensus       170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  170 PSFAKLLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence            56677777777776 78888888888765

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.20  E-value=0.21  Score=35.14  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             chHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHH-HHH--HhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679           30 DVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPE-LAI--QHILPCVKELSSDSSQHVRSALATVIMGMA   97 (337)
Q Consensus        30 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~~~~~~~~~-~~~--~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~   97 (337)
                      +++..+.+++ .+.++.+-.-|+.-++.++...+.. .+.  -..-..+.++++++++.||..|+.++..+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5888888998 4457888888889999999887553 222  124456778999999999999999987754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.11  E-value=0.75  Score=34.57  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=62.9

Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hh-HHhhhHHHHHHh
Q 019679           41 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DA-TIEQLLPIFLSL  116 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~l~~~l~~~  116 (337)
                      ...+++|..+.-++.++.+ ..++.+.+.+-.++..++.+....-...++.++..+-...++   .. ..+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            3567788888888887752 233345556666666666655444555555656555543332   11 124566666666


Q ss_pred             hc--CCChhHHHHHHHhHHHhHhhhc-hhhHHhhHHHHHHHHh
Q 019679          117 LK--DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELA  156 (337)
Q Consensus       117 l~--d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~llp~l~~~~  156 (337)
                      +.  .++..+...+++.+..-+..-. ...+.+...+.+.+..
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~  137 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY  137 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            66  5556666666666654432211 1223344555555555

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.10  E-value=3.7  Score=35.89  Aligned_cols=211  Identities=10%  Similarity=0.021  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHhHHHHHH------hhCHHHHHHhhhHhhHHhcCCC-cH-HHHHHHHHHHHhcCcccChhhH----HhhhH
Q 019679           43 EAEVRIAAAGKVTKICR------ILNPELAIQHILPCVKELSSDS-SQ-HVRSALATVIMGMAPILGKDAT----IEQLL  110 (337)
Q Consensus        43 ~~~vR~~a~~~l~~~~~------~~~~~~~~~~ll~~l~~l~~d~-~~-~vr~~a~~~l~~l~~~~~~~~~----~~~l~  110 (337)
                      +.++-..|+..++.+.-      .++.+... .++......++++ .+ .+-...+.++..  +.++....    ...++
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~-~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~  135 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFAS-FIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL  135 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH
Confidence            56778888888877653      34444322 2333333333333 22 344444444432  22222221    22233


Q ss_pred             HHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH---
Q 019679          111 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---  184 (337)
Q Consensus       111 ~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---  184 (337)
                      ..+..+-+ =++..+-...+..+..+....+....  ...-+|.+....-+....+|..+......+...++++...   
T Consensus       136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            33333322 23456667777777777766543221  2335566655555566667777766666666555543322   


Q ss_pred             ---------------HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC-----hHHHHhhHHHHHHHhhcCcchHHHHH
Q 019679          185 ---------------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG-----PDWAMQHIVPQVLEMINNPHYLYRMT  244 (337)
Q Consensus       185 ---------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~vR~~  244 (337)
                                     +.+.+.+.+++.++...  ..+...-+.+...+|     ...+....+.....++++++..+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHH
Confidence                           22223333344431110  011111111112222     12234567777778888899999999


Q ss_pred             HHHHHHHhccccCh
Q 019679          245 ILQAISLLAPVMGS  258 (337)
Q Consensus       245 ~~~~l~~l~~~~~~  258 (337)
                      |..+-..+......
T Consensus       294 A~~aW~~liy~~~~  307 (372)
T PF12231_consen  294 AFKAWRRLIYASNP  307 (372)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99998888764443

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.06  E-value=0.1  Score=28.99  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=13.6

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      .+|.|.+++.+++..||..++.+|+.+
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl   39 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNL   39 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            445555555555555555555555444

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.89  E-value=0.22  Score=27.56  Aligned_cols=29  Identities=24%  Similarity=0.316  Sum_probs=17.3

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVN  136 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  136 (337)
                      ..+|.+.+++.+.++++++.|+.++..++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            45566666666666666666666665543

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.67  E-value=4.1  Score=34.89  Aligned_cols=211  Identities=12%  Similarity=0.162  Sum_probs=124.4

Q ss_pred             hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh------hH--H-hhHHHHHHHHhcCCchHHHHHHHHHhh
Q 019679          103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID------LL--S-QSLLPAIVELAEDRHWRVRLAIIEYIP  172 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~------~~--~-~~llp~l~~~~~d~~~~vr~~~~~~l~  172 (337)
                      +.....+++.+...+..=+.+.|+.+...+..+...- +..      .+  . +.++..+...-++++...-.+.  .+.
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~--mlR  148 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGD--MLR  148 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHH--HHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHH--HHH
Confidence            3344677788888888888889998888888776552 211      11  1 3455555555555443221111  111


Q ss_pred             HhHhh--hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHH---HhhHHHHHHHhhcCcchHHHHH
Q 019679          173 LLASQ--LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMT  244 (337)
Q Consensus       173 ~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~---~~~l~~~l~~~~~~~~~~vR~~  244 (337)
                      ..++.  +......+..+--+++....++-+|-..|..++..+.....   .+.+   .+.++..+..++.++++-.|..
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            11100  00000011122235577788888999999888888765431   1111   3457778888999999999999


Q ss_pred             HHHHHHHhccccC-hHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-H-------HHHHhhhHHHHh
Q 019679          245 ILQAISLLAPVMG-SEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------VVEKSIRPCLVE  310 (337)
Q Consensus       245 ~~~~l~~l~~~~~-~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-------~~~~~i~~~l~~  310 (337)
                      ++..++.+...-. ...     -.+.-+-.+..+|.|++..+|..|...+.-+...-.. +       ...++++..|..
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~  308 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKD  308 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHT
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHh
Confidence            9999999852211 111     1234677889999999999999999999988754221 1       113567777777


Q ss_pred             hhCCC
Q 019679          311 LSEDP  315 (337)
Q Consensus       311 l~~d~  315 (337)
                      +..|+
T Consensus       309 f~~~~  313 (335)
T PF08569_consen  309 FHTDR  313 (335)
T ss_dssp             TTTT-
T ss_pred             CCCCC
Confidence            77776

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=7.1  Score=37.40  Aligned_cols=172  Identities=12%  Similarity=0.150  Sum_probs=114.5

Q ss_pred             HHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc-----HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-
Q 019679           45 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-  118 (337)
Q Consensus        45 ~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-  118 (337)
                      ..|+..-.++...-+.++ +...+.+...+.+++.|.+     |..-++++..+-.+++..|...  ...+|.+.+.+- 
T Consensus       439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as  515 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS  515 (982)
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence            466666666666655555 3334556666777776655     7778888999999999888643  345666666542 


Q ss_pred             ----CCChhHHHHHHHhHHHhHhhhchhh-HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHH
Q 019679          119 ----DEFPDVRLNIISKLDQVNQVIGIDL-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALC  191 (337)
Q Consensus       119 ----d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l  191 (337)
                          ..++..-..+...++.++...+... ..+..+|.+...+..+.  .-..+...+..+++.+..+  .+.+.++..+
T Consensus       516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~  593 (982)
T KOG2022|consen  516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVC  593 (982)
T ss_pred             cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence                2367788888999999988877543 34667777777775433  3333445577777766443  2445555555


Q ss_pred             HHHccc--cchHHHHHHHHHHHHHHHHhChHH
Q 019679          192 MQWLKD--KVYSIRDAAANNVKRLAEEFGPDW  221 (337)
Q Consensus       192 ~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~  221 (337)
                      ...+..  -....|....+++|.+.....++.
T Consensus       594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe  625 (982)
T KOG2022|consen  594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE  625 (982)
T ss_pred             HHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence            555544  345889999999999998887554

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.40  E-value=1.5  Score=31.95  Aligned_cols=72  Identities=11%  Similarity=0.193  Sum_probs=36.3

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---HHH-hhhHhhHHhcCC---CcHHHHHHHHHHHHhcCcccC
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---AIQ-HILPCVKELSSD---SSQHVRSALATVIMGMAPILG  101 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~---~~~-~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~  101 (337)
                      +.+..+.+-+.++++.+...|+..+..+.+++++..   +.. ..+.-+.+++.+   .++.||.-+++.+......++
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            455555555666666666666666666666555531   111 222223333332   344566665555555555444

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=93.38  E-value=4.8  Score=36.71  Aligned_cols=138  Identities=16%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH----hhhHH
Q 019679           36 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI----EQLLP  111 (337)
Q Consensus        36 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~  111 (337)
                      .....|-++.+|..+...+.......+.....-..+.....++.|.+..||....+.+..++...+.-...    +-...
T Consensus       281 vsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~  360 (740)
T COG5537         281 VSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD  360 (740)
T ss_pred             hhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34456788999999999999888887776555556777778899999999999999999998766543222    23334


Q ss_pred             HHHHhh-cCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          112 IFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       112 ~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      .+++++ .|.+- ||..+++.+..+....--+   ..-+..+..+.-|..+.-|....+.+..+++.
T Consensus       361 rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~  423 (740)
T COG5537         361 RILEFLRTDSDC-VRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICKI  423 (740)
T ss_pred             HHHHHHhhccch-hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            444444 45555 9999999988776542211   11222233334444444444444444444443

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.38  E-value=9.9  Score=38.44  Aligned_cols=216  Identities=15%  Similarity=0.172  Sum_probs=122.2

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhhc---CCChhHHHHHHHhHHHhHhhh----chhhHHhh
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVI----GIDLLSQS  147 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~  147 (337)
                      ....+...||....+++..+.+..|.....  ..+..++-....   .+...+-..+..++.-+...+    +.+.+ ..
T Consensus       850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~~  928 (1610)
T KOG1848|consen  850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-LD  928 (1610)
T ss_pred             HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-HH
Confidence            344566688888889999998888754433  233333333322   223455555666665555432    22222 33


Q ss_pred             HHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhCh-----------------------------hhHHHHHHHHHHHHccc
Q 019679          148 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV-----------------------------GFFDDKLGALCMQWLKD  197 (337)
Q Consensus       148 llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d  197 (337)
                      ++..+..+. +..+-.+--.++..+..+..++..                             +..--.++..+.++..|
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence            444443333 223333444444444444433211                             00011244455566788


Q ss_pred             cchHHHHHHHHHHHHHHHHhChH-----H---HHhhHHHHHHHhh-c-CcchH-------HHHHHHHHHHHhccccChH-
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPD-----W---AMQHIVPQVLEMI-N-NPHYL-------YRMTILQAISLLAPVMGSE-  259 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~-----~---~~~~l~~~l~~~~-~-~~~~~-------vR~~~~~~l~~l~~~~~~~-  259 (337)
                      +-.+||..|++++=++....|..     |   +-..++|.+-..- + -..|.       --++.+..++.++..+... 
T Consensus      1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred             chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence            89999999999999998877642     1   1223444332100 0 01121       2245667777776654322 


Q ss_pred             ----------HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          260 ----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       260 ----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                                ...+.++.++..+..|.++++..++++++..+..
T Consensus      1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence                      2356788889999999999999999999988864

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.36  E-value=7.1  Score=36.71  Aligned_cols=115  Identities=11%  Similarity=0.023  Sum_probs=85.2

Q ss_pred             hHHHHhhHHHHHHHhhcC--------cchHHHHHHHHHHHHhccccChH-----HHHhhHHHHHHhhccCCChhHHHHHH
Q 019679          219 PDWAMQHIVPQVLEMINN--------PHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVA  285 (337)
Q Consensus       219 ~~~~~~~l~~~l~~~~~~--------~~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~  285 (337)
                      ++...+.+++.+...+..        .+.+..+.+++.+.++...+.+.     .+..-+++++...+.++.--.|.+++
T Consensus       402 ke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac  481 (970)
T COG5656         402 KEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC  481 (970)
T ss_pred             chhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence            344466788888888731        24666778888888876543321     12334677888888999999999999


Q ss_pred             HHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          286 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       286 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ..++.+...+..............+++++.+-.|+..|+-|+.-+...
T Consensus       482 e~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~  529 (970)
T COG5656         482 EFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN  529 (970)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence            999999777776666667777777888888888999999999877653

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=93.17  E-value=2.6  Score=31.07  Aligned_cols=87  Identities=7%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      ..+..+..-+++++..+...|+..+..+...+|..+.    ...++..+..++. ..++.||..++..+..++..++++.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~  120 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP  120 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence            4666777777888888888899999999988886543    2356666766665 4567899999999999988876542


Q ss_pred             HHHhhhHHHHhh
Q 019679          300 VEKSIRPCLVEL  311 (337)
Q Consensus       300 ~~~~i~~~l~~l  311 (337)
                      -...+......|
T Consensus       121 ~l~~i~~~y~~L  132 (142)
T cd03569         121 QLKYVVDTYQIL  132 (142)
T ss_pred             ccHHHHHHHHHH
Confidence            223344444333

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=93.01  E-value=5.4  Score=34.36  Aligned_cols=206  Identities=15%  Similarity=0.129  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc-----
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-----  157 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-----  157 (337)
                      .+-+..+.+.++++-..++.  ..+.-+..-+.++.|.+..||..|++.|+.+++.   +.+ ..+.+.+.++++     
T Consensus        38 ~k~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~-~rv~d~l~qLLnk~sl~  111 (460)
T KOG2213|consen   38 SKEKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DAL-SRVNDVLVQLLNKASLT  111 (460)
T ss_pred             hHHHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC---chh-hhhHHHHHHHHHHHHHH
Confidence            34556667777777666653  2344556666777777778888888887777764   111 222222222211     


Q ss_pred             -------CCchHHHHHHHHHhhHhHhhhChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHHH
Q 019679          158 -------DRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAM  223 (337)
Q Consensus       158 -------d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~  223 (337)
                             -.+..+|.-+...+..=.-.++.+    .....++.-+...|.|-..+--......|+.+.. ++   ++.-.
T Consensus       112 ~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~-~~~k~~~a~l  190 (460)
T KOG2213|consen  112 GLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS-LQTKAGEARL  190 (460)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc-ccCCCCHHHH
Confidence                   124556665555444322222222    2334455555666666555433333333333321 11   11112


Q ss_pred             hhHHHHHHHh-----h--cCcchHHH--HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCC-hhHHHHHHHHHHHHhh
Q 019679          224 QHIVPQVLEM-----I--NNPHYLYR--MTILQAISLLAPVMGSEITCSQLLPVVINASKDRV-PNIKFNVAKVLQSLIP  293 (337)
Q Consensus       224 ~~l~~~l~~~-----~--~~~~~~vR--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~  293 (337)
                      +.+...+...     +  .|.++--|  .++..+++.++....+..|..++-..+...-.|.. .+.+....++|+.+..
T Consensus       191 qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss  270 (460)
T KOG2213|consen  191 QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSS  270 (460)
T ss_pred             HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCc
Confidence            2233322222     1  12232222  33444455555555444333332222222223332 3455567777777765


Q ss_pred             hh
Q 019679          294 IV  295 (337)
Q Consensus       294 ~~  295 (337)
                      ..
T Consensus       271 ~t  272 (460)
T KOG2213|consen  271 YT  272 (460)
T ss_pred             cc
Confidence            54

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=93.01  E-value=0.35  Score=36.53  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=55.6

Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH--hhhHHHHHHhh
Q 019679           41 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLL  117 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l  117 (337)
                      |.--++|++|.+++..+.+.+........++..+...+.| +..+|..+...+.+++...+.....  +.+.+.+...+
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L  115 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL  115 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence            4456899999999999988766554455667888888999 8899999999999998776654433  45666666555

; PDB: 4A0C_A 1U6G_C.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.95  E-value=2.6  Score=30.87  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=36.7

Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhhh
Q 019679          266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED------PDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +-.+.+-++.+++.|...|+..|..+.+.+|..+.    ...++..|.++..+      .+.+|+..+...+...+..|+
T Consensus        40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            34444555556666666666666666666555321    12334444444432      345566666666666665554

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.95  E-value=2.7  Score=38.73  Aligned_cols=280  Identities=16%  Similarity=0.068  Sum_probs=141.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -+..+.+.+..+++.++..++-.++-....+..+  .+-.+-.+...++.++..+|..++-.++..-.-...+    ++.
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e----~V~  489 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE----EVL  489 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH----HHH
Confidence            4556666666666666766666655443332221  1224445666677788888888888777654433322    333


Q ss_pred             HHHHHhhcCCChh--HHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679          111 PIFLSLLKDEFPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK  186 (337)
Q Consensus       111 ~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  186 (337)
                      ..+...+.|.++.  |..-+.-+++.+.-..-.+.+...++..+.+..+  -++...|-..+   +.-.-++|+...   
T Consensus       490 ~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~L---GL~llflgkqe~---  563 (878)
T KOG2005|consen  490 ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLAL---GLALLFLGKQES---  563 (878)
T ss_pred             HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHH---HHHHHHhcccch---
Confidence            3555555665544  5555555555543222233444566666655432  12223443332   112223343322   


Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH--H--hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--M--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  262 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~--~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  262 (337)
                       .+.+.+.++.-+..+|..+- .+-..+...|.-..  .  +.++...-+...+... ...-++.-+..+  ..|.+.-.
T Consensus       564 -~d~~~e~~~~i~~~~~~~~~-~lv~~caYaGTGnvl~Iq~q~ll~~cgE~~~~~e~-~~~~avLgiAli--AMgeeig~  638 (878)
T KOG2005|consen  564 -VDAVVETIKAIEGPIRKHES-ILVKSCAYAGTGNVLKIQSQLLLSFCGEHDADLES-EQELAVLGIALI--AMGEEIGS  638 (878)
T ss_pred             -HHHHHHHHHHhhhHHHHHHH-HHHHHhhccccCceEEechhhhhhhcCCCccchhh-hccchhhhhhhh--hhhhhhhh
Confidence             22222223322333333322 22222222222111  1  1111111111111111 111222222222  23444334


Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      +..+-.+-.++.-.++.+|++.=-+++.++-. .++   -.+++.|.++..|.+.+|-..++-+++.+.
T Consensus       639 eM~lR~f~h~l~yge~~iRravPLal~llsvS-NPq---~~vlDtLsk~shd~D~eva~naIfamGLiG  703 (878)
T KOG2005|consen  639 EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVS-NPQ---VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG  703 (878)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccC-CCc---chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence            45667777788888899999998888888532 221   378899999999999999999888887653

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.91  E-value=2.9  Score=30.90  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~  153 (337)
                      ...++|..-...|..+..= . .|    ..+.+..+.+-+...++.|...|+..+..+++..|...    -...++..+.
T Consensus        13 l~~~dw~~il~icD~I~~~-~-~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKSD-E-NG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhcC-C-cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            3456787777777766542 1 12    24566777777788889999999999999998888533    2345666777


Q ss_pred             HHhcC-CchHHHHHHHHHhhHhHhhhCh
Q 019679          154 ELAED-RHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       154 ~~~~d-~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      .++.+ .+..||.-+++.+..++..+..
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            77766 6677888888888887777653

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.79  E-value=3  Score=30.76  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             hhHHhcCCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhc
Q 019679           73 CVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG  140 (337)
Q Consensus        73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~  140 (337)
                      .+++-++++++.+...|+..+..+...+|.    +.....++..+..++. ..++.|+..++..+......++
T Consensus        45 al~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          45 ALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            333334444444444444444444443332    2233333344444443 2334455544444444444443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=92.79  E-value=2.6  Score=30.66  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=48.2

Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC---CCccHHHHHHHHHHHHHHhhhC
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED---PDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d---~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      ..+..+.+-+..+++.++..|+..|..+.+.+|..+.    ...++.-|..+..+   .+..||..+.+.+...+..|+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4455666667777788888888888888777776422    12344445555543   3667888888888888777764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=92.56  E-value=6.8  Score=34.36  Aligned_cols=290  Identities=11%  Similarity=0.080  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHhHHHHHHhhCH-H-----HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh--hH-----Hh
Q 019679           41 DNEAEVRIAAAGKVTKICRILNP-E-----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--AT-----IE  107 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~~~~-~-----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~-----~~  107 (337)
                      ..+..|+.....+++...+.-.. .     .+...++..+.+..+.++..|-..+++++|+++-.-.+.  ..     .+
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            34566788888888777643111 1     223446788888888889999999999999998532211  11     12


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-ch-----hhHHhhHHHHHHHHhcC--CchH----HHHHHHHHhhHhH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLLSQSLLPAIVELAED--RHWR----VRLAIIEYIPLLA  175 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~-----~~~~~~llp~l~~~~~d--~~~~----vr~~~~~~l~~l~  175 (337)
                      .++..+..++...+|.--+...-..+.+...+ +.     +...-.++|.+.....-  .+..    ........++..+
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            34555555555444332222222222222221 11     12222355544443311  1111    1111222222222


Q ss_pred             hhhChhhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcC-cchHHHHHHHHHHHH
Q 019679          176 SQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINN-PHYLYRMTILQAISL  251 (337)
Q Consensus       176 ~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~  251 (337)
                      +.+.+-.+...+.-.+.+++.. .++..++.....+...++.-..  ......++..+.++... +...-+.-.+..+..
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence            2221111111222223333322 2344555555555544332100  01112233333333332 111111112222222


Q ss_pred             hcc-----ccChHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh------hcHHHHHHhhhHHHHh-hhCC
Q 019679          252 LAP-----VMGSEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI------VDQSVVEKSIRPCLVE-LSED  314 (337)
Q Consensus       252 l~~-----~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~------~~~~~~~~~i~~~l~~-l~~d  314 (337)
                      .++     ..|.+.     ..++++..+...+...+......+.-+++.++..      +-.+.+.++++..|.+ --.|
T Consensus       293 ~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd  372 (604)
T KOG4500|consen  293 IAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD  372 (604)
T ss_pred             hhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            221     123222     1335788888888888888888899999998743      2223444555555544 3345


Q ss_pred             CCccHHHHHHHHHHHH
Q 019679          315 PDVDVRFFATQALQSK  330 (337)
Q Consensus       315 ~~~~vr~~a~~al~~l  330 (337)
                      .+.+++..+..||..+
T Consensus       373 gnV~~qhA~lsALRnl  388 (604)
T KOG4500|consen  373 GNVERQHACLSALRNL  388 (604)
T ss_pred             ccchhHHHHHHHHHhc
Confidence            5667777788887765

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.40  E-value=6.5  Score=33.73  Aligned_cols=185  Identities=14%  Similarity=0.080  Sum_probs=96.7

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHH-------HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAI-------QHILPCVKELSSDSSQHVRSALATVIMGMAPI   99 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~-------~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~   99 (337)
                      .+++.+...+..-+-+.|+.+...+..+...-...   ...       ..++..+...-++++.  -..+-..+....+.
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k~  153 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIKH  153 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHhh
Confidence            35666666666666777777777776665542111   011       2234444444444332  12222222222211


Q ss_pred             --cChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhH---HhhHHHHHHHHhcCCchHHHHHHHHHh
Q 019679          100 --LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYI  171 (337)
Q Consensus       100 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l  171 (337)
                        +-........+..+.+.+..++.+|-..|..++..+...-.   .+.+   .+.++..+..++.++++-+|..++..+
T Consensus       154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL  233 (335)
T PF08569_consen  154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL  233 (335)
T ss_dssp             HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence              00011112233345566777778888888877776554311   1111   134555667777888888888888888


Q ss_pred             hHhHhhhChh------hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679          172 PLLASQLGVG------FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  216 (337)
Q Consensus       172 ~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  216 (337)
                      +.+...-...      ...+.-+..++.+|+|++..++..|...+.-+...
T Consensus       234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            8776433211      12345677778888888888888887777766543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=91.98  E-value=6.8  Score=33.09  Aligned_cols=138  Identities=15%  Similarity=0.157  Sum_probs=94.9

Q ss_pred             HHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhChHHHHh---hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679          186 KLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQ---HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  261 (337)
Q Consensus       186 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~  261 (337)
                      .+-..+.++|+=. ...|...|+.....+.+.+|++...+   ...|-+..++...+-.||-..+..+...--.+|. ..
T Consensus        54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L  132 (307)
T PF04118_consen   54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-AL  132 (307)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HH
Confidence            3444555555533 34788888889888888888775432   3445566666777788888888888876656665 33


Q ss_pred             H---hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          262 C---SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       262 ~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      .   ..++..++..+.|+..++-..+.+.+..+...++.+.|...+--.+.     .++++|..|..-+..
T Consensus       133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~  198 (307)
T PF04118_consen  133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLR  198 (307)
T ss_pred             HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHH
Confidence            3   34555566667888899999999999999988888765554443333     467777777666554

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=91.86  E-value=0.59  Score=35.32  Aligned_cols=62  Identities=18%  Similarity=0.243  Sum_probs=51.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE   64 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~   64 (337)
                      |.--.+|+++-+++..+............++..+...+.| +..+|..+...+.+++...+..
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~   99 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE   99 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence            5566899999999999999888877777889999999999 9999999999999998765443

; PDB: 4A0C_A 1U6G_C.

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.68  E-value=8.2  Score=34.97  Aligned_cols=280  Identities=14%  Similarity=0.066  Sum_probs=136.8

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -+..+.+.+....+.++..++-.++--+...-.  -.+-.+-.+.+.++.++...+.+++-.++..-.-...    ++++
T Consensus       414 gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~--E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~----eevl  487 (881)
T COG5110         414 GLETLDKYLYADESYRKAGALLGIGLSGLRVFE--ERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQA----EEVL  487 (881)
T ss_pred             hHHHHHHHHhcCcccccccceeeeeeccccccc--ccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcH----HHHH
Confidence            455666666555555555555444322211111  1233455667778888888888888777765543333    3444


Q ss_pred             HHHHHhhcCCCh--hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679          111 PIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK  186 (337)
Q Consensus       111 ~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  186 (337)
                      ..+....-+.+.  ++..-+.-+++.+.-..-...+...++..+.+.-+  .+..-+|..++.   .-.-+.|...-.+.
T Consensus       488 ~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~ts~ilqtf~Er~~~e~~tqw~RFlaLg---La~Lf~g~~d~~d~  564 (881)
T COG5110         488 ELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLTSLILQTFVERGKIESETQWFRFLALG---LASLFYGRKDQVDD  564 (881)
T ss_pred             HHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHHHccccchhHH
Confidence            555555545555  44444444444432211123444566666665432  222224444322   22222333322222


Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc---chHHHHHHHHHHHHhc---cccChHH
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLA---PVMGSEI  260 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vR~~~~~~l~~l~---~~~~~~~  260 (337)
                      +...+.. ++.+-    ......+...+...|.-.  ..++..++....+.   ....-.+.++.++.++   -..|.+.
T Consensus       565 v~eti~a-Ieg~l----s~~~eiLv~~c~Y~GTGd--vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedi  637 (881)
T COG5110         565 VEETIMA-IEGAL----SKHEEILVKGCQYVGTGD--VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDI  637 (881)
T ss_pred             HHHHHHH-hcchh----hhhHHHHHhhceecccCc--HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchh
Confidence            2222211 11100    011112222222222111  01222222221111   1122234444444432   2245554


Q ss_pred             HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      -.+.++-++..++.-.++.+|...=-+++.+...-+    ...+++.|.+..+|.+-+|-..++-|++-+
T Consensus       638 g~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIfamGLi  703 (881)
T COG5110         638 GSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIFAMGLI  703 (881)
T ss_pred             hHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHHHhhcc
Confidence            455677777788888888999888777777754222    246788888889998888888877776654

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=91.32  E-value=2.9  Score=30.39  Aligned_cols=71  Identities=11%  Similarity=0.089  Sum_probs=37.6

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCCCC--ccHHHHHHHHHHHHHHhhh
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d~~--~~vr~~a~~al~~l~~~~~  335 (337)
                      .+..+.+-+..+++.+...|+..|..+.+.+|....    ...++..|..+..++.  +.|+..+...+...+..|+
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            344455555556666666666666666666555321    2334455555444432  1266666666666665554

Unpublished observations. Domain of unknown function.

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=91.26  E-value=4  Score=29.03  Aligned_cols=35  Identities=20%  Similarity=0.129  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHh
Q 019679          183 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       183 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~  217 (337)
                      +...++|.+.+.++ ...++.|-++...++.++...
T Consensus         3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~   38 (121)
T PF12397_consen    3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV   38 (121)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc
Confidence            34556777777776 566677777777777776554

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.01  E-value=20  Score=36.53  Aligned_cols=215  Identities=13%  Similarity=0.130  Sum_probs=122.8

Q ss_pred             hhcCCChhHHHHHHHhHHHhHhhhchhhHH--hhHHHHHHHH---hcCCchHHHHHHHHHhhHhHhh----hChhhHHHH
Q 019679          116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQ----LGVGFFDDK  186 (337)
Q Consensus       116 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~llp~l~~~---~~d~~~~vr~~~~~~l~~l~~~----~~~~~~~~~  186 (337)
                      .+....-+||.....++-.+.+..|.-.+.  +.++..+...   .......+-.....++..++.-    ++.. ....
T Consensus       850 ~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s-ci~~  928 (1610)
T KOG1848|consen  850 DNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS-CILD  928 (1610)
T ss_pred             HhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH-HHHH
Confidence            344566799999999999999888754331  2233333322   2222233333334444444432    2332 2344


Q ss_pred             HHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhCh-------H-----------------HHH-h----hHHHHHHHhhcC
Q 019679          187 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP-------D-----------------WAM-Q----HIVPQVLEMINN  236 (337)
Q Consensus       187 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~-------~-----------------~~~-~----~l~~~l~~~~~~  236 (337)
                      +++.+..+-+ .++.++--.|+..+..+++.+..       +                 +.. +    -++.++.++..|
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence            5665555443 23445555555555555544311       1                 111 1    245677777788


Q ss_pred             cchHHHHHHHHHHHHhcccc----ChHH----HHhhHHHHHHhhcc---CCC--hhH----HHHHHHHHHHHhhhhcHH-
Q 019679          237 PHYLYRMTILQAISLLAPVM----GSEI----TCSQLLPVVINASK---DRV--PNI----KFNVAKVLQSLIPIVDQS-  298 (337)
Q Consensus       237 ~~~~vR~~~~~~l~~l~~~~----~~~~----~~~~l~~~l~~~l~---d~~--~~v----r~~a~~~l~~i~~~~~~~-  298 (337)
                      ....||-.|++.+=++....    +...    +...++|.+-..-.   ++.  .++    -...+.+++.+++.+... 
T Consensus      1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred             chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence            88999999998888875443    4432    33445555541100   111  122    123456677777665442 


Q ss_pred             ----------HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          299 ----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       299 ----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                                ...+.++..++.+..|.++++...|++++..+.
T Consensus      1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence                      345788899999999999999999999988764

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=90.95  E-value=13  Score=40.47  Aligned_cols=217  Identities=15%  Similarity=0.183  Sum_probs=123.8

Q ss_pred             HHHHhhcCCChhHHHHHHHhHHHhHhhhch------hhH--HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI------DLL--SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~--~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      .+...+...++++|..+......+......      -..  .+.++..+..+ +.|.++.+|......+.   ..+.+..
T Consensus       485 ~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~l  561 (2341)
T KOG0891|consen  485 CVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQL  561 (2341)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhh
Confidence            355566677899999997766655544221      111  23444444433 46778888888777766   3333333


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc----CcchHHHHHHHHHHHHhccc--c
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPV--M  256 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~vR~~~~~~l~~l~~~--~  256 (337)
                      ..+..+...+..+.|..-.++.++...++.++..- +....+.+-....+..+    +...++......-+..+...  .
T Consensus       562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~-~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYN-PAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             cCchhHHHHHHHhhhhhhhhHHhHHhhcccccccc-HHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            34456667788889999999999999988776532 22222222222222222    22222322222222222111  1


Q ss_pred             ChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC-CccHHHHHHHHHHHHHH
Q 019679          257 GSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ  332 (337)
Q Consensus       257 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~l~~  332 (337)
                      .-..+...++-.+...+.|+...+-.++..+++.++...|.+  ......++.+.+...|. ...-|..+-++++.+.+
T Consensus       641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            122334455566677778888888889999999998877732  22234444444444443 45567777787777654

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=90.89  E-value=0.54  Score=23.82  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcC
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD  119 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  119 (337)
                      |.||..++.+|+++..        +..++.+.+.++|
T Consensus         1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            4578888888887753        3344566666554

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=90.81  E-value=4.3  Score=28.56  Aligned_cols=37  Identities=16%  Similarity=0.175  Sum_probs=27.0

Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI  260 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~  260 (337)
                      ..++..+..-+++++|++...++..+..+...+|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            3466667777777788888888888888877777653

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=90.74  E-value=3.3  Score=38.49  Aligned_cols=174  Identities=17%  Similarity=0.102  Sum_probs=96.6

Q ss_pred             CCChHHHHHHHHHhHHHHHHhhCHH-----------HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh-
Q 019679           40 RDNEAEVRIAAAGKVTKICRILNPE-----------LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE-  107 (337)
Q Consensus        40 ~d~~~~vR~~a~~~l~~~~~~~~~~-----------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-  107 (337)
                      +.++...|..-+.++..++-.+-|.           .+.+.++..+..-.++.+..+|-.+++.+.++...+|-..... 
T Consensus       206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf  285 (993)
T COG5234         206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF  285 (993)
T ss_pred             cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence            4455667777666777666544331           3445566666667778888999999999999888776432211 


Q ss_pred             -hhHHH-----HHHhhc------CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc--------CCchHHHHHH
Q 019679          108 -QLLPI-----FLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAI  167 (337)
Q Consensus       108 -~l~~~-----l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~--------d~~~~vr~~~  167 (337)
                       +++..     +.+.++      +.++.+-..++.-++ +++..+.+-..-.+.|.+.+.++        .+-..+|.++
T Consensus       286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss  364 (993)
T COG5234         286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS  364 (993)
T ss_pred             HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence             12221     222222      234555555555554 44433322221224454444331        1122467776


Q ss_pred             HHHhhHhHhhhChhh---HHHHHHHHHHH-HccccchHHHHHHHHHHHHHH
Q 019679          168 IEYIPLLASQLGVGF---FDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLA  214 (337)
Q Consensus       168 ~~~l~~l~~~~~~~~---~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~  214 (337)
                      .-.+..+........   ....+.-.+++ .+-|++-.+|.+|..++-...
T Consensus       365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~i  415 (993)
T COG5234         365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVI  415 (993)
T ss_pred             ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHh
Confidence            666665554432211   22334555555 788999999999887776554

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=90.71  E-value=5.5  Score=35.23  Aligned_cols=147  Identities=15%  Similarity=0.072  Sum_probs=87.9

Q ss_pred             HHHHHHHHccccc--hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccC---hHH
Q 019679          187 LGALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMG---SEI  260 (337)
Q Consensus       187 l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~---~~~  260 (337)
                      .++.++.++..++  ..||-.+.+.|.++...-..+.+...-+..++.+.+.+. .......+..++.+-+...   ...
T Consensus       181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L  260 (832)
T KOG3678|consen  181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL  260 (832)
T ss_pred             hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4455556665544  478999999999887654444444444556666655433 2222333444444432211   111


Q ss_pred             HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          261 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       261 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      .....++.++-......+.+-+.++-+|++++-+-|..    .+...+...|-.+....|.-.|+.||-|+..++..
T Consensus       261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN  337 (832)
T ss_pred             HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence            22234555555566666777777888888886554432    33445666666677777888899999999888754

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=90.53  E-value=4.8  Score=28.64  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=39.1

Q ss_pred             HhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhChhh-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHh
Q 019679          145 SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  217 (337)
Q Consensus       145 ~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  217 (337)
                      ...++|.+.+.++ ......|.++...++.++....-.. ..+.++..+.........  ...++.++..+.+..
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            4567777777776 6666777777777777776653221 122233333222222222  355666777666554

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.42  E-value=35  Score=38.47  Aligned_cols=151  Identities=15%  Similarity=0.196  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHh----Ch-H-----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF----GP-D-----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  254 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~-~-----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~  254 (337)
                      ..+++.+...++.++.+++.+...++..+....    |. +     .+...+++.+..+.-++.|..|...+..|+.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            457888889999999999999999998886543    31 1     2356688888888889999999999988888877


Q ss_pred             ccChHHH---HhhHHHHHHhhccCCChhHHH----HHHHHHHHHhhhh----cH-----HHHHHhhhHHHHhhhCCCCcc
Q 019679          255 VMGSEIT---CSQLLPVVINASKDRVPNIKF----NVAKVLQSLIPIV----DQ-----SVVEKSIRPCLVELSEDPDVD  318 (337)
Q Consensus       255 ~~~~~~~---~~~l~~~l~~~l~d~~~~vr~----~a~~~l~~i~~~~----~~-----~~~~~~i~~~l~~l~~d~~~~  318 (337)
                      .......   ...++..+.-.+.|...++..    .+-..+..+...+    +.     ....+.+-++...+. +++..
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~-npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF-NPNSD 1141 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchH
Confidence            7764433   234555566666666555444    2333333333222    11     122333444444444 56779


Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 019679          319 VRFFATQALQSKDQVMMS  336 (337)
Q Consensus       319 vr~~a~~al~~l~~~~~~  336 (337)
                      ||..+.+.|..+....|.
T Consensus      1142 VR~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGK 1159 (3550)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            999999999999887654

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=90.42  E-value=8.5  Score=31.30  Aligned_cols=119  Identities=13%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHHh----Ch------HH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC--h---
Q 019679          195 LKDKVYSIRDAAANNVKRLAEEF----GP------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG--S---  258 (337)
Q Consensus       195 l~d~~~~vr~~a~~~l~~~~~~~----~~------~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~--~---  258 (337)
                      ++|+++.|.+.++.+...+....    ..      .| ....+-..+...+.+.++.+|.+++.++..+.....  .   
T Consensus         2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~   81 (239)
T PF11935_consen    2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS   81 (239)
T ss_dssp             CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence            55666666666666665554331    00      01 123455566667777788889888888887642211  0   


Q ss_pred             ---------------------------HHHHhhHHHHHHhhccCCC--hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHH
Q 019679          259 ---------------------------EITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV  309 (337)
Q Consensus       259 ---------------------------~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~  309 (337)
                                                 +.....++..++..+.++.  +.+=.+++.+|..+++.=+  .+...+++.|.
T Consensus        82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll  159 (239)
T PF11935_consen   82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALL  159 (239)
T ss_dssp             ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHH
T ss_pred             ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence                                       0112357788888887776  5666677888888876433  24567888888


Q ss_pred             hhhCCC
Q 019679          310 ELSEDP  315 (337)
Q Consensus       310 ~l~~d~  315 (337)
                      .+-.+.
T Consensus       160 ~~~~~~  165 (239)
T PF11935_consen  160 SFNPNL  165 (239)
T ss_dssp             HHHHS-
T ss_pred             hcCccc
Confidence            765543

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=90.23  E-value=1.9  Score=31.61  Aligned_cols=81  Identities=22%  Similarity=0.317  Sum_probs=49.7

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHH-hhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~-~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      +++-..+..++.+++++|++.|+.++...-. .+.+     + -..+..+++|..  .|.........-....-++....
T Consensus        16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~p-----Y-~d~L~~Lldd~~--frdeL~~f~~~~~~~~I~~ehR~   87 (141)
T PF07539_consen   16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTP-----Y-KDNLENLLDDKT--FRDELTTFNLSDESSVIEEEHRP   87 (141)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHh-----H-HHHHHHHcCcch--HHHHHHhhcccCCcCCCCHHHHh
Confidence            4677788899999999999999999987644 2111     1 234556777764  44444433322211111234567


Q ss_pred             hhHHHHHHhh
Q 019679          108 QLLPIFLSLL  117 (337)
Q Consensus       108 ~l~~~l~~~l  117 (337)
                      .++|++++.+
T Consensus        88 ~l~pvvlRIL   97 (141)
T PF07539_consen   88 ELMPVVLRIL   97 (141)
T ss_pred             HHHHHHHHHH
Confidence            7888887776

It is believed to be involved in processing of non-coding RNA [].

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=90.10  E-value=15  Score=33.73  Aligned_cols=104  Identities=11%  Similarity=0.053  Sum_probs=56.9

Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHH-HhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-hH---HHH
Q 019679          188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SE---ITC  262 (337)
Q Consensus       188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~---~~~  262 (337)
                      ...++....|-.+.+|..+...++...+.+ ++.+ .-..+.+.-=.+.|.+..+|......+..++.... .+   .+.
T Consensus       277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lv-P~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLV-PDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHhcc-hHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            344455666777777777777776666555 2322 22233334444556666777777666666654332 11   234


Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      +.+..-++..+.-...-||..+++.+..+.
T Consensus       356 eRFk~rILE~~r~D~d~VRi~sik~l~~lr  385 (740)
T COG5537         356 ERFKDRILEFLRTDSDCVRICSIKSLCYLR  385 (740)
T ss_pred             HHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence            445555555543333337777777666664

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=90.04  E-value=17  Score=34.31  Aligned_cols=302  Identities=15%  Similarity=0.158  Sum_probs=159.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHH-HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hh-
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA-  104 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~-~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~-  104 (337)
                      .-+|....++...++.+...|...+..++-.-.+  ..+ .-.-+|.+..++...+..|+..+|-++.++.---.. +. 
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            3467777888888888887777666655432211  111 222577888899999999999999999998732211 11 


Q ss_pred             ---HHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhh--hchhhHHhhHHHHHHHHh-------cCCc-------hHHH
Q 019679          105 ---TIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELA-------EDRH-------WRVR  164 (337)
Q Consensus       105 ---~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~llp~l~~~~-------~d~~-------~~vr  164 (337)
                         ....=+|.+.++++. .|.+||+.+.-.+=.+.+.  +.... ...-++.+...+       .+++       ..+=
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHH-HHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence               112235667777764 4678887776555555443  11110 111112221110       0000       0011


Q ss_pred             HHH------------------------HHHhhHhHhh-hChhhHHHHHHHHHHHHccccchHHHH---------------
Q 019679          165 LAI------------------------IEYIPLLASQ-LGVGFFDDKLGALCMQWLKDKVYSIRD---------------  204 (337)
Q Consensus       165 ~~~------------------------~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~d~~~~vr~---------------  204 (337)
                      ..+                        +..|..+++. .+.....++-++-++..+..-++.+..               
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            111                        2222222221 112112222333333333222222220               


Q ss_pred             --------HHHHHHHHHHHH---------h--------ChHHH-HhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccC
Q 019679          205 --------AAANNVKRLAEE---------F--------GPDWA-MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       205 --------~a~~~l~~~~~~---------~--------~~~~~-~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                              ....+++.-.+.         +        |.++. .+.++..-+.++. ..+..+-++++.++..+....+
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                    011112211111         0        01111 2334444333333 4557788888888888864433


Q ss_pred             h-------HH-HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCC------CccHHHH
Q 019679          258 S-------EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDP------DVDVRFF  322 (337)
Q Consensus       258 ~-------~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~------~~~vr~~  322 (337)
                      .       .. ..+..+|.+..++...+..|..+++.+|..++-...+. .+..+.+|-|...+.+.      ++++-..
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence            2       11 24567899999999999999999999999998766554 33356666666666553      3566677


Q ss_pred             HHHHHHHHHH
Q 019679          323 ATQALQSKDQ  332 (337)
Q Consensus       323 a~~al~~l~~  332 (337)
                      ++..|..+.+
T Consensus       632 vc~tl~niv~  641 (717)
T KOG1048|consen  632 VCHTLNNIVR  641 (717)
T ss_pred             HHHhHHHHHH
Confidence            7777777763

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=89.68  E-value=8.3  Score=30.09  Aligned_cols=102  Identities=12%  Similarity=-0.007  Sum_probs=63.7

Q ss_pred             cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC
Q 019679          196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD  275 (337)
Q Consensus       196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  275 (337)
                      .-++|.+-...+..+..-...-      ....+.+.....+++..+|.+++..+......   +.....+++.+...+.|
T Consensus        82 ~~~~W~~~D~~~~~~~~~~~~~------~~~~~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d  152 (197)
T cd06561          82 YIDNWDLVDSLCANLLGKLLYA------EPELDLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHD  152 (197)
T ss_pred             CCchHHHHHHHHHHHHHHHHhc------CcchHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCC
Confidence            3466777666555443322211      11226777888888855555554444333322   23466788899999999


Q ss_pred             CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679          276 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  311 (337)
Q Consensus       276 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  311 (337)
                      +..-||.+...+|..++....     +.+.+.+.+.
T Consensus       153 ~~~~Vqkav~w~L~~~~~~~~-----~~v~~~l~~~  183 (197)
T cd06561         153 EEYFVQKAVGWALREYGKKDP-----ERVIAFLEKN  183 (197)
T ss_pred             HHHHHHHHHHHHHHHHHhhCH-----HHHHHHHHHH
Confidence            999999999999999988743     3444444443

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.43  E-value=21  Score=34.43  Aligned_cols=143  Identities=10%  Similarity=0.142  Sum_probs=99.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHh
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKEL   77 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l   77 (337)
                      +|..-.+++-.+..++..+|....  .-+|.+.+.+..     .++..-..+...++..+..+... .+....+|.+.+.
T Consensus       480 s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~  557 (982)
T KOG2022|consen  480 SLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQG  557 (982)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHH
Confidence            477778889999999999988652  337777776643     47888888999999888887665 3344566777776


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCC--ChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLP  150 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~llp  150 (337)
                      +..+..  -..+...+.++++.+..+.  ..+.++..+.+.+...  .+..|...++++|.+.+...++...+.++.
T Consensus       558 Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~  632 (982)
T KOG2022|consen  558 LHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMK  632 (982)
T ss_pred             hcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHH
Confidence            654433  3445555778887665433  2355566666666543  478999999999999999887665444433

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.42  E-value=18  Score=33.54  Aligned_cols=126  Identities=11%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-----------------------HHHH
Q 019679           13 NQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----------------------LAIQ   68 (337)
Q Consensus        13 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-----------------------~~~~   68 (337)
                      ..|+.++..+-.+.- -...+..+.+.+.+.++.+++.+...|..+...+-|.                       .+.+
T Consensus       192 ~kIA~l~s~llenPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~  271 (704)
T KOG2153|consen  192 EKIASLCSKLLENPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQ  271 (704)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHH
Confidence            345555555543321 1235667778888888989999888887776644221                       1111


Q ss_pred             h-------hhHhhHHhcCCCc---H---HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679           69 H-------ILPCVKELSSDSS---Q---HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  135 (337)
Q Consensus        69 ~-------ll~~l~~l~~d~~---~---~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  135 (337)
                      .       .+..+.++..+.+   +   ..-..|..++..+....+-....+.++..+..+++|....++..+++++..+
T Consensus       272 ~Ll~~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~l  351 (704)
T KOG2153|consen  272 ALLKQYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTL  351 (704)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            1       2222222333331   0   2334566666666655554456788889999999999999999999999887


Q ss_pred             Hhh
Q 019679          136 NQV  138 (337)
Q Consensus       136 ~~~  138 (337)
                      .+.
T Consensus       352 f~~  354 (704)
T KOG2153|consen  352 FEN  354 (704)
T ss_pred             hcC
Confidence            764

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=89.39  E-value=5.5  Score=27.65  Aligned_cols=72  Identities=17%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             HHHHHHHhhcCc----chHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          226 IVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       226 l~~~l~~~~~~~----~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      ++..+.+.+.|.    +...|..++.+++.+.+..|+.  .+.+++.-.+...+..  ++.|..+++++..+...++.+.
T Consensus        12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~   89 (107)
T smart00802       12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEE   89 (107)
T ss_pred             HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHH
Confidence            445555555554    3456788888888888755532  2455666667776764  5799999999999998888754

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.31  E-value=16  Score=32.74  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             hhHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHH--HhhHHHHHHhhccC--CChhHHHHHHHHHHHHhhhhcH
Q 019679          224 QHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       224 ~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      .+++|.+...++..  ....-...+-++|..+........  ...++|.+.++++.  .+.+..-..+..+-++..+-..
T Consensus       546 ~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t  625 (791)
T KOG1222|consen  546 ENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT  625 (791)
T ss_pred             ccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            45778777776531  122333344455555433322221  23467777766632  2234444455556666554222


Q ss_pred             HHH--H-HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          298 SVV--E-KSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       298 ~~~--~-~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ..+  . ...-.-|..+..|++.+||..+-.+|.-++.+
T Consensus       626 r~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  626 RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            211  1 12334455688999999999999999877754

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=89.18  E-value=0.64  Score=23.00  Aligned_cols=14  Identities=29%  Similarity=0.287  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHhcCc
Q 019679           85 VRSALATVIMGMAP   98 (337)
Q Consensus        85 vr~~a~~~l~~l~~   98 (337)
                      ||..++.+|+.+..
T Consensus         1 VR~~Aa~aLg~igd   14 (27)
T PF03130_consen    1 VRRAAARALGQIGD   14 (27)
T ss_dssp             HHHHHHHHHGGG-S
T ss_pred             CHHHHHHHHHHcCC
Confidence            57777777777775

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=88.76  E-value=6.2  Score=27.41  Aligned_cols=60  Identities=7%  Similarity=0.069  Sum_probs=32.5

Q ss_pred             CChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          120 EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       120 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      ....-|..++++++.+.+. +.+.+   .+.++..+...++.+  ..|..++++...+.+.++.+.
T Consensus        27 ~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHH
Confidence            3456677777777777773 32222   223333333333332  566666777766666666544

; GO: 0004674 protein serine/threonine kinase activity

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=88.47  E-value=17  Score=32.07  Aligned_cols=68  Identities=10%  Similarity=0.025  Sum_probs=46.9

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC------hHHHHhhHHHHHHh-hccCCChhHHHHHHHHHHHHh
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------SEITCSQLLPVVIN-ASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      +++..+..++.+.+.....++..+++.++..=.      ...+.++++..+.+ --.|.+-+++.+++.+|..++
T Consensus       315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence            477888888888888888888889998875422      22244455555554 234556677778888888885

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.43  E-value=8.1  Score=28.35  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      ..+++|..=...+..+..-.      ....+.+..+.+-+...++.+...|+..+..+++..|....    ...++..+.
T Consensus        18 ~~~~Dw~~~l~icD~i~~~~------~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~   91 (140)
T PF00790_consen   18 LPSPDWSLILEICDLINSSP------DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV   91 (140)
T ss_dssp             SSS--HHHHHHHHHHHHTST------THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHcCC------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence            34556655444454443321      12345666677777777788888888888777777664332    223555555


Q ss_pred             HHhcCCch--H--HHHHHHHHhhHhHhhhC
Q 019679          154 ELAEDRHW--R--VRLAIIEYIPLLASQLG  179 (337)
Q Consensus       154 ~~~~d~~~--~--vr~~~~~~l~~l~~~~~  179 (337)
                      .++.++..  .  ||.-+++.+......++
T Consensus        92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~  121 (140)
T PF00790_consen   92 KLIKSKKTDPETPVKEKILELLQEWAEAFK  121 (140)
T ss_dssp             HHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence            54433221  1  66666666666666653

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=88.41  E-value=10  Score=29.54  Aligned_cols=32  Identities=19%  Similarity=0.296  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  216 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  216 (337)
                      +.+++.+...+.|++..|+.+...+|..++..
T Consensus       140 ~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         140 DLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            33444444445555555555555555555544

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=88.03  E-value=16  Score=31.24  Aligned_cols=136  Identities=11%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhcCcccCh-hhHHhhhHHHHHH-hhcC---CChhHHHH-HHHhHHHhHhhhchh------hHHhhHHHH
Q 019679           84 HVRSALATVIMGMAPILGK-DATIEQLLPIFLS-LLKD---EFPDVRLN-IISKLDQVNQVIGID------LLSQSLLPA  151 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~-~l~d---~~~~vr~~-a~~~l~~l~~~~~~~------~~~~~llp~  151 (337)
                      .+|+..++.+........+ +...+.++|.+.. .+.|   +.|..|.. ++..+..+++.++..      .+.+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4677778888777765553 2234556666555 3433   44555543 444455555555431      223344444


Q ss_pred             HHHHhcC---CchHHHHHHHHHhhHhHhhhCh------hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679          152 IVELAED---RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  219 (337)
Q Consensus       152 l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  219 (337)
                      ..+++.+   ..|..|......+..+.+.+-.      ......++..+...+++++.+|-+.++..+..+.+.+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            4455533   4678999999999888877522      122345788888999999999999999999999887754

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=87.90  E-value=8.8  Score=28.16  Aligned_cols=72  Identities=15%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH----HHHHHHHHHccccc--hH--HHHHHHHHHHHHHHHh
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLKDKV--YS--IRDAAANNVKRLAEEF  217 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~d~~--~~--vr~~a~~~l~~~~~~~  217 (337)
                      ...+..+.+.+++.++.+...++..+..+++.+|...+.+    .++..+..++.+..  ..  ||+.+...+......|
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            3444555555566666666666666666666665543222    24444444443321  11  5666666666655555

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=87.78  E-value=21  Score=32.38  Aligned_cols=285  Identities=13%  Similarity=0.103  Sum_probs=153.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcC
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSS   79 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~   79 (337)
                      ..-..|..+++.+.......+.+. ..++.-....++..+ ..+.|.++.+.+..+.+.-..  ......+...+..-..
T Consensus         2 ~~l~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~   80 (464)
T PF11864_consen    2 QPLSERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSN   80 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCC
Confidence            445678888888888887776633 244555555555444 467999999999999887544  1222233333333344


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHH---HH------------------------HHHhH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR---LN------------------------IISKL  132 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr---~~------------------------a~~~l  132 (337)
                      +++-..|..++..|.+=++.+.  ....++.|.+...+......++   ..                        .+.-+
T Consensus        81 ~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l  158 (464)
T PF11864_consen   81 DDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFL  158 (464)
T ss_pred             chhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHH
Confidence            5555777888888876665442  1345666666665543221111   11                        11111


Q ss_pred             HHhHhhhc---hhhHHhhHHHHHHHHhcCCc-hHHHHHHHHHhhHhHhhh--ChhhHHHHHHHHHHHHccccchHHHHHH
Q 019679          133 DQVNQVIG---IDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAA  206 (337)
Q Consensus       133 ~~l~~~~~---~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a  206 (337)
                      ..+.+.-.   .+.....++..+..++...+ ...=..++..+..+..+.  +.+. ...++..+-....  .....+.+
T Consensus       159 ~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~--~~~l~~~~  235 (464)
T PF11864_consen  159 VNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVN--SVSLCKPS  235 (464)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhc--ccccchhH
Confidence            11111111   12223445555555543322 223356667777666532  3322 2334444333221  12555556


Q ss_pred             HHHHHHHHHHhChHHHHhhHHHHHHHhh--cC----cchHHHHHHHHHHHHhccccChH------HHHhhHHHHHHhhcc
Q 019679          207 ANNVKRLAEEFGPDWAMQHIVPQVLEMI--NN----PHYLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASK  274 (337)
Q Consensus       207 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~----~~~~vR~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~  274 (337)
                      -+.+..+++..-+    ...+..+++.+  .+    ++..+-..|+..++.+.-..|.+      .....++|.+...++
T Consensus       236 w~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~  311 (464)
T PF11864_consen  236 WRTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK  311 (464)
T ss_pred             HHHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh
Confidence            6666666643322    23445555565  22    33455568888888875444221      112248999999998


Q ss_pred             CCChhHHHHHHHHHHHHh-hhhcH
Q 019679          275 DRVPNIKFNVAKVLQSLI-PIVDQ  297 (337)
Q Consensus       275 d~~~~vr~~a~~~l~~i~-~~~~~  297 (337)
                      -.+..|=......+..+. +.++.
T Consensus       312 ~~~~~v~~eIl~~i~~ll~~~~~~  335 (464)
T PF11864_consen  312 SNSPRVDYEILLLINRLLDGKYGR  335 (464)
T ss_pred             CCCCeehHHHHHHHHHHHhHhhhh
Confidence            777777777777766666 44443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=87.69  E-value=0.82  Score=24.91  Aligned_cols=27  Identities=37%  Similarity=0.260  Sum_probs=14.0

Q ss_pred             hhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          304 IRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       304 i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      .+|.|..++...+++++..++.+|..+
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl   39 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNL   39 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            444444444444555555555555554

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=87.00  E-value=3.1  Score=27.54  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=9.5

Q ss_pred             CcHHHHHHHHHHHHhcCcccC
Q 019679           81 SSQHVRSALATVIMGMAPILG  101 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~  101 (337)
                      ++..||...++++..+....|
T Consensus        30 ~~~~vre~il~ci~qil~~~~   50 (86)
T PF09324_consen   30 PSIDVRELILECILQILQSRG   50 (86)
T ss_pred             CcHHHHHHHHHHHHHHHHHhH
Confidence            344444444444444444333

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=86.79  E-value=42  Score=34.82  Aligned_cols=68  Identities=16%  Similarity=0.117  Sum_probs=51.4

Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      ..+-.+++.|+..+..|..+++.+|-++.-....+   ....--.+.|.++...+...+-..++.||.++.
T Consensus       530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            46778888889988899899998888886544332   223457788889988888888778888887764

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=86.78  E-value=3.9  Score=36.78  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=75.2

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhc---cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLA---PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---  298 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---  298 (337)
                      .+...+.+.+.+|.-.+.-.+...+..+.   ..++..+....+++.+.+++..++...|.+....+.-+.-....+   
T Consensus       431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf  510 (743)
T COG5369         431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF  510 (743)
T ss_pred             chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence            46667777888877666655555555553   234566667789999999998888889988888888776554433   


Q ss_pred             -HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          299 -VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       299 -~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                       .....=...+..+.+|+++.|+..+.+.+.++.
T Consensus       511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft  544 (743)
T COG5369         511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT  544 (743)
T ss_pred             hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence             122233445567899999999999888887653

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=86.58  E-value=6.4  Score=33.88  Aligned_cols=74  Identities=5%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHH
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      ..+..|..-+++.+.+|-..|+..++++...||+.+.    ...+...+..++. ..++.|+......+..+++.+..+
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D  123 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD  123 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence            3555666666666677777777777777777765432    2234555555555 344667766666666666655544

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=86.48  E-value=31  Score=32.88  Aligned_cols=286  Identities=9%  Similarity=0.068  Sum_probs=158.2

Q ss_pred             hHHHHHHHHHhHHHHHHhhCHHHH-HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc-cChhhHHhhhHHHHH---Hh-
Q 019679           43 EAEVRIAAAGKVTKICRILNPELA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LGKDATIEQLLPIFL---SL-  116 (337)
Q Consensus        43 ~~~vR~~a~~~l~~~~~~~~~~~~-~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~---~~-  116 (337)
                      ++.+-..++++++.+.+.++-..+ .+..++.+.++++  ...+|.+|+.++-.+... ..+... -.++..+.   ++ 
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dK-L~lln~L~q~l~lf  282 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDK-LALLNMLNQTLELF  282 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHH
Confidence            788999999999999988776632 3557777777776  667999999999887642 222211 12223321   11 


Q ss_pred             ---hcC--CChhHHHHHHHhHHHhHhhh--------ch------hh---HHhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679          117 ---LKD--EFPDVRLNIISKLDQVNQVI--------GI------DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  174 (337)
Q Consensus       117 ---l~d--~~~~vr~~a~~~l~~l~~~~--------~~------~~---~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  174 (337)
                         -.|  .++++-....+-+...+..+        +.      +.   ..-.++|.+.+.+.+.....-...+..+..+
T Consensus       283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy  362 (980)
T KOG2021|consen  283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY  362 (980)
T ss_pred             hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence               123  34455444433333322111        00      00   1123677777777776666666666555554


Q ss_pred             HhhhChh--------hHHHHHHHHHH-HHc------ccc----------chHHHHHHHHHHHHHHHHhChHHHHhhHHHH
Q 019679          175 ASQLGVG--------FFDDKLGALCM-QWL------KDK----------VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  229 (337)
Q Consensus       175 ~~~~~~~--------~~~~~l~~~l~-~~l------~d~----------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  229 (337)
                      ...+.+.        ...++++.... +..      .|.          ..++|+..-..+..+. ..+++.....+-..
T Consensus       363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s  441 (980)
T KOG2021|consen  363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS  441 (980)
T ss_pred             HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence            4433211        12222332222 222      111          2367777544444443 34565443333333


Q ss_pred             HHHhh---cCcchHHHHHHHHHHHHhccccChHH------------HHhhHHHHHHh--hccCCChhHHHHHHHHHHHHh
Q 019679          230 VLEMI---NNPHYLYRMTILQAISLLAPVMGSEI------------TCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       230 l~~~~---~~~~~~vR~~~~~~l~~l~~~~~~~~------------~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      +...+   +..+|..-+.|+..+=.+++....+.            ....+++.+..  .+..+++.|..--...+.+..
T Consensus       442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~  521 (980)
T KOG2021|consen  442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN  521 (980)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence            33333   34679999999988888887654321            12234444433  346777888887777777766


Q ss_pred             hhhcHHHHHHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhhh
Q 019679          293 PIVDQSVVEKSIRPCLVELSED------PDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       293 ~~~~~~~~~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +.+..+   ..-+|.+...+-|      ++.+||..|.+.+..+.+.++
T Consensus       522 kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk  567 (980)
T KOG2021|consen  522 KFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK  567 (980)
T ss_pred             HHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence            655433   2344555443332      567899998888777665543

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=86.44  E-value=1.3  Score=24.04  Aligned_cols=28  Identities=21%  Similarity=0.202  Sum_probs=16.2

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      .+|.+.+++..+++.++..++.+|..++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            4555555555555666666666665553

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=86.21  E-value=24  Score=31.45  Aligned_cols=302  Identities=15%  Similarity=0.109  Sum_probs=155.2

Q ss_pred             cchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHH-------hhhHhhHHhcCCCcHHHHHHHHHHHHhcCc
Q 019679           29 SDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQ-------HILPCVKELSSDSSQHVRSALATVIMGMAP   98 (337)
Q Consensus        29 ~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~-------~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~   98 (337)
                      +.....+..++.. ..+++.+..+..+..+....+.-  .+.+       ..-|++ .+++.+++.+...++..+..+..
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence            3455566666644 56778888888888777764331  1111       122333 36677888999999999988864


Q ss_pred             ccCh---hhHHhhhHHHHHHhhcCC-ChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCC--chHHHHHHHHH
Q 019679           99 ILGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR--HWRVRLAIIEY  170 (337)
Q Consensus        99 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~--~~~vr~~~~~~  170 (337)
                      .-..   ......+.+.+...+... +......++.++..+...-...  .+....++.+...++..  ..+....++-+
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            3221   112233455555666543 3566777778887776543322  12223445555544332  34555555555


Q ss_pred             hhHhHhhhC-hh-hHHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHhC----hH----HHHhhHHHHHHHhhcCcch
Q 019679          171 IPLLASQLG-VG-FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFG----PD----WAMQHIVPQVLEMINNPHY  239 (337)
Q Consensus       171 l~~l~~~~~-~~-~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~----~~----~~~~~l~~~l~~~~~~~~~  239 (337)
                      +..++-... .+ .....++|.+.+.+++... .|-..++.++..+...-.    ..    .+...=++.+++.++.+.|
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            555542211 11 1123577777777776432 333344445555544210    00    0111112333344433322


Q ss_pred             H----------HHHHHHHHHHHhc-----------------cccChHHHH-----------hhHHHHHHhhcc-CCChhH
Q 019679          240 L----------YRMTILQAISLLA-----------------PVMGSEITC-----------SQLLPVVINASK-DRVPNI  280 (337)
Q Consensus       240 ~----------vR~~~~~~l~~l~-----------------~~~~~~~~~-----------~~l~~~l~~~l~-d~~~~v  280 (337)
                      .          ++...-..+..+.                 .....+.|.           -.++..+.+++. ..++.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            1          1111111111111                 111111121           134556666663 334556


Q ss_pred             HHHHHHHHHHHhhhhcHH-HHHH--hhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          281 KFNVAKVLQSLIPIVDQS-VVEK--SIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       281 r~~a~~~l~~i~~~~~~~-~~~~--~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      -.-|+.=+|.++.+++.. ...+  .....+-++.++++++||..|..|++.+.
T Consensus       371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            666777788888887422 2212  24444556788899999999999999874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=85.86  E-value=6.1  Score=25.21  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhccc-cChHHHHh-hHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhc
Q 019679          242 RMTILQAISLLAPV-MGSEITCS-QLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       242 R~~~~~~l~~l~~~-~~~~~~~~-~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      +.+++.+++.++.. .|-....+ .+++.+.++. ..+...+|-.+..+|+.++....
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~   61 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE   61 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence            45678888887654 34443332 5777777765 46678888888888888876543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=85.55  E-value=24  Score=30.90  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             hHHHHHHhhccCCC-hhHHHHHHHHHHHHhhhhcHH-HHHH--hhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          264 QLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS-VVEK--SIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       264 ~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~-~~~~--~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      .++..+.++|...+ |.+-.-|+.=++.+..+++.- ...+  .-...+-++++-+|++||+.|..|+..+...
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            46777777775555 555556777788887776532 1111  2334455778889999999999999887643

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=85.37  E-value=7.1  Score=25.84  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=42.9

Q ss_pred             HhhHHHHHHhh-ccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679          262 CSQLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQ  328 (337)
Q Consensus       262 ~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~  328 (337)
                      ...++.-+... ...++.+||.-.++++.++....|..  .-...++..+....+|.+.++-..|.+.+.
T Consensus        15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            33433333333 45566788888888888887766654  223567777777777777777777766654

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.62  E-value=12  Score=26.65  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=15.9

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          186 KLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      +++..+.+-|++.++.|+.-+++.|..++.
T Consensus        38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~   67 (122)
T cd03572          38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCE   67 (122)
T ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence            455555555555555555555555555544

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=83.95  E-value=12  Score=26.19  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      +.++..+.+.+++++|.+..-++..+..+++.+|...
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            3455555666666677777777777777777666543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=83.73  E-value=33  Score=30.96  Aligned_cols=90  Identities=14%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHH--hhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCccc----Chh
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICR--ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKD  103 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~--~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----~~~  103 (337)
                      ++-..+.....--.++.|...+.+|.-+-.  .+.++.    ++.++..++.-.+-..|..+...+......+    ..+
T Consensus        20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~~----LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~   95 (616)
T KOG2229|consen   20 ELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAED----LLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKND   95 (616)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHHH----HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccc
Confidence            444444444445568899999888876643  234443    4444444544444456777766555544322    122


Q ss_pred             hHHhhhHHHHHHhhcCCChh
Q 019679          104 ATIEQLLPIFLSLLKDEFPD  123 (337)
Q Consensus       104 ~~~~~l~~~l~~~l~d~~~~  123 (337)
                      .....+-.++..++.++++.
T Consensus        96 klnkslq~~~fsml~~~d~~  115 (616)
T KOG2229|consen   96 KLNKSLQAFMFSMLDQSDST  115 (616)
T ss_pred             hHHHHHHHHHHHHHhCCCch
Confidence            23345666788888888775

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=83.62  E-value=15  Score=26.93  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI  152 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l  152 (337)
                      ...+++|..=...|..+..= . -|    ....+..+.+-++..++.|...|+..+..+++..|....    ...++..+
T Consensus        13 ~l~~~dw~~ileicD~In~~-~-~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el   86 (139)
T cd03567          13 SNREEDWEAIQAFCEQINKE-P-EG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL   86 (139)
T ss_pred             cCCCCCHHHHHHHHHHHHcC-C-cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence            34567888777777777532 1 12    245667778888888999999999999999998886432    34456666


Q ss_pred             HHHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679          153 VELAED------RHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       153 ~~~~~d------~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      .+++..      .+..||.-+++.+...+..++.
T Consensus        87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (139)
T cd03567          87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH  120 (139)
T ss_pred             HHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            666642      4678888888888888877653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=83.60  E-value=15  Score=26.75  Aligned_cols=96  Identities=19%  Similarity=0.232  Sum_probs=61.9

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      ..+++|..=...|..+..= .     ......+..+.+-+...++.+...|+..+..+++..|....    ...++..+.
T Consensus        13 l~~~dw~~~l~icD~i~~~-~-----~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~   86 (133)
T smart00288       13 LLEEDWELILEICDLINST-P-----DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV   86 (133)
T ss_pred             CCCcCHHHHHHHHHHHhCC-C-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence            3456776666666555332 1     12345667777788888899999999999988888775432    234566666


Q ss_pred             HHhcCCch--HHHHHHHHHhhHhHhhhC
Q 019679          154 ELAEDRHW--RVRLAIIEYIPLLASQLG  179 (337)
Q Consensus       154 ~~~~d~~~--~vr~~~~~~l~~l~~~~~  179 (337)
                      .++.++..  .||.-+++.+...+..+.
T Consensus        87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       87 KLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            66654332  377777777777776664

Unpublished observations. Domain of unknown function.

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.18  E-value=26  Score=31.58  Aligned_cols=98  Identities=15%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----HHhhHHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAI  152 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~llp~l  152 (337)
                      .+.+++|..-...|..+..--..      ..+.+..+.+.+++.++.|...|+..|..+++.+|...    ..+.+++.+
T Consensus        13 ~l~~pDWa~NleIcD~IN~~~~~------~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~em   86 (470)
T KOG1087|consen   13 SLAEPDWALNLEICDLINSTEGG------PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEM   86 (470)
T ss_pred             cccCccHHHHHHHHHHHhcCccC------cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            56678998888888777543321      13677888899999999999999999999999888543    345677777


Q ss_pred             HHHhcC--CchHHHHHHHHHhhHhHhhhCh
Q 019679          153 VELAED--RHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       153 ~~~~~d--~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      ....+.  .+..||.-++..|..+.+.++.
T Consensus        87 Vk~~k~~~~~~~Vr~kiL~LI~~W~~af~~  116 (470)
T KOG1087|consen   87 VKRPKNKPRDLKVREKILELIDTWQQAFCG  116 (470)
T ss_pred             HhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence            766654  4668999999999999888865

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=82.83  E-value=45  Score=31.86  Aligned_cols=69  Identities=16%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679           67 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        67 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  137 (337)
                      ...++..|..+..|+=+.|+.-++..+..+...-+++  ...++..+.+-+.|++..+-..|...|..+..
T Consensus       302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~  370 (988)
T KOG2038|consen  302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA  370 (988)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence            3456778888999999999999999999887655543  35788888999999888777777777666543

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.75  E-value=65  Score=33.57  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCCCCccHH
Q 019679          243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSEDPDVDVR  320 (337)
Q Consensus       243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~vr  320 (337)
                      ...+.++.+.+..-+.+ +. .+..-++....+.+...|..|+..+..+.+.+|..+  ...+.+|.|.++.+|.+.+|-
T Consensus      1522 ~~li~~i~~~~~a~~~d-~~-pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve 1599 (1621)
T KOG1837|consen 1522 KLLIAEIASDSVADKDD-LK-PLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVE 1599 (1621)
T ss_pred             HHHHHHHHhhccCChhh-hH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHH
Confidence            33444455544333322 22 222333344467778999999999999999999874  467899999999999999999


Q ss_pred             HHHHHHHHHHHHhhhC
Q 019679          321 FFATQALQSKDQVMMS  336 (337)
Q Consensus       321 ~~a~~al~~l~~~~~~  336 (337)
                      ..+.+.+..+-..+|+
T Consensus      1600 ~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1600 CLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred             HHHHHHHHHHHHHhch
Confidence            9999999988888875

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=82.52  E-value=47  Score=31.78  Aligned_cols=109  Identities=6%  Similarity=0.005  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  262 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  262 (337)
                      ++.+++.++..+-.|+-..|+..+++++..+...-..+  ...++..+++.+.|++..+-..|-..|..|......  ..
T Consensus       301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn--MK  376 (988)
T KOG2038|consen  301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN--MK  376 (988)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc--ce
Confidence            35668888888889999999999999999888754333  457888999999999887776676666666433321  11


Q ss_pred             hhHHHHHHhhccCCChh--HHHHHHHHHHHHhhhh
Q 019679          263 SQLLPVVINASKDRVPN--IKFNVAKVLQSLIPIV  295 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~--vr~~a~~~l~~i~~~~  295 (337)
                      ..++.-+..++-.++..  -...|+..|.++.-..
T Consensus       377 ~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lsh  411 (988)
T KOG2038|consen  377 IVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSH  411 (988)
T ss_pred             eehHHHHHHHHcccCccccceeehhhhhhhhHhcc
Confidence            22344444444444433  3335566666665433

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.51  E-value=15  Score=26.17  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=18.3

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                      .++..+..-+++.+.+|+..++..|..++....
T Consensus        38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572          38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            455555555555555565556666655554433

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=82.23  E-value=23  Score=28.06  Aligned_cols=26  Identities=19%  Similarity=0.149  Sum_probs=12.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHH
Q 019679           33 PAYVRLLRDNEAEVRIAAAGKVTKIC   58 (337)
Q Consensus        33 ~~l~~~~~d~~~~vR~~a~~~l~~~~   58 (337)
                      .....+.+++..+.|..++..+...-
T Consensus        49 ~l~~~Lw~~~~~E~r~~al~~l~~~~   74 (208)
T cd07064          49 ELVLELWQQPEREYQYVAIDLLRKYK   74 (208)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHHHH
Confidence            33344445555555555555544433

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length

Probab=81.71  E-value=17  Score=28.40  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=13.6

Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLA  214 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~  214 (337)
                      ++..+++...+.-..||..|..++..+.
T Consensus         8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll   35 (193)
T PF12612_consen    8 IIGGLLRQAAEKIDRVREVAGKCLQRLL   35 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333334344444455555555555554

There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=81.65  E-value=5  Score=36.17  Aligned_cols=107  Identities=10%  Similarity=0.120  Sum_probs=79.5

Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHHHh---ChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---
Q 019679          186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---  259 (337)
Q Consensus       186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---  259 (337)
                      .+.+.+...|++++..|...+...+..+.-.+   |.......++..+.+++...+...|....+.+..+.-.+.+.   
T Consensus       431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf  510 (743)
T COG5369         431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF  510 (743)
T ss_pred             chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence            46777788888887777777666665554333   334456678888888888777888888888888887666543   


Q ss_pred             -HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          260 -ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       260 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                       +....=+.-++.+.+|+.+.|+....+.|..+.
T Consensus       511 ~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft  544 (743)
T COG5369         511 KFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT  544 (743)
T ss_pred             hhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence             222334667888999999999999999999885

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=81.55  E-value=49  Score=31.34  Aligned_cols=68  Identities=21%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             HHHHhhHHHHHHhhccCC----ChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          259 EITCSQLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       259 ~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      +.|.++++..+.+++.|.    ...+|..|.+.+..+...   +  ..-..+-+..+..|+.+.+|..+.+|.+.+.
T Consensus       686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k---D--~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK---D--SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc---c--ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            457788888888887554    467888888887775321   1  0123345567888999999999999887654

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=81.46  E-value=19  Score=26.51  Aligned_cols=60  Identities=15%  Similarity=0.080  Sum_probs=29.7

Q ss_pred             CChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHH-HHhhhCC---CCccHHHHHHHHHHHHHHhhh
Q 019679          276 RVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPC-LVELSED---PDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       276 ~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~-l~~l~~d---~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +++.|...|...|..+.+.+|....    ...++.. |.++..+   ....|+..+.+.+...+..|+
T Consensus        51 ~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~  118 (141)
T cd03565          51 KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR  118 (141)
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence            4455555556666666655554322    1233333 4444332   223556666666666655554

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=81.07  E-value=18  Score=26.59  Aligned_cols=48  Identities=21%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  159 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~  159 (337)
                      +.+...+..++.+.+++|+..|++++-..-..    .+ ...-..+..+++|.
T Consensus        16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~----~l-~pY~d~L~~Lldd~   63 (141)
T PF07539_consen   16 DELYDALLRLLSSRDPEVQKLALDCLLTWKDP----YL-TPYKDNLENLLDDK   63 (141)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHcCcc
Confidence            56778888999999999999999998776331    11 22234455566664

It is believed to be involved in processing of non-coding RNA [].

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=80.98  E-value=20  Score=26.41  Aligned_cols=97  Identities=13%  Similarity=0.221  Sum_probs=53.8

Q ss_pred             cCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHH----HhhHHHH-H
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQ-V  230 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~-l  230 (337)
                      ..++|..-...+..+..  ...|+    ...+..+.+.+. ..++.|...|+..+..+.+..|...+    ...++.. +
T Consensus        15 ~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L   88 (141)
T cd03565          15 QSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVL   88 (141)
T ss_pred             CCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHH
Confidence            34556555544444432  11222    234555555555 45677777778888888877775433    2344443 5


Q ss_pred             HHhhcC---cchHHHHHHHHHHHHhccccChH
Q 019679          231 LEMINN---PHYLYRMTILQAISLLAPVMGSE  259 (337)
Q Consensus       231 ~~~~~~---~~~~vR~~~~~~l~~l~~~~~~~  259 (337)
                      ..++..   .+..|+...+..+..++..+..+
T Consensus        89 ~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          89 VKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            555542   23466777777777776665443

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG3961 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.40  E-value=9  Score=30.10  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc---ccCh
Q 019679          184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGS  258 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~---~~~~  258 (337)
                      +..++|.++..|.+....-|.-|-..+..+.-..|.+.  +..+++..+...+...+.++.+.++..+..+.-   ..|.
T Consensus       112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~  191 (262)
T KOG3961|consen  112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA  191 (262)
T ss_pred             chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence            34588999999988888778888888888877666432  256777788888888888898888888888753   3443


Q ss_pred             H--HHHhhHHHHHHh
Q 019679          259 E--ITCSQLLPVVIN  271 (337)
Q Consensus       259 ~--~~~~~l~~~l~~  271 (337)
                      .  +|...++|.+..
T Consensus       192 aLVPfYRQlLp~~n~  206 (262)
T KOG3961|consen  192 ALVPFYRQLLPVLNT  206 (262)
T ss_pred             hhhhHHHHhhhhhhh
Confidence            2  345566666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-112
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		3e-06
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-112
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		3e-06
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		1e-112
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		3e-06
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		1e-112
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		3e-06
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-112
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		4e-06
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-112
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		4e-06
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-107
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		2e-06
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		8e-64

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 96  MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 153
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 154 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 213
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +++ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 214 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 273
           + E  P     H VP V  +     +  R +     S+  P + S +  ++L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 274 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
            D  P ++   A  L     +++   V+  I P    L+ D    VR  A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 553 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 254 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 314 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 373
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 374 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 433
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 434 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 493
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 494 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 553
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 554 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 8/233 (3%)
Query: 96  MAPILGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 153
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 154 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 213
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +++ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 214 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 273
           + E  P     H VP V  +     +  R +     S+  P + S +  ++L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 274 KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
            D  P ++   A  L     +++   V+  I P    L+ D    VR  A +A
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 227

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 313 SADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 553 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 226

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 247 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 306
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 307 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 366
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 367 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 426
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 427 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 486
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 487 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 546
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 183
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 184 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 220

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 257/330 (77%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 245 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 304
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 305 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 364
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 365 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 424
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 425 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 484
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 485 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 544
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 545 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 4   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 62
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 63  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 122
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 123 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 181
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 182 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEA 218

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/330 (57%), Positives = 248/330 (75%), Gaps = 4/330 (1%)
Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRY VA++  EL +AVGPE T++D+VPA+  L +D EAEVR AA+ KV + C  L
Sbjct: 247 DKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENL 306
Query: 62  NPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +    +    ILPC+KEL SD++QHV+SALA+VI G++PILGKD TIE LLP+FL+ L
Sbjct: 307 SADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQL 366
Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY PLLA Q
Sbjct: 367 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQ 426
Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LC  WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL    +P
Sbjct: 427 LGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDP 486
Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+R T L  I++L+ V G +IT    LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 487 NYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDN 546
Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 STLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 2/217 (0%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
            +    + +G   +   L          +   +RD A  +++ ++ E  P     H VP 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           V  +     +  R +     S+  P + S +  ++L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQA 326
               +++   V+  I P    L+ D    VR  A +A
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEA 220

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  240 bits (613), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 160/218 (73%)
Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 169
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 170 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 229
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 289
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 290 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
            + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-110
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-53
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-41
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-38
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-37
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-07
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-19
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	7e-15
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-18
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	2e-09
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-07
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	8e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	7e-08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	8e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	9e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	1e-05
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	3e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-04
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	8e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  331 bits (850), Expect = e-110
 Identities = 195/332 (58%), Positives = 256/332 (77%), Gaps = 4/332 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  L
Sbjct: 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312

Query: 62  NPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
           + +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ L
Sbjct: 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQL 372

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           KDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA Q
Sbjct: 373 KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ 432

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 237
           LGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +P
Sbjct: 433 LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D 
Sbjct: 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
           S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  182 bits (464), Expect = 4e-53
 Identities = 77/332 (23%), Positives = 142/332 (42%), Gaps = 5/332 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
            +   VR      L  +     P    +  VP   RL   +    R +A G  +     +
Sbjct: 98  VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV 157

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           +  +    +    + L SD +  VR A A+ +   A +L  D    +++P+F +L  DE 
Sbjct: 158 SSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ 216

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             VRL  +     + Q++  + L   ++P + + AED+ WRVR  + +    L   +G  
Sbjct: 217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNP 237
                L       +KD    +R AA++ VK   E    D      M  I+P + E++++ 
Sbjct: 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA 336

Query: 238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
           +   +  +   I  L+P++G + T   LLP+ +   KD  P ++ N+   L  +  ++  
Sbjct: 337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
             + +S+ P +VEL+ED    VR    + +  
Sbjct: 397 RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  160 bits (407), Expect = 6e-45
 Identities = 60/331 (18%), Positives = 129/331 (38%), Gaps = 4/331 (1%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
               W      A  L+ +C        ++++   +  L  D+   VR AAA K+ +  ++
Sbjct: 135 AGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
           L  +     I+P    L+SD    VR       + +A +L ++     ++P      +D+
Sbjct: 195 LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK 254

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
              VR  +  K  ++ + +G ++    L+PA   L +D    VR A    +      L  
Sbjct: 255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314

Query: 181 ----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
                    ++     + + D    ++ A A+ +  L+   G D  ++H++P  L  + +
Sbjct: 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 374

Query: 237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296
                R+ I+  +  +  V+G       LLP ++  ++D    ++  + + +  L   + 
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434

Query: 297 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
               ++ +    +    D    +R  AT  L
Sbjct: 435 VEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  150 bits (380), Expect = 3e-41
 Identities = 45/253 (17%), Positives = 113/253 (44%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
            D +  V+  +A+ +  L   +G + T   ++P ++  L+D   EVR+     +  +  +
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
           +      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L  + ++ L D 
Sbjct: 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
              +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  I +L+   G 
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513

Query: 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240
                 +    ++   D V ++R   A +++++            + P + ++  +    
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD 573

Query: 241 YRMTILQAISLLA 253
            +    +A+++L+
Sbjct: 574 VKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  142 bits (360), Expect = 2e-38
 Identities = 55/323 (17%), Positives = 117/323 (36%), Gaps = 6/323 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           ++  ++R     +L  +  A+G E TRS+++P     + D + EV +A A ++     ++
Sbjct: 21  NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 79

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
                +  +LP ++ L++     VR      +  ++            +P+   L   ++
Sbjct: 80  GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 139

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
              R +                +   L      L  D    VR A    +   A  L + 
Sbjct: 140 FTSRTSACGLFSVCYP-RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 198

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
               ++  +      D+  S+R  A      +A+    +     ++P + +   +  +  
Sbjct: 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRV 258

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           R  +    + L   +G EIT + L+P   N  KD    ++   +  ++     +     E
Sbjct: 259 RYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318

Query: 302 K----SIRPCLVELSEDPDVDVR 320
                 I PC+ EL  D +  V+
Sbjct: 319 NVIMSQILPCIKELVSDANQHVK 341

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  138 bits (350), Expect = 6e-37
 Identities = 56/298 (18%), Positives = 116/298 (38%), Gaps = 2/298 (0%)

Query: 30  DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSAL 89
             +   +  LR+ + ++R+ +  K++ I   L  E     +LP + +   D    V  AL
Sbjct: 10  YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLAL 68

Query: 90  ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 149
           A  +     ++G    +  LLP   SL   E   VR   +  L  ++       L    +
Sbjct: 69  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128

Query: 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 209
           P +  LA    +  R +      +   ++       +L         D    +R AAA+ 
Sbjct: 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 210 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 269
           +   A+    D     I+P    + ++     R+  ++A   +A ++  E   + ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
             A++D+   +++ VA     L   V   + +  + P    L +D + +VR  A+  +
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 286
           +  +++ + N     R+  ++ +S +A  +G E T S+LLP + +   D    +   +A+
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAE 70

Query: 287 VLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
            L +   +V        + P L  L+   +  VR  A ++L++
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRA 113

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 83.9 bits (207), Expect = 5e-19
 Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 141 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLKD 197
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     KD
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 198 KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 255
               +   A   +  LA+     ++      VP +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 256 MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVEL 311
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 312 SEDPDVDVRFFATQAL 327
             +PD  VR  + +AL
Sbjct: 185 LNEPDPTVRDSSAEAL 200

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 72.0 bits (176), Expect = 7e-15
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 13/198 (6%)

Query: 2   DKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKIC 58
           +K W +R      L +L              +V A  +++ +D+   +   A   +  + 
Sbjct: 26  EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLA 85

Query: 59  RILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 116
           + L    +      +P + E   +   +V +AL   I  +        ++E      +  
Sbjct: 86  KGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY----ASTSLEAQQESIVES 141

Query: 117 LKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 172
           L ++ P V+      I++ L +         L + L  ++V+   +    VR +  E + 
Sbjct: 142 LSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201

Query: 173 LLASQLGVGFFDDKLGAL 190
            L   +G       L  +
Sbjct: 202 TLIKLMGDKAVTPLLADV 219

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 82.6 bits (204), Expect = 1e-18
 Identities = 43/217 (19%), Positives = 71/217 (32%), Gaps = 70/217 (32%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           D    VR  VA +L         E            L+ D + EVRI  A ++       
Sbjct: 85  DSDEVVRRAVAYRL-------PRE--------QLSALMFDEDREVRITVADRLP------ 123

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVI-MGMAPILGKD-------ATIEQL-LPI 112
                    L  ++++++D    VR+ +   I  G      +D          ++L    
Sbjct: 124 ---------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEES 174

Query: 113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 172
              + +D  P+VR  + S+L                   ++EL  D  W VRLA +E+  
Sbjct: 175 LGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVEHAS 219

Query: 173 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 209
           L A +                 L +    +R A A  
Sbjct: 220 LEALRE----------------LDEPDPEVRLAIAGR 240

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 27/141 (19%), Positives = 41/141 (29%), Gaps = 40/141 (28%)

Query: 2   DKSWRVRYMVA-----NQLYELC----EAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 52
           D+ + VR  V       +L+         V     +     +   + +D E EVR   A 
Sbjct: 133 DRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS 192

Query: 53  KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 112
           ++                   + EL  D    VR A                  E     
Sbjct: 193 RLRG---------------DDLLELLHDPDWTVRLAAV----------------EHASLE 221

Query: 113 FLSLLKDEFPDVRLNIISKLD 133
            L  L +  P+VRL I  +L 
Sbjct: 222 ALRELDEPDPEVRLAIAGRLG 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 34/275 (12%), Positives = 69/275 (25%), Gaps = 93/275 (33%)

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NP LA         +  +D     R+              + + +E L P    L++D  
Sbjct: 51  NPHLA--------VQYLADPFWERRAIAV-----------RYSPVEALTP----LIRDSD 87

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             VR  +  +L +                 +  L  D    VR+ + + +P         
Sbjct: 88  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLP--------- 123

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANN-----VKRLAEEFGPD---WAMQHIVPQVLE- 232
                      Q   D+ Y +R           + R   +          + +  + L  
Sbjct: 124 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGL 177

Query: 233 MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292
           M  +P    R  +   +                   ++    D    ++    +      
Sbjct: 178 MTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVE------ 216

Query: 293 PIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
                           +   ++PD +VR      L
Sbjct: 217 ----------HASLEALRELDEPDPEVRLAIAGRL 241

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 39/256 (15%), Positives = 100/256 (39%), Gaps = 11/256 (4%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           ++ + +R  +AN    L + +        V+   + LL D+   V   A   +  I +  
Sbjct: 5   EEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK-T 62

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +   
Sbjct: 63  REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIGD 120

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
              ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +       
Sbjct: 121 EKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK 177

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
           + +  L  + +  L D    +R +A   +  LA     +  ++ +V + LE +N+   L 
Sbjct: 178 YVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSLV 233

Query: 242 RMTILQAISLLAPVMG 257
             T+ + IS L  + G
Sbjct: 234 NKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 33/211 (15%), Positives = 84/211 (39%), Gaps = 8/211 (3%)

Query: 117 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 177 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
                 ++  L  L     K +   +    A    ++A+E      ++ ++P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176

Query: 297 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 327
           + V      P ++ L  D D  VR  A +AL
Sbjct: 177 KYV--NPFLPRIINLLHDGDEIVRASAVEAL 205

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 52/306 (16%), Positives = 103/306 (33%), Gaps = 47/306 (15%)

Query: 25  EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 84
              +        RLL D+ +  RI++A    ++ ++   + A++  +        D +  
Sbjct: 18  NQCKKLNDDELFRLLDDHNSLKRISSA----RVLQLRGGQDAVRLAIEFCS----DKNYI 69

Query: 85  VRSALATVIMGMAPILGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL 143
            R         +  I       + +  I  +  L D+   VR   I    Q  +   I  
Sbjct: 70  RRDI---GAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY- 125

Query: 144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 203
            S  ++      A D+   VR A    I    S +     D     L +  LKD    +R
Sbjct: 126 -SPKIVEQSQITAFDKSTNVRRATAFAI----SVIN----DKATIPLLINLLKDPNGDVR 176

Query: 204 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 263
           + AA     + +    D     I    +EM+ + +   R+  +  +        S     
Sbjct: 177 NWAA-FAININKYDNSD-----IRDCFVEMLQDKNEEVRIEAIIGL--------SYRKDK 222

Query: 264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFF 322
           ++L V+ +  K     +  ++ +    L         +K++ P L   L +  D ++   
Sbjct: 223 RVLSVLCDELKK--NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITS 272

Query: 323 ATQALQ 328
           A   L+
Sbjct: 273 AIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 35/252 (13%), Positives = 75/252 (29%), Gaps = 36/252 (14%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           D +   R   A  L       G +    D V   +    D     R   A  + +I    
Sbjct: 34  DHNSLKRISSARVLQLR----GGQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICK 85

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             E  + +IL       +D S  VR+                    +++        D+ 
Sbjct: 86  KCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCKK--NPIYSPKIVEQSQITAFDKS 141

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
            +VR      +          +  ++ +P ++ L +D +  VR      I +        
Sbjct: 142 TNVRRATAFAISV--------INDKATIPLLINLLKDPNGDVRNWAAFAININKYD---- 189

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
             +  +    ++ L+DK   +R  A   +    ++         ++  + + +       
Sbjct: 190 --NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK--------RVLSVLCDELKKNT--V 237

Query: 242 RMTILQAISLLA 253
              I++A   L 
Sbjct: 238 YDDIIEAAGELG 249

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 31/206 (15%), Positives = 74/206 (35%), Gaps = 26/206 (12%)

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
              +     +          +   +     +  L +D +   R++    +       G  
Sbjct: 4   TYQKRKASKEYGL------YNQCKKLNDDELFRLLDDHNSLKRISSARVL----QLRG-- 51

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
                   L +++  DK Y  RD  A  + ++      +  + +I+  +    N+     
Sbjct: 52  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMAL--NDKSACV 107

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE 301
           R T +++ +       + I   +++      + D+  N++   A  +     I D++ + 
Sbjct: 108 RATAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV---INDKATI- 161

Query: 302 KSIRPCLVELSEDPDVDVRFFATQAL 327
               P L+ L +DP+ DVR +A  A+
Sbjct: 162 ----PLLINLLKDPNGDVRNWAAFAI 183

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 104 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220
             V+   ++ +  L S++     +  +  LC   +      +RD ++  +K +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 221 WAMQHIVPQVLEMI---------NNPHYLYRMTILQAISLLAPVMGSEITCS--QLLPVV 269
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
           +         ++      L  L+      V    I   L ELS++  +       Q + +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 59.0 bits (141), Expect = 9e-10
 Identities = 49/349 (14%), Positives = 115/349 (32%), Gaps = 26/349 (7%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
            DK+  V+ +    L  L   V  E     +V      +  ++ ++R  ++  +  +   
Sbjct: 58  EDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE 116

Query: 61  LNPE--------LAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPILGKDATIE 107
           L P            + I   +    +              +A ++     +L       
Sbjct: 117 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HP 174

Query: 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 167
            +L   L  L      VR   I  L  +    G  +    +   + EL+++         
Sbjct: 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTY 234

Query: 168 IEYIPLLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--M 223
           I+ I  ++ Q G    +  +K+  L +++       +R+      +        +    +
Sbjct: 235 IQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV 294

Query: 224 QHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKF 282
             I+   L+ +  +P+Y Y        ++ A     +    Q      +   D    ++ 
Sbjct: 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD---DQGSDDEYSDDDDMSWKVRR 351

Query: 283 NVAKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 329
             AK L +++    + + E  K++ P L+   ++ + +V+     A  S
Sbjct: 352 AAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 400

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 1    MDKSWRVRYMVANQLYEL---CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 57
            +    + +Y++ + L E+      VG +P   ++    ++     E   R   A  + K+
Sbjct: 899  ITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 958

Query: 58   CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
              I +PE  +  +   +   SS +   V +A+   I      +  D  ++  +  FL  L
Sbjct: 959  TLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI--DPLLKNCIGDFLKTL 1015

Query: 118  KDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVR 164
            +D   +VR   +   +         +     ++LP +    + R   +R
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIR 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 47/326 (14%), Positives = 92/326 (28%), Gaps = 38/326 (11%)

Query: 2   DKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 59
           + S          +  +    G         ++P  V+    ++ E+R           R
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284

Query: 60  ILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 116
               E+       I  C+K L+ D + +            A     D   +Q      S 
Sbjct: 285 RCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDD---DQGSDDEYSD 341

Query: 117 LKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174
             D    VR      LD V       L    +++ PA++   ++R   V+  +      L
Sbjct: 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSL 401

Query: 175 ASQLGVGFFD---------------------DKLGALCMQWLKDKVYSIRDAAANNVKRL 213
             Q                              +     + +K+K    R    N +  L
Sbjct: 402 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL 461

Query: 214 AEEFGPDWA--MQHIVPQVLEMINNPHY--LYRMTILQAISLLAPVMGSEIT---CSQLL 266
                      +  +VP ++  +N+       ++  L  + ++      ++       L+
Sbjct: 462 VNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521

Query: 267 PVVINASKDRVPNIKFNVAKVLQSLI 292
           P V+    D    I      V Q L+
Sbjct: 522 PPVVACVGDPFYKITSEALLVTQQLV 547

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 42/379 (11%), Positives = 103/379 (27%), Gaps = 58/379 (15%)

Query: 2    DKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 58
                 ++    + L  L +             V+     L+ +++  V   A   +T + 
Sbjct: 661  KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720

Query: 59   RILNPELA--IQHILPCVKEL--SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL 114
            ++    L+     IL  +  L  S        SA+      +      +     LL +  
Sbjct: 721  KVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780

Query: 115  SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 174
              +  +   +          + + +     +       V     +  +   +      L 
Sbjct: 781  GPVYSQSTALTH--KQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA 838

Query: 175  ASQLGVGFFDDKLGA------LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW------- 221
               LG       L        + ++        ++ AA+  +  ++    P++       
Sbjct: 839  LLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQE 898

Query: 222  -----------------------------AMQHIVPQVLEMINNPHYLYRMTILQAISLL 252
                                          +++I   +L+         R  + + +  L
Sbjct: 899  ITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 958

Query: 253  APVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--KSIRPCLVE 310
              +    +     LP +           + +V   ++  I    Q +    K+     ++
Sbjct: 959  TLIDPETL-----LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK 1013

Query: 311  LSEDPDVDVRFFATQALQS 329
              EDPD++VR  A     S
Sbjct: 1014 TLEDPDLNVRRVALVTFNS 1032

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 40/206 (19%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           D S+ VR   A  L ++ +           V   ++ L+D +A VR AAA  + +I    
Sbjct: 30  DDSYYVRRAAAYALGKIGDE--------RAVEPLIKALKDEDAWVRRAAADALGQI---- 77

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             E A++ ++    +   D    VR + A V +G    +G +  +E L+      LKDE 
Sbjct: 78  GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ---IGDERAVEPLIK----ALKDED 125

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             VR+     L +    IG     +  +  +++  +D    VR +  + +     ++G  
Sbjct: 126 WFVRIAAAFALGE----IG----DERAVEPLIKALKDEDGWVRQSAADAL----GEIG-- 171

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAA 207
              +++ A   +  +      R  A 
Sbjct: 172 --GERVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 48/235 (20%)

Query: 97  APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 156
           AP+      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 157 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLA 214
           +D    VR A  + +         G   D+  +  L ++ LKD+   +R +AA  + ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 215 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 274
           +E          V  +++ + +  +  R   + A   L      EI   + +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALK 153

Query: 275 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
           D    ++ + A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 40/220 (18%)

Query: 30  DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSAL 89
           + V  Y++ L+D+   VR AAA         +  E A++ ++  +K    D    VR A 
Sbjct: 19  EKVEMYIKNLQDDSYYVRRAAA----YALGKIGDERAVEPLIKALK----DEDAWVRRA- 69

Query: 90  ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 149
           A   +G    +G +  +E L+      LKDE   VR +    L Q+          +  +
Sbjct: 70  AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQIG--------DERAV 114

Query: 150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 209
             +++  +D  W VR+A    +  +  +  V    + L       LKD+   +R +AA+ 
Sbjct: 115 EPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA----LKDEDGWVRQSAADA 166

Query: 210 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 249
           +  +  E         +   + ++        R   +  +
Sbjct: 167 LGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYL 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 40/206 (19%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           D S+ VR   A  L      +G E      V   ++ L+D +A VR AAA  + +I    
Sbjct: 25  DDSYYVRRAAAYAL----GKIGDE----RAVEPLIKALKDEDAWVRRAAADALGQI---- 72

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             E A++ ++    +   D    VR + A V +G    +G +  +E L+      LKDE 
Sbjct: 73  GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ---IGDERAVEPLIK----ALKDED 120

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
             VR+     L +    IG     +  +  +++  +D    VR +  + +     ++G  
Sbjct: 121 WFVRIAAAFALGE----IG----DERAVEPLIKALKDEDGWVRQSAADAL----GEIG-- 166

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAA 207
              +++ A   +  +      R  A 
Sbjct: 167 --GERVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 37/225 (16%), Positives = 86/225 (38%), Gaps = 44/225 (19%)

Query: 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 166
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 167 IIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 224
             + +         G   D+  +  L ++ LKD+   +R +AA  + ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 284
             V  +++ + +  +  R   + A   L      EI   + +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 285 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
           A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 45/238 (18%)

Query: 15  LYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCV 74
            +       PE      V  Y++ L+D+   VR AAA         +  E A++ ++  +
Sbjct: 4   SHHHHHHTDPE-----KVEMYIKNLQDDSYYVRRAAA----YALGKIGDERAVEPLIKAL 54

Query: 75  KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 134
           K    D    VR A A   +G    +G +  +E L+      LKDE   VR +    L Q
Sbjct: 55  K----DEDAWVRRA-AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQ 102

Query: 135 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 194
           +          +  +  +++  +D  W VR+A    +  +  +  V    + L       
Sbjct: 103 IG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA---- 146

Query: 195 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 252
           LKD+   +R +AA+ +  +  E         +   + ++        R   +  +   
Sbjct: 147 LKDEDGWVRQSAADALGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 39/362 (10%), Positives = 111/362 (30%), Gaps = 59/362 (16%)

Query: 2   DKSWRVR---YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 58
              W V+    +V   + E C      P   +++P  ++ L D +A VR      +++  
Sbjct: 370 HHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 428

Query: 59  RILNPELAIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIF 113
             +  +    +   ++  + +   DS++ V+ A  +    +      +    +  +L   
Sbjct: 429 HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 488

Query: 114 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAI 167
           +           L +   +  +   +G  L     +  ++              +    +
Sbjct: 489 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 548

Query: 168 IEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIR---------------------D 204
           +E +  +A+ L  GF  + + +   C+  ++  +                         D
Sbjct: 549 LECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALD 608

Query: 205 AAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TC 262
             +   + L        A  +I+  + + + +     R +    +  L       +    
Sbjct: 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI 668

Query: 263 SQLLPVVINASKDRVPNIKFN-------------------VAKVLQSLIPIVDQSVVEKS 303
           +  +P++         ++  N                   +  VL  L+ I+++    K+
Sbjct: 669 ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT 728

Query: 304 IR 305
           + 
Sbjct: 729 LL 730

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 12/224 (5%)

Query: 24  PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSS 79
           P      +    +  + D+   +R      +T I         P+L +  +   +     
Sbjct: 84  PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDY 142

Query: 80  DSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 136
           ++ +    AL  +    A IL  D     +  ++P FL   K   P +R + ++ ++Q  
Sbjct: 143 NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202

Query: 137 QVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCM 192
                 L+    S +  +  LA D    VR  +   + +L              +    +
Sbjct: 203 ISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYML 262

Query: 193 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
           Q  +D+  ++   A      LAE+      +   +P+++ ++ N
Sbjct: 263 QRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 46.3 bits (109), Expect = 9e-06
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 12/150 (8%)

Query: 189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQ 247
           + C+  + D    IR      +  +A +     W    ++P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 248 AISLLAPVMGSEITCSQ-------LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 300
           A+  +       +           ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 301 EK--SIRPCLVELSEDPDVDVRFFATQALQ 328
               S    L  L+ D + +VR    +AL 
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALV 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 64/401 (15%), Positives = 115/401 (28%), Gaps = 148/401 (36%)

Query: 7   VRYMVANQL---YE-LCEAVGPEPT-RSDVVPAYV----RLLRDNEAEVRIAAAGKVTK- 56
           V+  V   L   Y+ L   +  E    S +   Y+    RL  DN+            K 
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---------VFAKY 129

Query: 57  -ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---------DATI 106
            + R+  P L ++  L    EL        R A   +I G+    GK            +
Sbjct: 130 NVSRL-QPYLKLRQAL---LEL--------RPAKNVLIDGVLGS-GKTWVALDVCLSYKV 176

Query: 107 EQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDLLSQSLLPAIVE 154
           +  +   IF L+L     P+  L ++ KL          + +    I L   S+   +  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 155 LAEDR----------------HWRV------------------RLAIIEYIPLLASQLGV 180
           L + +                 W                     L+      +      +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI-----N 235
               D++ +L +++L  +            + L  E      +    P+ L +I     +
Sbjct: 297 TLTPDEVKSLLLKYLDCR-----------PQDLPRE------VLTTNPRRLSIIAESIRD 339

Query: 236 NP-------HYLY---RMTILQAISLLAPVMGSEI-----TCSQLLPVVINASKD-RVPN 279
                    H         I  ++++L P   +E        S + P          +P 
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLS-VFP------PSAHIP- 388

Query: 280 IKFNVAKVLQSL----IPIVDQSVVEKSIRPCLVELSEDPD 316
                  +L  +    I      VV K  +  LVE  + P 
Sbjct: 389 -----TILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPK 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 76/256 (29%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLR-----------DNEAEVRI 48
           ++   ++ Y +        +       R   + A +R LL+            N    + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 49  AAAGKVTKICRIL----NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 104
             A  ++  C+IL      ++           LS+ ++ H+       +   +  L  D 
Sbjct: 259 WNAFNLS--CKILLTTRFKQVT--------DFLSAATTTHIS------LDHHSMTLTPDE 302

Query: 105 TIEQLLPIFLSLLKDEFPD-------VRLNIISKL----------------DQVNQVIGI 141
             + LL  +L     + P         RL+II++                 D++  +I  
Sbjct: 303 V-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 142 DLLSQSLLPAIVELAEDRHWRVRLAIIE---YIP--LLA------SQLGVGFFDDKL--G 188
            L    L PA     E R    RL++     +IP  LL+       +  V    +KL   
Sbjct: 362 SL--NVLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 189 ALCMQWLKDKVYSIRD 204
           +L  +  K+   SI  
Sbjct: 415 SLVEKQPKESTISIPS 430

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 23/193 (11%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 154 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 207
           E      W+ R+  +E  +  +L+     +     + + LG       KD        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 208 NNVKRLAEEFGPDWAMQH----IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC- 262
            +V+ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 263 --SQLLPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSVVEKSIRPCLVELSED 314
               +L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 315 PDVDVRFFATQAL 327
               +R    ++ 
Sbjct: 203 TQPAIRTIGFESF 215

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 19/197 (9%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLL-RDNEAEVRIAAAGKVT 55
              W+ R     + ++   +   +        S+++  Y  ++ +D   +    AA  V 
Sbjct: 27  SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVE 86

Query: 56  KICRILNPELAIQH----ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQ 108
            IC  L      +     +   + + + +    V  A+   ++ +       A     E 
Sbjct: 87  LICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNED 146

Query: 109 LLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR 162
           +L   L  +K + P +R     + +  + +           L   ++P ++++  D    
Sbjct: 147 MLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPA 206

Query: 163 VRLAIIEYIPLLASQLG 179
           +R    E   +L    G
Sbjct: 207 IRTIGFESFAILIKIFG 223

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 41/309 (13%), Positives = 97/309 (31%), Gaps = 27/309 (8%)

Query: 5   WRVRY---MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           WR R    M    + +  + V         +P+ + L+ D   +V+   A  + +I   +
Sbjct: 383 WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442

Query: 62  NPELAIQH----ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
              +  Q     ++        D  +   +   T+I            +EQL     S +
Sbjct: 443 AESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPI 492

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
            + +P +   +I   ++++          S   A+  + E     V          +  +
Sbjct: 493 YNFYPALVDGLIGAANRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549

Query: 178 LG--VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 235
           LG  +   +++L     Q L++   +I    A  +++      P      ++     ++ 
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMGLFFRLLE 607

Query: 236 NPHY-LYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292
                     +  AIS LA  +G           P ++ A       +       +  + 
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667

Query: 293 PIVDQSVVE 301
             +++    
Sbjct: 668 NSLEEDFRR 676

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 45/331 (13%), Positives = 107/331 (32%), Gaps = 41/331 (12%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSD----VVPAYVRLLRDNEAEVRIAAAGKVTKI 57
           D+S +V+   A  +  + ++V            VV A +  L+D+  +V    +  +  +
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINL 480

Query: 58  CRIL---NPELAIQHILPCVKEL-----SSDSSQHVRSALATVIMGMAPILGKDA--TIE 107
              L    P          V  L       D+  + R++  + +  M          T  
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540

Query: 108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-----------------QSLLP 150
            +    +  L          +  +  Q  Q +  ++L+                   L+ 
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600

Query: 151 AIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAA 207
               L E +    +   +   I  LA+ LG GF  + +      ++ L      +   A 
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAV 660

Query: 208 NNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLY--RMTILQAISLLAPVMGSEIT-- 261
             +  ++     D+      ++  + +MI+NP+     +  +L     +A  +G++    
Sbjct: 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720

Query: 262 CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292
            + ++ + + A   +  N           ++
Sbjct: 721 LNDIMALCVAAQNTKPENGTLEALDYQIKVL 751

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 25/142 (17%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 87
            S  +      + D    VR   +  ++++      + A + +L  +     +    +R 
Sbjct: 10  HSSGLVPRGSHMADENKWVRRDVSTALSRM-----GDEAFEPLLESLS----NEDWRIRG 60

Query: 88  ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 147
           A A  I+G       +  +E L+     LL+D+   VR      L+Q    IG     + 
Sbjct: 61  A-AAWIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GER 104

Query: 148 LLPAIVELAEDRHWRVRLAIIE 169
           +  A+ +LAE      R   + 
Sbjct: 105 VRAAMEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 25/132 (18%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           D++  VR  V+  L  +           +     +  L + +  +R AAA     I    
Sbjct: 23  DENKWVRRDVSTALSRM---------GDEAFEPLLESLSNEDWRIRGAAA----WIIGNF 69

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
             E A++ ++  ++    D S  VRS  A  +      +G +     +      L +   
Sbjct: 70  QDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LAETGT 117

Query: 122 PDVRLNIISKLD 133
              R   ++ L+
Sbjct: 118 GFARKVAVNYLE 129

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 36/293 (12%), Positives = 97/293 (33%), Gaps = 25/293 (8%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR--ILNPELAIQH--ILPCVKELSSDSSQ 83
            +D VP +++LL     EV+  A   +  +        +  +Q   + P +   +S+   
Sbjct: 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS 230

Query: 84  HVRSALATVIMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVRLN---IISKLDQVNQ 137
            +R+A    +  +          + + Q LP    L+     +  ++    IS L    Q
Sbjct: 231 LIRTA-TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289

Query: 138 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQW 194
                ++   +   +VEL       V+   +  +  + +          +  +       
Sbjct: 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349

Query: 195 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQ----HIVPQVLEMINNPHYLYRMTILQAIS 250
           L     +I+  A   +  +      +        +++P +++++    Y  +     AIS
Sbjct: 350 LSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408

Query: 251 LLA------PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 297
             +      P +   +     +  + +  +     I       L++++ + + 
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEA 461

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 36/269 (13%), Positives = 92/269 (34%), Gaps = 31/269 (11%)

Query: 57  ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS 115
           +  + + E+  + +   V++L   S+ ++R       +    ++ K    +E  LP   +
Sbjct: 131 LGCMGSSEMC-RDLAGEVEKLLKTSNSYLRK---KAALCAVHVIRKVPELMEMFLPATKN 186

Query: 116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 175
           LL ++   V    +                  LL  + E + D     R  + + + +L 
Sbjct: 187 LLNEKNHGVLHTSV-----------------VLLTEMCERSPDMLAHFRKLVPQLVRILK 229

Query: 176 SQLGVGFFDDKL-GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 234
           + +  G+  +     +   +L+ ++  +      N    +E      AM  I+ QV    
Sbjct: 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE------AMNDILAQVATNT 283

Query: 235 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 294
                +    + + +  +  +          + ++     +   NI++     L   +  
Sbjct: 284 ETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT 343

Query: 295 VDQSVVEKSIRPCLVELSEDPDVDVRFFA 323
              +V        +V+  +D DV ++  A
Sbjct: 344 DHNAVQRHRST--IVDCLKDLDVSIKRRA 370

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 33/270 (12%), Positives = 86/270 (31%), Gaps = 29/270 (10%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 87
               + A + L  D +  +R  A  ++ +       E   +      + L +D S     
Sbjct: 63  ADSAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE--- 116

Query: 88  ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 147
               V   +  I   DA  +  L    S +      VR   I  L    + +  ++L++ 
Sbjct: 117 -FNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKE 173

Query: 148 LLPAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKD 197
           +   I+  ++          + + + I+  +  L +  G     +   +   L   +   
Sbjct: 174 VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPS 233

Query: 198 KVYSIRDAAANNVKRLAEEFGPDWA--------MQHIVPQVLEMINNPHYL-YRMTILQA 248
               + D      ++    F  +           + ++P +  +      L  ++ +L+ 
Sbjct: 234 DPDCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKL 292

Query: 249 ISLLAPVMGSEITCSQLLPVVINASKDRVP 278
           ++ ++   G        L  + +   + +P
Sbjct: 293 LAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 49/337 (14%), Positives = 107/337 (31%), Gaps = 55/337 (16%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 87
            +  + A    L D    +       +  +      +  ++ +L  + +L      +V +
Sbjct: 222 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 281

Query: 88  ALATVIMGMA-------PILGKDATIEQLLPIFLSLLKDEFPDVR------LNIISKLDQ 134
             A ++  +         ++ +   IE L+     L   +  D+       L  ++   Q
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVR--TVLRAGDREDITEPAICALRHLTSRHQ 339

Query: 135 VNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLAS---------QLGVGFFD 184
             ++    +     LP +V+L     HW +  A +  I  LA          + G     
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA---- 395

Query: 185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT 244
             +  L  Q L       +   +    +     G        + +++E            
Sbjct: 396 --IPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVR------MEEIVE-----------G 435

Query: 245 ILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVV 300
              A+ +LA  + +   I     +P+ +      + NI+   A VL  L    +  +++ 
Sbjct: 436 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 495

Query: 301 EKSIRPCLVELSEDPDVDVRFFATQALQ--SKDQVMM 335
            +     L EL    +  V  +A   L   S+D+   
Sbjct: 496 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 40/309 (12%), Positives = 92/309 (29%), Gaps = 48/309 (15%)

Query: 31  VVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNPELAIQH---ILPCVKELSSDSSQHVR 86
            +P   +LL D +  V   AA  V ++ +   +    ++    +   V+ + + +     
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 87  SALATVIMGMAPIL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 144
              A  +  ++    G  A  +   +P  + +L      V    I+              
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT-------------- 120

Query: 145 SQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGAL-CMQWLKDKVYS 201
                  +  L   +    ++A+     +  + + L             C+Q L      
Sbjct: 121 ------TLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------ 167

Query: 202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLA--PVMGS 258
              A  N   +L                ++ ++    Y     T  + + +L+       
Sbjct: 168 ---AYGNQESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 259 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 318
            I  +  +  +     D    +  N    L++L     +    + +   LV+L    D++
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 278

Query: 319 VRFFATQAL 327
           V   A   L
Sbjct: 279 VVTCAAGIL 287

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 40/323 (12%), Positives = 109/323 (33%), Gaps = 30/323 (9%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
              W+V++     L  L E V  +     +    V LL   + ++++ +A  +       
Sbjct: 274 SGDWQVQFSGLIALGYLKEFVEDKD---GLCRKLVSLLSSPDEDIKLLSAELLCHFPITD 330

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE---QLLPIFLSLLK 118
           + +L ++     ++     S      +  + +  +  I  ++  +    + L        
Sbjct: 331 SLDLVLEKCWKNIESEELIS-----VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFT 385

Query: 119 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLL----PAIVELAEDRHWRVRLAIIE-YIPL 173
              P+VR +I++ +  +++     L+++ +L      I E+A  +  + R  + +  I  
Sbjct: 386 SPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAI-KLLKKRRDLPKNLILH 444

Query: 174 LASQLGVGFF-----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 228
             + +G   +     DD +    + + K  +  +        + L  E      +  +  
Sbjct: 445 FMNVIGGSLYEPYSEDDFVSYEDLYFTKSGINVVGKDEILKNRCLLFECIMKSGLPDLQS 504

Query: 229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 288
            +    +   ++     +QA+    P   + I         +    DR  ++K    K  
Sbjct: 505 TIETTTSRT-FISLYRSVQALVKDTPYTPANIE-------ELEYYFDRCKDLKMAPLKEF 556

Query: 289 QSLIPIVDQSVVEKSIRPCLVEL 311
           +  +       +   + P   + 
Sbjct: 557 KKKLSAPGIRSIHPMVDPLYSDY 579

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 47/320 (14%), Positives = 100/320 (31%), Gaps = 39/320 (12%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 87
            +  + A    L D    +       +  +      +  ++ +L  + +L      +V +
Sbjct: 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 417

Query: 88  ALATVIMGMA-------PILGKDATIEQLLPIFLSLLKDEFPDVR------LNIISKLDQ 134
             A ++  +         ++ +   IE L+     L   +  D+       L  ++   Q
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVR--TVLRAGDREDITEPAICALRHLTSRHQ 475

Query: 135 VNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGAL--C 191
             ++    +     LP +V+L     HW +  A +  I  LA          + GA+   
Sbjct: 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 535

Query: 192 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAI 249
           +Q L       +   +    +    F     M+ IV      ++        R+ I    
Sbjct: 536 VQLLVRAHQDTQRRTSMGGTQQQ--FVEGVRMEEIVEACTGALHILARDIHNRIVIRGL- 592

Query: 250 SLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPC 307
                           +P+ +      + NI+   A VL  L    +  +++  +     
Sbjct: 593 --------------NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 638

Query: 308 LVELSEDPDVDVRFFATQAL 327
           L EL    +  V  +A   L
Sbjct: 639 LTELLHSRNEGVATYAAAVL 658

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 36/308 (11%), Positives = 92/308 (29%), Gaps = 46/308 (14%)

Query: 31  VVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNPELAIQH---ILPCVKELSSDSSQHVR 86
            +P   +LL D +  V   AA  V ++ +   +    ++    +   V+ + + +     
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210

Query: 87  SALATVIMGMAPIL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 144
              +  +  ++    G  A  +   +P  +++L      V  + I+              
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAIT-------------- 256

Query: 145 SQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGALCMQWLKDKVYSI 202
                  +  L   +    ++A+     +  + + L                    +  +
Sbjct: 257 ------TLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC------LQIL 303

Query: 203 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLA--PVMGSE 259
             A  N   +L                ++ ++    Y     T  + + +L+        
Sbjct: 304 --AYGNQESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 355

Query: 260 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDV 319
           I  +  +  +     D    +  N    L++L     +    + +   LV+L    D++V
Sbjct: 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 415

Query: 320 RFFATQAL 327
              A   L
Sbjct: 416 VTCAAGIL 423

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 45/301 (14%), Positives = 97/301 (32%), Gaps = 17/301 (5%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 57
           + S  V+    N L    E           R  ++       +  +  VR+AA   + KI
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244

Query: 58  CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
              L  +    ++ P +  ++ ++ +     +A   +     +  D  ++  +    +  
Sbjct: 245 MS-LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC-DEEMDLAIEASEAAE 302

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           +   P+      +K      V  +       L    E  +D  W    A    + LLA+ 
Sbjct: 303 QGRPPEHTSKFYAKGALQYLVPILT----QTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMI 234
                    +     + +K+  +  RDAA      + E   P      +   +P ++E++
Sbjct: 359 CEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417

Query: 235 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK---DRVPNIKFNVAKVLQSL 291
            +P  + R T    +  +  ++         L  ++          P +  NV     SL
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSL 477

Query: 292 I 292
            
Sbjct: 478 A 478

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 38/278 (13%), Positives = 90/278 (32%), Gaps = 14/278 (5%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKI 57
           + S  V+    N L    E       +       ++++    +  +  VR+AA   + KI
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244

Query: 58  CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL 117
              L  +    ++ P +  ++ ++ +     +A   +     +  +     L        
Sbjct: 245 MS-LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE--MDLAIEASEAA 301

Query: 118 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
           +   P    +       +  ++ I       L    E  +D  W    A    + LLA+ 
Sbjct: 302 EQGRPPEHTSKFYAKGALQYLVPILT---QTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358

Query: 178 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMI 234
                    +     + +K+  +  RDAA      + E   P      +   +P ++E++
Sbjct: 359 CEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417

Query: 235 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 272
            +P  + R T    +  +  ++         L  ++  
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 2   DKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 59
           DK      M A         + P  EP    +VPA      + + E++  A+  +  I  
Sbjct: 65  DKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVN 124

Query: 60  ILNPELAIQHILPCV-KELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSL 116
            +NP  AI+ +LP +   +   +    + A+      M           + +L+P+    
Sbjct: 125 AVNPV-AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSET 183

Query: 117 LKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVE 154
           + D   +V+    + + +  + +    I+    SL+  I +
Sbjct: 184 MWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 31  VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVKELSSDSSQHV 85
           +     R L    A +R  AA  +    +          L +  +   ++ L  D+   V
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 86  RSALATVIMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVI 139
           R      I  +                  + +  ++ +   ++     ++  L   +   
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 140 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 177
              L S  ++  +V L    H      ++  +  L + 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 23/224 (10%)

Query: 114 LSLLKDEFPDVRLNIISKL-DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 172
           L L+K  F       IS+L   +     + L+SQ            + ++  LA ++ + 
Sbjct: 21  LKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLF---------HKDFKQHLAALDSLV 71

Query: 173 LLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG------PDWAMQ 224
            LA           D L   C     +   +         K + E             + 
Sbjct: 72  RLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131

Query: 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 284
             VP +L          R ++   +++L+ V+G      ++ P++++A K +    +   
Sbjct: 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSEC 187

Query: 285 AKVLQSLIPIVDQSVVE-KSIRPCLVELSEDPDVDVRFFATQAL 327
             V++  I     S ++  S+   +     D DV+VR  A   L
Sbjct: 188 LLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVL 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.95
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.95
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.95
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.95
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.95
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.94
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.94
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.91
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.85
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.85
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.83
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.82
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.82
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.81
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.8
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.8
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.79
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.79
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.79
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.79
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.78
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.78
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.78
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.78
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.77
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.77
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.77
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.72
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.71
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.71
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.71
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.71
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.69
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.69
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.68
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.68
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.65
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.64
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.63
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.62
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.6
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.59
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.58
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.57
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.57
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.56
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.53
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.51
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.47
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.46
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.45
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.44
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.44
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.44
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.44
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.4
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.38
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.38
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.38
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.36
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.35
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.33
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.33
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.32
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.32
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.31
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.31
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.3
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.3
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.29
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.27
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.27
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.23
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.22
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.21
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.18
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.18
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.17
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.09
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.09
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.95
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.84
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.69
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.63
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.51
3grl_A	651	General vesicular transport factor P115; vesicle t	98.47
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.45
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.33
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.26
3grl_A	651	General vesicular transport factor P115; vesicle t	98.1
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	97.91
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.87
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	97.71
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.56
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.53
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.51
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.36
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.36
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.17
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	97.14
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.07
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.0
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	94.91
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.15
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.91
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.54
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.48
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	92.46
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.14
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	91.87
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	90.99
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	89.89
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	89.34
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	89.24
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.02
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.75
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	86.89
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.52
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.44
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	84.94
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	82.99
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	81.95

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=2e-41  Score=310.89  Aligned_cols=331  Identities=59%  Similarity=0.977  Sum_probs=308.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhHHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKEL   77 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~~l   77 (337)
                      |++|.||+.++++++.++..++++...+.++|.+.+++.|+++.||..++.+++.+++.++++    .+.+.++|.+..+
T Consensus       253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~  332 (588)
T 1b3u_A          253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL  332 (588)
T ss_dssp             CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence            789999999999999999988876666789999999999999999999999999999988765    4567899999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  157 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~  157 (337)
                      ++|++|.||..++.+++.++..+|++.....++|.+..+++|++++||..++.+++.+.+..+.+...+.++|.+.+..+
T Consensus       333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~  412 (588)
T 1b3u_A          333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE  412 (588)
T ss_dssp             HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999987767889999999999999999999999999999998887777889999999999


Q ss_pred             CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679          158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      |++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||+.|+.+++.+...+|.+++.+.++|.+..+..++
T Consensus       413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~  492 (588)
T 1b3u_A          413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP  492 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred             CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence            99999999999999999999998877788999999999999999999999999999999998877788999999999999


Q ss_pred             chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679          238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  317 (337)
                      +|.+|.+++.+++.++..+|.+.+.+.++|.+...+.|++++||.+++++|+.+.+.+|.+...+.+.|.|..+.+|+++
T Consensus       493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~  572 (588)
T 1b3u_A          493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV  572 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCch
Confidence            99999999999999999998888889999999999999999999999999999999999887778999999999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q 019679          318 DVRFFATQALQSKDQ  332 (337)
Q Consensus       318 ~vr~~a~~al~~l~~  332 (337)
                      +||..|+++++.+..
T Consensus       573 ~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          573 DVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999999998753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=4.6e-40  Score=301.81  Aligned_cols=334  Identities=23%  Similarity=0.330  Sum_probs=301.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.||..++++++.++...+++...+.++|.+.++++|+++.||..++.+++.+++.++++...+.++|.+.++.+|+
T Consensus       175 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~  254 (588)
T 1b3u_A          175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK  254 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCC
Confidence            88999999999999999998887666678999999999999999999999999999999998888888999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh----hHHhhHHHHHHHHhc
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAE  157 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~  157 (337)
                      +|.||..++++++.++...|++.....++|.+.++++|+++.||..++.+++.+++..+.+    .+.+.++|.+..+++
T Consensus       255 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~  334 (588)
T 1b3u_A          255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS  334 (588)
T ss_dssp             SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc
Confidence            9999999999999999988877767889999999999999999999999999999988765    456889999999999


Q ss_pred             CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679          158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      |++|.+|..++..++.++..+|.+...+.++|.+..+++|+++.||..++.+++.+...+|.+...+.++|.+...+.|+
T Consensus       335 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~  414 (588)
T 1b3u_A          335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA  414 (588)
T ss_dssp             CSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998877788999999999999999999999999999998887766778999999999999


Q ss_pred             chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679          238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  317 (337)
                      +|++|.+++.+++.++..+|.+.+.+.++|.+...+.|+++.||.+++.+++.++..+|++.+.+.++|.|..+.+|+++
T Consensus       415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~  494 (588)
T 1b3u_A          415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY  494 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred             CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH
Confidence            99999999999999988888877777889999999999999999999999999988888776667788888888888888


Q ss_pred             cHHHHHHHHHHHHHHhhh
Q 019679          318 DVRFFATQALQSKDQVMM  335 (337)
Q Consensus       318 ~vr~~a~~al~~l~~~~~  335 (337)
                      .+|..++.+++.++..++
T Consensus       495 ~~R~~a~~~l~~l~~~~~  512 (588)
T 1b3u_A          495 LHRMTTLFCINVLSEVCG  512 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            888888888888877654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.97  E-value=1.6e-28  Score=234.19  Aligned_cols=333  Identities=18%  Similarity=0.193  Sum_probs=279.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCV   74 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l   74 (337)
                      |+++.||..++++++.++...++. .|++++|.+.+.+.++++.+|..++.+++.+++..+....       ...++|.+
T Consensus       101 ~~~~~vr~~~a~~i~~ia~~~~~~-~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l  179 (852)
T 4fdd_A          101 DSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF  179 (852)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTTT-TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHH
Confidence            678899999999999999987654 4799999999999999999999999999999998876522       45688888


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHH
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLP  150 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp  150 (337)
                      .++++|+++.||..++++++.+....+...  ..+.+++.+..++.|+++.||..++.++..+++..+..  ...+.+++
T Consensus       180 ~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~  259 (852)
T 4fdd_A          180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE  259 (852)
T ss_dssp             TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            889999999999999999999887554322  23578899999999999999999999999999875431  22356888


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhC----hhhHHHHHHHHHHHHc-----------cc-----------cchHHHH
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWL-----------KD-----------KVYSIRD  204 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l-----------~d-----------~~~~vr~  204 (337)
                      .+....+|.++.+|..+++.+..+++...    -..+.+.++|.+++.+           .|           .+|.+|.
T Consensus       260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            88888999999999999999988875321    1224567889998887           44           5678999


Q ss_pred             HHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHH
Q 019679          205 AAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKF  282 (337)
Q Consensus       205 ~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~  282 (337)
                      ++..+++.++..+| +...+.++|.+.+.+.+++|++|.+++.+++.+++..+..  .+.+.++|.+...+.|+++.||.
T Consensus       340 ~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~  418 (852)
T 4fdd_A          340 CSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS  418 (852)
T ss_dssp             HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999987 4466789999999999999999999999999999877642  35677999999999999999999


Q ss_pred             HHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          283 NVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       283 ~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +++.+++.+++.+++.   .+...+++.|.+.+.|++++||..|+.+|+.+.+..++
T Consensus       419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999877642   34567888888888899999999999999999887654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.95  E-value=2.8e-25  Score=212.34  Aligned_cols=332  Identities=12%  Similarity=0.086  Sum_probs=274.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH-----HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE-----LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~-----~~~~~ll~~l~   75 (337)
                      +++..+|..++++++.++....+...|++++|.+.+.+.++ ++.+|..++.++..+++..+++     .....+++.+.
T Consensus       106 ~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~  185 (861)
T 2bpt_A          106 SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV  185 (861)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Confidence            56788999999999999998766545799999999999998 9999999999999999876543     34566888888


Q ss_pred             HhcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-
Q 019679           76 ELSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-  146 (337)
Q Consensus        76 ~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-  146 (337)
                      +.++|+  ++.||..++++++.+...++...    ....+++.+.+.+.+.++.+|..++.++..+++..+..  .... 
T Consensus       186 ~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~  265 (861)
T 2bpt_A          186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ  265 (861)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH
T ss_pred             HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887  89999999999998776554221    12468888889999999999999999999999876532  2224 


Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-------------------hhHHHHHHHHHHHHccc-------cch
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-------------------GFFDDKLGALCMQWLKD-------KVY  200 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~l~d-------~~~  200 (337)
                      .+++.+...+.|.+..+|..+++.+..++.....                   ..+.+.++|.++..+.+       +++
T Consensus       266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~  345 (861)
T 2bpt_A          266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDW  345 (861)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence            7778888888999999999999999988775310                   12346788888888864       457


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCC
Q 019679          201 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRV  277 (337)
Q Consensus       201 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~  277 (337)
                      .+|.++..+++.++..+| +...+.+++.+.+.+.+++|.+|.+++.+++.++...+.+   .+.+.++|.+...+.|++
T Consensus       346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~  424 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS  424 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred             cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999887 4456778999999999999999999999999999887633   245578999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          278 PNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       278 ~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +.||.+++.+++.++..+++    ..+...++|.+...++|+ ++||..+++++..+.+.++
T Consensus       425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  485 (861)
T 2bpt_A          425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcc
Confidence            99999999999999988764    235677888888888886 9999999999999988765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.95  E-value=3.6e-26  Score=217.99  Aligned_cols=332  Identities=17%  Similarity=0.160  Sum_probs=270.7

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD   80 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d   80 (337)
                      .+|.||+.++.+++.++...|+. ..+.++|.+.+.+.|+++.+|.+++.+++.+++..+..  .+...++|.+..+++|
T Consensus       333 ~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d  411 (852)
T 4fdd_A          333 SDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD  411 (852)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC
Confidence            68999999999999999998854 45789999999999999999999999999999876543  3456788999999999


Q ss_pred             CcHHHHHHHHHHHHhcCcccChh---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHH
Q 019679           81 SSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL  155 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~  155 (337)
                      +++.||..++.+++.++...+++   .....+++.+.+.+.|+++.||..++.+++.+++..+.+  .+.+.+++.+...
T Consensus       412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~  491 (852)
T 4fdd_A          412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA  491 (852)
T ss_dssp             SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence            99999999999999999866532   344678899999999999999999999999999887753  2446788888888


Q ss_pred             hcCCchHHHHHHHHHhhHhHhhhChh----hHHHHHHHHHH---HHccccchHHHHHHHHHHHHHHHHhChHH--HHhhH
Q 019679          156 AEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHI  226 (337)
Q Consensus       156 ~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l  226 (337)
                      +++.+......++++++.++...|..    .+.+.++|.+.   ..+.|.++.+| .++.+++.++..+|...  +.+.+
T Consensus       492 l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i  570 (852)
T 4fdd_A          492 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPV  570 (852)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHH
Confidence            87777777777888888888776643    36778888887   45678888886 78999999999987643  23445


Q ss_pred             HHHHHHhhc-----------------CcchHHHHHHHHHHHHhccccChHH--H--HhhHHHHHHhhccCCChhHHHHHH
Q 019679          227 VPQVLEMIN-----------------NPHYLYRMTILQAISLLAPVMGSEI--T--CSQLLPVVINASKDRVPNIKFNVA  285 (337)
Q Consensus       227 ~~~l~~~~~-----------------~~~~~vR~~~~~~l~~l~~~~~~~~--~--~~~l~~~l~~~l~d~~~~vr~~a~  285 (337)
                      ++.+.+.+.                 .++...|.+++..++.++..+|.+.  +  .+.+++.+..++.|+.+.||..+.
T Consensus       571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~  650 (852)
T 4fdd_A          571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF  650 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence            554433332                 1245689999999999998888553  2  257899999999999999999999


Q ss_pred             HHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          286 KVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       286 ~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      .+++.++..++..  .+...++|.+.+.+++..+.+|..|+++++.++..+|+
T Consensus       651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~  703 (852)
T 4fdd_A          651 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI  703 (852)
T ss_dssp             HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence            9999999888764  34467888888888888899999999999999998875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.95  E-value=1.7e-25  Score=213.82  Aligned_cols=333  Identities=12%  Similarity=0.163  Sum_probs=276.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |.+|.+|..++++++.++..+|... .+.++|.+.+.+.|+++.+|.+++.+++.+++..+++   .+...++|.+.+.+
T Consensus       342 d~~~~~r~~a~~~L~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l  420 (861)
T 2bpt_A          342 DDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM  420 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG
T ss_pred             cccCcHHHHHHHHHHHHHHHccHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence            4579999999999999999998544 5789999999999999999999999999999877644   33456888888899


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---h---hHHhhH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSL  148 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l  148 (337)
                      +|+++.||..++.+++.++..++.    ......++|.+.+.+.|+ +.||..++.++..+++..+.   +   .+.+.+
T Consensus       421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~i  499 (861)
T 2bpt_A          421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPAL  499 (861)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            999999999999999999987654    234578899999999887 99999999999999988751   2   344667


Q ss_pred             HHHHHHHhc--CCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc---------------cchHHHHHHHHH
Q 019679          149 LPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD---------------KVYSIRDAAANN  209 (337)
Q Consensus       149 lp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~  209 (337)
                      ++.+.+.++  |.++.+|..+++.++.++...+...  +.+.++|.+++.+.+               ....+|..++.+
T Consensus       500 l~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  579 (861)
T 2bpt_A          500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV  579 (861)
T ss_dssp             HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence            888888886  4558999999999999999887653  456677777777653               356789999999


Q ss_pred             HHHHHHHhChH--HHHhhHHHHHHHhhcCcch-HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHH
Q 019679          210 VKRLAEEFGPD--WAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       210 l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~-~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                      ++.+...+|.+  .+.+.+++.+...+++.++ .+|..++.+++.++...|..  .+.+.++|.+...+.++++.+|..+
T Consensus       580 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a  659 (861)
T 2bpt_A          580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA  659 (861)
T ss_dssp             HHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            99999988764  2356788999999988777 89999999999998877754  3567899999999999999999999


Q ss_pred             HHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCC--ccHHHHHHHHHHHHHHhhhC
Q 019679          285 AKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       285 ~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~l~~~~~~  336 (337)
                      +.+++.++..+|..  .+...+++.+...+.+++  +++|..+..+++.++..+|+
T Consensus       660 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence            99999999888764  345678888888777654  88999999999999988775

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.95  E-value=2.3e-25  Score=198.19  Aligned_cols=307  Identities=17%  Similarity=0.178  Sum_probs=247.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKE   76 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~   76 (337)
                      ++++.+ +.++.+++.++...+++..|++++|.+.+.+.++  ++.+|..++.+++.+++...++   .+...+++.+.+
T Consensus       101 ~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~  179 (462)
T 1ibr_B          101 TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ  179 (462)
T ss_dssp             CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHH
T ss_pred             CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHH
Confidence            344556 7789999999998877555799999999999998  9999999999999999876432   334568888888


Q ss_pred             hcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-h
Q 019679           77 LSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-S  147 (337)
Q Consensus        77 l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~  147 (337)
                      +++|+  ++.||..++++++.+...++...    ....+++.+.+.+.+.++.+|..++.++..+++..+..  ...+ .
T Consensus       180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~  259 (462)
T 1ibr_B          180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA  259 (462)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTT
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888  79999999999999776544221    22456888888889999999999999999999876532  2335 7


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhh-------------------C-h---hhHHHHHHHHHHHHcc-------c
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-V---GFFDDKLGALCMQWLK-------D  197 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-------------------~-~---~~~~~~l~~~l~~~l~-------d  197 (337)
                      +++.+....++.+..+|..+++.+..++...                   . .   +.+.+.++|.+++.+.       |
T Consensus       260 l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~  339 (462)
T 1ibr_B          260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD  339 (462)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccccc
Confidence            8888888889999999999999988887652                   0 0   1134678888888874       3


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK  274 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~  274 (337)
                      ++|.+|.+|..+++.++..+| +...+.++|.+.+.+++++|++|.+++.+++.+++..+.+   ...+.++|.+...+.
T Consensus       340 ~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~  418 (462)
T 1ibr_B          340 DDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK  418 (462)
T ss_dssp             TCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred             ccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence            467999999999999999998 5567789999999999999999999999999999876532   245679999999999


Q ss_pred             CCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHh
Q 019679          275 DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVE  310 (337)
Q Consensus       275 d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~  310 (337)
                      |+++.||.+|+.+|+.+++.+++.    .+...+++.|..
T Consensus       419 d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~  458 (462)
T 1ibr_B          419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE  458 (462)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            999999999999999999988763    233445555544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.95  E-value=1.8e-24  Score=207.14  Aligned_cols=331  Identities=16%  Similarity=0.145  Sum_probs=270.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKE   76 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~   76 (337)
                      ++++.+ +.++++++.++...++...|++++|.+.+.+.++  ++.+|..++.++..+++.+.++.   ....+++.+.+
T Consensus       101 ~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~  179 (876)
T 1qgr_A          101 TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ  179 (876)
T ss_dssp             TCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH
T ss_pred             CCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHH
Confidence            344566 8889999999998777556899999999999998  99999999999999998876542   34557777888


Q ss_pred             hcCCC--cHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHh-h
Q 019679           77 LSSDS--SQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-S  147 (337)
Q Consensus        77 l~~d~--~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~  147 (337)
                      .++++  ++.+|..++++++.+...++...    ....+++.+.+.+.+.++.+|..++.++..+++..+..  .... .
T Consensus       180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  259 (876)
T 1qgr_A          180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA  259 (876)
T ss_dssp             HHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTT
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            88877  79999999999999887655321    12357888888899999999999999999999876532  2234 7


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--------------------hh---hHHHHHHHHHHHHcc-------c
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------------------VG---FFDDKLGALCMQWLK-------D  197 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------------------~~---~~~~~l~~~l~~~l~-------d  197 (337)
                      +++.+.....+.+..+|..+++.+..+++...                    ..   ...+.++|.+++.+.       |
T Consensus       260 l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~  339 (876)
T 1qgr_A          260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD  339 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCT
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccc
Confidence            88888888889999999999999888876420                    00   123678888888875       4


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK  274 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~  274 (337)
                      ++|.+|.++..+++.++..+|. ...+.++|.+...+.|++|++|.+++.+++.++...+.+   .+...++|.+...+.
T Consensus       340 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~  418 (876)
T 1qgr_A          340 DDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK  418 (876)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999998874 456778999999999999999999999999999888743   345678999999999


Q ss_pred             CCChhHHHHHHHHHHHHhhhhcH----HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          275 DRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       275 d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      |+++.||.+++.+++.+++.+++    ..+...+++.+...++|+ ++||..+++++..+...++
T Consensus       419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988764    234577888888888885 8999999999999998765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.94  E-value=1.4e-25  Score=221.59  Aligned_cols=332  Identities=14%  Similarity=0.139  Sum_probs=268.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--------HHHHhhhHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQHILPC   73 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~~~~~ll~~   73 (337)
                      |++|.||+.++.+++.++..+++ ...+.+++.+.+.+.|+++.+|.+++.+++.++..+++.        .+.+.++|.
T Consensus        59 d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~  137 (1230)
T 1u6g_C           59 DKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGR  137 (1230)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHH
Confidence            78999999999999999987765 335679999999999999999999999999999988865        256789999


Q ss_pred             hHHhcCC-CcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679           74 VKELSSD-SSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  150 (337)
Q Consensus        74 l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp  150 (337)
                      +...++| +++.+|..++.+++.+++..|+..  ..+.+++.+...+.|+++.||..++.+++.++...+.+. .+.++|
T Consensus       138 L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~  216 (1230)
T 1u6g_C          138 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIE  216 (1230)
T ss_dssp             HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHH
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHH
Confidence            9998884 889999999999999886555422  347789999999999999999999999999998877554 356777


Q ss_pred             HHHHHhcCC-chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhh
Q 019679          151 AIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQH  225 (337)
Q Consensus       151 ~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~  225 (337)
                      .+.+.+.+. ++.+|..++++++.++...|...  +.+.++|.+...+.|+++.||+.++.+++.++..++.+  .+.+.
T Consensus       217 ~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~  296 (1230)
T 1u6g_C          217 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST  296 (1230)
T ss_dssp             HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHH
Confidence            777665433 35788899999999998877532  44679999999999999999999999999999987654  24566


Q ss_pred             HHHHHHHhhc-------------------------------------CcchHHHHHHHHHHHHhccccCh--HHHHhhHH
Q 019679          226 IVPQVLEMIN-------------------------------------NPHYLYRMTILQAISLLAPVMGS--EITCSQLL  266 (337)
Q Consensus       226 l~~~l~~~~~-------------------------------------~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~  266 (337)
                      ++|.+...+.                                     |..|.+|.+++.+++.++...+.  ..+.+.++
T Consensus       297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~  376 (1230)
T 1u6g_C          297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS  376 (1230)
T ss_dssp             HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTH
T ss_pred             HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            7777655442                                     12488999999999999886664  45677889


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcH---------------------HHHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------------------SVVEKSIRPCLVELSEDPDVDVRFFATQ  325 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---------------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~  325 (337)
                      |.+...+.|+++.||.+++.++..+....+.                     ..+...++|.+.+.++|+++.+|..++.
T Consensus       377 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~  456 (1230)
T 1u6g_C          377 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN  456 (1230)
T ss_dssp             HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHH
Confidence            9999999999999999999999988876532                     2334567777777799999999999999


Q ss_pred             HHHHHHHhhh
Q 019679          326 ALQSKDQVMM  335 (337)
Q Consensus       326 al~~l~~~~~  335 (337)
                      +++.+....+
T Consensus       457 ~L~~l~~~~~  466 (1230)
T 1u6g_C          457 MLTELVNVLP  466 (1230)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHHch
Confidence            9999887643

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.94  E-value=2.8e-24  Score=212.39  Aligned_cols=331  Identities=14%  Similarity=0.131  Sum_probs=266.1

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcC-
Q 019679            5 WRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS-   79 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~-   79 (337)
                      +.+|..++++++.++...|...  ..+.++|.+.+.+.|+++++|..++.+++.+++.++.+  .+...++|.+.+.+. 
T Consensus       228 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~  307 (1230)
T 1u6g_C          228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY  307 (1230)
T ss_dssp             SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence            4677788888888888776532  24679999999999999999999999999999987653  345556666544332 


Q ss_pred             ------------------------------------CCcHHHHHHHHHHHHhcCcccCh--hhHHhhhHHHHHHhhcCCC
Q 019679           80 ------------------------------------DSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEF  121 (337)
Q Consensus        80 ------------------------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~  121 (337)
                                                          |.+|.||.+++.+++.++...++  ......++|.+...+.|.+
T Consensus       308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~  387 (1230)
T 1u6g_C          308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE  387 (1230)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred             CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence                                                23578999999999999887664  3455788999999999999


Q ss_pred             hhHHHHHHHhHHHhHhhhch---------------------hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679          122 PDVRLNIISKLDQVNQVIGI---------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       122 ~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      +.||..++.++..+.+..+.                     +.+.+.++|.+.+.++|++|.+|..++..++.++..++.
T Consensus       388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~  467 (1230)
T 1u6g_C          388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG  467 (1230)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence            99999999999998876542                     234466788888889999999999999999999887643


Q ss_pred             --hhHHHHHHHHHHHHccccch--HHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679          181 --GFFDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLA  253 (337)
Q Consensus       181 --~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~  253 (337)
                        ..+.+.++|.+...++|+++  .+|..++..++.+....|++.   +.+.++|.+...+.|+++++|..++.+++.++
T Consensus       468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence              23678899999999999875  999999999999988777663   46679999999999999999999999999988


Q ss_pred             cccCh---------HHHHhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhcHH------------------------
Q 019679          254 PVMGS---------EITCSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQS------------------------  298 (337)
Q Consensus       254 ~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~------------------------  298 (337)
                      +.+|.         ..+.+.++|.+...+  .|.++++|.+++.+++.++...|..                        
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~  627 (1230)
T 1u6g_C          548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT  627 (1230)
T ss_dssp             HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHH
T ss_pred             HHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHH
Confidence            76654         356788999999998  7888999999999999998776642                        


Q ss_pred             ------------------HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          299 ------------------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       299 ------------------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                                        .+...++|.|...+.|.++.+|..++++++.+....+
T Consensus       628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence                              1123445555556667788899999999999887765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.94  E-value=3.7e-24  Score=205.04  Aligned_cols=333  Identities=15%  Similarity=0.141  Sum_probs=268.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |.+|.+|+.++.+++.++..++... .+.++|.+.+.+.|+++.+|.+++.+++.+++..+++   .+...++|.+...+
T Consensus       339 ~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l  417 (876)
T 1qgr_A          339 DDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM  417 (876)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999999988543 5688999999999999999999999999999887744   34566889898999


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChh----hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--------------
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------------  140 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------------  140 (337)
                      +|+++.||..++.+++.++...++.    .....+++.+...+.|+ +.||..++.++..+++..+              
T Consensus       418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~  496 (876)
T 1qgr_A          418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPAT  496 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccc
Confidence            9999999999999999999876642    34578889999999885 9999999999999998765              


Q ss_pred             --hhhHHhhHHHHHHHHhcCC---chHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccc-----------cc---
Q 019679          141 --IDLLSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKD-----------KV---  199 (337)
Q Consensus       141 --~~~~~~~llp~l~~~~~d~---~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d-----------~~---  199 (337)
                        ...+.+.++|.+.+.+.+.   +..+|..++++++.++...|.+.  +...++|.+...+.+           .+   
T Consensus       497 ~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~  576 (876)
T 1qgr_A          497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ  576 (876)
T ss_dssp             CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHH
T ss_pred             hhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHH
Confidence              1234567888888887664   46899999999999999887543  445677777665542           22   


Q ss_pred             -hHHHHHHHHHHHHHHHHhC-hHH--HHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChH--HHHhhHHHHHHh
Q 019679          200 -YSIRDAAANNVKRLAEEFG-PDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVIN  271 (337)
Q Consensus       200 -~~vr~~a~~~l~~~~~~~~-~~~--~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~  271 (337)
                       +.+|..++.+++.+...+| .+.  +.+.++|.+...+++++  +.+|..++.+++.++...|..  .+...++|.+..
T Consensus       577 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~  656 (876)
T 1qgr_A          577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI  656 (876)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             5688999999999998887 432  35678899999988765  589999999999998776643  345678999999


Q ss_pred             hccCC-ChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC--CCccHHHHHHHHHHHHHHhhhC
Q 019679          272 ASKDR-VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED--PDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       272 ~l~d~-~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      .+.+. ++.||..++.+++.++..+|..  .+...+++.+...+.+  .+.++|..+..+++.++..+|+
T Consensus       657 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~  726 (876)
T 1qgr_A          657 GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             HHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence            99887 8999999999999999888753  3456778888777665  4678999999999999988775

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.93  E-value=2.2e-24  Score=191.88  Aligned_cols=331  Identities=15%  Similarity=0.133  Sum_probs=262.2

Q ss_pred             CChHHHHHHHHHHHHHHHH---------------hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 019679            3 KSWRVRYMVANQLYELCEA---------------VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI   67 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~---------------~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~   67 (337)
                      .++.+|+.++..+..+.+.               ++++ ....+-..+.+.+.++++.+ ..++.+++.++....+....
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~-~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w  126 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDAN-ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW  126 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHH-HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc
Confidence            4688999999999988632               1111 12346667778888888888 88999999999876553233


Q ss_pred             HhhhHhhHHhcCCC--cHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCC--ChhHHHHHHHhHHHhHhhhc
Q 019679           68 QHILPCVKELSSDS--SQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIG  140 (337)
Q Consensus        68 ~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~  140 (337)
                      ..++|.+.+.++++  ++.+|..++.+++.+++....   ......+++.+...+.|.  ++.||..+++++..+...++
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            57888888888888  999999999999999875522   123467889999999998  79999999999998765543


Q ss_pred             h----hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHH-HHHHHHHHHccccchHHHHHHHHHHHHH
Q 019679          141 I----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDD-KLGALCMQWLKDKVYSIRDAAANNVKRL  213 (337)
Q Consensus       141 ~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~  213 (337)
                      .    ..+.+.+++.+.+...+.++.+|..+++++..++...+..  .+.+ .+++.+...++|.+..||..++..+..+
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~  286 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            2    1233457888888889999999999999999999877543  2345 7888888899999999999999999888


Q ss_pred             HHHh------------------C--h---HHHHhhHHHHHHHhhcC-------cchHHHHHHHHHHHHhccccChHHHHh
Q 019679          214 AEEF------------------G--P---DWAMQHIVPQVLEMINN-------PHYLYRMTILQAISLLAPVMGSEITCS  263 (337)
Q Consensus       214 ~~~~------------------~--~---~~~~~~l~~~l~~~~~~-------~~~~vR~~~~~~l~~l~~~~~~~~~~~  263 (337)
                      +...                  .  .   +.+...++|.+.+.+.+       .+|.+|.++..+++.++..+|. ...+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~  365 (462)
T 1ibr_B          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP  365 (462)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH
T ss_pred             HHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH
Confidence            7652                  0  0   11235678888777743       4689999999999999998884 5667


Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      .++|.+...+.++++.+|.+++.+++.+++...++   .....++|.+..+++|+++.||..|+++|+.+...+++
T Consensus       366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            89999999999999999999999999999865532   23367889999999999999999999999999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=6.4e-23  Score=181.90  Aligned_cols=332  Identities=14%  Similarity=0.077  Sum_probs=260.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHh-CCCC---ccc-chHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAV-GPEP---TRS-DVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE---LAIQHILP   72 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~-~~~~---~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~   72 (337)
                      ++++.+|..++..+..+.... .+..   ... .++|.+.+.+.++ ++.+|..++.++..++...+..   .....++|
T Consensus        31 s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  110 (450)
T 2jdq_A           31 SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP  110 (450)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHH
Confidence            467889999999999987532 2211   123 6899999999988 8999999999999998642221   22356899


Q ss_pred             hhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch---hhHH
Q 019679           73 CVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLS  145 (337)
Q Consensus        73 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~  145 (337)
                      .+.++++++++.+|..++.+|++++.....   ......++|.+.+++.+ .++.+|..++.+++.++...++   ....
T Consensus       111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  190 (450)
T 2jdq_A          111 IFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV  190 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            999999999999999999999999874321   11234688999999985 7899999999999999865311   2334


Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--  220 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--  220 (337)
                      ..++|.+.+++.+.++.+|..++..+..++.....   ......++|.++.++.++++.+|..++.+++.++...+..  
T Consensus       191 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  270 (450)
T 2jdq_A          191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ  270 (450)
T ss_dssp             GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHH
Confidence            67899999999999999999999999998764321   1122357899999999999999999999999987543211  


Q ss_pred             -HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          221 -WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       221 -~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                       .....++|.+..++.++++.+|..++.+++.++.....   ......++|.+..++.++++.||..++.+|+.++....
T Consensus       271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~  350 (450)
T 2jdq_A          271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS  350 (450)
T ss_dssp             HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence             12236899999999999999999999999999864321   12235789999999999999999999999999987533


Q ss_pred             HH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          297 QS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       297 ~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ++    .....++|.|..+++++++++|..++++|..+...
T Consensus       351 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            22    22346899999999999999999999999998864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=8.1e-23  Score=184.89  Aligned_cols=333  Identities=13%  Similarity=0.074  Sum_probs=261.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE---LAIQHILPC   73 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~   73 (337)
                      ++++.+|..++.++..+.......    .....++|.+.+++.++ ++.+|..++.+|+.++...+..   ......+|.
T Consensus        98 s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~  177 (530)
T 1wa5_B           98 SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL  177 (530)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHH
Confidence            457899999999999887543221    11246899999999997 8999999999999998743221   223457899


Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhh
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQS  147 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~  147 (337)
                      +.++++++++.+|..++.+|++++...+   .......++|.+..++.+.++.+|..++.++..++...+   .......
T Consensus       178 Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  257 (530)
T 1wa5_B          178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ  257 (530)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence            9999999999999999999999986422   112235689999999999999999999999999986531   1233467


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW  221 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~  221 (337)
                      ++|.+..++.+.++.+|..++.++..++...+.   ......++|.+..++.++++.+|..|+.+++.++...+.   ..
T Consensus       258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  337 (530)
T 1wa5_B          258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV  337 (530)
T ss_dssp             GHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH
Confidence            899999999999999999999999999864321   112235789999999999999999999999998743211   11


Q ss_pred             HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-
Q 019679          222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  297 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-  297 (337)
                      ....++|.+..++.++++.+|..++++++.++.....   ......++|.+..++.++++.+|..++.+|+.++...++ 
T Consensus       338 ~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  417 (530)
T 1wa5_B          338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR  417 (530)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            2346899999999999999999999999999864321   112346889999999999999999999999999875433 


Q ss_pred             -H----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          298 -S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       298 -~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                       +    .....++|.|..++.++++++|..+.++|..+....
T Consensus       418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~  459 (530)
T 1wa5_B          418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG  459 (530)
T ss_dssp             THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence             2    233458899999999999999999999999987643

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=6.1e-22  Score=175.58  Aligned_cols=328  Identities=13%  Similarity=0.070  Sum_probs=253.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHh
Q 019679            4 SWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKEL   77 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l   77 (337)
                      ++.+|..++.++..++..-..   .......+|.+.+++.++++.+|..++.+|+.++...+..   .....++|.+.++
T Consensus        78 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~  157 (450)
T 2jdq_A           78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL  157 (450)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            789999999999998852111   1122468999999999999999999999999998753221   2234578888888


Q ss_pred             cCC-CcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHH
Q 019679           78 SSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLP  150 (337)
Q Consensus        78 ~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp  150 (337)
                      +++ +++.+|..++.++++++...+   .......++|.+.+++.+.++.+|..++.++..++.....   ......++|
T Consensus       158 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  237 (450)
T 2jdq_A          158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR  237 (450)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence            885 799999999999999986431   1223367899999999999999999999999999864321   122345889


Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHh
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQ  224 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~  224 (337)
                      .+.+++.++++.+|..++..++.++...+..   .....++|.+..++.++++.+|..|+.+++.++.....   .....
T Consensus       238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~  317 (450)
T 2jdq_A          238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA  317 (450)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999988653221   11235889999999999999999999999998752211   11224


Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  298 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--  298 (337)
                      .++|.+.+.+.+++..+|..++.+++.++.....+    .....++|.+..++.++++.+|..++.+|..+....+..  
T Consensus       318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  397 (450)
T 2jdq_A          318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAK  397 (450)
T ss_dssp             THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Confidence            78899999999999999999999999997654332    223468999999999999999999999999998754321  


Q ss_pred             -------HHHHhh-----hHHHHhhhCCCCccHHHHHHHHHHHHH
Q 019679          299 -------VVEKSI-----RPCLVELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       299 -------~~~~~i-----~~~l~~l~~d~~~~vr~~a~~al~~l~  331 (337)
                             .+...+     ++.|..+.++++.+|+..|..+|..+-
T Consensus       398 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          398 RNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                   122233     567778888888999999988887764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.91  E-value=7.9e-22  Score=178.41  Aligned_cols=328  Identities=9%  Similarity=0.054  Sum_probs=256.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHh
Q 019679            4 SWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKEL   77 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l   77 (337)
                      ++.+|..++.+++.++....   ........+|.+.+++.++++.+|..|+.+|+.++...+.   ......++|.+..+
T Consensus       144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l  223 (530)
T 1wa5_B          144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  223 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH
Confidence            79999999999999886321   1112245799999999999999999999999999865322   12334588999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hHHhhHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPA  151 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~llp~  151 (337)
                      ++++++.+|..++.+|++++...+   .......++|.+..++.+.++.+|..++.++..++.....  + .....++|.
T Consensus       224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~  303 (530)
T 1wa5_B          224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR  303 (530)
T ss_dssp             GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred             hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHH
Confidence            999999999999999999986431   2334468899999999999999999999999999864221  1 222468899


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHh
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQ  224 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~  224 (337)
                      +..++.+.++.+|..++..++.++...+.   ......++|.+..++.++++.+|..|+.+|+.++... .+.    +..
T Consensus       304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~  382 (530)
T 1wa5_B          304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN-TEQIQAVIDA  382 (530)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHT
T ss_pred             HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHC
Confidence            99999999999999999999998754321   1123468899999999999999999999999987522 221    234


Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      .++|.+..++.++++.+|..++.+++.++...+.  +    .....++|.+..++.++++.||..++.+|..+.......
T Consensus       383 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~  462 (530)
T 1wa5_B          383 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD  462 (530)
T ss_dssp             TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            6889999999999999999999999999765433  2    223458999999999999999999999999998754431


Q ss_pred             ---------HH-----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          299 ---------VV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       299 ---------~~-----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                               .+     ....++.|..+..+++.+|+..|..+|..+-.
T Consensus       463 ~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~  510 (530)
T 1wa5_B          463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG  510 (530)
T ss_dssp             HHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred             hhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence                     11     12257788889999999999999998877653

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=1.4e-21  Score=176.79  Aligned_cols=333  Identities=15%  Similarity=0.104  Sum_probs=260.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPE---LAIQHILPC   73 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~   73 (337)
                      ++++.+|..++.++..++.......    ....++|.+.+++.+++ +.+|..|+.+|+.++...+..   ......+|.
T Consensus        85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~  164 (528)
T 4b8j_A           85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI  164 (528)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHH
Confidence            4678999999999999876543221    23468999999999887 999999999999998743221   223358899


Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhh-cCCChhHHHHHHHhHHHhHhhhc--hhhHHhh
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIG--IDLLSQS  147 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~  147 (337)
                      +..++.++++.+|..++.+|++++...+.   .......+|.+..++ .+.++.++..++.++..++....  .......
T Consensus       165 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  244 (528)
T 4b8j_A          165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP  244 (528)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence            99999999999999999999999853221   112245789999999 67789999999999999987632  2233467


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW  221 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~  221 (337)
                      ++|.+..++.+.++.++..++.++..++......   .....++|.+..++.++++.+|..|+.+|+.++...+.   ..
T Consensus       245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~  324 (528)
T 4b8j_A          245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI  324 (528)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8999999999999999999999999988543221   12235789999999999999999999999999753211   11


Q ss_pred             HHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          222 AMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ....++|.+..++.++ ++.+|..++++++.++.....   ......++|.+..++.+.++.+|..|+.+|+.++..-.+
T Consensus       325 ~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~  404 (528)
T 4b8j_A          325 IDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH  404 (528)
T ss_dssp             HTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH
Confidence            2345789999999998 899999999999999863221   122346889999999999999999999999999876333


Q ss_pred             H----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          298 S----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       298 ~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      +    .....+++.|..++.+++++++..+..+|..+....
T Consensus       405 ~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          405 DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            2    123468889999999999999999999999997653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.87  E-value=3.8e-20  Score=153.53  Aligned_cols=254  Identities=20%  Similarity=0.138  Sum_probs=202.5

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhh
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL  109 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  109 (337)
                      .-++.+.+.+.|+++.+|..++..|+.++.        ...++.+.++++|+++.+|..++.+++.++....   ....+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~---~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---CEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---THHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---cchHH
Confidence            347888899999999999999999998863        3466778889999999999999999999874211   23346


Q ss_pred             HHHHH-HhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          110 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       110 ~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      ++.+. .+++|+++.||..++.+++.+....+  ...+.++|.+...++|+++.+|..++..++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            66666 35789999999999999999875422  1225678889999999999999999999887653        2367


Q ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679          189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV  268 (337)
Q Consensus       189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  268 (337)
                      |.+..+++|+++.||..++.+++.+..    .  .+..++.+...+.|+++.+|..++.+++.+.        ....+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKY----D--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC----C--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhcc----C--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence            888889999999999999999988631    1  2357788889999999999999999999976        2467788


Q ss_pred             HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCC-CCccHHHHHHHHHH
Q 019679          269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED-PDVDVRFFATQALQ  328 (337)
Q Consensus       269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~  328 (337)
                      +...+.|+.  ||..++.+|+.++.        ...+|.|..++++ ++++++..+.+++.
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            888888864  99999999999865        3677888887654 57778888877764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=7.7e-20  Score=165.35  Aligned_cols=304  Identities=14%  Similarity=0.128  Sum_probs=240.0

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---HH-HHHHhhhHhhHHhcCCCc-HHHHHHHHHHHHhcCcccCh--
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---PE-LAIQHILPCVKELSSDSS-QHVRSALATVIMGMAPILGK--  102 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~~-~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~--  102 (337)
                      .-+|.+.+.+.++++.+|..|+..|..++....   .. .....++|.+.+++++++ +.+|..++.+|++++.....  
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            458889999999999999999999999976543   12 344568999999998876 99999999999999873221  


Q ss_pred             -hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhh
Q 019679          103 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       103 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~  177 (337)
                       .......+|.+..++.++++.+|..|+.+|+.++.....   .......+|.+..++ .+.++.++..++.++..++..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence             112246899999999999999999999999999864221   112235788888888 678899999999999999876


Q ss_pred             hC--hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679          178 LG--VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLL  252 (337)
Q Consensus       178 ~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l  252 (337)
                      ..  .......++|.+..++.++++.++..++.+|+.++...+..   .....++|.+..++.++++.+|..++.+++.+
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            42  22244568999999999999999999999999987432111   12336889999999999999999999999999


Q ss_pred             ccccCh---HHHHhhHHHHHHhhccCC-ChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679          253 APVMGS---EITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQ  325 (337)
Q Consensus       253 ~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~  325 (337)
                      +.....   ......++|.+..++.++ ++.+|..|+.+|+.++.....   ..+...++|.|..++.+.++++|..|+.
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            864322   122346789999999998 899999999999999864322   1234578899999888889999999999


Q ss_pred             HHHHHHHh
Q 019679          326 ALQSKDQV  333 (337)
Q Consensus       326 al~~l~~~  333 (337)
                      +|+.++..
T Consensus       394 aL~nl~~~  401 (528)
T 4b8j_A          394 AISNATSG  401 (528)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99999875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.85  E-value=1e-19  Score=150.92  Aligned_cols=244  Identities=16%  Similarity=0.087  Sum_probs=194.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhH-HhcCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK-ELSSD   80 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~-~l~~d   80 (337)
                      |+++.||..++.+|+.+.        .+..+|.+.+++.|+++.+|..++.+|+.++..  ... ...+++.+. .+.+|
T Consensus        34 ~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~-~~~l~~~L~~~~~~d  102 (280)
T 1oyz_A           34 DHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKC-EDNVFNILNNMALND  102 (280)
T ss_dssp             CSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTT-HHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--ccc-chHHHHHHHHHHhcC
Confidence            789999999999999876        256899999999999999999999999887632  111 234566665 46789


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~  160 (337)
                      +++.||..++.+++.++...+.  ....+++.+..++.|+++.||..++.+++.+..        +..+|.+.+.++|++
T Consensus       103 ~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~~L~~~l~d~~  172 (280)
T 1oyz_A          103 KSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPN  172 (280)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCC
Confidence            9999999999999998743221  235678999999999999999999999998754        346788888999999


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      +.+|..++..++.+...      .+..++.+...++|+++.||..++.+|+.+.    .    +..+|.+...++|++  
T Consensus       173 ~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L~~~l~d~~--  236 (280)
T 1oyz_A          173 GDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVLCDELKKNT--  236 (280)
T ss_dssp             HHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHHHHHHTSSS--
T ss_pred             HHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHHHHHhcCcc--
Confidence            99999999999886311      2457888999999999999999999998764    2    347788888888866  


Q ss_pred             HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC-CChhHHHHHHHHHHH
Q 019679          241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQS  290 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~  290 (337)
                      +|..++.+++.+..        ...+|.+..++.+ ++++++..++..+..
T Consensus       237 vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          237 VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            88899999999764        3678888888865 457788888777653

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.85  E-value=3.5e-19  Score=162.61  Aligned_cols=314  Identities=15%  Similarity=0.123  Sum_probs=158.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ++..+|+.+.-++..++..-+ +. ...+.+.+.+.++|+|+.+|..|+.+++.+.    ...+...+.|.+.+++.|++
T Consensus        61 ~~~~~Krl~yl~l~~~~~~~~-e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~  134 (591)
T 2vgl_B           61 DNLELKKLVYLYLMNYAKSQP-DM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDED  134 (591)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSH-HH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSC
T ss_pred             CCHHHHHHHHHHHHHHcccCc-hH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCC
Confidence            344455555444444443211 00 0112344444444555555555544444332    11222344444444445555


Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc----------------------
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------------  140 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------------  140 (337)
                      +.||+.|+.+++++....++......+++.+.+++.|+++.|+.+|+.++..+...-+                      
T Consensus       135 ~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~  214 (591)
T 2vgl_B          135 PYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC  214 (591)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC
Confidence            5555555555554444332222223444555555555555555555555444443211                      


Q ss_pred             ------------------hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh--Chhh---HHHHHHHHHHHHccc
Q 019679          141 ------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGF---FDDKLGALCMQWLKD  197 (337)
Q Consensus       141 ------------------~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d  197 (337)
                                        .+.....+++.+...+++.++.|+..++.++..+....  +++.   ....+.+.+..++ +
T Consensus       215 ~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~  293 (591)
T 2vgl_B          215 TEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S  293 (591)
T ss_dssp             CHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T
T ss_pred             CchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c
Confidence                              01112456677777788889999999999988886543  2222   2345566666555 4


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCC
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV  277 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  277 (337)
                      +++++|..++.+++.+....+ +.+.. .+..+....+|+ +.+|..++..+..++..-+    ...+++.+..++.+.+
T Consensus       294 ~d~~vr~~aL~~l~~i~~~~p-~~~~~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d  366 (591)
T 2vgl_B          294 GEPEVQYVALRNINLIVQKRP-EILKQ-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVD  366 (591)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCC-STTTT-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSC
T ss_pred             CCccHHHHHHHHHHHHHHhCh-HHHHH-HHHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCC
Confidence            788999999999999887532 21111 111111111222 5666666666655543222    2245555555666666


Q ss_pred             hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          278 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       278 ~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      .++|..++++++.++..+++.  ...+++.|..++.+....++..+..++..+.+
T Consensus       367 ~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~  419 (591)
T 2vgl_B          367 VDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR  419 (591)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            666666666666666555422  23445555555555555555555555555443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.83  E-value=1.4e-17  Score=151.99  Aligned_cols=319  Identities=13%  Similarity=0.133  Sum_probs=219.7

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +...|..++..+-.+ ...|.+.  +.+++.+.+++++++..+|+.+...+..+++.. ++. ...+.+.+.+.++|+++
T Consensus        26 ~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~-~~l~~n~l~kdL~~~n~  100 (591)
T 2vgl_B           26 KKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM-AIMAVNSFVKDCEDPNP  100 (591)
T ss_dssp             CHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH-HHTTHHHHGGGSSSSSH
T ss_pred             CHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH-HHHHHHHHHHHcCCCCH
Confidence            444555555444432 3456654  567888999999999999999999998887752 332 23456778888999999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-hhHHHHHHHHhcCCchH
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-QSLLPAIVELAEDRHWR  162 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~llp~l~~~~~d~~~~  162 (337)
                      .+|..|+.+++.+..    ....+.++|.+.+++.|+++.||+.|+.++..+.+. +++.+. ..++|.+.++++|+++.
T Consensus       101 ~ir~~AL~~L~~i~~----~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~  175 (591)
T 2vgl_B          101 LIRALAVRTMGCIRV----DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPM  175 (591)
T ss_dssp             HHHHHHHHHHHTCCS----GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHH
T ss_pred             HHHHHHHHHHHcCCh----HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChh
Confidence            999999999999873    335577889999999999999999999999999884 344332 36889999999999999


Q ss_pred             HHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679          163 VRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY  239 (337)
Q Consensus       163 vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  239 (337)
                      |+..++..+..++..-+..   ...+..++.+++.+.+.+++.+...++.++.+...  .+.....+++.+..++++.++
T Consensus       176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~  253 (591)
T 2vgl_B          176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANS  253 (591)
T ss_dssp             HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTT
T ss_pred             HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCCh
Confidence            9999999999988754321   12234455555556666666666666655443311  111234566777777777777


Q ss_pred             HHHHHHHHHHHHhcccc--ChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-----------------
Q 019679          240 LYRMTILQAISLLAPVM--GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-----------------  297 (337)
Q Consensus       240 ~vR~~~~~~l~~l~~~~--~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-----------------  297 (337)
                      .++..++.++..+....  +.+   .....+.+.+..++ ++++++|..++++++.+....+.                 
T Consensus       254 ~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~  332 (591)
T 2vgl_B          254 AVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPI  332 (591)
T ss_dssp             HHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCH
T ss_pred             HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChH
Confidence            77777777777766433  111   11234444444443 35567777777777666542110                 


Q ss_pred             ---------------HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          298 ---------------SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       298 ---------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                                     +...+.+++.|..+..|.++++|..++++++.++..+.
T Consensus       333 ~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~  385 (591)
T 2vgl_B          333 YVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE  385 (591)
T ss_dssp             HHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence                           00123466677777888899999999999999987653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.82  E-value=4.7e-18  Score=152.54  Aligned_cols=332  Identities=12%  Similarity=0.069  Sum_probs=247.0

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhh
Q 019679            3 KSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCV   74 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l   74 (337)
                      .+..++..+++.+..+...-..    .....-++|.|.+++.+ +++.++..|+.+|+.++...+..   ......+|.+
T Consensus        69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~L  148 (510)
T 3ul1_B           69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF  148 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            5677888888888876532211    11223479999999964 56899999999999998753332   2233478999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCCh-----hHHHHHHHhHHHhHhhhch---hh
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIGI---DL  143 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~---~~  143 (337)
                      .++++++++.||..++.+|++++.....   .......++.+..++.+.+.     .+...++.++..+...-.+   -.
T Consensus       149 v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  228 (510)
T 3ul1_B          149 ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  228 (510)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHH
Confidence            9999999999999999999999753221   12234678899999876543     3566777777777654321   12


Q ss_pred             HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh-
Q 019679          144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-  219 (337)
Q Consensus       144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-  219 (337)
                      ....++|.+..++.+.+..++..++.++..++......   .....++|.+..++.+++..++..++.+++.++..-+. 
T Consensus       229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~  308 (510)
T 3ul1_B          229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  308 (510)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence            33678999999999999999999999999887643211   11234678899999999999999999999998643211 


Q ss_pred             --HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          220 --DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       220 --~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                        .......++.+..++.+++..+|..++++++.++.....   ......++|.+..++.+.+..+|..|+.+|..++..
T Consensus       309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence              112345677888889999999999999999999754322   123446899999999999999999999999999865


Q ss_pred             hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      -..+    ....-+++.|..+++.++++++..+.++|..+.+..
T Consensus       389 ~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          389 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             CCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            4433    223457888999999999999999999999887643

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.82  E-value=1.4e-17  Score=150.29  Aligned_cols=332  Identities=12%  Similarity=0.071  Sum_probs=247.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhh
Q 019679            3 KSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCV   74 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l   74 (337)
                      ++..++..++..+..+...-..    ......++|.+.+++. ++++.++..|+.+|..++...+..   ......+|.+
T Consensus        88 ~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L  167 (529)
T 3tpo_A           88 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF  167 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            4566777777777765432211    1123458999999996 456999999999999998764332   2334478999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCCh-----hHHHHHHHhHHHhHhhhch---hh
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIGI---DL  143 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~---~~  143 (337)
                      ..+++++++.+|..++.+|++++....   ........++.+..++.+.+.     .+...++.++..+...-.+   -.
T Consensus       168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  247 (529)
T 3tpo_A          168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  247 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            999999999999999999999975322   112234678899999986543     3566777777777654321   12


Q ss_pred             HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh-
Q 019679          144 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-  219 (337)
Q Consensus       144 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-  219 (337)
                      ....++|.+..++.+.+..++..++.++..++......   .....++|.+..++.++++.++..++.+++.++..-+. 
T Consensus       248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  327 (529)
T 3tpo_A          248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  327 (529)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHH
Confidence            33678999999999999999999999999887643211   11234678899999999999999999999998642211 


Q ss_pred             --HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          220 --DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       220 --~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                        .......++.+..++.+++..+|..++++++.++.....   ......++|.+..++.+.+..+|..|+.+|..++..
T Consensus       328 ~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          328 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence              112345778899999999999999999999999754321   123446899999999999999999999999999865


Q ss_pred             hcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          295 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       295 ~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      -..+    ....-+++.|..++..++++++..+..+|..+.+..
T Consensus       408 ~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          408 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            4433    223457888999999999999999999999987643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.81  E-value=9.4e-18  Score=151.73  Aligned_cols=329  Identities=14%  Similarity=0.070  Sum_probs=232.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------   62 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~----------------   62 (337)
                      ++++.+|..++.++..++...+...   .....+|.+.+++.++++.+|..++.+|..++...+                
T Consensus       112 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~  191 (529)
T 1jdh_A          112 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV  191 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            4678899999999999987643321   124689999999999999999988777776653110                


Q ss_pred             -----------------------------HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679           63 -----------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  113 (337)
Q Consensus        63 -----------------------------~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  113 (337)
                                                   ........+|.+..+++++++.++..++.++.+++...+.......++|.+
T Consensus       192 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L  271 (529)
T 1jdh_A          192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL  271 (529)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred             HHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHH
Confidence                                         000112356777778888899999999999999887554433445789999


Q ss_pred             HHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcC--CchHHHHHHHHHhhHhHhhhCh------hh
Q 019679          114 LSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GF  182 (337)
Q Consensus       114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~------~~  182 (337)
                      .+++.+.++++|..++.++..++..-.   ........+|.+.+++.+  .++.+|..++..+..++...+.      ..
T Consensus       272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i  351 (529)
T 1jdh_A          272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV  351 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            999999999999999999999976421   111223467778877754  3478999999999998754322      11


Q ss_pred             HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHH--------
Q 019679          183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAISL--------  251 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~--------  251 (337)
                      .....+|.+..++.+++ +.+|..++.+++.++..-..  ......++|.+.+.+.+.++.+|..++++++.        
T Consensus       352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~  431 (529)
T 1jdh_A          352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  431 (529)
T ss_dssp             HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBC
T ss_pred             HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcccc
Confidence            22346788999999876 69999999999998742211  11234678999999888777777765554443        


Q ss_pred             --------------hccccCh--HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--HHHHHHhhhHHHHhhhC
Q 019679          252 --------------LAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSE  313 (337)
Q Consensus       252 --------------l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~  313 (337)
                                    ++.....  .......+|.+..++.|+++.||..++.+|..++..-.  ........++.|..+.+
T Consensus       432 ~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~  511 (529)
T 1jdh_A          432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  511 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhc
Confidence                          3322110  11233567999999999999999999999999875311  11223457788999999


Q ss_pred             CCCccHHHHHHHHHHHH
Q 019679          314 DPDVDVRFFATQALQSK  330 (337)
Q Consensus       314 d~~~~vr~~a~~al~~l  330 (337)
                      +++++||..|..+|..+
T Consensus       512 ~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          512 SRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.80  E-value=1.1e-16  Score=147.65  Aligned_cols=330  Identities=12%  Similarity=0.061  Sum_probs=249.5

Q ss_pred             CChHHHHHHHHHHHHHHHHhC--C--CCc----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH-HHH--Hh
Q 019679            3 KSWRVRYMVANQLYELCEAVG--P--EPT----RSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-LAI--QH   69 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~--~--~~~----~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~-~~~--~~   69 (337)
                      ++..+|..++.+|..++...+  +  ...    ...++|.+.+++.++  ++++|+.++++|..+...-... .+.  ..
T Consensus       342 ~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g  421 (810)
T 3now_A          342 KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA  421 (810)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred             CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccc
Confidence            456788888888888875433  1  111    236799999999888  8999999999999997643322 222  34


Q ss_pred             hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC-----------------------------------hhhHHhhhHHHHH
Q 019679           70 ILPCVKELSSDSSQHVRSALATVIMGMAPILG-----------------------------------KDATIEQLLPIFL  114 (337)
Q Consensus        70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~~~~l~~~l~  114 (337)
                      ++|.+..+++.+++.++..++.+|++++....                                   +.......+|.+.
T Consensus       422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV  501 (810)
T 3now_A          422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC  501 (810)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence            78888888888889999999999999987321                                   1112235799999


Q ss_pred             HhhcCCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhH-----HHHH
Q 019679          115 SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKL  187 (337)
Q Consensus       115 ~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l  187 (337)
                      ++++..++.+|..|+.++..++..-..  .......+|.|..++.+.+...|..++.++..++....++..     ....
T Consensus       502 ~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~a  581 (810)
T 3now_A          502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV  581 (810)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcH
Confidence            999999999999999999999854221  123345889999999988899999999999998866544321     1247


Q ss_pred             HHHHHHHcccc-chHHHHHHHHHHHHHHHHhC---hHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh-HHHH
Q 019679          188 GALCMQWLKDK-VYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITC  262 (337)
Q Consensus       188 ~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~-~~~~  262 (337)
                      +|.+.++|..+ +...+..|+.+|..++..-+   ...+....+|.+.+++.+.+..+|..|+++++.++..-.. ..+.
T Consensus       582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v  661 (810)
T 3now_A          582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE  661 (810)
T ss_dssp             HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            88999999754 44556678889988875321   1122346789999999999999999999999999863221 1122


Q ss_pred             --hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--HHHH--HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          263 --SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       263 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                        ...++.+..++..++..+|.+|+.+|+.++.....  +.+.  ...+|.|..++.+.+.++|..|+.++.++..
T Consensus       662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence              35789999999999999999999999999874322  2232  4688899999999999999999999999876

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.80  E-value=3.4e-18  Score=138.54  Aligned_cols=195  Identities=15%  Similarity=0.155  Sum_probs=161.8

Q ss_pred             CCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcc
Q 019679           23 GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPI   99 (337)
Q Consensus        23 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~   99 (337)
                      ++......+-|.+.+.++|.+|..|..++..|..+++..+.  ......+++.+.+.++ |++..||..++.+++.++..
T Consensus         8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~   87 (242)
T 2qk2_A            8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG   87 (242)
T ss_dssp             SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            34334455666788899999999999999999999887432  1112457888888885 99999999999999999987


Q ss_pred             cChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          100 LGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       100 ~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      +++..  ....++|.+++.+.|+++.||.++..++..++...+.    +.++|.+...+++++|.+|..++.+++.+...
T Consensus        88 l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~  163 (242)
T 2qk2_A           88 LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTR  163 (242)
T ss_dssp             HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            77643  3467999999999999999999999999999887653    56788888999999999999999999998776


Q ss_pred             hChh----hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679          178 LGVG----FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  221 (337)
Q Consensus       178 ~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  221 (337)
                      .+++    .+.+.++|.+..+++|+++.||.+|..+++.+...+|.+.
T Consensus       164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~  211 (242)
T 2qk2_A          164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA  211 (242)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence            6533    3567899999999999999999999999999999998653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.80  E-value=1.5e-17  Score=150.43  Aligned_cols=329  Identities=12%  Similarity=0.036  Sum_probs=232.0

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--H-HHHhhhHhhHHh
Q 019679            3 KSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--L-AIQHILPCVKEL   77 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~-~~~~ll~~l~~l   77 (337)
                      ++|.+|+.++.++..++..-..  .......+|.+.+++.++++.++..++.+|..++...+..  . .....+|.+.++
T Consensus        72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  151 (529)
T 1jdh_A           72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL  151 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence            4789999999999998753211  1112357999999999999999999999999998764322  2 235688999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccC---------------------------------------------hhhHHhhhHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILG---------------------------------------------KDATIEQLLPI  112 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~---------------------------------------------~~~~~~~l~~~  112 (337)
                      +.++++.+|..++.++..++....                                             ........+|.
T Consensus       152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~  231 (529)
T 1jdh_A          152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA  231 (529)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence            999999999988888876653110                                             00011245677


Q ss_pred             HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--h-hhHHHHHHH
Q 019679          113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-GFFDDKLGA  189 (337)
Q Consensus       113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~~~~~~l~~  189 (337)
                      +.+++.+.++.++..++..+..++...+.......++|.+.+++.++++.+|..++..+..++..-.  . .......+|
T Consensus       232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~  311 (529)
T 1jdh_A          232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE  311 (529)
T ss_dssp             HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence            7777888888888888888888876544333335688999999999999999999999999876421  1 112234677


Q ss_pred             HHHHHccc--cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhhcCcc-hHHHHHHHHHHHHhccccCh--
Q 019679          190 LCMQWLKD--KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS--  258 (337)
Q Consensus       190 ~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~~-~~vR~~~~~~l~~l~~~~~~--  258 (337)
                      .+.+++.+  +++.++..++.+|+.++...+.      .......+|.+..++.+++ +.+|..++++++.++..-..  
T Consensus       312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~  391 (529)
T 1jdh_A          312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA  391 (529)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH
Confidence            88888865  3479999999999998643221      1123357899999999876 79999999999999853221  


Q ss_pred             HHHHhhHHHHHHhhccCCChhHHHHHHHHHH----------------------HHhhhhcHH--HHHHhhhHHHHhhhCC
Q 019679          259 EITCSQLLPVVINASKDRVPNIKFNVAKVLQ----------------------SLIPIVDQS--VVEKSIRPCLVELSED  314 (337)
Q Consensus       259 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~----------------------~i~~~~~~~--~~~~~i~~~l~~l~~d  314 (337)
                      ......++|.+..++.+.++.+|..++.+++                      .++......  ......+|.|..++.|
T Consensus       392 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~  471 (529)
T 1jdh_A          392 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS  471 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGC
T ss_pred             HHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcC
Confidence            1223468899999998888888876554444                      343321111  2234577889999999


Q ss_pred             CCccHHHHHHHHHHHHH
Q 019679          315 PDVDVRFFATQALQSKD  331 (337)
Q Consensus       315 ~~~~vr~~a~~al~~l~  331 (337)
                      ++++||..+++++..+.
T Consensus       472 ~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          472 PIENIQRVAAGVLCELA  488 (529)
T ss_dssp             SCHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHh
Confidence            99999999999998875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.80  E-value=4.6e-17  Score=150.48  Aligned_cols=331  Identities=14%  Similarity=0.073  Sum_probs=237.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------   63 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---------------   63 (337)
                      ++++.+|..++.+|..++.......   .....+|.+.+++.++++.++..++.+|..++...+.               
T Consensus       109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv  188 (644)
T 2z6h_A          109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV  188 (644)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHH
Confidence            4578899999999999987643221   1246799999999998888888888777776631100               


Q ss_pred             ------------------------------HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679           64 ------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  113 (337)
Q Consensus        64 ------------------------------~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  113 (337)
                                                    .......++.+.+++++++..++..++.++.+++...+.......++|.+
T Consensus       189 ~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~L  268 (644)
T 2z6h_A          189 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL  268 (644)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHH
Confidence                                          00111246677777888888999999999999886554433345789999


Q ss_pred             HHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHHHHHHHHhcCC--chHHHHHHHHHhhHhHhhhChh------h
Q 019679          114 LSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------F  182 (337)
Q Consensus       114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~------~  182 (337)
                      .+++.+.++++|..++.++..+...-.   ........+|.+..++.+.  .+.+|..++..+..++...+..      .
T Consensus       269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v  348 (644)
T 2z6h_A          269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV  348 (644)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            999999999999999999999876421   1122234678888877653  3789999999999997543321      1


Q ss_pred             HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcch--------------------
Q 019679          183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY--------------------  239 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~--------------------  239 (337)
                      .....+|.+.++|.+++ +.+|+.++.+++.++..-..  ......++|.+.+++.+.++                    
T Consensus       349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~  428 (644)
T 2z6h_A          349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  428 (644)
T ss_dssp             HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred             HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence            22357889999999875 79999999999988742111  11234577888888776433                    


Q ss_pred             --HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhC
Q 019679          240 --LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE  313 (337)
Q Consensus       240 --~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~  313 (337)
                        .++..++.++..++......  ......+|.+..++.+.++.+|..++.+|..++..-...  ......++.|..++.
T Consensus       429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~  508 (644)
T 2z6h_A          429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  508 (644)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHc
Confidence              45556677777666432211  123457899999999999999999999999987542111  112346788889999


Q ss_pred             CCCccHHHHHHHHHHHHHH
Q 019679          314 DPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       314 d~~~~vr~~a~~al~~l~~  332 (337)
                      +++++||..|+++|..++.
T Consensus       509 ~~~~~vr~~A~~aL~~l~~  527 (644)
T 2z6h_A          509 SRNEGVATYAAAVLFRMSE  527 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999998875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=1.1e-17  Score=135.52  Aligned_cols=188  Identities=13%  Similarity=0.121  Sum_probs=145.2

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhChh--
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG--  181 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~--  181 (337)
                      .+-+.+.+.+.|+++..|.+++..+..+++..+.   ..+ ..+++.+...+. |++..+|..++.+++.++..+|..  
T Consensus        15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence            3344466666677777777777777776665221   112 456677777774 777778888888887777777654  


Q ss_pred             hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---
Q 019679          182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---  258 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---  258 (337)
                      .+.+.++|.++..++|++..||+++..++..+....+    .+.++|.+...+++++|++|..++.+++.+....+.   
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            3556789999999999999999999999999887654    346888999999999999999999999997655542   


Q ss_pred             -HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH
Q 019679          259 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV  300 (337)
Q Consensus       259 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~  300 (337)
                       ..+.+.++|.+..++.|++++||.+|..+++.++..+|.+.+
T Consensus       170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~  212 (242)
T 2qk2_A          170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV  212 (242)
T ss_dssp             CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence             235668999999999999999999999999999999997543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.79  E-value=1.1e-17  Score=132.57  Aligned_cols=187  Identities=20%  Similarity=0.236  Sum_probs=123.0

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      +..++.+.+.+.|+++.+|..++..|+.+..        ...+|.+.++++|+++.||..++.+++.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            5567778888888888888888888877654        2455666677778888888888888877763        34


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      .++.+.+++.|+++.||..++.+++.+..        +..+|.+.++++|+++.+|..++..++.+..        +..+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  145 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  145 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence            55777777788888888888888776643        2345666666677777777777766666532        1244


Q ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccc
Q 019679          189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  255 (337)
Q Consensus       189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~  255 (337)
                      +.+..+++|+++.||..++.+|+.+.    .    +..++.+..+++|+++.+|..+..+++.+...
T Consensus       146 ~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          146 EPLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            55666666666777777766666542    1    23455555566666666666666666665443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.79  E-value=1.2e-16  Score=144.30  Aligned_cols=329  Identities=11%  Similarity=0.113  Sum_probs=244.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~   75 (337)
                      +.++.++..++.+|..++..-..   .....-.+|.+.+++.++++.+|..|+.+|+.++...+.   .......++.+.
T Consensus       131 ~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll  210 (529)
T 3tpo_A          131 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL  210 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence            45688999999999999853211   112234799999999999999999999999999864222   123344677777


Q ss_pred             HhcCCCc-----HHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hH
Q 019679           76 ELSSDSS-----QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LL  144 (337)
Q Consensus        76 ~l~~d~~-----~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~  144 (337)
                      .++.+++     ..+...++.++..++....   .......++|.+.+++.+.+++++..++.++..+......  . ..
T Consensus       211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~  290 (529)
T 3tpo_A          211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV  290 (529)
T ss_dssp             HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            7776543     3456777888887765322   2223467899999999999999999999999998864321  1 12


Q ss_pred             HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--
Q 019679          145 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--  219 (337)
Q Consensus       145 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  219 (337)
                      ...++|.+.+++.++++.++..++.+++.++..-..   .......++.+..++.++++.+|..|+.+|+.++..-..  
T Consensus       291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~  370 (529)
T 3tpo_A          291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI  370 (529)
T ss_dssp             TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHH
Confidence            345889999999999999999999999998753221   112234678889999999999999999999998753211  


Q ss_pred             -HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          220 -DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       220 -~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                       ......++|.+..++.+.+..+|..++++++.++.....+.    .....++.|..+|..+++.++..++.+|..+.+.
T Consensus       371 ~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          371 QQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence             11234689999999999999999999999999876544432    2345789999999999999999999999888643


Q ss_pred             h---cH-HHHHH-----hhhHHHHhhhCCCCccHHHHHHHHHHHH
Q 019679          295 V---DQ-SVVEK-----SIRPCLVELSEDPDVDVRFFATQALQSK  330 (337)
Q Consensus       295 ~---~~-~~~~~-----~i~~~l~~l~~d~~~~vr~~a~~al~~l  330 (337)
                      .   +. +.+..     -.+..+..|...++.+|+..|.+.|...
T Consensus       451 ~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          451 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  495 (529)
T ss_dssp             HHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred             hHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            2   21 22211     2466778888888999999988887654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.79  E-value=1.3e-16  Score=143.25  Aligned_cols=303  Identities=12%  Similarity=0.103  Sum_probs=228.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--C-HHH-HHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh--
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--N-PEL-AIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD--  103 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~--~-~~~-~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~--  103 (337)
                      -++.+.+.+.+++++.+..|+..+.++.+.-  + .+. +..-++|.|.++++ +.++.++..|+.+|.+++..-.+.  
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            4788889999999999999999999887532  2 233 33448899999886 456899999999999997533211  


Q ss_pred             -hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCch-----HHHHHHHHHhhHh
Q 019679          104 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHW-----RVRLAIIEYIPLL  174 (337)
Q Consensus       104 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~-----~vr~~~~~~l~~l  174 (337)
                       ......+|.+.+++++++++||..|+.+|+.++.....   .......++.+..++.+.+.     .+...++..+..+
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence             12346799999999999999999999999999864221   12234567888888765442     3455666677777


Q ss_pred             HhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhcCcchHHHHHHHHH
Q 019679          175 ASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMINNPHYLYRMTILQA  248 (337)
Q Consensus       175 ~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~~~~~~vR~~~~~~  248 (337)
                      +.....   ......++|.+..++.++++.++..++.+|..++..-..  + .....++|.+.+++.+++..++..++.+
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            654322   123457899999999999999999999999998753211  1 1234578999999999999999999999


Q ss_pred             HHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHH
Q 019679          249 ISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFF  322 (337)
Q Consensus       249 l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~  322 (337)
                      ++.++.....   .......++.+..++.++++.+|..++.+|+.++..-...   .....++|.|..++.+.+.++|..
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  377 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE  377 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHH
Confidence            9998754322   1223457788889999999999999999999997643322   334568899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 019679          323 ATQALQSKDQV  333 (337)
Q Consensus       323 a~~al~~l~~~  333 (337)
                      |+++|..++..
T Consensus       378 Aa~aL~Nl~~~  388 (510)
T 3ul1_B          378 AAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHcc
Confidence            99999998753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.78  E-value=2.6e-16  Score=145.26  Aligned_cols=330  Identities=12%  Similarity=0.080  Sum_probs=247.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---H-H----HHHHhhhHh
Q 019679            3 KSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---P-E----LAIQHILPC   73 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~---~-~----~~~~~ll~~   73 (337)
                      ++..++..++.+++..+..-.. +...+.-+|.+..++.++++.+|..|+.+|.+++....   + .    .-...+++.
T Consensus       302 ~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~  381 (810)
T 3now_A          302 DDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA  381 (810)
T ss_dssp             SCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHH
Confidence            4677888999999886643111 11122234999999998899999999999999985321   1 1    123567888


Q ss_pred             hHHhcCCC--cHHHHHHHHHHHHhcCcccChhh--HH-hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--------
Q 019679           74 VKELSSDS--SQHVRSALATVIMGMAPILGKDA--TI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------  140 (337)
Q Consensus        74 l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------  140 (337)
                      +.+++.++  ++.+|+.++++|.+++.......  .. ...+|.+.++++..++.+...++..++.+.....        
T Consensus       382 l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l  461 (810)
T 3now_A          382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEM  461 (810)
T ss_dssp             HHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSC
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHH
Confidence            88888777  88999999999999986433211  11 4689999999999999999999999999987431        


Q ss_pred             ---------------------------hhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHH
Q 019679          141 ---------------------------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALC  191 (337)
Q Consensus       141 ---------------------------~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l  191 (337)
                                                 ...+....+|.+..++.++++.+|..++.++..++..-..  .....-.+|.+
T Consensus       462 ~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~L  541 (810)
T 3now_A          462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKAL  541 (810)
T ss_dssp             GGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence                                       0011234789999999999999999999999999854211  11233478999


Q ss_pred             HHHccccchHHHHHHHHHHHHHHHHhChHHH-----HhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccC---hHHHH
Q 019679          192 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMG---SEITC  262 (337)
Q Consensus       192 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~---~~~~~  262 (337)
                      +.++.+.+..+|+.|+.+|+.++....++..     ....+|.+.+++.+. +...+..++.++..++..-.   .....
T Consensus       542 v~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~  621 (810)
T 3now_A          542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK  621 (810)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999999999999876554432     134789999998754 44556678999999986532   12234


Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHH--HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVE--KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      ...+|.+..++.++++.||.+|+.+++.++..-... .+.  ...++.|..++...+.++|..|+.+|..+..
T Consensus       622 aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS  694 (810)
T ss_dssp             TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999998643221 222  2467888889998899999999999999986

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.78  E-value=5.2e-17  Score=152.62  Aligned_cols=331  Identities=11%  Similarity=0.052  Sum_probs=241.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC--c-ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP--T-RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~--~-~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~   75 (337)
                      ++++.||..++.+++.++.......  . .+..++.+.+.+.+ +++.+|..|+.+|..++..-...  ......+|.+.
T Consensus       161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv  240 (780)
T 2z6g_A          161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV  240 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHH
Confidence            4678999999999999986432111  1 13578888888864 48999999999999976542211  22345789999


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccChh--h-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhHHhhHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGKD--A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLL  149 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll  149 (337)
                      ++++++++.+|..++.+|.+++......  . .....+|.+.+++.+.+..++..++.++..++....   ........+
T Consensus       241 ~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i  320 (780)
T 2z6g_A          241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP  320 (780)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCH
Confidence            9999999999999999999998653321  1 235789999999999999999999999887764211   111223467


Q ss_pred             HHHHHHhcCCchH-HHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          150 PAIVELAEDRHWR-VRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       150 p~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                      +.+..++.+.+.. .+..++..+..++.....  .......+|.+..++.+.+..++..++.++..++...........+
T Consensus       321 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~  400 (780)
T 2z6g_A          321 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL  400 (780)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhH
Confidence            7778887766554 445666777777643211  1122346789999999999999999999999998654332234568


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCC-C-hhHHHHHHHHHHHHhhhhcH----
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDR-V-PNIKFNVAKVLQSLIPIVDQ----  297 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~i~~~~~~----  297 (337)
                      +|.+..++.++++.+|..++.+++.++.....   .......++.+..++.+. . ..||..++.+|+.++...+.    
T Consensus       401 i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~  480 (780)
T 2z6g_A          401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMA  480 (780)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            99999999999999999999999999764321   112345788888888663 2 48999999999999754332    


Q ss_pred             --HHHHHhhhHHHHhhhCCCCc-cHHHHHHHHHHHHHH
Q 019679          298 --SVVEKSIRPCLVELSEDPDV-DVRFFATQALQSKDQ  332 (337)
Q Consensus       298 --~~~~~~i~~~l~~l~~d~~~-~vr~~a~~al~~l~~  332 (337)
                        .......+|.|..++.+++. .+|..|+.+|+.++.
T Consensus       481 ~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          481 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence              22335678888888877664 999999999999874

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.78  E-value=5.5e-17  Score=152.49  Aligned_cols=331  Identities=14%  Similarity=0.077  Sum_probs=234.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-----------------
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-----------------   61 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~-----------------   61 (337)
                      ++++.+|..++.+|..++..-....   .....+|.+.+++.+++..++..++.++..++...                 
T Consensus       245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv  324 (780)
T 2z6g_A          245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV  324 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence            4568899999999999987643311   12457889999998888888888877776554210                 


Q ss_pred             ---C-------------------------HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHH
Q 019679           62 ---N-------------------------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  113 (337)
Q Consensus        62 ---~-------------------------~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  113 (337)
                         .                         .......++|.+..++++.++.++..++.++.+++...........++|.+
T Consensus       325 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~L  404 (780)
T 2z6g_A          325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL  404 (780)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHH
Confidence               0                         000112346777778888889999999999999886554433346789999


Q ss_pred             HHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcC-Cc-hHHHHHHHHHhhHhHhhhChh------h
Q 019679          114 LSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RH-WRVRLAIIEYIPLLASQLGVG------F  182 (337)
Q Consensus       114 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~  182 (337)
                      .+++.+.++.+|..++.+|..+......   .......+|.+.+++.+ .+ ..+|..++.+++.++...+..      .
T Consensus       405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v  484 (780)
T 2z6g_A          405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV  484 (780)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            9999999999999999999999764211   11223467777777765 33 389999999999987543221      1


Q ss_pred             HHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhCh--HHHHhhHHHHHHHhhcCcch--------------------
Q 019679          183 FDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY--------------------  239 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~--------------------  239 (337)
                      .....+|.+.+++.+++ +.+|..++.+|+.++..-..  ......++|.+.+++.+.++                    
T Consensus       485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~  564 (780)
T 2z6g_A          485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR  564 (780)
T ss_dssp             HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCC
T ss_pred             HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccC
Confidence            22346788999998876 49999999999999742111  11134577888887765433                    


Q ss_pred             --HHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhC
Q 019679          240 --LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSE  313 (337)
Q Consensus       240 --~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~  313 (337)
                        .++..++.+++.++..-...  ......+|.|..++.+.++.||..++.+|..++..-...  ......++.|..+++
T Consensus       565 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~  644 (780)
T 2z6g_A          565 MEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH  644 (780)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred             hHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHc
Confidence              35666777777776321111  113457899999999999999999999999987432111  122347788889999


Q ss_pred             CCCccHHHHHHHHHHHHHH
Q 019679          314 DPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       314 d~~~~vr~~a~~al~~l~~  332 (337)
                      +++++||..|..+|..+..
T Consensus       645 ~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          645 SRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999875

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.78  E-value=3e-17  Score=130.14  Aligned_cols=185  Identities=16%  Similarity=0.149  Sum_probs=108.0

Q ss_pred             hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHH
Q 019679           70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  149 (337)
Q Consensus        70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll  149 (337)
                      .++.+.++++|+++.+|..++..|+.+..        ...+|.+.+++.|+++.||..++.+++.+..        +..+
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~   83 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV   83 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence            44555556667777777777777766653        2445666666667677777777766666542        2344


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  229 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  229 (337)
                      |.+.+.++|+++.+|..++..++.+..        +..++.+..+++|+++.||..++.+|+.+.    .    +..++.
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~  147 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIG----D----ERAVEP  147 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----C----HHHHHH
Confidence            555566666666666666666655432        123455555666666666666666666542    1    134555


Q ss_pred             HHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          230 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       230 l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                      +..++.|+++.+|..++.+++.+..        +..++.+..++.|+++.||.+|..+|+.+...
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            5566666666666666666666532        34455555566666666666666666666543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.77  E-value=6.5e-17  Score=127.20  Aligned_cols=187  Identities=20%  Similarity=0.246  Sum_probs=139.6

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      .+...+.+.+.+.|+++.+|..++..|+.+..        ...++.+.++++|+++.+|..++..++.+..        .
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence            35678888888999999999999988887654        2355667777788889999999998888764        2


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHH
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  187 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  187 (337)
                      ..++.+.+++.|+++.||..++.+++.+..        +..+|.+.+.++|+++.+|..++..++.+..        +..
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~  139 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA  139 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence            456788888888888899988888887643        3356667777788888888888888777642        235


Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679          188 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  254 (337)
Q Consensus       188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~  254 (337)
                      ++.+..+++|+++.||..++.+|+.+    |.    +..++.+..+++|+++.+|..+..+++.+..
T Consensus       140 ~~~L~~~l~d~~~~vr~~A~~aL~~~----~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          140 VEPLIKALKDEDGWVRQSAADALGEI----GG----ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHH----CS----HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            56677778888888888888888776    22    2356666677777778888888887777643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.77  E-value=1.3e-16  Score=146.13  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=204.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.+|-.++++++.++.   ++ ..+.++|.+.+++.|+++.||+.|+.++..+....+ +. .+.+++.+..++.|+
T Consensus       118 ~~n~~vr~lAL~~L~~i~~---~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-v~~~~~~l~~lL~D~  191 (618)
T 1w63_A          118 HSTQFVQGLALCTLGCMGS---SE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-MEMFLPATKNLLNEK  191 (618)
T ss_dssp             CSSSHHHHHHHHHHHHHCC---HH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-GGGGGGGTTTSTTCC
T ss_pred             CCCHhHHHHHHHHHHhcCC---HH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-HHHHHHHHHHHhCCC
Confidence            7889999999999998872   22 235679999999999999999999999999988643 32 246888888999999


Q ss_pred             cHHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcC---------------CChhHHHHHHHhHHHhHhhhchhhHH
Q 019679           82 SQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGIDLLS  145 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~~~~  145 (337)
                      ++.|+.+++.+++.++..-++. .....++|.+.+.+.+               .++..+..+++.++.+...- + ...
T Consensus       192 d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~-~~~  269 (618)
T 1w63_A          192 NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-D-DSS  269 (618)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-H-HHH
T ss_pred             CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-H-HHH
Confidence            9999999999999998753321 1224556666665543               47888888888888876532 1 122


Q ss_pred             hhHHHHHHHHhc------CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679          146 QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  219 (337)
Q Consensus       146 ~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  219 (337)
                      +.+.+.+..+++      +.+..+...++.++..+..   .........+.+..++.++++++|..|+.+++.++... +
T Consensus       270 ~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p  345 (618)
T 1w63_A          270 EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-H  345 (618)
T ss_dssp             HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-H
Confidence            344555555432      2344667777666665422   12223356777888899999999999999999998764 2


Q ss_pred             HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          220 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       220 ~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      + ......+.+..++.|++..+|..++..+..++..-.-    ..+++.+..++.+.+.++|..++.+++.++..+.+
T Consensus       346 ~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~  418 (618)
T 1w63_A          346 N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAP  418 (618)
T ss_dssp             H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCC
T ss_pred             H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCc
Confidence            3 3445677888899999999999999999998764332    34566666777778899999999999999987643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.77  E-value=3.8e-17  Score=128.51  Aligned_cols=187  Identities=16%  Similarity=0.227  Sum_probs=136.6

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHH
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  186 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  186 (337)
                      ....+.++++++|+++.+|..++..++.+..        +..+|.+.+.++|+++.+|..++..++.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            3556777788888888888888888776643        2355667777778888888888877776532        12


Q ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHH
Q 019679          187 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL  266 (337)
Q Consensus       187 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~  266 (337)
                      .++.+...+.|+++.||..++.+|+.+.    .    ...++.+...+.|+++.+|..++.+++.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIG----D----ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC----C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC----c----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            4566777788888888888888887653    1    2366777777888888888888888888653        3566


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +.+..++.|+++.||.+++.+|+.+..        ....+.|..+++|+++.||..|.++|+.+.+.
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
Confidence            778888888888888888888888743        35666677777888888888888888876543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.77  E-value=1.9e-16  Score=146.33  Aligned_cols=331  Identities=11%  Similarity=0.039  Sum_probs=244.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~   75 (337)
                      |+++.+|..++.+++.++.......   .....++.+.+.+.+ +++++|..++.+|..++..-...  ......+|.+.
T Consensus        25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv  104 (644)
T 2z6h_A           25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV  104 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHH
Confidence            5789999999999999997543211   112568888888865 48999999999999877542211  12234788899


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL  149 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll  149 (337)
                      ++++++++.+|..++.+|.+++.....   .......+|.+.+++.+.++.++..++.+|..++.....   .......+
T Consensus       105 ~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v  184 (644)
T 2z6h_A          105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP  184 (644)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCCh
Confidence            999999999999999999999865322   112367899999999999999999999999888753211   11234567


Q ss_pred             HHHHHHhcCCc-hHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          150 PAIVELAEDRH-WRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       150 p~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                      |.+..++.+.+ ..++..++..+..++.....  .......++.+..++++++..++..++.+|..++............
T Consensus       185 ~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~  264 (644)
T 2z6h_A          185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL  264 (644)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence            88888876654 56777788888777643221  1122347888999999999999999999999997654322234568


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccC---hHHHHhhHHHHHHhhccCC--ChhHHHHHHHHHHHHhhhhcHH---
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS---  298 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~---  298 (337)
                      +|.+..++.+.++.+|..++.++..++..-.   ........++.+..++.+.  .+.||..++.+|+.++...+..   
T Consensus       265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~  344 (644)
T 2z6h_A          265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA  344 (644)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence            9999999999999999999999999976421   1122345788888888763  3799999999999997543321   


Q ss_pred             ---HHHHhhhHHHHhhhCCCC-ccHHHHHHHHHHHHHH
Q 019679          299 ---VVEKSIRPCLVELSEDPD-VDVRFFATQALQSKDQ  332 (337)
Q Consensus       299 ---~~~~~i~~~l~~l~~d~~-~~vr~~a~~al~~l~~  332 (337)
                         ......+|.|..++.+++ +.+|..++.+|+.++.
T Consensus       345 q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             HHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence               233467888888888765 6999999999998864

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.72  E-value=1.6e-15  Score=139.03  Aligned_cols=298  Identities=11%  Similarity=0.031  Sum_probs=189.6

Q ss_pred             hCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC
Q 019679           22 VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG  101 (337)
Q Consensus        22 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  101 (337)
                      .|.+.  +...+.+.+++.+++.+.|+.+...+..+++. .++ ..-.+...+.+-++|+++.+|..|+.+++.+..   
T Consensus        64 ~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~-~~e-~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---  136 (618)
T 1w63_A           64 LGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE-RQD-VHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---  136 (618)
T ss_dssp             TTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC-CHH-HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---
T ss_pred             cCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC-CcH-HHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---
Confidence            34443  45677777788888888888887777766553 222 223455667777788888888888888888873   


Q ss_pred             hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-
Q 019679          102 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  180 (337)
Q Consensus       102 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  180 (337)
                       ....+.++|.+.+++.|+++.||+.|+.++..+.... ++. .+.+++.+.+++.|+++.|+..++..+..++..-+. 
T Consensus       137 -~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~-v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          137 -SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PEL-MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             -HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGG-GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHH-HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence             3345677888888888888888888888888887753 332 246777777788888888888888877777643211 


Q ss_pred             hhHHHHHHHHHHHHccc---------------cchHHHHHHHHHHHHHHHHh----------------------------
Q 019679          181 GFFDDKLGALCMQWLKD---------------KVYSIRDAAANNVKRLAEEF----------------------------  217 (337)
Q Consensus       181 ~~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~~~~~~----------------------------  217 (337)
                      ......++|.+.+.|.+               .+++.+...++.++.+...-                            
T Consensus       214 ~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV  293 (618)
T 1w63_A          214 LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI  293 (618)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence            01122334444433332               24444444445444433210                            


Q ss_pred             -----------Ch-HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHH
Q 019679          218 -----------GP-DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVA  285 (337)
Q Consensus       218 -----------~~-~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  285 (337)
                                 +. ........+.+..++.+++..+|..++.+++.++...+ . ......+.++.++.|++..||..++
T Consensus       294 ~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~al  371 (618)
T 1w63_A          294 LYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAM  371 (618)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHH
Confidence                       00 01112244556666666667777777777777765321 1 2234456677777888888888888


Q ss_pred             HHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          286 KVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       286 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      ..|..++..-.-    +.+++.|...+.+.+.++|..++.+++.++..+.
T Consensus       372 elL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~  417 (618)
T 1w63_A          372 ELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA  417 (618)
T ss_dssp             HHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence            888888764321    3344555555666788888888888888887654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.71  E-value=6.1e-15  Score=120.01  Aligned_cols=226  Identities=12%  Similarity=0.094  Sum_probs=139.5

Q ss_pred             HHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC---hhhH
Q 019679          110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  183 (337)
Q Consensus       110 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~  183 (337)
                      +|.+.+++.+.++++|..++..+..++.....   .......+|.+.+++++.+..+|..++..+..++....   ....
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34455555555555555555555555433210   11112345555555555555555555555555543210   0111


Q ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--
Q 019679          184 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--  258 (337)
Q Consensus       184 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--  258 (337)
                      ....+|.+..+++++++.+|..++.+|+.++.....   .......+|.+.+++.++++.+|..++.+++.++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            223567777778888888888888888877642110   112335678888888888888888888888888754321  


Q ss_pred             -HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          259 -EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       259 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                       .......+|.+..++.++++.+|..++.+|..++..-...   .....+++.|..+++++++++|..|+.+|..+....
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             1223457888888888888888888888888887532221   223456778888888888888888888888887654


Q ss_pred             h
Q 019679          335 M  335 (337)
Q Consensus       335 ~  335 (337)
                      +
T Consensus       244 ~  244 (252)
T 4hxt_A          244 W  244 (252)
T ss_dssp             B
T ss_pred             C
Confidence            3

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.71  E-value=3.5e-14  Score=136.97  Aligned_cols=327  Identities=9%  Similarity=0.066  Sum_probs=216.7

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-----HH------HHHhhh-
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----EL------AIQHIL-   71 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-----~~------~~~~ll-   71 (337)
                      +..+|..++.++..++..-.|+ .|++++|.+.+.++++++..+..++.++..+.+....     +.      ...... 
T Consensus        98 ~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~  176 (960)
T 1wa5_C           98 PNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTA  176 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhCcc-chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence            4789999999999999987774 4799999999999988888999999999999886531     11      111222 


Q ss_pred             ---HhhHH---hcCCCcH---------HHHHHHHHHHHhcCc-ccChhh--HHhhhHHHHHHhhcCC----------C--
Q 019679           72 ---PCVKE---LSSDSSQ---------HVRSALATVIMGMAP-ILGKDA--TIEQLLPIFLSLLKDE----------F--  121 (337)
Q Consensus        72 ---~~l~~---l~~d~~~---------~vr~~a~~~l~~l~~-~~~~~~--~~~~l~~~l~~~l~d~----------~--  121 (337)
                         ..+..   .++++..         .++..+++++..+.. ..+...  .....++.+..++...          .  
T Consensus       177 ~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~  256 (960)
T 1wa5_C          177 PFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHA  256 (960)
T ss_dssp             HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CC
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccc
Confidence               22222   2444322         233345666655432 122211  1245566666655321          1  


Q ss_pred             ---hhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhc-----CCchHHHHHHHHHhhHhHhhh------ChhhHHH
Q 019679          122 ---PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQL------GVGFFDD  185 (337)
Q Consensus       122 ---~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~------~~~~~~~  185 (337)
                         ..+|+.++.++..+.+..+..  .+.+.+++.+.+.+.     ..+..++..+++.+..+++.-      ....+.+
T Consensus       257 ~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~  336 (960)
T 1wa5_C          257 SVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMN  336 (960)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHH
Confidence               357889999998888765432  122344454444443     345678888888888776432      1113445


Q ss_pred             HHH-HHHHHHcc-----------------------ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc------
Q 019679          186 KLG-ALCMQWLK-----------------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------  235 (337)
Q Consensus       186 ~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------  235 (337)
                      .++ +.++..+.                       +..+.+|.+|...+..++..++ +.+.+.+++.+.+.+.      
T Consensus       337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~  415 (960)
T 1wa5_C          337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDP  415 (960)
T ss_dssp             HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCc
Confidence            555 55555442                       1234689999999999999986 5566778888877776      


Q ss_pred             CcchHHHHHHHHHHHHhcccc-ChH----------HHHhhHHHHHHhhccCC---ChhHHHHHHHHHHHHhhhhcHHHHH
Q 019679          236 NPHYLYRMTILQAISLLAPVM-GSE----------ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSVVE  301 (337)
Q Consensus       236 ~~~~~vR~~~~~~l~~l~~~~-~~~----------~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~i~~~~~~~~~~  301 (337)
                      +++|+.|.+++.+++.++... +.+          .+.+.+...+...+.|+   ++.||.+++.+++++++.+.++ +.
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l  494 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QL  494 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HH
Confidence            678999999999999997542 111          12222223344445666   8999999999999999988654 56


Q ss_pred             HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          302 KSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       302 ~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ..+++.+...+.|+++.||..|+.||..+...
T Consensus       495 ~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          495 IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            77888888888888899999999999998764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.71  E-value=6.2e-15  Score=134.77  Aligned_cols=294  Identities=11%  Similarity=0.057  Sum_probs=193.0

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc--CCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      ..+.+.+-++|+|+.+|..|+.+++.+..    ..+.+.+.|.+.+++  .|+++.||+.|+-++.++....++......
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~  187 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence            35566666677777777777777776632    235567777777777  788888888888888877764432221136


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHhcCC-------------chHHHHHHHHHhhH
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-------------HWRVRLAIIEYIPL  173 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~d~-------------~~~vr~~~~~~l~~  173 (337)
                      +++.+.+++.|+++.|+.+|+..+..+...-+..  .+.+.++..+.+++.+.             ++-.+...++.+..
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            7778888888888888888888877776643211  12233444444443221             34566666677666


Q ss_pred             hHhhhChhhHHHHHHH---HHHHHccc---------cc--hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcch
Q 019679          174 LASQLGVGFFDDKLGA---LCMQWLKD---------KV--YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY  239 (337)
Q Consensus       174 l~~~~~~~~~~~~l~~---~l~~~l~d---------~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  239 (337)
                      +...-.++ ..+.+.+   .+++.+.+         .+  ..|...+++++-.+.   ..........+.+..++.+++.
T Consensus       268 ~~~~~d~~-~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~  343 (621)
T 2vgl_A          268 YPPPEDPA-VRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET  343 (621)
T ss_dssp             SSSCSSHH-HHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred             hCCCCCHH-HHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence            65322221 1222222   33322222         12  266666666666543   2233455677888888888889


Q ss_pred             HHHHHHHHHHHHhccccChHHHHhhHHHHHHhhcc-CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCcc
Q 019679          240 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD  318 (337)
Q Consensus       240 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~  318 (337)
                      .+|..++.++..++...+...+.....+.++.++. |++..||..++..+..++..    ...+.++..|...+.+.+.+
T Consensus       344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~  419 (621)
T 2vgl_A          344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS  419 (621)
T ss_dssp             HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred             chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence            99999999999998766432334556677888888 99999999999998888753    22466777777777778999


Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 019679          319 VRFFATQALQSKDQVMMS  336 (337)
Q Consensus       319 vr~~a~~al~~l~~~~~~  336 (337)
                      +|..++.+++.++..+.+
T Consensus       420 ~~~~~v~~I~~la~k~~~  437 (621)
T 2vgl_A          420 IREEIVLKVAILAEKYAV  437 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            999999999999887653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.9e-16  Score=126.11  Aligned_cols=192  Identities=13%  Similarity=0.124  Sum_probs=157.4

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHH-HHHhhCH----HHHHHhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccC-
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTK-ICRILNP----ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG-  101 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~-~~~~~~~----~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~-  101 (337)
                      +.+=+-+.+.+++.+|.-|++++..+.. +++.++.    ......++..+.+.+ +|++..||..++++++.+++.++ 
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            3444566778899999999999999999 8754321    111134677777777 89999999999999999998776 


Q ss_pred             hh---hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhH
Q 019679          102 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  175 (337)
Q Consensus       102 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  175 (337)
                      +.   .+...++|.+++.++|..+.||..+..++..+++..++...   .+.+++.+...+++++|++|..++.++..++
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            33   34467899999999999999999999999999998754211   3578888889999999999999999999999


Q ss_pred             hhhCh--h---hHH-HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          176 SQLGV--G---FFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       176 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      ...+.  .   .+. +.++|.+.+++.|+++.||.+|..+++.+...+|.+
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~  225 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN  225 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence            88763  2   245 779999999999999999999999999999999875

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1e-15  Score=123.64  Aligned_cols=201  Identities=15%  Similarity=0.138  Sum_probs=132.0

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHH-hHhhhch-h--h-HHhhHHHHHHHHh-cCCchHHHHHHHHHhhHhHhhhC-
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGI-D--L-LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG-  179 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~-l~~~~~~-~--~-~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~-  179 (337)
                      ..+-+-+.+.+.++++.-|.+++..+.. +.+.... .  . -...++..+.+.+ +|++..+|..++.+++.++..++ 
T Consensus        15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            4455556667777777777777777777 6653221 1  1 1135666666666 67777777777777777777776 


Q ss_pred             hh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHh---hHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679          180 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ---HIVPQVLEMINNPHYLYRMTILQAISLLA  253 (337)
Q Consensus       180 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~~~~~~~~vR~~~~~~l~~l~  253 (337)
                      +.   .+...++|.++..++|....||+++..++..++...++.....   .+++.+...+++++|++|+.++.++..+.
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            43   3445677777777777777777777777777777665532221   56677777777777777777777777777


Q ss_pred             cccCh--H---HHH-hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679          254 PVMGS--E---ITC-SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  311 (337)
Q Consensus       254 ~~~~~--~---~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  311 (337)
                      ...+.  .   .+. ..++|.+.+++.|..++||.+|..+++.++..+|.+    .+.|.+..+
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~----~~~p~l~~L  234 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN----TFVKTLEHL  234 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG----GGHHHHHHS
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHH
Confidence            66663  2   234 667777777777777777777777777777777743    344444443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.69  E-value=3.6e-15  Score=121.38  Aligned_cols=224  Identities=13%  Similarity=0.095  Sum_probs=164.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hh
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DA  104 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~  104 (337)
                      -+|.+.+++.++++++|..++.++..++...+..   ......+|.+.++++++++.+|..++.++++++.....   ..
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            3788899999999999999999999998764321   23345789999999999999999999999999864221   11


Q ss_pred             HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-
Q 019679          105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  180 (337)
Q Consensus       105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  180 (337)
                      .....+|.+..++.++++.+|..++.++..++.....   .......+|.+.+++.+.++.+|..++.++..++..... 
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            2346899999999999999999999999999853211   122345788888888888888888888888888764221 


Q ss_pred             --hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679          181 --GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  254 (337)
Q Consensus       181 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~  254 (337)
                        .......+|.+..++.++++.+|..++.+++.++... ++    ......++.+.+++.+++..+|..++.++..++.
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence              1122347778888888888888888888888776421 11    1123456677777777677777777777777654


Q ss_pred             c
Q 019679          255 V  255 (337)
Q Consensus       255 ~  255 (337)
                      .
T Consensus       242 ~  242 (252)
T 4hxt_A          242 G  242 (252)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.69  E-value=4.2e-15  Score=121.12  Aligned_cols=225  Identities=16%  Similarity=0.121  Sum_probs=171.9

Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---h
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---G  181 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~  181 (337)
                      .-.+.+.+.+.++++++|..++..+..+......   .......+|.+.++++++++.+|..++..+..++.....   .
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3467788888888899999999998765554111   122345788888999888889999999988888753211   1


Q ss_pred             hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh
Q 019679          182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS  258 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~  258 (337)
                      ......+|.+..+++++++.+|..|+.+|+.++......   ......+|.+.+++.++++.+|..++.+++.++.....
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            122347899999999999999999999999987543211   12345889999999999999999999999999864322


Q ss_pred             H---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          259 E---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       259 ~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      .   ......+|.+..++.++++.+|..++.+|+.++..-...   ......++.|..++.+.++++|..|+.+|..+++
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            1   223568999999999999999999999999998533221   2334588889999999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.68  E-value=1.9e-14  Score=134.82  Aligned_cols=287  Identities=15%  Similarity=0.171  Sum_probs=221.5

Q ss_pred             HHHHHHHHHhHHHHHHhhC-HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh----hhHHhhhHHHHHHhhc
Q 019679           44 AEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLK  118 (337)
Q Consensus        44 ~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~  118 (337)
                      ..-+..++..+..+...-. .......++..+++.+.|....  +.|+..+..+++..+.    +.+.-.++|.++..+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  105 (986)
T 2iw3_A           28 ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG  105 (986)
T ss_dssp             TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence            3335566666666544211 1111125677788888887555  9999999999976643    3334457899999999


Q ss_pred             CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCC-chHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHc
Q 019679          119 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL  195 (337)
Q Consensus       119 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l  195 (337)
                      |+...||.+|..+...+.+.+.++.. ..++|.+...+.+. .|+.+.+++..+..++......  ...+.++|.+...+
T Consensus       106 dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  184 (986)
T 2iw3_A          106 NKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETM  184 (986)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhc
Confidence            99999999999999999999999887 88999998887654 6999999999999999876322  25678999999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-hHHHHhhHHHHHHhhcc
Q 019679          196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASK  274 (337)
Q Consensus       196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~  274 (337)
                      .|..++|..+|..++..++..+++.. .+..+|.+.+++.+++. +-. ++..++...-.-. ..+....+.|.|...|.
T Consensus       185 ~d~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~~~-~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~  261 (986)
T 2iw3_A          185 WDTKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-VPE-TVHLLGATTFVAEVTPATLSIMVPLLSRGLN  261 (986)
T ss_dssp             TCSSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-HHH-HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-hHH-HHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence            99999999999999999999888765 45689999999999853 322 2344433211111 23456689999999999


Q ss_pred             CCChhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHHHhhhC
Q 019679          275 DRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       275 d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +....+++.++-.+.++++.....    .|..+++|.+.+..+ =.+|++|..+.+|+..+.+..+.
T Consensus       262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999887654    566788888888544 46899999999999999887654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.68  E-value=6.1e-15  Score=120.13  Aligned_cols=224  Identities=14%  Similarity=0.118  Sum_probs=166.0

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---  102 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---  102 (337)
                      +.-++.+.+.+.++++++|..++..+..+.....+.   ......+|.+.++++++++.+|..++.+|++++.....   
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            456899999999999999999999998766652211   23345789999999999999999999999999863321   


Q ss_pred             hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC
Q 019679          103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  179 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  179 (337)
                      .......+|.+..++.++++.+|..++.++..++......   ......+|.+.++++++++.+|..++..+..++....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            1122458999999999999999999999999997654322   2234588999999999999999999999998886432


Q ss_pred             hh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679          180 VG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLL  252 (337)
Q Consensus       180 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l  252 (337)
                      ..   ......+|.+.+++.++++.+|..++.+|+.++... ++    ......++.+.+++.+.+..+|..++.++..+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            11   122456788888888888899999998888886321 11    11234566666666666666666666666665


Q ss_pred             c
Q 019679          253 A  253 (337)
Q Consensus       253 ~  253 (337)
                      +
T Consensus       250 ~  250 (252)
T 4db8_A          250 Q  250 (252)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.65  E-value=7.5e-14  Score=123.43  Aligned_cols=330  Identities=13%  Similarity=0.117  Sum_probs=227.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~   75 (337)
                      .+++.+|..++.++..++..-.+   .......+|.+.+++.++++.++..|+.+|..++...++.   ......+|.+.
T Consensus        13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv   92 (457)
T 1xm9_A           13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV   92 (457)
T ss_dssp             SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence            35788999999999998843222   1122457999999999999999999999999998641111   22344788888


Q ss_pred             HhcC-CCcHHHHHHHHHHHHhcCcccC-hhhHHhhhHHHHHHhh--------cC--------CChhHHHHHHHhHHHhHh
Q 019679           76 ELSS-DSSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLL--------KD--------EFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        76 ~l~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l--------~d--------~~~~vr~~a~~~l~~l~~  137 (337)
                      +++. ++++.++..++.+|.+++..-. +....+..+|.+.+++        .+        .++.+...|+.+|..++.
T Consensus        93 ~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~  172 (457)
T 1xm9_A           93 SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS  172 (457)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence            9988 7899999999999999986522 1212237889999999        22        245677799999999987


Q ss_pred             hhch-hhHHh--hHHHHHHHHhcC------CchHHHHHHHHHhhHhHhh----------------------------h--
Q 019679          138 VIGI-DLLSQ--SLLPAIVELAED------RHWRVRLAIIEYIPLLASQ----------------------------L--  178 (337)
Q Consensus       138 ~~~~-~~~~~--~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~----------------------------~--  178 (337)
                      .-.. +.+.+  ..+|.+..++.+      .+.+++..++..+..++..                            +  
T Consensus       173 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (457)
T 1xm9_A          173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN  252 (457)
T ss_dssp             SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhc
Confidence            5111 12222  567777766653      3334444444434333210                            0  


Q ss_pred             ----------------------Ch-hhHHHHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHhCh---H----HH-HhhH
Q 019679          179 ----------------------GV-GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGP---D----WA-MQHI  226 (337)
Q Consensus       179 ----------------------~~-~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~---~----~~-~~~l  226 (337)
                                            |. ..+....++.+..+|.+. ++.+++.|+.+|..++..-+.   +    .+ ....
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~  332 (457)
T 1xm9_A          253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG  332 (457)
T ss_dssp             -------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCC
T ss_pred             cchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCC
Confidence                                  00 112345677788888654 589999999999998743221   1    11 1467


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccC-hHHHHhhHHHHHHhhccCCCh------hHHHHHHHHHHHHhhhhcHH-
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS-  298 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~------~vr~~a~~~l~~i~~~~~~~-  298 (337)
                      +|.+.+++.+.+..+|..+++++..++..-. ........+|.+..+|...++      ++..+++.+|+.+...-... 
T Consensus       333 l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~  412 (457)
T 1xm9_A          333 LPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA  412 (457)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred             chHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            8999999999999999999999999976432 223345688999999987643      57778888888886543322 


Q ss_pred             --HHHHhhhHHHHhhhCCC-CccHHHHHHHHHHHHH
Q 019679          299 --VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKD  331 (337)
Q Consensus       299 --~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~l~  331 (337)
                        ....-.++.|..++... +.+++..|+..|..+.
T Consensus       413 ~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~  448 (457)
T 1xm9_A          413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence              11234678888888877 8899999999988764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.64  E-value=8.6e-13  Score=117.99  Aligned_cols=330  Identities=15%  Similarity=0.151  Sum_probs=231.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhH
Q 019679            3 KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVK   75 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~   75 (337)
                      ++..++..++.+|..++..-.+   .....-.+|.|.+++.++++.++..|+.+|..++..-+.+    ......+|.+.
T Consensus        60 ~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV  139 (584)
T 3l6x_A           60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALV  139 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHH
Confidence            5678899999999888842211   1122346899999999999999999999999998632222    22334678888


Q ss_pred             HhcCC-CcHHHHHHHHHHHHhcCcccC-hhhHHhhhHHHHHHhhc------------------CCChhHHHHHHHhHHHh
Q 019679           76 ELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLK------------------DEFPDVRLNIISKLDQV  135 (337)
Q Consensus        76 ~l~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~------------------d~~~~vr~~a~~~l~~l  135 (337)
                      +++.. .+..+++.++.+|.+++..-. +......-+|.+.+++.                  ..++.|+..|..+|..+
T Consensus       140 ~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL  219 (584)
T 3l6x_A          140 RLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV  219 (584)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            88775 678899999999999886322 11122445778877651                  12579999999999999


Q ss_pred             Hhhhc--hhhHH--hhHHHHHHHHhc------CCchHHHHHHHHHhhHhHhhhC--------------------------
Q 019679          136 NQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG--------------------------  179 (337)
Q Consensus       136 ~~~~~--~~~~~--~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~--------------------------  179 (337)
                      +..-.  ...+.  ..+++.|..+++      +.+......++..|..++....                          
T Consensus       220 s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  299 (584)
T 3l6x_A          220 SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPAR  299 (584)
T ss_dssp             TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCC
T ss_pred             hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCch
Confidence            76421  11121  234455555443      3455666766666666553321                          


Q ss_pred             -hh-hHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh-----H-HH-HhhHHHHHHHhhcCcchHHHHHHHHHH
Q 019679          180 -VG-FFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-----D-WA-MQHIVPQVLEMINNPHYLYRMTILQAI  249 (337)
Q Consensus       180 -~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~-----~-~~-~~~l~~~l~~~~~~~~~~vR~~~~~~l  249 (337)
                       .+ .+.+..++.++.++.+ .++.+++.|+.+|..++..-+.     . .+ ....+|.+.+++.+++..++..++.++
T Consensus       300 Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL  379 (584)
T 3l6x_A          300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL  379 (584)
T ss_dssp             GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             hHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence             11 1234567888888864 5789999999999998642111     1 11 245799999999999999999999999


Q ss_pred             HHhccccC-hHHHHhhHHHHHHhhccCC--------ChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCC--
Q 019679          250 SLLAPVMG-SEITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDP--  315 (337)
Q Consensus       250 ~~l~~~~~-~~~~~~~l~~~l~~~l~d~--------~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~--  315 (337)
                      ..++.... ...+....+|.+..+|.+.        ..+++..++.+|+.+...-..   .......+|.|..++.+.  
T Consensus       380 ~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~  459 (584)
T 3l6x_A          380 RNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNR  459 (584)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSS
T ss_pred             HHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCC
Confidence            99986554 3445567899999999776        357888999999988643221   133456888888988875  


Q ss_pred             CccHHHHHHHHHHHHHH
Q 019679          316 DVDVRFFATQALQSKDQ  332 (337)
Q Consensus       316 ~~~vr~~a~~al~~l~~  332 (337)
                      ++.++..|+.+|..+..
T Consensus       460 ~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          460 SEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHc
Confidence            78899999999998864

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.63  E-value=2.8e-13  Score=123.83  Aligned_cols=314  Identities=13%  Similarity=0.031  Sum_probs=221.7

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ   83 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~   83 (337)
                      +...|+.++..+-.+ ...|.+.  +...+.+.+++++++.+.|+.+.-.+..+++.. ++ ..-.+...+.+-++|+|+
T Consensus        51 ~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e-~~~L~iN~l~kDl~~~n~  125 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SE-LIRLINNAIKNDLASRNP  125 (621)
T ss_dssp             CHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HH-HHHHHHHHHHHHHHSCCH
T ss_pred             CHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cH-HHHHHHHHHHHhcCCCCH
Confidence            344555555544433 3357665  467888889999999999999999988887653 22 223456778888899999


Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhh--cCCChhHHHHHHHhHHHhHhhhchhhHH-hhHHHHHHHHhcCCc
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLS-QSLLPAIVELAEDRH  160 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~llp~l~~~~~d~~  160 (337)
                      .+|..|+.+++.+..    ....+.+.|.+.+++  .|.++.||+.|+-++..+.+. .++.+. +.+++.+.+++.|++
T Consensus       126 ~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d  200 (621)
T 2vgl_A          126 TFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQH  200 (621)
T ss_dssp             HHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCC
Confidence            999999999999975    345678999999999  999999999999999999985 444442 278899999999999


Q ss_pred             hHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHcccc-------------chHHHHHHHHHHHHHHHHhChHHHHhh
Q 019679          161 WRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDK-------------VYSIRDAAANNVKRLAEEFGPDWAMQH  225 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~-------------~~~vr~~a~~~l~~~~~~~~~~~~~~~  225 (337)
                      +.|+.+++..+..++..-+..  .+.+.++..+.+++.+.             +++.+...++.++.+...-+++ ..+.
T Consensus       201 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~~  279 (621)
T 2vgl_A          201 LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRGR  279 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHHH
T ss_pred             ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHHH
Confidence            999999999999887653321  13344555555554321             5677877777777654321112 2222


Q ss_pred             ---HHHHHHHhhc---------Ccc--hHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          226 ---IVPQVLEMIN---------NPH--YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       226 ---l~~~l~~~~~---------~~~--~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                         +++.+.+...         +.+  ..+...++.++..+.   ....+.......+..++.++++++|..++.++..+
T Consensus       280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l  356 (621)
T 2vgl_A          280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL  356 (621)
T ss_dssp             HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence               3333333221         112  266667777777764   23335556778888889888999999999999999


Q ss_pred             hhhhcHHHHHHhhhHHHHhhhC-CCCccHHHHHHHHHHHHH
Q 019679          292 IPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQSKD  331 (337)
Q Consensus       292 ~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~  331 (337)
                      ....+.........+.+..++. |++..||..+...+..++
T Consensus       357 ~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          357 ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             TTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             HhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            8776522233555666666667 999999999988877665

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.62  E-value=5.4e-17  Score=129.24  Aligned_cols=187  Identities=21%  Similarity=0.291  Sum_probs=143.2

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH
Q 019679           36 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS  115 (337)
Q Consensus        36 ~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  115 (337)
                      .+++.|+++.||..++..+       +        ...+..+.+|+++.||..++..+       +.        +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence            4667999999999999864       1        23577799999999999999753       11        35778


Q ss_pred             hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc
Q 019679          116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  195 (337)
Q Consensus       116 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  195 (337)
                      +++|+++.||..++..+       ..+        .+..+.+|+++.||..++..+       +.        +.+..++
T Consensus       106 ll~D~d~~VR~~aA~~l-------~~~--------~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------PLE--------QLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------CTG--------GGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------CHH--------HHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            89999999999998864       211        234567999999999998743       22        2344678


Q ss_pred             cccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC
Q 019679          196 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD  275 (337)
Q Consensus       196 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  275 (337)
                      +|+++.||..++..       .+.        +.+..+++|++|.||.+++..+       +.        +.+..++.|
T Consensus       156 ~D~d~~VR~~aa~~-------l~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHc-------CCH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence            99999999999886       222        2344678999999999998753       11        456778999


Q ss_pred             CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679          276 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ  328 (337)
Q Consensus       276 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~  328 (337)
                      +++.||.+++..++               .+.|..| +|+++.||..+.++|+
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            99999999998864               2566678 9999999999987764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.60  E-value=1.6e-16  Score=126.59  Aligned_cols=182  Identities=19%  Similarity=0.264  Sum_probs=138.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.||+.++..+       +        ...+..+++|+++.||..++..+.               .+.+..+++|+
T Consensus        61 d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L~---------------~~~L~~ll~D~  110 (244)
T 1lrv_A           61 DPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRLP---------------REQLSALMFDE  110 (244)
T ss_dssp             CSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGTTTCS
T ss_pred             CCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHCC---------------HHHHHHHHcCC
Confidence            88999999999964       1        234667889999999999997642               14677899999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  161 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~  161 (337)
                      ++.||..++..+   .    .        +.+..+++|+++.||..++..+       +.        +.+..+.+|++|
T Consensus       111 d~~VR~~aA~~l---~----~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~~D~d~  160 (244)
T 1lrv_A          111 DREVRITVADRL---P----L--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMRDEDR  160 (244)
T ss_dssp             CHHHHHHHHHHS---C----T--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTTCSCH
T ss_pred             CHHHHHHHHHhC---C----H--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHHcCCCH
Confidence            999999999853   1    1        2356778999999999999842       22        123467799999


Q ss_pred             HHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHH
Q 019679          162 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY  241 (337)
Q Consensus       162 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  241 (337)
                      .||..++..+       +.        +.+..+++|++|.||..++..+       +.        +.+..++.|++|.|
T Consensus       161 ~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~V  210 (244)
T 1lrv_A          161 QVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTV  210 (244)
T ss_dssp             HHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHH
T ss_pred             HHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHH
Confidence            9999998862       22        3444688999999999998763       22        34666789999999


Q ss_pred             HHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679          242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  289 (337)
Q Consensus       242 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  289 (337)
                      |..++..++               .+.+..+ .|+++.||.++...|+
T Consensus       211 R~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          211 RLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             HHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             HHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            999988753               2556566 9999999999987664

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.59  E-value=1.4e-12  Score=113.94  Aligned_cols=305  Identities=13%  Similarity=0.051  Sum_probs=212.1

Q ss_pred             cchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHHhhCHHH---HHHhhh----------HhhHHhcCCCc-
Q 019679           29 SDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICRILNPEL---AIQHIL----------PCVKELSSDSS-   82 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~------------~~vR~~a~~~l~~~~~~~~~~~---~~~~ll----------~~l~~l~~d~~-   82 (337)
                      .-.+|.|.+++.+.+            +++|..|+.+|..++..-+...   ....++          +.+.++++..+ 
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            357899999998632            6999999999999998754431   111222          22223332221 


Q ss_pred             ----H--HHHH-------HHHHHHHhcCcccCh--hhHHhhhHHHHHHhhc-----------CCChhHHHHHHHhHHHhH
Q 019679           83 ----Q--HVRS-------ALATVIMGMAPILGK--DATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVN  136 (337)
Q Consensus        83 ----~--~vr~-------~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~  136 (337)
                          .  .||.       .|+.+|++++..-..  .......++.+..++.           +.++.++..|+.+|..++
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence                1  1665       888999988653111  1122457788888873           134679999999999998


Q ss_pred             hhhch--hhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hh-HHHHHHHHHHHH-ccccchHHHHHHH
Q 019679          137 QVIGI--DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAA  207 (337)
Q Consensus       137 ~~~~~--~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~  207 (337)
                      ..-..  ..+  ....+|.+..++.+.+..++..++..|..++..-+.   .. .....+|.++++ ++..+..+++.++
T Consensus       229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~  308 (458)
T 3nmz_A          229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL  308 (458)
T ss_dssp             TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHH
T ss_pred             CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHH
Confidence            54321  122  245689999999999999999999999998753111   11 223467888886 5667889999999


Q ss_pred             HHHHHHHHHh-Ch--HHH-HhhHHHHHHHhhcCcch----HHHHHHHHHHHHhccc--cChH----HHHhhHHHHHHhhc
Q 019679          208 NNVKRLAEEF-GP--DWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINAS  273 (337)
Q Consensus       208 ~~l~~~~~~~-~~--~~~-~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~--~~~~----~~~~~l~~~l~~~l  273 (337)
                      .++..++... +.  ... ....+|.+.+++.+.+.    .++..++.++..++..  .+.+    ......+|.+..++
T Consensus       309 ~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL  388 (458)
T 3nmz_A          309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL  388 (458)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred             HHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence            9999988632 11  112 34688999999986543    5888888999888752  1221    12335789999999


Q ss_pred             cCCChhHHHHHHHHHHHHhhhh-cHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          274 KDRVPNIKFNVAKVLQSLIPIV-DQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       274 ~d~~~~vr~~a~~~l~~i~~~~-~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      .+.+..++..|+.+|..++..- ...  ....-.+|.|..++..++.++|..|+.+|..+...
T Consensus       389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998422 111  23345789999999999999999999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.58  E-value=6.6e-13  Score=117.38  Aligned_cols=299  Identities=13%  Similarity=0.110  Sum_probs=209.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhH
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DAT  105 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  105 (337)
                      +|.+.+++.+++++++..|+.+|..++....+   .......+|.+.++++++++.++..++.+|.+++..-++   ...
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            78888999999999999999999999854332   223345789999999999999999999999999863111   112


Q ss_pred             HhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhch-hhHHhhHHHHHHHHh--------cCC--------chHHHHHH
Q 019679          106 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELA--------EDR--------HWRVRLAI  167 (337)
Q Consensus       106 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~--------~d~--------~~~vr~~~  167 (337)
                      ....+|.+.+++. +.+++++..++.+|..++..-.. ..+.+..+|.+.+++        .+.        +..+...+
T Consensus        84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a  163 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence            3467899999999 77899999999999999876221 223337888888888        222        33455588


Q ss_pred             HHHhhHhHhhhChhh---HH--HHHHHHHHHHccc------cchHHHHHHHHHHHHHHH---------------------
Q 019679          168 IEYIPLLASQLGVGF---FD--DKLGALCMQWLKD------KVYSIRDAAANNVKRLAE---------------------  215 (337)
Q Consensus       168 ~~~l~~l~~~~~~~~---~~--~~l~~~l~~~l~d------~~~~vr~~a~~~l~~~~~---------------------  215 (337)
                      +.++..++..  ++.   ..  +..+|.+..++.+      .+..+++.++..+..++.                     
T Consensus       164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            8888888764  211   11  1466777777764      334455555555554421                     


Q ss_pred             -------Hh------------------------ChHH-HHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccChH---
Q 019679          216 -------EF------------------------GPDW-AMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE---  259 (337)
Q Consensus       216 -------~~------------------------~~~~-~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~---  259 (337)
                             .+                        |.+. .....++.+..++.+. +..+++++++++..++..-+..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                   00                        0011 1234567777777644 5889999999999998654321   


Q ss_pred             ----HH-HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCc------cHHHHHHHHH
Q 019679          260 ----IT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDV------DVRFFATQAL  327 (337)
Q Consensus       260 ----~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~------~vr~~a~~al  327 (337)
                          .+ ....+|.+.+++.+.+..+|..|+.+|..++..-... .+....+|.|..++...++      ++...++.+|
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l  401 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence                11 2467899999999999999999999999998754333 3345688888888776543      5777888888


Q ss_pred             HHHHH
Q 019679          328 QSKDQ  332 (337)
Q Consensus       328 ~~l~~  332 (337)
                      +.+..
T Consensus       402 ~ni~~  406 (457)
T 1xm9_A          402 RNLMA  406 (457)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.57  E-value=3.2e-12  Score=118.55  Aligned_cols=278  Identities=13%  Similarity=0.017  Sum_probs=190.3

Q ss_pred             chHHHHHHhcC---CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhc---CC-CcHHHHHHHHHHHHhcCcccCh
Q 019679           30 DVVPAYVRLLR---DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS---SD-SSQHVRSALATVIMGMAPILGK  102 (337)
Q Consensus        30 ~l~~~l~~~~~---d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~---~d-~~~~vr~~a~~~l~~l~~~~~~  102 (337)
                      +-+..+..++.   ++++.+|..|+.+++-+......+ ....+.+.+..--   .+ ..+.+|..++-.||.+.--.++
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~  470 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN  470 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence            45777777776   678999999999999987776643 2233444433211   00 0378999999999987654443


Q ss_pred             hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      +    ++++.+...+.|.+..+|..++-+++.+.-..+.....+.++..+.   ++.+..+|..++..|+.+.  +|...
T Consensus       471 e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e  541 (963)
T 4ady_A          471 I----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQE  541 (963)
T ss_dssp             H----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGG
T ss_pred             H----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChH
Confidence            3    4556666667777788898999999987544454444455555544   4556788988888888763  34443


Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  262 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  262 (337)
                      ..+.++..   +..+.++.+|..++.+++--.-..|.....+.++..   +..|.+..+|.+|+.+++.+.-.-  +   
T Consensus       542 ~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~--~---  610 (963)
T 4ady_A          542 LADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRD--Y---  610 (963)
T ss_dssp             GGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSS--C---
T ss_pred             HHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCC--H---
Confidence            33333333   234789999999999888655555555434434433   345777889999999999876332  1   


Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      +.+...+..+..+.++.||.+++.+|+.++..-+.    ..+++.|..+.+|++..||..|+.||+.+..
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            22223333355678899999999999999754332    4667788889999999999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.57  E-value=9.3e-12  Score=111.35  Aligned_cols=319  Identities=13%  Similarity=0.060  Sum_probs=216.7

Q ss_pred             HHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHH
Q 019679           13 NQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSA   88 (337)
Q Consensus        13 ~~l~~~~~~~~-~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~   88 (337)
                      ..|..+-+..+ +......-+|.+.+++.++++.++..|+.+|..++......   ......+|.|.+++.++++.++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~  109 (584)
T 3l6x_A           30 ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG  109 (584)
T ss_dssp             ----------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHH
Confidence            33444433322 33344567999999999999999999999998887532221   223347899999999999999999


Q ss_pred             HHHHHHhcCcccChh----hHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch-hhHHhhHHHHHHHHhc-----
Q 019679           89 LATVIMGMAPILGKD----ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAE-----  157 (337)
Q Consensus        89 a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~llp~l~~~~~-----  157 (337)
                      |+.+|.+++..-..+    ......+|.+.+++.+ .+.++++.++.+|-.++..-.. ..+....+|.|.+++.     
T Consensus       110 Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg  189 (584)
T 3l6x_A          110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSG  189 (584)
T ss_dssp             HHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHC
T ss_pred             HHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccc
Confidence            999999998632221    1234678999999986 5789999999999888764221 2233445677766541     


Q ss_pred             -------------CCchHHHHHHHHHhhHhHhhhC--hhhHH--HHHHHHHHHHccc------cchHHHHHHHHHHHHHH
Q 019679          158 -------------DRHWRVRLAIIEYIPLLASQLG--VGFFD--DKLGALCMQWLKD------KVYSIRDAAANNVKRLA  214 (337)
Q Consensus       158 -------------d~~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~d------~~~~vr~~a~~~l~~~~  214 (337)
                                   ..+..++..++.+|..++..-.  .....  .-+++.++.++++      .+....+.|+.+|..++
T Consensus       190 ~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs  269 (584)
T 3l6x_A          190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS  269 (584)
T ss_dssp             CC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence                         1246899999999988875321  11111  1245566665543      45567788888887765


Q ss_pred             HHhC---------------------------hHHH-HhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChH--H---
Q 019679          215 EEFG---------------------------PDWA-MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE--I---  260 (337)
Q Consensus       215 ~~~~---------------------------~~~~-~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~--~---  260 (337)
                      ....                           .+.+ ....++.++.++. ..+..++++++.+|..++..-+..  .   
T Consensus       270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~  349 (584)
T 3l6x_A          270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS  349 (584)
T ss_dssp             TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH
Confidence            3321                           0111 1245677778885 456899999999999997543221  1   


Q ss_pred             --HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCC--------CccHHHHHHHHHHH
Q 019679          261 --TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDP--------DVDVRFFATQALQS  329 (337)
Q Consensus       261 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~--------~~~vr~~a~~al~~  329 (337)
                        .....+|.|..++..++..|+..++.+|..++...... .+....+|.|..++...        +.+++..|+.+|++
T Consensus       350 ~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N  429 (584)
T 3l6x_A          350 ALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE  429 (584)
T ss_dssp             HHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence              12356999999999999999999999999998765443 44567888888887765        35788889999887


Q ss_pred             HH
Q 019679          330 KD  331 (337)
Q Consensus       330 l~  331 (337)
                      +.
T Consensus       430 L~  431 (584)
T 3l6x_A          430 VI  431 (584)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.56  E-value=2.1e-12  Score=119.74  Aligned_cols=298  Identities=14%  Similarity=0.071  Sum_probs=201.8

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHHhhCHHHHHHhhhHhh
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--------AEVRIAAAGKVTKICRILNPELAIQHILPCV   74 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~--------~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l   74 (337)
                      .++.+|..++-++|.+....+.     +.+..+...+.+++        +.+|..|+..|+.+.-....+.    +.+.|
T Consensus       407 ~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L  477 (963)
T 4ady_A          407 SSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEAL  477 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHH
Confidence            4678999999999988765543     35666666665544        7899999999997654444443    34445


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHH
Q 019679           75 KELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  154 (337)
Q Consensus        75 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~  154 (337)
                      ...+.|.+..+|..++.++|.+----|.....+.++..+   ..+.+..+|+.++.+|+.+.  +|.+...+.++.   .
T Consensus       478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~  549 (963)
T 4ady_A          478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGRQELADDLIT---K  549 (963)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---H
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---H
Confidence            555566677889899999997633233333344444443   34678899999999999873  333222233333   3


Q ss_pred             HhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH-h
Q 019679          155 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-M  233 (337)
Q Consensus       155 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~  233 (337)
                      +..+.++.+|.+++..++.-.-..|.....+.++..   +.+|.+..||.+|+.+|+.+.  +|..    ..++.+.+ +
T Consensus       550 L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~--~g~~----e~v~rlv~~L  620 (963)
T 4ady_A          550 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVL--LRDY----TTVPRIVQLL  620 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHT--SSSC----SSHHHHTTTG
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhc--cCCH----HHHHHHHHHH
Confidence            345788999999888877655555554433333333   456888899999999999875  2322    23455554 4


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhh
Q 019679          234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVEL  311 (337)
Q Consensus       234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l  311 (337)
                      ..+.++.+|..+..++|.++..-+.    ..+++.|..+.+|++..||++|+.+|+.++..-.+.  .....++..|...
T Consensus       621 ~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~  696 (963)
T 4ady_A          621 SKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV  696 (963)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence            4567899999999999999765554    356778888899999999999999999997543222  0124555555565


Q ss_pred             hCC--CCccHHHHHHHHHHHH
Q 019679          312 SED--PDVDVRFFATQALQSK  330 (337)
Q Consensus       312 ~~d--~~~~vr~~a~~al~~l  330 (337)
                      ..|  .++..|..++-|.|-+
T Consensus       697 ~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          697 ITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHCSSSCHHHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHH
Confidence            554  4677888888887755

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.54  E-value=8.2e-13  Score=104.36  Aligned_cols=185  Identities=15%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HH
Q 019679          148 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW  221 (337)
Q Consensus       148 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~  221 (337)
                      ..|.+..+++++++.+|..++..+..++..-..   .......+|.+.++++++++.+|..|+.+|+.++.....   ..
T Consensus        13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (210)
T 4db6_A           13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            344455555555555555555555555422111   112224678888888888888888888888887632111   11


Q ss_pred             HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH
Q 019679          222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      .....+|.+..++.+++..+|..++.+++.++.....   .......+|.+..++.++++.+|..++.+|..++..-...
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~  172 (210)
T 4db6_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (210)
T ss_dssp             HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence            2345788888899888889999999999998753322   1224468899999999989999999999999998653222


Q ss_pred             ---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          299 ---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       299 ---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                         ......++.|..++.+.++++|..|+.+|..+++
T Consensus       173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence               2234578888888888899999999999988764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.53  E-value=1.1e-12  Score=103.58  Aligned_cols=187  Identities=15%  Similarity=0.127  Sum_probs=139.7

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh--
Q 019679           28 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--  102 (337)
Q Consensus        28 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--  102 (337)
                      .....|.+..++.++++.+|..++.+|..++......   ......+|.+.++++++++.+|..++.++++++.....  
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            3467889999999999999999999999998543221   23345789999999999999999999999999853321  


Q ss_pred             -hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh
Q 019679          103 -DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  178 (337)
Q Consensus       103 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~  178 (337)
                       .......+|.+..++.+.++.+|..++.++..++.....   .......+|.+.+++++.+..+|..++.++..++...
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence             122346889999999999999999999999999863221   1123457888888888888888888888888887642


Q ss_pred             Chh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Q 019679          179 GVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  214 (337)
Q Consensus       179 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  214 (337)
                      ...   ......++.+.+++.++++.+|+.|+.+|..++
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            111   122346777777888888888888888777654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.51  E-value=1.1e-10  Score=113.60  Aligned_cols=327  Identities=10%  Similarity=0.070  Sum_probs=212.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------HHH--
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------ELA--   66 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---------------~~~--   66 (337)
                      +..||...+.++..++....|+ .|+++++.+.+.++ .++..+..++..|..+.+.+..               +.+  
T Consensus       113 ~~~i~~kl~~~ia~Ia~~~~p~-~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~  190 (1049)
T 3m1i_C          113 QKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK  190 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            4689999999999999997774 37899999999996 5666778888888777754321               111  


Q ss_pred             -HHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhh-ch
Q 019679           67 -IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVI-GI  141 (337)
Q Consensus        67 -~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~  141 (337)
                       ...+++.+.+.++ ..+..++..+++++..+....+... ....+++.+.+ ++.  ++.+|..++.++..++..- ++
T Consensus       191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~  268 (1049)
T 3m1i_C          191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ  268 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCc
Confidence             2223444444443 3457889999999988777665332 22345555552 222  4566666666554444320 00


Q ss_pred             ----------------------------------------------------------------------hhHHhhHHHH
Q 019679          142 ----------------------------------------------------------------------DLLSQSLLPA  151 (337)
Q Consensus       142 ----------------------------------------------------------------------~~~~~~llp~  151 (337)
                                                                                            ......+++.
T Consensus       269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  348 (1049)
T 3m1i_C          269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY  348 (1049)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence                                                                                  0001123344


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhh-----Ch---hhHHHHHHHHHHHHcccc----------------------chH
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQL-----GV---GFFDDKLGALCMQWLKDK----------------------VYS  201 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~---~~~~~~l~~~l~~~l~d~----------------------~~~  201 (337)
                      +......++..++..+++.+..+++..     ..   ..+...+++.++..+.-+                      .+.
T Consensus       349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            444445556677777777777776621     11   124456667766654210                      124


Q ss_pred             HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc--CcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhcc--
Q 019679          202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASK--  274 (337)
Q Consensus       202 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~--  274 (337)
                      .|.++..+|..++.. +++...+.+.+.+.+.+.  +.+|+.|.+++.+++.++..++..   .+...+++.+..+..  
T Consensus       429 ~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          429 LYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence            566777778777754 455556667777777775  367999999999999999887754   345667777766432  


Q ss_pred             ---CCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          275 ---DRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       275 ---d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                         |+.+.||..++.+++++++.+... .+...+++.+...+.|+++.||..|+.++..+.+..+
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence               456677778999999998776542 4456777777777888899999999999999987643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.47  E-value=4.8e-12  Score=122.16  Aligned_cols=327  Identities=11%  Similarity=0.036  Sum_probs=198.1

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC------CChHHHHHHHHHhHHHHHHhh---C--HH------H
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR------DNEAEVRIAAAGKVTKICRIL---N--PE------L   65 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~------d~~~~vR~~a~~~l~~~~~~~---~--~~------~   65 (337)
                      ..|..|+.+...+..++..++ +...+.+++.+.+.+.      ++++..|.+|+.+++.+++..   .  ..      .
T Consensus       373 d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          373 DTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             ---CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             cccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            446789999999999999987 3334567777777776      678999999999999998642   1  11      1


Q ss_pred             HHHhhhHhhHHhcCCC---cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--
Q 019679           66 AIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--  140 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--  140 (337)
                      +...+...+...++|+   ++.||..++++++.+++.+.++ ....+++.+.+.+.|+++.||..|+.++..+++...  
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~  530 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESN  530 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccc
Confidence            2222222233334555   8999999999999999987654 457788999999999999999999999999887421  


Q ss_pred             --------hhhH---HhhHHHHHHHHhcCCc-----hHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc----cc-
Q 019679          141 --------IDLL---SQSLLPAIVELAEDRH-----WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL----KD-  197 (337)
Q Consensus       141 --------~~~~---~~~llp~l~~~~~d~~-----~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l----~d-  197 (337)
                              .+.+   .+.+++.+..+++...     ......+.+++..++...+.+.  +.+.+++.+...+    ++ 
T Consensus       531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~  610 (960)
T 1wa5_C          531 TSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNP  610 (960)
T ss_dssp             SSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSC
T ss_pred             ccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence                    2222   3445555556655431     1133566777777776665432  4445555554443    33 


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHH---HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc-ChHHHHhhHHHHHH--h
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM-GSEITCSQLLPVVI--N  271 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~-~~~~~~~~l~~~l~--~  271 (337)
                      +++..+..++.+++.++...+++.   +.+.++|.+...+..........+...++.+.... +-..+...++|.+.  .
T Consensus       611 ~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~  690 (960)
T 1wa5_C          611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPN  690 (960)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGG
T ss_pred             CCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHH
Confidence            356778788999999988755432   35678888888776544444444555555554322 11113345566666  5


Q ss_pred             hccCCChhHHHHHHHHHHHHhhhhcHHHH-HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          272 ASKDRVPNIKFNVAKVLQSLIPIVDQSVV-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       272 ~l~d~~~~vr~~a~~~l~~i~~~~~~~~~-~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      .+....  .-....+.|..+....+.... .+.++..+..+..++..  ...+...++.++..++
T Consensus       691 ~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~  751 (960)
T 1wa5_C          691 VWELKG--NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLID  751 (960)
T ss_dssp             GGCCTT--THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSC
T ss_pred             HhcCCC--CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCC
Confidence            554432  222344555554432221100 02233344444444432  2566777776666543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.46  E-value=3.7e-11  Score=105.01  Aligned_cols=289  Identities=13%  Similarity=0.067  Sum_probs=201.9

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcc---cchH----------HHHHHhcCCCh--HH-----HHH-------HHHHhHHH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTR---SDVV----------PAYVRLLRDNE--AE-----VRI-------AAAGKVTK   56 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~---~~l~----------~~l~~~~~d~~--~~-----vR~-------~a~~~l~~   56 (337)
                      ++.+|..++.++..++..-+.....   .-++          +.+.+++....  .+     +|.       .|+.+|..
T Consensus        95 ~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~n  174 (458)
T 3nmz_A           95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK  174 (458)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHH
Confidence            4799999999999999766543321   1233          44555555431  12     565       78888888


Q ss_pred             HHHhhCHH----HHHHhhhHhhHHhcC-----------CCcHHHHHHHHHHHHhcCcccCh--hhH--HhhhHHHHHHhh
Q 019679           57 ICRILNPE----LAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILGK--DAT--IEQLLPIFLSLL  117 (337)
Q Consensus        57 ~~~~~~~~----~~~~~ll~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l  117 (337)
                      ++..  ++    ......++.+..++.           +.++.++..++.+|.+++..-..  ...  ....+|.+.+++
T Consensus       175 ls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL  252 (458)
T 3nmz_A          175 LSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL  252 (458)
T ss_dssp             HTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG
T ss_pred             hcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH
Confidence            8543  22    122335666666652           24578999999999999853321  112  245689999999


Q ss_pred             cCCChhHHHHHHHhHHHhHhhhch---hhH-HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhh-C-hhhH--HHHHH
Q 019679          118 KDEFPDVRLNIISKLDQVNQVIGI---DLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G-VGFF--DDKLG  188 (337)
Q Consensus       118 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~-~-~~~~--~~~l~  188 (337)
                      .+.+++++..++.+|..++..-..   ..+ ....+|.+.++ ....+..++..++..+..++... + +..+  ....+
T Consensus       253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal  332 (458)
T 3nmz_A          253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL  332 (458)
T ss_dssp             GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcH
Confidence            999999999999999998753111   222 23578888886 45667889999999999988733 1 1122  23578


Q ss_pred             HHHHHHccccch----HHHHHHHHHHHHHHHH--hChHH----HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-
Q 019679          189 ALCMQWLKDKVY----SIRDAAANNVKRLAEE--FGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-  257 (337)
Q Consensus       189 ~~l~~~l~d~~~----~vr~~a~~~l~~~~~~--~~~~~----~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-  257 (337)
                      |.+.+++.+...    .+++.|+.+|..++..  -+.+.    .....+|.+.+++.+.+..++..++.++..++.... 
T Consensus       333 ~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~  412 (458)
T 3nmz_A          333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK  412 (458)
T ss_dssp             HHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH
Confidence            999999987654    4899999999988753  12221    123578999999999999999999999999974321 


Q ss_pred             -h-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh
Q 019679          258 -S-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       258 -~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  294 (337)
                       . .......+|.+..++...+..+|..|+.+|..+...
T Consensus       413 ~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence             1 122346789999999999999999999999999865

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.8e-10  Score=104.88  Aligned_cols=328  Identities=8%  Similarity=0.047  Sum_probs=227.5

Q ss_pred             hHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HH--HHhhhHhhHHhcCC
Q 019679            5 WRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LA--IQHILPCVKELSSD   80 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~--~~~ll~~l~~l~~d   80 (337)
                      ..+|..++-.|..+...-+.. .....+.+.+.+++.+++...|+.|++.|..+...-... .+  .+.+++.+.+++++
T Consensus       308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~  387 (778)
T 3opb_A          308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS  387 (778)
T ss_dssp             GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC
Confidence            467888888888877655432 234578999999998877666999999999885432111 11  12245555566653


Q ss_pred             -CcHHHHHHHHHHHHhcCcccCh--------------------------h------h---------HHhhhHHHHHHhhc
Q 019679           81 -SSQHVRSALATVIMGMAPILGK--------------------------D------A---------TIEQLLPIFLSLLK  118 (337)
Q Consensus        81 -~~~~vr~~a~~~l~~l~~~~~~--------------------------~------~---------~~~~l~~~l~~~l~  118 (337)
                       .+..+-..++..+.++....+.                          .      .         ....++|.+..+++
T Consensus       388 ~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~  467 (778)
T 3opb_A          388 QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMH  467 (778)
T ss_dssp             TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGG
T ss_pred             CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHc
Confidence             4556778888888877653220                          0      0         01347899999999


Q ss_pred             CCChhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHHHhcCCchH---HHHHHHHHhhHhHhhhChhhHH-----HHHH
Q 019679          119 DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLG  188 (337)
Q Consensus       119 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~  188 (337)
                      ..++.+|..+++++..++..-..  ....+..+|.+..++.+....   +|..++.++..+.....+....     ...+
T Consensus       468 S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI  547 (778)
T 3opb_A          468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI  547 (778)
T ss_dssp             GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence            99999999999999999865322  223456788888887665443   8999999999887544332211     1578


Q ss_pred             HHHHHHccc-cch-------------HHHHHHHHHHHHHHHHhCh------HHH-H-hhHHHHHHHhhcCcchHHHHHHH
Q 019679          189 ALCMQWLKD-KVY-------------SIRDAAANNVKRLAEEFGP------DWA-M-QHIVPQVLEMINNPHYLYRMTIL  246 (337)
Q Consensus       189 ~~l~~~l~d-~~~-------------~vr~~a~~~l~~~~~~~~~------~~~-~-~~l~~~l~~~~~~~~~~vR~~~~  246 (337)
                      |.++++|.. +..             .-+..|+.+|..++..-++      ..+ . ...+|.+.+++.+.+..+|.+|+
T Consensus       548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~  627 (778)
T 3opb_A          548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTL  627 (778)
T ss_dssp             HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHH
Confidence            889999882 221             2277889999998875321      112 3 25889999999999999999999


Q ss_pred             HHHHHhccccCh---HHHH---h---hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--HHHH--HhhhHHHHhhhC
Q 019679          247 QAISLLAPVMGS---EITC---S---QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE--KSIRPCLVELSE  313 (337)
Q Consensus       247 ~~l~~l~~~~~~---~~~~---~---~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~--~~i~~~l~~l~~  313 (337)
                      +++..++..-..   +++.   +   .-++.+..++...+..+|.+|+.+|+.+....+.  +.+.  ...++.+..++.
T Consensus       628 elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~  707 (778)
T 3opb_A          628 ELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFA  707 (778)
T ss_dssp             HHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHh
Confidence            999999754321   2221   1   1378899999999999999999999999654332  1111  135556666777


Q ss_pred             C--CCccHHHHHHHHHHHHHH
Q 019679          314 D--PDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       314 d--~~~~vr~~a~~al~~l~~  332 (337)
                      +  .+.++|..++.++..++.
T Consensus       708 ~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          708 DQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHHHH
Confidence            7  789999999999999986

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.44  E-value=3.5e-12  Score=106.89  Aligned_cols=282  Identities=11%  Similarity=0.092  Sum_probs=165.2

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      ..+++.+.+++++++...|+.....+..+++. +++ .. -+...+.+-++|+|+.+|-.|+.+++++..    ....+.
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~  139 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA  139 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence            35788888999999999999999999888776 322 22 456677788899999999999999999986    445678


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHH
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  188 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  188 (337)
                      +.+.+.+.+.|.+|.||++|+-+...+... .++.. +.+++.+.+++.|+++.|...++..+..+.+.- . ....+++
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~-~a~~kLv  215 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R-LAVSKMI  215 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H-HHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h-HHHHHHH
Confidence            999999999999999999999999888765 34433 678899999999999999988888777776531 1 1233444


Q ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679          189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPV  268 (337)
Q Consensus       189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  268 (337)
                      +.+.+. .-.++......++.+..++..- .......+++.+..++++.+..|-..++.++..+... +.. ........
T Consensus       216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~  291 (355)
T 3tjz_B          216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSV  291 (355)
T ss_dssp             HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred             HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHH
Confidence            444321 1112333333444444333211 0122456888888899999999999999998887552 222 22334455


Q ss_pred             HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHH
Q 019679          269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  327 (337)
Q Consensus       269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al  327 (337)
                      +..++..+.+++|..|++.|..+....+.  .......-+..+..|++..++..|+..|
T Consensus       292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             HHHHHHSSSSSSHHHHHHCC---------------------------------------
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence            66677788899999999999999876543  3355677778899999999988887665

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.44  E-value=4.1e-10  Score=108.96  Aligned_cols=324  Identities=11%  Similarity=0.058  Sum_probs=193.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-H--------------
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILN-P--------------   63 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~~~~~~~-~--------------   63 (337)
                      .+.||...+.++..+++...++. |+++++.+.+.+++     +++..+..++..|..+.+.+. .              
T Consensus       116 ~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l  194 (963)
T 2x19_B          116 SKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL  194 (963)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred             CHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence            57899999999999999877755 78999999999875     366678888888888775431 0              


Q ss_pred             HHHHHhhhHhhHHhcCCCc--HHHHHHHHHHHHhcCcccChhh-HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc
Q 019679           64 ELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDA-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  140 (337)
Q Consensus        64 ~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  140 (337)
                      ....+.+++.+.+.+++.+  ..++..+++++..... .+... ....+++.+.+.+.  ++++|..++.++..+.....
T Consensus       195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~  271 (963)
T 2x19_B          195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPD  271 (963)
T ss_dssp             GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccc
Confidence            0112334555555544432  1255555555543332 11100 01233333333332  23344444444333332110


Q ss_pred             -------------------------------------------------h--------hhHHhhHHHHHHHHhcC-----
Q 019679          141 -------------------------------------------------I--------DLLSQSLLPAIVELAED-----  158 (337)
Q Consensus       141 -------------------------------------------------~--------~~~~~~llp~l~~~~~d-----  158 (337)
                                                                       .        ......+++.+.....+     
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~  351 (963)
T 2x19_B          272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP  351 (963)
T ss_dssp             GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT
T ss_pred             cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCC
Confidence                                                             0        00112233333333332     


Q ss_pred             CchHHHHHHHHHhhHhHhhhC-------h------hhHHHHHHHHHHHHcccc--------------c-hHHHHHHHHHH
Q 019679          159 RHWRVRLAIIEYIPLLASQLG-------V------GFFDDKLGALCMQWLKDK--------------V-YSIRDAAANNV  210 (337)
Q Consensus       159 ~~~~vr~~~~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~l~d~--------------~-~~vr~~a~~~l  210 (337)
                      .++.+...+++.+..+++...       +      ..+..++++.++..+..+              . ...|..+...+
T Consensus       352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L  431 (963)
T 2x19_B          352 VNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTL  431 (963)
T ss_dssp             TTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHH
Confidence            234455555555555554210       0      112334555555544211              0 13467777788


Q ss_pred             HHHHHHhChHHHHhhHHHHHHHhh----cCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHH
Q 019679          211 KRLAEEFGPDWAMQHIVPQVLEMI----NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       211 ~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                      ..++...+.+ ..+.+++.+.+.+    .+.+|+.|.+++.+++.+++.+...  .+...+++.+.. +.++++.||.++
T Consensus       432 ~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~  509 (963)
T 2x19_B          432 MYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTV  509 (963)
T ss_dssp             HHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHH
T ss_pred             HHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHH
Confidence            8888777643 4556777777776    6678999999999999999887642  244556664443 354678899999


Q ss_pred             HHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          285 AKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       285 ~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +.+++++++.++.. .+...+++.+...+.+  +.|+..|+.++..+.+..+
T Consensus       510 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~  559 (963)
T 2x19_B          510 MFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK  559 (963)
T ss_dssp             HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH
Confidence            99999999877632 4556778877776765  8899999999999987543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.44  E-value=3.6e-11  Score=116.41  Aligned_cols=325  Identities=8%  Similarity=0.032  Sum_probs=211.4

Q ss_pred             hHHHHHHHHHHHHHHHH--hCCCCcccchHHHHHHhc----------------CCChHHHHHHHHHhHHHHHHhhCHH--
Q 019679            5 WRVRYMVANQLYELCEA--VGPEPTRSDVVPAYVRLL----------------RDNEAEVRIAAAGKVTKICRILNPE--   64 (337)
Q Consensus         5 ~~vR~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~~~----------------~d~~~~vR~~a~~~l~~~~~~~~~~--   64 (337)
                      |.++..+++++......  .+.. ....+++.+.+ +                .++++++|..++.++..+...-...  
T Consensus       203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~  280 (971)
T 2x1g_F          203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY  280 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC
T ss_pred             hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc
Confidence            58899999999988874  4434 44567887776 4                1257899999999999998742211  


Q ss_pred             -HHHHhhhHhhHH-------hcCCCc---HHHHHHHHHHHHhcCcccChh-------------hHHhhhHHHHHHhhc--
Q 019679           65 -LAIQHILPCVKE-------LSSDSS---QHVRSALATVIMGMAPILGKD-------------ATIEQLLPIFLSLLK--  118 (337)
Q Consensus        65 -~~~~~ll~~l~~-------l~~d~~---~~vr~~a~~~l~~l~~~~~~~-------------~~~~~l~~~l~~~l~--  118 (337)
                       .....++|.+..       ..++.+   ..+....++.+..+++.....             .....+++.+..+..  
T Consensus       281 ~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~  360 (971)
T 2x1g_F          281 PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKP  360 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCC
Confidence             222333333322       223334   256666778777776432111             112345556666553  


Q ss_pred             ---CCChhHHHHHHHhHHHhHhhh-c------h-------hhHHhhHHHHHHHHhc---CCc------------hHHHHH
Q 019679          119 ---DEFPDVRLNIISKLDQVNQVI-G------I-------DLLSQSLLPAIVELAE---DRH------------WRVRLA  166 (337)
Q Consensus       119 ---d~~~~vr~~a~~~l~~l~~~~-~------~-------~~~~~~llp~l~~~~~---d~~------------~~vr~~  166 (337)
                         ..+++|+..++..+..+.+.. +      .       ..+...+++.+.....   |.+            ...|..
T Consensus       361 ~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~  440 (971)
T 2x1g_F          361 GIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD  440 (971)
T ss_dssp             SCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH
Confidence               347889999999888876622 1      0       1122334444444331   110            146788


Q ss_pred             HHHHhhHhHhhhChhhHHHHHHHHHHHHccc-----cchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhh-cCcc
Q 019679          167 IIEYIPLLASQLGVGFFDDKLGALCMQWLKD-----KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMI-NNPH  238 (337)
Q Consensus       167 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~-~~~~  238 (337)
                      +.+.+..++...| +...+.+.+.+.+.+..     .+|..|++++.+++.+++.....  ...+.+++.+..+. .|++
T Consensus       441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~  519 (971)
T 2x1g_F          441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN  519 (971)
T ss_dssp             HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred             HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence            8888888888777 34556677777666654     68999999999999998766432  12344555443333 2568


Q ss_pred             hHHHHHHHHHHHHhccccChH-HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC-
Q 019679          239 YLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED-  314 (337)
Q Consensus       239 ~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d-  314 (337)
                      ..+|.+++++++.+++.++.. .+...+++.++..+ |  +.|+.+|+.++..+++.++..  .+.+.++..+..+++. 
T Consensus       520 ~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~  596 (971)
T 2x1g_F          520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG  596 (971)
T ss_dssp             HHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence            999999999999999877632 45677888888888 4  789999999999999887754  3345556666565554 


Q ss_pred             -CCccHHHHHHHHHHHHHHhhh
Q 019679          315 -PDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       315 -~~~~vr~~a~~al~~l~~~~~  335 (337)
                       .+.+.+..+.++++.++...+
T Consensus       597 ~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          597 RMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTSC
T ss_pred             CCChHHHHHHHHHHHHHHHhCC
Confidence             357899999999999987654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.44  E-value=8.8e-11  Score=113.68  Aligned_cols=324  Identities=9%  Similarity=0.028  Sum_probs=185.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC------hHHHHHHHHHhHHHHHHhhC-----------HHH-
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN------EAEVRIAAAGKVTKICRILN-----------PEL-   65 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~------~~~vR~~a~~~l~~~~~~~~-----------~~~-   65 (337)
                      ...||...+.++..++....+  .|+++++.+.+.++++      ++..+..++..|..+.+.+.           .+. 
T Consensus        98 ~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l  175 (971)
T 2x1g_F           98 PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI  175 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHH
Confidence            478999999999999999877  6889999999998764      67788888888887775321           011 


Q ss_pred             --HHHhhhHhhHHhcCC---C-----cHHHHHHHHHHHHhcCc--ccChhhHHhhhHHHHHHhh----------------
Q 019679           66 --AIQHILPCVKELSSD---S-----SQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLL----------------  117 (337)
Q Consensus        66 --~~~~ll~~l~~l~~d---~-----~~~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~l----------------  117 (337)
                        ..+.+++.+.+.+++   +     ++.++..+++++..+..  ..+.. ....+++.+.. +                
T Consensus       176 ~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~  253 (971)
T 2x1g_F          176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCM  253 (971)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCC
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhcccccccccccc
Confidence              112344444333321   1     13677777777765443  22222 22233333332 1                


Q ss_pred             cCCChhHHHHH----------------------------------------------------HHhHHHhHhhh----c-
Q 019679          118 KDEFPDVRLNI----------------------------------------------------ISKLDQVNQVI----G-  140 (337)
Q Consensus       118 ~d~~~~vr~~a----------------------------------------------------~~~l~~l~~~~----~-  140 (337)
                      .+.++++|..|                                                    ++.+..+++..    . 
T Consensus       254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~  333 (971)
T 2x1g_F          254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS  333 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            01223344444                                                    44333333210    0 


Q ss_pred             --------hhhHHhhHHHHHHHHhcC-----CchHHHHHHHHHhhHhHhhh-C-------h------hhHHHHHHHHHHH
Q 019679          141 --------IDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQL-G-------V------GFFDDKLGALCMQ  193 (337)
Q Consensus       141 --------~~~~~~~llp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~-~-------~------~~~~~~l~~~l~~  193 (337)
                              .......+++.+......     .+..+...+++.+..+++.. +       .      ..+...+++.+..
T Consensus       334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~  413 (971)
T 2x1g_F          334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR  413 (971)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence                    000112233333333322     34556666666666665421 1       0      1133345555555


Q ss_pred             Hcc---cc------------chHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC-----cchHHHHHHHHHHHHhc
Q 019679          194 WLK---DK------------VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-----PHYLYRMTILQAISLLA  253 (337)
Q Consensus       194 ~l~---d~------------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~vR~~~~~~l~~l~  253 (337)
                      .+.   |.            ....|.++...+..++..+| +...+.+++.+.+.+..     ++|+.|++++.+++.++
T Consensus       414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia  492 (971)
T 2x1g_F          414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA  492 (971)
T ss_dssp             HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred             HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            442   11            12467777788887777666 44556667776666654     68999999999999999


Q ss_pred             cccChH--HHHhhHHHHHHhhc-cCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          254 PVMGSE--ITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       254 ~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      +.+...  ...+.+++.+..+. .|+++.||..++.+++++++.++.. .+...+++.+...+ |  +.|+..|+.|+..
T Consensus       493 e~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~  569 (971)
T 2x1g_F          493 EHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKE  569 (971)
T ss_dssp             TC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHH
T ss_pred             hhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHH
Confidence            887643  24455666444444 2678999999999999999887743 34566777776666 4  7899999999999


Q ss_pred             HHHhhh
Q 019679          330 KDQVMM  335 (337)
Q Consensus       330 l~~~~~  335 (337)
                      +.+..+
T Consensus       570 l~~~~~  575 (971)
T 2x1g_F          570 LCRDCQ  575 (971)
T ss_dssp             HHHHCH
T ss_pred             HHHHHH
Confidence            886543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.40  E-value=7.5e-10  Score=106.17  Aligned_cols=329  Identities=10%  Similarity=0.057  Sum_probs=206.9

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCH-----------------H
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNP-----------------E   64 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~~~~~~~~-----------------~   64 (337)
                      ..+.+|...+.++..++....|.. |+..++.+.+.++.++. ..-...+..|..+.+.+..                 +
T Consensus       102 ~~~~IrnKL~~~la~l~~~~~p~~-Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd  180 (980)
T 3ibv_A          102 EPAYISNAVQHLLTLLFLQLYPSN-WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKD  180 (980)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCccc-CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHH
Confidence            456799999999999999887765 67888888888864333 2333344445544343210                 0


Q ss_pred             HH--------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHHHHhhcCCChhHHHHHHHhHHHh
Q 019679           65 LA--------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQV  135 (337)
Q Consensus        65 ~~--------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  135 (337)
                      .+        .+.++..+....+..++.++..++++++....+.+..... ..+++.+.+++.+  +++|.+|+.++..+
T Consensus       181 ~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei  258 (980)
T 3ibv_A          181 AIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEI  258 (980)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHH
Confidence            01        1122223333333467788888999998888876654432 5677878887766  67787777776655


Q ss_pred             Hhhhch-h-------------------------------------------------------------hHHhhHHHHHH
Q 019679          136 NQVIGI-D-------------------------------------------------------------LLSQSLLPAIV  153 (337)
Q Consensus       136 ~~~~~~-~-------------------------------------------------------------~~~~~llp~l~  153 (337)
                      ...-.. +                                                             .....++|.+.
T Consensus       259 ~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL  338 (980)
T 3ibv_A          259 VNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLI  338 (980)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHH
T ss_pred             HHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHH
Confidence            433110 0                                                             01123444445


Q ss_pred             HHhcCCchHHHHHHHHHhhHhHhhh---Ch--------hhHHHHHHHHHHHHccc-------c---------chHHHHHH
Q 019679          154 ELAEDRHWRVRLAIIEYIPLLASQL---GV--------GFFDDKLGALCMQWLKD-------K---------VYSIRDAA  206 (337)
Q Consensus       154 ~~~~d~~~~vr~~~~~~l~~l~~~~---~~--------~~~~~~l~~~l~~~l~d-------~---------~~~vr~~a  206 (337)
                      ....++++.+-..++..+..+....   +.        ..+...+++.+...+.-       .         ..+.|+..
T Consensus       339 ~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l  418 (980)
T 3ibv_A          339 RYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKL  418 (980)
T ss_dssp             HHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHH
T ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHH
Confidence            5555555655555555555444332   11        12334455555544421       1         12467666


Q ss_pred             HHHHHHHHHHhChHHHHh----hHHHHHHHhhc---CcchHHHHHHHHHHHHhccccChH--------HHHhhHHHHHHh
Q 019679          207 ANNVKRLAEEFGPDWAMQ----HIVPQVLEMIN---NPHYLYRMTILQAISLLAPVMGSE--------ITCSQLLPVVIN  271 (337)
Q Consensus       207 ~~~l~~~~~~~~~~~~~~----~l~~~l~~~~~---~~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~l~~~l~~  271 (337)
                      . .+-.....+|++.+.+    .+.+.+.+.+.   +.+|+.+++++.+++.+++.+...        ...+.+++++..
T Consensus       419 ~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~  497 (980)
T 3ibv_A          419 K-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL  497 (980)
T ss_dssp             H-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred             H-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence            6 6666666778776666    55666666552   457999999999999999887531        123467788887


Q ss_pred             hcc-----CCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHh--hhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          272 ASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVE--LSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       272 ~l~-----d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~--l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      ++.     ++++.||..++.++++.++.+... .+...+++.+..  .+.+++++||..|+.++..+.+..+
T Consensus       498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            765     889999999999999999988642 223344444444  4457888999999999999887654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.38  E-value=1.5e-10  Score=98.16  Aligned_cols=253  Identities=13%  Similarity=0.055  Sum_probs=177.4

Q ss_pred             HHHHHHHHHhHHHHHHhhC--HHHHHHhhhHhhHHhcC-----------CCcHHHHHHHHHHHHhcCcccC--hhhH--H
Q 019679           44 AEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALATVIMGMAPILG--KDAT--I  106 (337)
Q Consensus        44 ~~vR~~a~~~l~~~~~~~~--~~~~~~~ll~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~~--~~~~--~  106 (337)
                      ......|+.+|..++..-.  ........+|.+..++.           ..++.+|..++.+|.+++..-.  +...  .
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            3445566777777764310  01122234555555542           2357899999999999985332  1112  2


Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhH-HhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhC--
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLG--  179 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~--  179 (337)
                      ...+|.+.+++.+.+++++..++.+|..++..-..   +.+ ....+|.+.++ ....+..++..++..+..++....  
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            35699999999999999999999999999763111   222 23568888886 466778899999999998887331  


Q ss_pred             hhhH--HHHHHHHHHHHccccch----HHHHHHHHHHHHHHHHh--ChHH---H-HhhHHHHHHHhhcCcchHHHHHHHH
Q 019679          180 VGFF--DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPDW---A-MQHIVPQVLEMINNPHYLYRMTILQ  247 (337)
Q Consensus       180 ~~~~--~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~--~~~~---~-~~~l~~~l~~~~~~~~~~vR~~~~~  247 (337)
                      +..+  ....+|.+.+++.+.+.    .+++.|+.+|..++..+  +.+.   + ....+|.+.+++.+.+..++..++.
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            1122  24578999999987654    58999999999887531  2221   1 2357899999999999999999999


Q ss_pred             HHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          248 AISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       248 ~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ++..++.....   .......+|.|..++.+.+..+|..|+.+|..+...-+
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999843211   12234578999999999999999999999999987543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.38  E-value=3.2e-09  Score=77.99  Aligned_cols=216  Identities=17%  Similarity=0.169  Sum_probs=154.3

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH-hcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD  185 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  185 (337)
                      +.++..+.+++.|.-+.|+++|+..+..+.+... +.+ ..++..+..+ -+++....-...+..++.++..-+.  ...
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~-el~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE-DLY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG-GGH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH-HHH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence            4566777777777777788888877777776543 211 1222222222 3455555666777777777765332  234


Q ss_pred             HHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhH
Q 019679          186 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL  265 (337)
Q Consensus       186 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  265 (337)
                      .++|+++.-..-..+..|-....+|+.+.... +. ....++.-+..++.+++..-|.+++.+++.++... . .+..-+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran-P~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~-~yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-PM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-F-KYVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-HH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-H-HHHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-hH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-c-cccCcc
Confidence            58888888888788899999999999998865 33 35567778888999999999999999999877542 2 245678


Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      +|-+..+|.|.+.-||..++.+|..++..-+  .+...+...+ .=++|++..|...+.++|+.+.-.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl-~e~~D~S~lv~~~V~egL~rl~l~  247 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRL-EELNDTSSLVNKTVKEGISRLLLL  247 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHH-HHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHH-HHhcCcHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999986533  2333344333 346888999999999999987643

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.38  E-value=7.9e-12  Score=107.39  Aligned_cols=256  Identities=12%  Similarity=0.085  Sum_probs=173.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      +...+..-+-|+.|++|..|+.+|..+.+..+...-..        -..+.+-.+|..++-++..++...++.       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            67777777789999999999999999988765532110        112225577777777777777655521       


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  190 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  190 (337)
                               .-.-||+.++++++.+ ..++.+   -.++-.+......+.|++|++.+-.+..+...+..   .+.+++.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                     1257999999999999 777655   23444444555888999999988877777333332   5789999


Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcc--hHHHHHHHHHHHHhccccChHHHHhhHHHH
Q 019679          191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSEITCSQLLPV  268 (337)
Q Consensus       191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~  268 (337)
                      ++..|.|.+..||..|+.+|..++   .++ ..+.++..+++++.+-+  ..---..+..+..+...-......+.++|-
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            999999999999999999999887   222 24456677777766421  111112233333332211111112388999


Q ss_pred             HHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679          269 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ  328 (337)
Q Consensus       269 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~  328 (337)
                      +..++..+..+||.++.+++..+.   ..    ..+.-.+.+++-+++.+|+..+.++-.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL---~~----~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS---EE----SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC---CH----HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH---hh----hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999999999999998886   11    222233345666788899988887764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.36  E-value=3.7e-10  Score=109.30  Aligned_cols=326  Identities=11%  Similarity=0.119  Sum_probs=209.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~   78 (337)
                      +.+|+.|.+++.+++.++..+..+.  ....+++.+.++ .++++.||..++.+++.+.+.+... .+...+++.+...+
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l  538 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL  538 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence            4689999999999999998776533  123455544433 3468889999999999999876532 45566777777777


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcC--CChhHHHHHHHhHHHhHhhhchhh---HHhhHHHH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPA  151 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~---~~~~llp~  151 (337)
                      ++  +.|+..|+.++..+++.++...  ..+.++..+..++..  -+...|..++++++.++...+.+.   +.+.+++.
T Consensus       539 ~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~  616 (963)
T 2x19_B          539 GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISP  616 (963)
T ss_dssp             TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            66  7899999999999987655332  235566666666664  357899999999999987765322   22344444


Q ss_pred             HHHHh----cC-CchHHHH---HHHHHhhHhHhhhCh------------------------hhHHHHHHHHHHHHccc--
Q 019679          152 IVELA----ED-RHWRVRL---AIIEYIPLLASQLGV------------------------GFFDDKLGALCMQWLKD--  197 (337)
Q Consensus       152 l~~~~----~d-~~~~vr~---~~~~~l~~l~~~~~~------------------------~~~~~~l~~~l~~~l~d--  197 (337)
                      +.+.+    +. .+...+.   ..+++++.++..++.                        ..+.+.+.|.+...+..  
T Consensus       617 l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  696 (963)
T 2x19_B          617 YIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL  696 (963)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence            43332    22 2344443   455666666665542                        11455677777666643  


Q ss_pred             cchHHHHHHHHHHHHHHHHhChHH--HHhhHHHHHHHhhcC-cchHHHHHHHHHHHHhccccChH-----H---HHhhHH
Q 019679          198 KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSE-----I---TCSQLL  266 (337)
Q Consensus       198 ~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~~~~-~~~~vR~~~~~~l~~l~~~~~~~-----~---~~~~l~  266 (337)
                      .+..+.+.++..++.+...+|.+.  +.+.+++.+...+.. +..    ..+..++.+...++.+     .   +.+.++
T Consensus       697 ~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~  772 (963)
T 2x19_B          697 NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHFPPIEALFLLVT  772 (963)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            356899999999999998887542  233334443333332 111    2444455554422211     1   122333


Q ss_pred             HHHHhhcc-C--CChhHHHHHHHHHHHHhhhhcHHHH-----HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          267 PVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       267 ~~l~~~l~-d--~~~~vr~~a~~~l~~i~~~~~~~~~-----~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      ..++..+. +  ..+++|......+..+...+....+     ...+++.+...++..+..+...+.+.+..+....
T Consensus       773 ~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          773 SVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             HHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence            33333333 2  4689999999999999877654321     4566667777777888999999999998887653

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2.5e-10  Score=104.03  Aligned_cols=302  Identities=12%  Similarity=0.087  Sum_probs=214.2

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hhHH
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DATI  106 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~  106 (337)
                      +..+|.+.+.+.+  ..+|..|+-.|.++....... .-...+.+.+.+.+.+++...|..+++.|..+...... +...
T Consensus       295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~  372 (778)
T 3opb_A          295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIR  372 (778)
T ss_dssp             HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHH
T ss_pred             HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3567788887764  588999999999988754322 12244777777777776666699999999998753221 1111


Q ss_pred             --hhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhhhch--------------------h------------h--------
Q 019679          107 --EQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI--------------------D------------L--------  143 (337)
Q Consensus       107 --~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~--------------------~------------~--------  143 (337)
                        ...++.+.+++++ .+..+...++..+..+......                    +            .        
T Consensus       373 ~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~  452 (778)
T 3opb_A          373 SNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY  452 (778)
T ss_dssp             HCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHH
Confidence              4567888888885 6678888888888877654220                    0            0        


Q ss_pred             -HHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchH---HHHHHHHHHHHHHHHh
Q 019679          144 -LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYS---IRDAAANNVKRLAEEF  217 (337)
Q Consensus       144 -~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~~~~~~  217 (337)
                       +...++|.+..++.+.+..+|..++..+..++..-...  ......++.+++++.+....   +|..|+.+|.++....
T Consensus       453 l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~  532 (778)
T 3opb_A          453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT  532 (778)
T ss_dssp             TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence             11237888899999999999999999999998653211  23345778888988876554   8999999999998655


Q ss_pred             ChHHHH-----hhHHHHHHHhhcC-cch-------------HHHHHHHHHHHHhccccCh------H-HHH-hhHHHHHH
Q 019679          218 GPDWAM-----QHIVPQVLEMINN-PHY-------------LYRMTILQAISLLAPVMGS------E-ITC-SQLLPVVI  270 (337)
Q Consensus       218 ~~~~~~-----~~l~~~l~~~~~~-~~~-------------~vR~~~~~~l~~l~~~~~~------~-~~~-~~l~~~l~  270 (337)
                      .+....     ...+|.+.+++.. +..             ..+..|+.++..++..-+.      . ... ...+|.+.
T Consensus       533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~  612 (778)
T 3opb_A          533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE  612 (778)
T ss_dssp             CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence            444321     2578899999872 221             3377899999999876532      1 223 25789999


Q ss_pred             hhccCCChhHHHHHHHHHHHHhhhhcH--HHHH-------HhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          271 NASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVE-------KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       271 ~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~-------~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      .++.+++..||++|+.++..++..-..  ..+.       ..-++.|..+++..+.++|..|+.||..+..
T Consensus       613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts  683 (778)
T 3opb_A          613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT  683 (778)
T ss_dssp             HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999999864332  1111       1126677788888999999999999999864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.35  E-value=2.6e-10  Score=96.61  Aligned_cols=250  Identities=12%  Similarity=-0.015  Sum_probs=178.8

Q ss_pred             HHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcC-----------CChhHHHHHHHhHHHhHhhhc-h-hhH--Hh
Q 019679           84 HVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD-----------EFPDVRLNIISKLDQVNQVIG-I-DLL--SQ  146 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d-----------~~~~vr~~a~~~l~~l~~~~~-~-~~~--~~  146 (337)
                      .....|+.+|++++..-.  +.......++.+..++..           .++.++..|+.+|..++..-. . ..+  ..
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            445577888888875311  111224567778887731           247899999999999975422 1 222  23


Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hh-HHHHHHHHHHHH-ccccchHHHHHHHHHHHHHHHHh-Ch-
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEF-GP-  219 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~-~~-  219 (337)
                      ..+|.|.+++.+.+..++..++..|..++..-+.   .. .....+|.++++ ++..+..+++.++.++..++... +. 
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            4699999999999999999999999999764211   11 223468888886 46678899999999999887522 11 


Q ss_pred             HHH--HhhHHHHHHHhhcCcch----HHHHHHHHHHHHhccc--cChH---H-HHhhHHHHHHhhccCCChhHHHHHHHH
Q 019679          220 DWA--MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE---I-TCSQLLPVVINASKDRVPNIKFNVAKV  287 (337)
Q Consensus       220 ~~~--~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~--~~~~---~-~~~~l~~~l~~~l~d~~~~vr~~a~~~  287 (337)
                      ..+  ....+|.+.+++.+.+.    .++..++.++..++..  .+.+   . .....+|.+..++.+.+..++..|+.+
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            122  34688999999986543    5888888888888742  1111   1 123478999999999999999999999


Q ss_pred             HHHHhhhhc-HH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          288 LQSLIPIVD-QS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       288 l~~i~~~~~-~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      |..++..-. ..  ....-.+|.|..++.+++.++|..|+.+|..+...
T Consensus       287 L~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          287 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999984322 11  23345789999999999999999999999999864

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.33  E-value=2.4e-10  Score=109.48  Aligned_cols=329  Identities=11%  Similarity=0.128  Sum_probs=212.0

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHHHh-----hhHhhHH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAIQH-----ILPCVKE   76 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-~~~~~~-----ll~~l~~   76 (337)
                      +..++..+.++++....-.+.... .+.+++.+.+++.+  +.+|.+|+++|..+...-.+ +...+.     +-+.+..
T Consensus       206 ~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~  283 (980)
T 3ibv_A          206 NYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK  283 (980)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence            456677777777776654443322 24688899999976  89999999999998875433 221111     1222333


Q ss_pred             hcC-CCcHHHHHHHHHHHHhcCcc------cC----hh------hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh
Q 019679           77 LSS-DSSQHVRSALATVIMGMAPI------LG----KD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  139 (337)
Q Consensus        77 l~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  139 (337)
                      +.. +.+..+++..++.+..+++.      .+    .+      .....+++.++.++.+++.+|-..++..+..+....
T Consensus       284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~  363 (980)
T 3ibv_A          284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL  363 (980)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            332 56666776666666544321      11    00      223568899999999999999888888777766543


Q ss_pred             ch--------h---hHHhhHHHHHHHHh---cCCch-------------HHHHHHHHHhhHhHhhhChhhHHH----HHH
Q 019679          140 GI--------D---LLSQSLLPAIVELA---EDRHW-------------RVRLAIIEYIPLLASQLGVGFFDD----KLG  188 (337)
Q Consensus       140 ~~--------~---~~~~~llp~l~~~~---~d~~~-------------~vr~~~~~~l~~l~~~~~~~~~~~----~l~  188 (337)
                      ..        +   .+...+++.+....   .|.+|             ..|+... .+-..+...|++.+.+    .+.
T Consensus       364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~  442 (980)
T 3ibv_A          364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT  442 (980)
T ss_dssp             HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence            21        1   11223333333222   11111             3566666 5566666677777766    566


Q ss_pred             HHHHHHcc---ccchHHHHHHHHHHHHHHHHhChH--------HHHhhHHHHHHHhhc-----CcchHHHHHHHHHHHHh
Q 019679          189 ALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPD--------WAMQHIVPQVLEMIN-----NPHYLYRMTILQAISLL  252 (337)
Q Consensus       189 ~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l~~l  252 (337)
                      +.+.+.+.   ..+|..+++++.+++.+++.+...        ...+.+++.+..+++     ++++.+|.++++.+++.
T Consensus       443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry  522 (980)
T 3ibv_A          443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY  522 (980)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            66666663   567999999999999998876421        123457777777765     78899999999999999


Q ss_pred             ccccCh-HHHHhhHHHHHHh--hccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCC---C---------
Q 019679          253 APVMGS-EITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED---P---------  315 (337)
Q Consensus       253 ~~~~~~-~~~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d---~---------  315 (337)
                      ++++.. ..+.+.+++.++.  .+.+++..||.+|+.++..+++.+++.  .+.+.++..+..++.-   +         
T Consensus       523 s~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~  602 (980)
T 3ibv_A          523 ASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVP  602 (980)
T ss_dssp             GGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred             HHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence            988753 2356677788888  888999999999999999999887653  1123344444333321   1         


Q ss_pred             ---------CccHHHHHHHHHHHHHHhhh
Q 019679          316 ---------DVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       316 ---------~~~vr~~a~~al~~l~~~~~  335 (337)
                               ..+=+....+|++.+.+..+
T Consensus       603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          603 TLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             CHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             chhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence                     11247788999999987764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.33  E-value=8.9e-11  Score=93.90  Aligned_cols=181  Identities=13%  Similarity=0.159  Sum_probs=140.3

Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH--HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChh------hH
Q 019679           34 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------AT  105 (337)
Q Consensus        34 ~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~--~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~------~~  105 (337)
                      .+...+.+.+..-|..+++.|....+..+.+.+  .+.+++.+.-.+-|+|+.|-..+++.+..+...+++.      ..
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            444555677889999999998887765333221  1223443333345889999999999988876544332      12


Q ss_pred             HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHH
Q 019679          106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  185 (337)
Q Consensus       106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  185 (337)
                      ...++|.+.+-+.|+...||..+-..+..+.+..++    +.+++.+.+.+++++|++|..++..+..+.+..|...  .
T Consensus       130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~  203 (266)
T 2of3_A          130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--L  203 (266)
T ss_dssp             HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--G
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--c
Confidence            357899999999999999999999999888877665    4577788888899999999999999999999998763  3


Q ss_pred             HHH---HHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          186 KLG---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       186 ~l~---~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      ..+   |.+.++++|.+.+||.+|++++..+....|..
T Consensus       204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence            467   88999999999999999999999999888765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.32  E-value=1.1e-09  Score=106.77  Aligned_cols=330  Identities=8%  Similarity=0.010  Sum_probs=210.6

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-CHH-----H-H---HHhhhH
Q 019679            4 SWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPE-----L-A---IQHILP   72 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~-~~~-----~-~---~~~ll~   72 (337)
                      +..+|..+.+++.......+... ..+.+++.+.+.+. .++.+|..++.++..+...- ++.     . +   ...++.
T Consensus       208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~  286 (1049)
T 3m1i_C          208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ  286 (1049)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence            35577777777776654443221 12356666663222 27899999999999988652 221     1 0   011222


Q ss_pred             hhHH--------------hcCCCcHHHHHHHHHHHHhcCcccCh--------hhHHhhhHHHHHHhhcCCChhHHHHHHH
Q 019679           73 CVKE--------------LSSDSSQHVRSALATVIMGMAPILGK--------DATIEQLLPIFLSLLKDEFPDVRLNIIS  130 (337)
Q Consensus        73 ~l~~--------------l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d~~~~vr~~a~~  130 (337)
                      .+..              ..+|.++.+....++.+..+++....        ......+++.+......++.+++..++.
T Consensus       287 ~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~le  366 (1049)
T 3m1i_C          287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLD  366 (1049)
T ss_dssp             HHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            2211              12455667777777777665532111        1122456777777777778899999998


Q ss_pred             hHHHhHhhh----c-hh---hHHhhHHHHHHHHh---cCC-------------------chHHHHHHHHHhhHhHhhhCh
Q 019679          131 KLDQVNQVI----G-ID---LLSQSLLPAIVELA---EDR-------------------HWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       131 ~l~~l~~~~----~-~~---~~~~~llp~l~~~~---~d~-------------------~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      -+..+.+.+    . ..   .+...+++.+....   .|.                   .|..|..+..++..++... .
T Consensus       367 fw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~  445 (1049)
T 3m1i_C          367 YWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-V  445 (1049)
T ss_dssp             HHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-H
Confidence            888887732    1 11   12233444444332   111                   1245767777888887544 3


Q ss_pred             hhHHHHHHHHHHHHcc--ccchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhc-----CcchHHHHHHHHHHH
Q 019679          181 GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAIS  250 (337)
Q Consensus       181 ~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l~  250 (337)
                      ....+.+.+.+.+.+.  ..+|..|++++.+++.++...+..   .+...+++.+..+..     ++...+|..++.+++
T Consensus       446 ~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg  525 (1049)
T 3m1i_C          446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG  525 (1049)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence            3455666777766665  468999999999999887665443   224556666655432     345667777999999


Q ss_pred             HhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH----------HHHhhhHHHHhhhCCCCccH
Q 019679          251 LLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKSIRPCLVELSEDPDVDV  319 (337)
Q Consensus       251 ~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----------~~~~i~~~l~~l~~d~~~~v  319 (337)
                      +.++.+.. ..+...+++.++..+.|+++.||.+|+.++..+++.++...          +.+.++..+..+..+.+.+-
T Consensus       526 ry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~  605 (1049)
T 3m1i_C          526 QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQ  605 (1049)
T ss_dssp             HCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence            88876542 24567788889999999999999999999999999877542          24555655666666666666


Q ss_pred             HHHHHHHHHHHHHhhh
Q 019679          320 RFFATQALQSKDQVMM  335 (337)
Q Consensus       320 r~~a~~al~~l~~~~~  335 (337)
                      +....++++.+++..+
T Consensus       606 ~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          606 VHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            7788899998887665

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.32  E-value=3.4e-11  Score=99.28  Aligned_cols=181  Identities=11%  Similarity=0.046  Sum_probs=80.9

Q ss_pred             HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHH-------hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---
Q 019679          113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---  182 (337)
Q Consensus       113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-------~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---  182 (337)
                      +.+-+.++++..|..++..+..+..........       ..+.+.+...+.|.+..+...+++++..++..++...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            444455555555555555555544433322211       1123344444555555555555555555555554431   


Q ss_pred             -----HHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcccc
Q 019679          183 -----FDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  256 (337)
Q Consensus       183 -----~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~  256 (337)
                           +...++|.++. .+.|....+|..+..++..++...+.   ...++..+...+++.++.+|..++.++..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 11233444433 24555555555555555444432221   1234445555555555555555555555554444


Q ss_pred             ChHH-----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          257 GSEI-----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       257 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      |...     ....+++.+..++.|.++.||.+|..++..+...+|
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            4321     122234444455555555555555555555555554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.31  E-value=7.4e-11  Score=97.23  Aligned_cols=185  Identities=11%  Similarity=0.086  Sum_probs=139.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA  104 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~-------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~  104 (337)
                      +| +.+-+.+.+|..|..|++.+..+....+....       ...+.+.+++.+.|+|..|...+++++..++...+...
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            55 56888899999999999999988776443321       12356778889999999999999999998887655321


Q ss_pred             --------HHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhH
Q 019679          105 --------TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  175 (337)
Q Consensus       105 --------~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  175 (337)
                              ....++|.+.+ .+.|..+.+|..+..++..++...+..   ..+++.+...++++++++|..++.++..+.
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence                    23456777665 478999999999999998887654432   335666777889999999999999999999


Q ss_pred             hhhChhh-----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          176 SQLGVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       176 ~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      ..+|...     ..+.+++.+..++.|.++.||.+|...++.+...+|..
T Consensus       168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            8887543     33456777888999999999999999999999888754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.31  E-value=7.2e-10  Score=88.67  Aligned_cols=181  Identities=15%  Similarity=0.111  Sum_probs=137.1

Q ss_pred             HHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh-----hH-H
Q 019679          113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----FF-D  184 (337)
Q Consensus       113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~-----~~-~  184 (337)
                      +...+-+.+..-|..++..|....+....+.+  .+.+++-+.-.+.|++..+-..+++.+..+...++..     .+ .
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea  130 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV  130 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            33444455666666666666665543222211  1224444444455888888888888888887666332     11 3


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  264 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~  264 (337)
                      ..++|.++.-+.|....||+.+-..+..+...+++.    .+++.+.+.+++.||++|..++..++.+.+..|..  ...
T Consensus       131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~  204 (266)
T 2of3_A          131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLK  204 (266)
T ss_dssp             HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGG
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccc
Confidence            578999999999999999999999998888776654    57788888999999999999999999998888865  245


Q ss_pred             HH---HHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH
Q 019679          265 LL---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  299 (337)
Q Consensus       265 l~---~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  299 (337)
                      .+   |.+.+++.|++..||.+|+.++..+..+.|...
T Consensus       205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            67   999999999999999999999999999988764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.30  E-value=5e-09  Score=76.97  Aligned_cols=215  Identities=16%  Similarity=0.196  Sum_probs=163.5

Q ss_pred             HHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchhhHH
Q 019679           67 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLS  145 (337)
Q Consensus        67 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~  145 (337)
                      .+.++..+..++.|.-|.||+.++..+..+++..++  ..+.++.-+..+++ ++.-..-....+++|.++.. .++.+ 
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-
Confidence            345677778899999999999999999999986653  23444445555543 55556767888999999875 44444 


Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhh
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH  225 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  225 (337)
                      ..+.|.+..-..-.+++.|......+..++...+.  ....+..-+..++++++..-|-+|++.++.++.. +.. +...
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~-yv~P  181 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK-YVNP  181 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THH-HHGG
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Ccc-ccCc
Confidence            66778887766666888999999999998876432  2344666677889999988899999888876543 223 4566


Q ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHh
Q 019679          226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  292 (337)
Q Consensus       226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  292 (337)
                      .+|.+..++.|.+.-||..++++++.++..-.+   ...++.-.+.-+.|++..|...+...|+.+.
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875433   3455566667789999999999998888875

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.30  E-value=6.7e-11  Score=101.77  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCCCCccc-----chHHHHHHhc---------CCC-hHHHHHHHHHhHHHHHHhhCHHH
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGPEPTRS-----DVVPAYVRLL---------RDN-EAEVRIAAAGKVTKICRILNPEL   65 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~~~~~~-----~l~~~l~~~~---------~d~-~~~vR~~a~~~l~~~~~~~~~~~   65 (337)
                      +|++|.+|+.++-++.++.+..|....+.     .+.--+...+         +|. -.-||++++++|+.+ .+++++ 
T Consensus       184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-  261 (800)
T 3oc3_A          184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-  261 (800)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-
T ss_pred             cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-
Confidence            68999999999999999999887432111     1111111111         110 133555555555555 444433 


Q ss_pred             HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhH
Q 019679           66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  136 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  136 (337)
                        ..++..+......+.|.||..++-.+..+...+..   .+.+++.+...++|.+++||..|+.++.-++
T Consensus       262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA  327 (800)
T 3oc3_A          262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP  327 (800)
T ss_dssp             --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred             --HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence              11112111233444555555555555544222221   2444455555555555555555555554444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.29  E-value=3e-10  Score=106.75  Aligned_cols=236  Identities=13%  Similarity=0.208  Sum_probs=184.6

Q ss_pred             HHHHHHHHHHHHHhCCCCc-cc---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC-cH
Q 019679            9 YMVANQLYELCEAVGPEPT-RS---DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQ   83 (337)
Q Consensus         9 ~~~~~~l~~~~~~~~~~~~-~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~-~~   83 (337)
                      ..++.+++.++...+.... .+   .++|.+.....|....||.+|..+...+...++++.. ..++|.+...+.+. .|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw  148 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKW  148 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccch
Confidence            5678888888877765322 22   4679999999999999999999999999999999877 67888777766554 69


Q ss_pred             HHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCch
Q 019679           84 HVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW  161 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~  161 (337)
                      ..+..++.++..+++..+...  ...+++|.+.+.+.|..++|..++..++..++..++..++ ...+|.+.+.+.+++.
T Consensus       149 ~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~  227 (986)
T 2iw3_A          149 QEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE  227 (986)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh
Confidence            999999999999998664332  2368999999999999999999999999999999998777 6788999999988844


Q ss_pred             HHHHHHHHHhhHhHhh-----hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH----HHHhhHHHHHHH
Q 019679          162 RVRLAIIEYIPLLASQ-----LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLE  232 (337)
Q Consensus       162 ~vr~~~~~~l~~l~~~-----~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~  232 (337)
                       |-.+    +..++..     ... .....+.|++...|.+.+..++..++..+..+++.....    .+.+.++|-+..
T Consensus       228 -~~~~----~~~l~~~tfv~~v~~-~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~  301 (986)
T 2iw3_A          228 -VPET----VHLLGATTFVAEVTP-ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS  301 (986)
T ss_dssp             -HHHH----HHHHTTCCCCSCCCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred             -hHHH----HHHhhcCeeEeeecc-hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence             3332    3333322     122 235678999999999999999999999999999877532    245667777766


Q ss_pred             hhcC-cchHHHHHHHHHHHHh
Q 019679          233 MINN-PHYLYRMTILQAISLL  252 (337)
Q Consensus       233 ~~~~-~~~~vR~~~~~~l~~l  252 (337)
                      .... .++.+|..+-.++..+
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHH
T ss_pred             HhhccCCHHHHHHHHHHHHHH
Confidence            5543 4588998888887777

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.27  E-value=6.1e-10  Score=91.87  Aligned_cols=172  Identities=17%  Similarity=0.137  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhc
Q 019679          162 RVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMIN  235 (337)
Q Consensus       162 ~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~  235 (337)
                      .-|..++..|..++...+..  ......+|.++. +|+++++.||+.|+.+++.++..-..  + .+....+|.+..++.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            35666666666666544221  112235677888 89999999999999999998753211  1 123457888888887


Q ss_pred             -CcchHHHHHHHHHHHHhccccCh--H-HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHH
Q 019679          236 -NPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCL  308 (337)
Q Consensus       236 -~~~~~vR~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l  308 (337)
                       +++..+|..++++++.++.....  . +.....+|.+..++.+++..+|..|+.+|+.++..-..   .....-++|.|
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             45788999999999998764432  2 22346888999999988999999999999998765221   23345688888


Q ss_pred             HhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          309 VELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       309 ~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ..++..++..||..+..+|+.+...
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhC
Confidence            8888888999999999999988764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.27  E-value=1.1e-09  Score=90.25  Aligned_cols=224  Identities=12%  Similarity=0.059  Sum_probs=154.0

Q ss_pred             hhhHHHHHHhhcCCC------------hhHHHHHHHhHHHhHhhhch--hhHHhhHHHHHHH-HhcCCchHHHHHHHHHh
Q 019679          107 EQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI  171 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~-~~~d~~~~vr~~~~~~l  171 (337)
                      .+.++.....+.|+.            .+-|..|+..|..+++....  .......+|.+.. ++++++..+|..++.++
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L  106 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLI  106 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            445566666666542            24667777777777765432  1222346788888 89999999999999999


Q ss_pred             hHhHhhhCh---hhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhCh--H-HHHhhHHHHHHHhhcCcchHHHHH
Q 019679          172 PLLASQLGV---GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP--D-WAMQHIVPQVLEMINNPHYLYRMT  244 (337)
Q Consensus       172 ~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~-~~~~~l~~~l~~~~~~~~~~vR~~  244 (337)
                      +.+++.-..   .......+|.++.+|++ ++..+|..|+.+|+.++....+  + ......+|.+..++++++..+|..
T Consensus       107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~  186 (296)
T 1xqr_A          107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK  186 (296)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence            999865321   12233578888888884 5789999999999998754322  1 223468899999999999999999


Q ss_pred             HHHHHHHhccccC---hHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---------HHHHhhhHHHHhhh
Q 019679          245 ILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS  312 (337)
Q Consensus       245 ~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---------~~~~~i~~~l~~l~  312 (337)
                      +++++..++....   ........+|.+..++..++..||..++.+|+.+.......         .+...+-+.+..+.
T Consensus       187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq  266 (296)
T 1xqr_A          187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQ  266 (296)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHcc
Confidence            9999999875422   12234468899999999999999999999999998763221         01222333333333


Q ss_pred             -CCCCccHHHHHHHHHHHH
Q 019679          313 -EDPDVDVRFFATQALQSK  330 (337)
Q Consensus       313 -~d~~~~vr~~a~~al~~l  330 (337)
                       ++...+++..+.+.+..+
T Consensus       267 ~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          267 QHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             TCGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH
Confidence             233466777777666654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.23  E-value=8.8e-11  Score=98.45  Aligned_cols=272  Identities=13%  Similarity=0.030  Sum_probs=151.2

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCc
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS   82 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~   82 (337)
                      ++...|+.+--.+..+++. .++..  -....+.+-++|+|+-+|-.|+.+++.+...    .+.+.+.+.+++.+.|++
T Consensus        80 ~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l~~~lk~~L~d~~  152 (355)
T 3tjz_B           80 NDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAIERYMKQAIVDKV  152 (355)
T ss_dssp             CCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHHHHHHHHHcCCCC
Confidence            4567788887788777766 33332  5688999999999999999999999987543    345678899999999999


Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchH
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR  162 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~  162 (337)
                      +.||+.|+-+...+....++ . .+.+++.+.+++.|.++.|...|+..+..+.+.- .. ....+++.+.+. .-.++-
T Consensus       153 pyVRk~A~l~~~kL~~~~pe-~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv~~l~~~-~l~~~~  227 (355)
T 3tjz_B          153 PSVSSSALVSSLHLLKCSFD-V-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMISKFTRH-GLKSPF  227 (355)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH-H-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHHHHHHSS-CCSCHH
T ss_pred             HHHHHHHHHHHHHHhccCHH-H-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHHHHHhcC-CCcChH
Confidence            99999999999998876553 2 3568889999999999999988888888886531 11 123344443321 111233


Q ss_pred             HHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHH
Q 019679          163 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYR  242 (337)
Q Consensus       163 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR  242 (337)
                      .....+..+..+...- .......+++.+...++..++.|...|++++-.+... +.. ......+.+..++.+++..+|
T Consensus       228 ~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLss~d~nir  304 (355)
T 3tjz_B          228 AYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCSSPKAALR  304 (355)
T ss_dssp             HHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSH
T ss_pred             HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHcCCCchHH
Confidence            3333444443333221 0123457888999999999999999999999887552 222 223344556666777777899


Q ss_pred             HHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH
Q 019679          243 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  291 (337)
Q Consensus       243 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  291 (337)
                      ..++..+..+......  .....-..+..+++|++..++.-|+.+|-.-
T Consensus       305 yvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt  351 (355)
T 3tjz_B          305 YAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT  351 (355)
T ss_dssp             HHHHHCC------------------------------------------
T ss_pred             HHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence            9999999888764432  2334556778899999999999888777554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.22  E-value=1.7e-09  Score=82.77  Aligned_cols=183  Identities=13%  Similarity=0.064  Sum_probs=110.1

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-hh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA  104 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~  104 (337)
                      +..+..+..++.|.|+.++..++.++..+.+..+..   ...+.++|-+..++.+++.+|---|+++++.+.+..+- +.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            345666777777777777777777777777765443   23455666666677777777777777777776654331 22


Q ss_pred             HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHH
Q 019679          105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  184 (337)
Q Consensus       105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  184 (337)
                      ....+...+...+.+.++-.+..++..++.+ +...   ..+.+...+.+++.+++.+++.+++..+-.++..-+.....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            3455666666666666666677776666666 2211   12445555555556666666666666666666555433333


Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      +.+..-+-.+++.+++.+++-|+..+..+..
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            3344445555666666666666666655543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.21  E-value=2.2e-08  Score=96.27  Aligned_cols=330  Identities=8%  Similarity=0.020  Sum_probs=208.8

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHhHHHHHHh-h-CH-HHHH-------Hhhh
Q 019679            4 SWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTKICRI-L-NP-ELAI-------QHIL   71 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~~~~~-~-~~-~~~~-------~~ll   71 (337)
                      +..+...+.++++....-++... ..+.+++.+. +++.  +++.|..|+++|..+... . ++ ..+.       +.++
T Consensus       208 ~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l  285 (1023)
T 4hat_C          208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTL  285 (1023)
T ss_dssp             SCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH
Confidence            34556667777777665444432 2346888888 8875  578999999999999873 2 12 0111       1222


Q ss_pred             Hhh-HH-------------hcCCCcHHHHHHHHHHHHhcCcccChh--------hHHhhhHHHHHHhhcCCChhHHHHHH
Q 019679           72 PCV-KE-------------LSSDSSQHVRSALATVIMGMAPILGKD--------ATIEQLLPIFLSLLKDEFPDVRLNII  129 (337)
Q Consensus        72 ~~l-~~-------------l~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~d~~~~vr~~a~  129 (337)
                      +.+ ..             ..++.+.......+..+..+++....-        ......+..+..+...++.++-..++
T Consensus       286 ~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl  365 (1023)
T 4hat_C          286 QQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTL  365 (1023)
T ss_dssp             HHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            222 11             123345666666666666555422211        11112233555665666788877888


Q ss_pred             HhHHHhHhhhchh--------hHHhhHHHHHHHHhc----------C-Cch----------HHHH-HHHHHhhHhHhhhC
Q 019679          130 SKLDQVNQVIGID--------LLSQSLLPAIVELAE----------D-RHW----------RVRL-AIIEYIPLLASQLG  179 (337)
Q Consensus       130 ~~l~~l~~~~~~~--------~~~~~llp~l~~~~~----------d-~~~----------~vr~-~~~~~l~~l~~~~~  179 (337)
                      .-...+.+..-.+        .+...+.+.+.....          | ..|          .... ..-+.+..+....+
T Consensus       366 ~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~  445 (1023)
T 4hat_C          366 DYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV  445 (1023)
T ss_dssp             HHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH
Confidence            7777776543211        111234444433211          1 111          1111 11144444444334


Q ss_pred             hhhHHHHHHHHHHHHccc--cchHHHHHHHHHHHHHHHHhChH---HHHhhHHHHHHHhhc-----CcchHHHHHHHHHH
Q 019679          180 VGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAI  249 (337)
Q Consensus       180 ~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~~~-----~~~~~vR~~~~~~l  249 (337)
                      . ...+.+.+.+.+.+.+  .+|..|++++-++|.+++....+   .+...++|.+.++..     |++..+|.++++.+
T Consensus       446 ~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l  524 (1023)
T 4hat_C          446 I-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVV  524 (1023)
T ss_dssp             H-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence            3 4455666766666654  68999999999999998877543   345678888888876     46678899999999


Q ss_pred             HHhccccCh-HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHH----------HHHhhhHHHHhhhCCCCcc
Q 019679          250 SLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV----------VEKSIRPCLVELSEDPDVD  318 (337)
Q Consensus       250 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----------~~~~i~~~l~~l~~d~~~~  318 (337)
                      |+.++++.. ..+.+.++..++..+.|+++.|..+|+.++..+++.++...          +.+.++..+.....+-+++
T Consensus       525 Gry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~  604 (1023)
T 4hat_C          525 GQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQ  604 (1023)
T ss_dssp             HTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHH
Confidence            999887642 23567788889999999999999999999999999887643          3455666666666666778


Q ss_pred             HHHHHHHHHHHHHHhhhC
Q 019679          319 VRFFATQALQSKDQVMMS  336 (337)
Q Consensus       319 vr~~a~~al~~l~~~~~~  336 (337)
                      -+..+.+|++.+++..++
T Consensus       605 ~~~~lyeai~~vi~~~~~  622 (1023)
T 4hat_C          605 QVHTFYKACGIIISEERS  622 (1023)
T ss_dssp             HHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            888999999999987764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.18  E-value=1.3e-08  Score=78.06  Aligned_cols=221  Identities=11%  Similarity=0.080  Sum_probs=171.5

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC--hh
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG  181 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~  181 (337)
                      +..+..+.+++.|.++.++..++..++.+.+....   ....+.++|.+..+..+++.++---++.++..+....+  ++
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34678889999999999999999999999887532   22347789999999999999999999999999988763  33


Q ss_pred             hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH
Q 019679          182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  261 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~  261 (337)
                       -+..+...+...+++++.-++..++..++.+ +   .......++..+..++.+++.+++.+++.++..++..-+....
T Consensus       112 -~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i  186 (265)
T 3b2a_A          112 -TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH  186 (265)
T ss_dssp             -HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred             -HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence             3467888899999999999999999999887 2   2222456788888888889999999999999999887775556


Q ss_pred             HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhh-hcHH--HHHHhhhHHHHhhh-CCCCccHHHHHHHHHHHHHH
Q 019679          262 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI-VDQS--VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       262 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~~--~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~l~~  332 (337)
                      ...++.-+..+++.+++.++.-|..++..+... +.++  .-...+.....++. -...|.+|..|-..-+.+-.
T Consensus       187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~  261 (265)
T 3b2a_A          187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDS  261 (265)
T ss_dssp             GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence            667777788888888999999999999888653 2211  11235566666666 66788898888766555443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.18  E-value=8.3e-12  Score=90.56  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=79.3

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  108 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  108 (337)
                      ..-.+.+.+.++|+++.+|..++..|+.++..        . ++.+.++++|+++.||..++.+++.+..        ..
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST--------T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence            34567777788888888888888887765432        1 3666667778888888888888887763        23


Q ss_pred             hHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhH
Q 019679          109 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  173 (337)
Q Consensus       109 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~  173 (337)
                      .++.+.+++.|+++.||..++.+++.+..        +..+|.+.+.++|+++.||..++..+..
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            46777777778888888888888877652        3456667777777777788777777654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.17  E-value=3.4e-12  Score=92.61  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH
Q 019679          183 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  262 (337)
Q Consensus       183 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~  262 (337)
                      +.+...+.+...|+|+++.+|..|+..|+.+    |..    . ++.+...++|+++.+|..++.+++.+..        
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSC----SST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            3455677778888888888888888888754    222    1 4777788888888888888888887652        


Q ss_pred             hhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          263 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       263 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      ...++.+...+.|+++.||.+++.+|+.+..        ....|.|..+++|+++.||..|+++|+.
T Consensus        72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2346777777788888899888888888753        3456667777788888888888888764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.09  E-value=4.9e-08  Score=93.90  Aligned_cols=169  Identities=10%  Similarity=0.056  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcC-----CCc
Q 019679           13 NQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSS-----DSS   82 (337)
Q Consensus        13 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~-----d~~   82 (337)
                      ++|..++...++ ...+.+++.+.+.+.+  .+|..|++++.+++.+++.+.++   .+...++|.+..+.+     |+.
T Consensus       435 d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k  513 (1023)
T 4hat_C          435 EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK  513 (1023)
T ss_dssp             HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence            555555554444 3345677777776654  67999999999999999988765   345667777777776     567


Q ss_pred             HHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------HHhhHHHH
Q 019679           83 QHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQSLLPA  151 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~llp~  151 (337)
                      ..||..++..+|..++.+... .....++..+.+.+.|+++.|..+|+.++..+++..+...          +.+.++..
T Consensus       514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~  593 (1023)
T 4hat_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD  593 (1023)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence            788999999999999876422 1235666777777788889999999999999999876432          34556666


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      +.+...+-+..-+..+.++++.+++..+...
T Consensus       594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~  624 (1023)
T 4hat_C          594 IQKTTADLQPQQVHTFYKACGIIISEERSVA  624 (1023)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence            6676677778888999999999999987544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.09  E-value=5.2e-10  Score=86.48  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHH-hhcCCChhHHHHHHHhHHHhHhhhchhhHHh
Q 019679           68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ  146 (337)
Q Consensus        68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  146 (337)
                      +.++++...+.+++...||..|+..++.. .      ....+++.+.. +..|++..||..+..+++.++...+++    
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            34556666666666666676666666665 2      11345566665 555666666666666666666533433    


Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  220 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  220 (337)
                      ..++.+.....|++..+|..+.+...-.+.........+.++|++..+..|++.-||.+....|..+++.. ++
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~-Pd  211 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF-PD  211 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC-HH
Confidence            24455666666666666666666654333332222333456667666777777777777777777776654 44

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.95  E-value=7.5e-08  Score=74.54  Aligned_cols=140  Identities=10%  Similarity=0.129  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHHHHh
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ  224 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  224 (337)
                      +.+++....+.+++...+|..++..++.. .    .  .+.+++.+.. +..|++|.||+.+...++.++...+++    
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~----~--~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S----K--DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T----T--SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c----C--cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            56777778888888889999888877766 2    1  1457777776 677899999999999999888755555    


Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ..++.+.....|++..+|..++..+.-.+.......-.+.++|++..+..|++.-||.+....|..+++.-+
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence            366788888899999999888777644333222222345689999999999999999999999999988654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.84  E-value=5.2e-05  Score=73.09  Aligned_cols=326  Identities=11%  Similarity=0.055  Sum_probs=192.3

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--------H-------HHH-
Q 019679            4 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------E-------LAI-   67 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--------~-------~~~-   67 (337)
                      ++.++...+.++..+++..-|+. |+.+++.+.+.++. ++..+...+..|..+.+.+..        .       .+. 
T Consensus       125 ~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~  202 (1073)
T 3gjx_A          125 EKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN  202 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            56788899999999999877665 68899999888854 455677777777777766321        1       111 


Q ss_pred             --HhhhHhhHHhc-CCCcHHHHHHHHHHHHhcCcccChhhHH-hhhHHHH-HHhhcCCChhHHHHHHHhHHHhHhh-hch
Q 019679           68 --QHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIF-LSLLKDEFPDVRLNIISKLDQVNQV-IGI  141 (337)
Q Consensus        68 --~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~-~~~  141 (337)
                        +.+++.+...+ +..++.+...++++++.+..+++-.... ..+++.+ ..++.  ++.+|..|+.++..++.. .+.
T Consensus       203 ~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~  280 (1073)
T 3gjx_A          203 EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQ  280 (1073)
T ss_dssp             TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGG
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccc
Confidence              12334443333 3467788889999999999988755433 5678877 57764  478999999999887754 110


Q ss_pred             --hhH---HhhHHHHHHHH------------------------------------------------------------h
Q 019679          142 --DLL---SQSLLPAIVEL------------------------------------------------------------A  156 (337)
Q Consensus       142 --~~~---~~~llp~l~~~------------------------------------------------------------~  156 (337)
                        +.+   .+.++..+..+                                                            .
T Consensus       281 ~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s  360 (1073)
T 3gjx_A          281 YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVS  360 (1073)
T ss_dssp             GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence              110   00111101000                                                            0


Q ss_pred             cCCchHHHHHHHHHhhHhHhhhCh---------------------------hhHHHHHHHHHHHHcc-------------
Q 019679          157 EDRHWRVRLAIIEYIPLLASQLGV---------------------------GFFDDKLGALCMQWLK-------------  196 (337)
Q Consensus       157 ~d~~~~vr~~~~~~l~~l~~~~~~---------------------------~~~~~~l~~~l~~~l~-------------  196 (337)
                      ..++..+=..+++....+.+.+-.                           ..+..++...+..-+.             
T Consensus       361 ~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~g  440 (1073)
T 3gjx_A          361 EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQG  440 (1073)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccc
Confidence            111111112222222222211100                           0011122222222221             


Q ss_pred             --------ccch-HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC--cchHHHHHHHHHHHHhccccChH---HHH
Q 019679          197 --------DKVY-SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---ITC  262 (337)
Q Consensus       197 --------d~~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~---~~~  262 (337)
                              |... ..+...-.++..+. .++++.....+++.+.+.+..  .+|..+.+++.++|+++.....+   .+.
T Consensus       441 e~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L  519 (1073)
T 3gjx_A          441 EVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL  519 (1073)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             hHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH
Confidence                    0000 12222222333332 345555556667777665553  46999999999999998777642   567


Q ss_pred             hhHHHHHHhhccCC-----ChhHHHHHHHHHHHHhhhhcH-HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          263 SQLLPVVINASKDR-----VPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       263 ~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      +.+++.++.+...+     ..-++...+..+|+..+.+.. ..+...++..|.+...|+++.|+..|+.|+..+.+.-
T Consensus       520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C  597 (1073)
T 3gjx_A          520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            78888888877544     234565666788888776653 2445666666667778899999999999998887653

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.69  E-value=2.4e-05  Score=77.19  Aligned_cols=133  Identities=12%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC------HH-------HHH-
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN------PE-------LAI-   67 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~------~~-------~~~-   67 (337)
                      +..+.||..++.++..+++.-.|+. |+++++.+.+.++. ++..+..++..|..+.+.+.      ..       .+. 
T Consensus       107 ~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~  184 (1204)
T 3a6p_A          107 EEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQ  184 (1204)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence            3578999999999999999887744 78999999999866 55668888888888876421      10       011 


Q ss_pred             --HhhhHhhHHhcCC-------------------CcHHHHHHHHHHHHhcCcccChhhHHh---hhHHHHHHhhcCCChh
Q 019679           68 --QHILPCVKELSSD-------------------SSQHVRSALATVIMGMAPILGKDATIE---QLLPIFLSLLKDEFPD  123 (337)
Q Consensus        68 --~~ll~~l~~l~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~  123 (337)
                        ..+++.+...+++                   .+..++..+++++.......+.....+   .+++.+..++.+  +.
T Consensus       185 ~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~  262 (1204)
T 3a6p_A          185 NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QE  262 (1204)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HH
Confidence              1233333333322                   234577788888887777666443322   377777777664  67


Q ss_pred             HHHHHHHhHHHhHhh
Q 019679          124 VRLNIISKLDQVNQV  138 (337)
Q Consensus       124 vr~~a~~~l~~l~~~  138 (337)
                      +|..|+.+|..++..
T Consensus       263 lr~~A~ecL~~i~s~  277 (1204)
T 3a6p_A          263 LQLGAAECLLIAVSR  277 (1204)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            888888888877764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.63  E-value=2.2e-05  Score=75.65  Aligned_cols=172  Identities=8%  Similarity=0.026  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCC---
Q 019679           10 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS---   81 (337)
Q Consensus        10 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~---   81 (337)
                      ..-+++.-+ ..++++.....+++.+.+.+..  .+|..+++++.+++.++..+.++   .+...+++.+..+.+.+   
T Consensus       458 ~mrd~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~k  536 (1073)
T 3gjx_A          458 NMRETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGK  536 (1073)
T ss_dssp             HHHHHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccccc
Confidence            334444333 3444444445566777665543  46999999999999998877753   45566777777776544   


Q ss_pred             --cHHHHHHHHHHHHhcCcccChh-hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh----------HHhhH
Q 019679           82 --SQHVRSALATVIMGMAPILGKD-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----------LSQSL  148 (337)
Q Consensus        82 --~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l  148 (337)
                        ...++...+..+|...+.+... ...+.++..+.+.+.++++.|+.+|+.++..+++.++...          +...+
T Consensus       537 d~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i  616 (1073)
T 3gjx_A          537 DNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI  616 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred             chhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence              4567777888999988765432 1345667777788889999999999999999998876532          33445


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh
Q 019679          149 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  182 (337)
Q Consensus       149 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  182 (337)
                      +..+.....+-+..-.....++++.++...+.+.
T Consensus       617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~  650 (1073)
T 3gjx_A          617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT  650 (1073)
T ss_dssp             HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence            5555566666677788888999999998887654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.51  E-value=4.6e-05  Score=75.18  Aligned_cols=302  Identities=12%  Similarity=0.026  Sum_probs=172.9

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHHHhhhHh--------hHHhc--------CCCcHHHHHHHHHH
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAIQHILPC--------VKELS--------SDSSQHVRSALATV   92 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~-~~~~~~~ll~~--------l~~l~--------~d~~~~vr~~a~~~   92 (337)
                      .+++.+..++.+  +.+|..|+++|..++..-. ++.. ..++..        +.+..        +|.+..+++..++.
T Consensus       249 ~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~-~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~l  325 (1204)
T 3a6p_A          249 KLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDR-KPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQV  325 (1204)
T ss_dssp             HHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHH-GGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhH-HHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHH
Confidence            378888877764  6799999999999987532 2221 111111        11121        33355777777777


Q ss_pred             HHhcCcccC----------hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--h-h---hHHhhHHHHHHHHh
Q 019679           93 IMGMAPILG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--I-D---LLSQSLLPAIVELA  156 (337)
Q Consensus        93 l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~llp~l~~~~  156 (337)
                      +..++..+.          .......+++.++++..+++..|-..++.....+.+...  . +   .+...+++.+...+
T Consensus       326 l~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l  405 (1204)
T 3a6p_A          326 LCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNL  405 (1204)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHH
Confidence            776653211          111235789999999999888888888887776665532  1 1   12233444442111


Q ss_pred             ------cCC---------------------chHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc------------
Q 019679          157 ------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD------------  197 (337)
Q Consensus       157 ------~d~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------------  197 (337)
                            .+.                     .+..|......+..++...+. ...+.+.+.+...+.+            
T Consensus       406 ~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-~~l~~v~~~l~~~l~~~l~~~~~~~~~~  484 (1204)
T 3a6p_A          406 VKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-TSFQMAGEWLKYQLSTFLDAGSVNSCSA  484 (1204)
T ss_dssp             SCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTCC-----------
T ss_pred             HHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhhhhcccccccccc
Confidence                  100                     124566666666666654432 2333444544333322            


Q ss_pred             -------------cchHHHHHHHHHHHHHHHHh---C-hHHHHhhHHHHHHHhh---cCcchHHHHHHHHHHHHhccccC
Q 019679          198 -------------KVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       198 -------------~~~~vr~~a~~~l~~~~~~~---~-~~~~~~~l~~~l~~~~---~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                                   +.+...++....+..+...+   . .+.....+.+.+...+   +..++.+|...+.+++.+..++.
T Consensus       485 ~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~  564 (1204)
T 3a6p_A          485 VGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVT  564 (1204)
T ss_dssp             ------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGG
T ss_pred             cccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHh
Confidence                         23344566555555555443   1 1111112344444442   23467799999999999888765


Q ss_pred             h-HHHHhhHHHHHHhhccC------------CChhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHhhhCC---CCccH
Q 019679          258 S-EITCSQLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVELSED---PDVDV  319 (337)
Q Consensus       258 ~-~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d---~~~~v  319 (337)
                      . ..+...++..++..+.+            .+.+||.+|+.++..+++.++...  +.+.+...+..++..   -+..=
T Consensus       565 ~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e  644 (1204)
T 3a6p_A          565 YRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQME  644 (1204)
T ss_dssp             TCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHH
T ss_pred             cCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHH
Confidence            2 23556666777766655            345899999999999998886541  234445544454432   23445


Q ss_pred             HHHHHHHHHHHHHhhh
Q 019679          320 RFFATQALQSKDQVMM  335 (337)
Q Consensus       320 r~~a~~al~~l~~~~~  335 (337)
                      +....+|+..++..++
T Consensus       645 ~~~L~eal~~ia~~~~  660 (1204)
T 3a6p_A          645 KCALMEALVLISNQFK  660 (1204)
T ss_dssp             HHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhccCC
Confidence            6667777777755443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.47  E-value=0.00018  Score=64.46  Aligned_cols=302  Identities=11%  Similarity=0.076  Sum_probs=184.2

Q ss_pred             cchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHH-hcCC-CcHHHHHHHHHHHHhcCcccChh--
Q 019679           29 SDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE-LSSD-SSQHVRSALATVIMGMAPILGKD--  103 (337)
Q Consensus        29 ~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~-l~~d-~~~~vr~~a~~~l~~l~~~~~~~--  103 (337)
                      .+.++.+...++ ..-.+-|+.|+..|..+++..... +...-+|.+.. +-+| .+..+-+.+++.|..+...-+.+  
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~   98 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV   98 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence            355555555554 345778999999999888765544 22333444433 3344 34455566777775543211110  


Q ss_pred             -----------------hH--HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh---H--HhhHHHHHHHHhcCC
Q 019679          104 -----------------AT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---L--SQSLLPAIVELAEDR  159 (337)
Q Consensus       104 -----------------~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~llp~l~~~~~d~  159 (337)
                                       ..  ..+-++.++.+++..+..+|..+++.|..++..-+.+.   +  .+.-+|.+..+++|+
T Consensus        99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~  178 (651)
T 3grl_A           99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS  178 (651)
T ss_dssp             ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS
T ss_pred             cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc
Confidence                             00  13568889999999999999999999999997754422   2  235678899999999


Q ss_pred             chHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccch----HHHHHHHHHHHHHHHHhC-hH-HHH-hhHHHH
Q 019679          160 HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEFG-PD-WAM-QHIVPQ  229 (337)
Q Consensus       160 ~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~~-~~-~~~-~~l~~~  229 (337)
                      ...+|..++..+..+...-..   -...+...+.++..+..+..    .|-+.++..+..+.+.-. ++ .+. ...+|.
T Consensus       179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~  258 (651)
T 3grl_A          179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR  258 (651)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence            999999999999988765321   11223355667777766544    677788888888876421 12 222 235555


Q ss_pred             HHHhhcCc----chHHH-----HHHHHHHHHhccccCh---------HHHHhhHHHHHHhhccCC--ChhHHHHHHHHHH
Q 019679          230 VLEMINNP----HYLYR-----MTILQAISLLAPVMGS---------EITCSQLLPVVINASKDR--VPNIKFNVAKVLQ  289 (337)
Q Consensus       230 l~~~~~~~----~~~vR-----~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~  289 (337)
                      +..++..+    .|.-+     ..++..+..+...-++         ......+++.+++++..+  ...+|..|+.+++
T Consensus       259 L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla  338 (651)
T 3grl_A          259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS  338 (651)
T ss_dssp             GGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence            55565422    23211     2345555555443221         122345677777776544  4679999999999


Q ss_pred             HHhhhhcH--HHHHH----------hhhHHHHhhhCCC-CccHHHHHHHHHHHHH
Q 019679          290 SLIPIVDQ--SVVEK----------SIRPCLVELSEDP-DVDVRFFATQALQSKD  331 (337)
Q Consensus       290 ~i~~~~~~--~~~~~----------~i~~~l~~l~~d~-~~~vr~~a~~al~~l~  331 (337)
                      .+...-..  +.+..          .++..|..+.++. ..++|..|+..+..+.
T Consensus       339 ~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          339 EVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            88754322  22221          1333344445554 4678988888887664

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.45  E-value=0.00023  Score=60.97  Aligned_cols=251  Identities=14%  Similarity=0.093  Sum_probs=160.0

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHH
Q 019679           33 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  112 (337)
Q Consensus        33 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  112 (337)
                      ..++.... .++..++.|+..+.++.+.++.-  .+..+..+..+++|.+..||..|++.|..++..    .....+..+
T Consensus        32 ~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDv  104 (507)
T 3u0r_A           32 QVILDGVK-GGTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADI  104 (507)
T ss_dssp             HHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence            33334443 36899999999999999987763  234566777899999999999999999999975    346778899


Q ss_pred             HHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh----hHHHHHH
Q 019679          113 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLG  188 (337)
Q Consensus       113 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~  188 (337)
                      +.++++..++.-+..+=++|-.+.+.-....+ ..++..+..    .+..+|.-++..+..-...++.+    .....+.
T Consensus       105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl-~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          105 LTQLLQTDDSAEFNLVNNALLSIFKMDAKGTL-GGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhcChHHHH-HHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99999988888888888888777765322222 333333333    35789998888887665555443    2445566


Q ss_pred             HHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc--------Ccc--hHHHHHHHHHHHHhccccCh
Q 019679          189 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--------NPH--YLYRMTILQAISLLAPVMGS  258 (337)
Q Consensus       189 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~--~~vR~~~~~~l~~l~~~~~~  258 (337)
                      ..+.+.|.|-+..--......|..+ +.++.-.-.+.+++.+.+...        |..  .+...++-.++..++.....
T Consensus       180 ~~ikK~L~DVT~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~S  258 (507)
T 3u0r_A          180 TESKKVLEDVTGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHS  258 (507)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCCh
Confidence            7777778776554333333333221 112211224566776666532        222  23334444555555555555


Q ss_pred             HHHHhhHHHHHHhhccCCCh-----hHHHHHHHHHHHHhhhhc
Q 019679          259 EITCSQLLPVVINASKDRVP-----NIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       259 ~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~i~~~~~  296 (337)
                      ..|..++...++..+++-..     ..|....++++.++...|
T Consensus       259 tkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          259 TRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             HHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            44555544444444443322     378899999999998888

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.39  E-value=0.00022  Score=61.14  Aligned_cols=243  Identities=13%  Similarity=0.083  Sum_probs=154.0

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~  160 (337)
                      .+...++.|++.+.++...++.  ..+.-+..+..++.|.+..||..|++.|..+++.    .....+...|.++++..+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd  113 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDD  113 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccc
Confidence            4688999999999999998875  3467788999999999999999999999999986    335788899999999888


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH----HHhhHHHHHHHhhcC
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINN  236 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~~~~  236 (337)
                      ...+..+-.++..+.+.-.+..    +-.++.+... .+..+|+.++..|..-...++.+.    ....+...+...+.|
T Consensus       114 ~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D  188 (507)
T 3u0r_A          114 SAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED  188 (507)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc
Confidence            8777777777777665432322    2223333333 457999999998877666555432    344566677777766


Q ss_pred             cchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhc------cCCChhHHHHHHHHHHHH----hhhhcHH----HHHH
Q 019679          237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS------KDRVPNIKFNVAKVLQSL----IPIVDQS----VVEK  302 (337)
Q Consensus       237 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~i----~~~~~~~----~~~~  302 (337)
                      -+..-=...+..+..+- ..+...-...+++++..-.      .-.+.+.-...+.|+..-    .....+.    ++..
T Consensus       189 VT~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~  267 (507)
T 3u0r_A          189 VTGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE  267 (507)
T ss_dssp             CCHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence            54222122333333322 1222223456666666542      112233333344444333    3333333    4456


Q ss_pred             hhhHHHHhhhCC-CCccHHHHHHHHHHHHHHhhh
Q 019679          303 SIRPCLVELSED-PDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       303 ~i~~~l~~l~~d-~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +++|.+..+... ...+.+.-..+++..++...|
T Consensus       268 kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          268 QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence            677777655442 233478888888888877655

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.33  E-value=2.1e-05  Score=62.05  Aligned_cols=110  Identities=14%  Similarity=0.080  Sum_probs=84.0

Q ss_pred             cchHHHHHHhcCCChH--HHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh-
Q 019679           29 SDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-  102 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~--~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-  102 (337)
                      ...+|.+.+++.++++  .++..++..+..++...++.   ......+|.+.+++..+++.+|..++.+|.+++..-.+ 
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3458899999988877  89888888888877543221   22334789999999999999999999999999753211 


Q ss_pred             --hhHHhhhHHHHHHhhcC-CChhHHHHHHHhHHHhHhh
Q 019679          103 --DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV  138 (337)
Q Consensus       103 --~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~  138 (337)
                        ......-+|.+.+++.+ .+.++++.++.+|-.+...
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~  125 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN  125 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence              11234678999999984 6899999999888888654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.26  E-value=4.3e-05  Score=60.29  Aligned_cols=186  Identities=12%  Similarity=0.038  Sum_probs=120.9

Q ss_pred             hhHhhHHhcCCCcH--HHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc--hh
Q 019679           70 ILPCVKELSSDSSQ--HVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--ID  142 (337)
Q Consensus        70 ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~  142 (337)
                      -+|.+.++++.+++  .++..++..+..++..-.+   .......+|.+.+++...+++++..|+.+|..++..-.  ..
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            46777778877776  8998898888887743221   12234678999999999999999999999999986321  11


Q ss_pred             -hHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhhhC-hhhHHHHHHHHHHHHcc-------c---------cchHHH
Q 019679          143 -LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLK-------D---------KVYSIR  203 (337)
Q Consensus       143 -~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~-------d---------~~~~vr  203 (337)
                       ......+|.+.+++. ..++.++..++..+..++..-. +......-+|.+..++.       +         .+..|+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence             123457888888887 4688999999988888875432 22233345566655432       1         245888


Q ss_pred             HHHHHHHHHHHHHh--ChHHHH--hhHHHHHHHhhcC------cchHHHHHHHHHHHHhccc
Q 019679          204 DAAANNVKRLAEEF--GPDWAM--QHIVPQVLEMINN------PHYLYRMTILQAISLLAPV  255 (337)
Q Consensus       204 ~~a~~~l~~~~~~~--~~~~~~--~~l~~~l~~~~~~------~~~~vR~~~~~~l~~l~~~  255 (337)
                      +.|..+|..++..-  ....+.  ..+++.++.+++.      .+...++.++.++..|+..
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            88888888876421  011121  2345555555432      2345666777777766644

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.10  E-value=0.0034  Score=56.39  Aligned_cols=255  Identities=12%  Similarity=0.094  Sum_probs=155.2

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc-C-CChhHHHHHHHhHHHhHhhhch-------------
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-D-EFPDVRLNIISKLDQVNQVIGI-------------  141 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d-~~~~vr~~a~~~l~~l~~~~~~-------------  141 (337)
                      +.+.+-..-|+.|+..|..+++.+..+. -..-+|.+...++ | .+.++-+.++..|-.+...-+.             
T Consensus        30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~  108 (651)
T 3grl_A           30 VASSTLLDDRRNAVRALKSLSKKYRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED  108 (651)
T ss_dssp             HHHCCSHHHHHHHHHHHHHTTTTTTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred             HhhccchhHHHHHHHHHHHHHHHhHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence            4445556788899999988887665433 2333455555554 3 3567777777777554432111             


Q ss_pred             ------hhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---H--HHHHHHHHHHHccccchHHHHHHHH
Q 019679          142 ------DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---F--DDKLGALCMQWLKDKVYSIRDAAAN  208 (337)
Q Consensus       142 ------~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~--~~~l~~~l~~~l~d~~~~vr~~a~~  208 (337)
                            +.+  .+.-++.+..+++..+..+|..+++.+..++...+...   +  .+.-++.++.+|+|+...+|..++.
T Consensus       109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall  188 (651)
T 3grl_A          109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL  188 (651)
T ss_dssp             HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence                  011  13457888889999999999999999999987765422   1  1246788899999999999999999


Q ss_pred             HHHHHHHHhCh-HH--HHhhHHHHHHHhhcCcch----HHHHHHHHHHHHhcccc--ChHHHHh-hHHHHHHhhccCCCh
Q 019679          209 NVKRLAEEFGP-DW--AMQHIVPQVLEMINNPHY----LYRMTILQAISLLAPVM--GSEITCS-QLLPVVINASKDRVP  278 (337)
Q Consensus       209 ~l~~~~~~~~~-~~--~~~~l~~~l~~~~~~~~~----~vR~~~~~~l~~l~~~~--~~~~~~~-~l~~~l~~~l~d~~~  278 (337)
                      .|..+.+.-.. +.  ..+..++.+.+.+..+..    .+-.-++..+..+...-  ....|.+ ..+|.+..++..+..
T Consensus       189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~  268 (651)
T 3grl_A          189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE  268 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred             HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence            99998764311 11  134566777777765443    45555667777776553  2334443 355666666643221


Q ss_pred             ----h--HHHH---HHHHHHHHhhhhc-------HH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHH
Q 019679          279 ----N--IKFN---VAKVLQSLIPIVD-------QS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQ  332 (337)
Q Consensus       279 ----~--vr~~---a~~~l~~i~~~~~-------~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~  332 (337)
                          .  .-.+   +...+..+...-+       ++  .....+++.|.+++..+  ...|+..|..+++.+.+
T Consensus       269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir  342 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR  342 (651)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence                1  2223   2233333322211       11  22334566666654433  45688888888887764

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=97.91  E-value=0.00015  Score=69.36  Aligned_cols=186  Identities=7%  Similarity=0.014  Sum_probs=121.6

Q ss_pred             hHHHHHHhhcCCCh-hHHHH-HHHhHHHhHhhhchhhHHhhHHHHHHHHhc-CCchHHHHHHHHHhhHhHhh----hChh
Q 019679          109 LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQ----LGVG  181 (337)
Q Consensus       109 l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~----~~~~  181 (337)
                      ++|.++++.++++. ++... +...+..+....-.....+.++..+.+... +++| .|..++..+..+.-.    ++.+
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~  839 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE  839 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence            66666666666544 55554 444555554443333334556666655555 6899 999998887665432    2333


Q ss_pred             hHHHHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcC------------cchHHHHHHHHH
Q 019679          182 FFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN------------PHYLYRMTILQA  248 (337)
Q Consensus       182 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~------------~~~~vR~~~~~~  248 (337)
                      .. ..+...+..+|.|+. .+||+.|..+|+-+....+.....+.++..+.+.+..            .+...|-+++..
T Consensus       840 ~~-~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg  918 (997)
T 1vsy_5          840 EK-NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG  918 (997)
T ss_dssp             HH-HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence            32 568889999999999 9999999999999987541312223444444444422            112577888888


Q ss_pred             HHHhccccCh----HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH
Q 019679          249 ISLLAPVMGS----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  297 (337)
Q Consensus       249 l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  297 (337)
                      ++++...+.=    ....+.++..+.....|+.+ |+..+-++++.+-++...
T Consensus       919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D  970 (997)
T 1vsy_5          919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRAD  970 (997)
T ss_dssp             HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTST
T ss_pred             HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccch
Confidence            8888766541    34666777777777788644 999999999998765544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.87  E-value=0.00097  Score=64.82  Aligned_cols=184  Identities=11%  Similarity=0.013  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC----
Q 019679           83 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED----  158 (337)
Q Consensus        83 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d----  158 (337)
                      +..|.-...++...+.    .    .-+..+.+.+.+..-...+ ++..+........++   +.++..+..++++    
T Consensus       339 ~~~r~~~lDal~~aGT----~----~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt---~e~l~~~~~l~~~~~~~  406 (1056)
T 1lsh_A          339 KDYRRWILDAVPAMAT----S----EALLFLKRTLASEQLTSAE-ATQIVASTLSNQQAT---RESLSYARELLNTSFIR  406 (1056)
T ss_dssp             HHHHHHHHHHHHHHCS----H----HHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHhHhcCC----H----HHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCC---HHHHHHHHHHHhCcccc
Confidence            5677777777776665    2    2233344444443322222 334443333222221   2344444555543    


Q ss_pred             CchHHHHHHHHHhhHhHhhhC------hhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHH
Q 019679          159 RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  232 (337)
Q Consensus       159 ~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  232 (337)
                      .++.+|..++-.++.++...+      .....+.+...+.+.+...+..-+..++++||.+..    .    ..++.+..
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----p----~~l~~l~~  478 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----P----NSIKKIQR  478 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----G----GGHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----h----hHHHHHHH
Confidence            457788888888888876542      122345566677777777777778888888887642    2    24455555


Q ss_pred             hhc-------CcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679          233 MIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  289 (337)
Q Consensus       233 ~~~-------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  289 (337)
                      ++.       +...++|.+|+.++..++... ++...+.+++++.+  .+..++||.+|+..|-
T Consensus       479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF  539 (1056)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             hhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHHH
Confidence            543       234689999999999887422 22234445555544  5667899999987653

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=97.71  E-value=6.1e-05  Score=72.06  Aligned_cols=188  Identities=14%  Similarity=0.093  Sum_probs=124.9

Q ss_pred             hHHHHHHhcCCChH-HHHHH-HHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCc----ccChh
Q 019679           31 VVPAYVRLLRDNEA-EVRIA-AAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAP----ILGKD  103 (337)
Q Consensus        31 l~~~l~~~~~d~~~-~vR~~-a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~----~~~~~  103 (337)
                      ++|.+..+..+++. ++... +..++..++...-+....+.++..+.+..+ +++| +|..++..+-.+.-    .+.++
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~  839 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE  839 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence            66667666766665 66555 445555554443344444556666666666 6899 99999887654321    22322


Q ss_pred             hHHhhhHHHHHHhhcCCC-hhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------------CchHHHHHHHHH
Q 019679          104 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------------RHWRVRLAIIEY  170 (337)
Q Consensus       104 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------------~~~~vr~~~~~~  170 (337)
                       ....+...+.+++.|+. .+||..|..+|..+.+..+.......++..+.+....            ++...|++++-.
T Consensus       840 -~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLg  918 (997)
T 1vsy_5          840 -EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLG  918 (997)
T ss_dssp             -HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHH
Confidence             23578899999999999 9999999999999987752311112344444333311            122578888888


Q ss_pred             hhHhHhhhCh----hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH
Q 019679          171 IPLLASQLGV----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  221 (337)
Q Consensus       171 l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  221 (337)
                      |+.++..++-    ..+.+.++..+.....|+.+ |+..+-++++.+-+.....|
T Consensus       919 L~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W  972 (997)
T 1vsy_5          919 LGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTW  972 (997)
T ss_dssp             HHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTH
T ss_pred             HHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhH
Confidence            8888887642    35777788777777888544 89999999998877664433

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.56  E-value=0.02  Score=45.66  Aligned_cols=128  Identities=14%  Similarity=0.235  Sum_probs=90.7

Q ss_pred             hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHH
Q 019679          123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI  202 (337)
Q Consensus       123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  202 (337)
                      +.+...+.....+.-.-.+. +.+.+++.+.++..|++..+|..+++.+...+..  +..+..++++.+..+++|+++.|
T Consensus        30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V  106 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV  106 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            46666666655544332333 5577888888888888888999888888877643  23466778888888889988888


Q ss_pred             HHHHHHHHHHHHHHh-------Ch-----H--H-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679          203 RDAAANNVKRLAEEF-------GP-----D--W-AMQHIVPQVLEMINNPHYLYRMTILQAISLLA  253 (337)
Q Consensus       203 r~~a~~~l~~~~~~~-------~~-----~--~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~  253 (337)
                      .+.++.+.+.+....       +.     +  | ....+-..+.....+.+..+|..++.++..+.
T Consensus       107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            888888887776542       11     1  1 13345566777777788999999999998865

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.53  E-value=0.00035  Score=64.75  Aligned_cols=147  Identities=20%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhh-HHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhh-
Q 019679           68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL-LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-  143 (337)
Q Consensus        68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-  143 (337)
                      +.++|.+.+ ++++++..|..|+.++.+++..-....  ..+.+ .+++..++.|++.+||.+|+.+|..++..-|.+. 
T Consensus        34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            346666654 456666777777777777764211111  11233 3445556677777777777777776665544332 


Q ss_pred             ---HHhhHHHHHHHHhcCC--------------c-------hHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHcc
Q 019679          144 ---LSQSLLPAIVELAEDR--------------H-------WRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK  196 (337)
Q Consensus       144 ---~~~~llp~l~~~~~d~--------------~-------~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~  196 (337)
                         +...++|.+..+++..              .       |.+-..++..+..++..-+..   ......+|.++..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence               2233444444332110              0       111122333444444322111   111234555555553


Q ss_pred             c---cchHHHHHHHHHHHHHHH
Q 019679          197 D---KVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       197 d---~~~~vr~~a~~~l~~~~~  215 (337)
                      +   ....++..++.+|..+..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~  214 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSE  214 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHT
T ss_pred             hcCCCcHHHHHHHHHHHHHHhc
Confidence            3   345788888888887765

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.51  E-value=0.0014  Score=60.73  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             hhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH--Hhh-HHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh
Q 019679          107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQS-LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  181 (337)
Q Consensus       107 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~-llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  181 (337)
                      ..++|.+. .++++++..|..|+.++..+++.-.....  .+. +.+.+..++.|++..||..++.+|..++..-|.+
T Consensus        34 ~~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            45555543 35666666666666666666653222221  112 2233444555555555555555555555554443

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.36  E-value=0.025  Score=45.03  Aligned_cols=111  Identities=12%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh------
Q 019679          222 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV------  295 (337)
Q Consensus       222 ~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~------  295 (337)
                      +.+++++.+.++..+++..+|.-.+.++...+..  ........++.+..++.|+++.|-+.++.+...+....      
T Consensus        50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~  127 (257)
T 3gs3_A           50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCS  127 (257)
T ss_dssp             GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455566666655566666666666665554411  22344556666666666666666666666655554321      


Q ss_pred             -cH-----H---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          296 -DQ-----S---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       296 -~~-----~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                       ++     +   .....+...+..+....+..||..+.|.++.+....
T Consensus       128 ~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q  175 (257)
T 3gs3_A          128 LMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ  175 (257)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence             00     1   112344444455556667889999999999987544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.36  E-value=0.0098  Score=57.89  Aligned_cols=131  Identities=8%  Similarity=0.027  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHccc----cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhcc
Q 019679          185 DKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  254 (337)
Q Consensus       185 ~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~  254 (337)
                      ++++..+..++++    .++.+|+.+.-+++.+....-.      ....+.+...+.+.+...+...+..++.+||.++.
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            3466667777765    4567999999999988865411      12244555666666666778888999999999875


Q ss_pred             ccChHHHHhhHHHHHHhhcc-------CCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhh--CCCCccHHHHHHH
Q 019679          255 VMGSEITCSQLLPVVINASK-------DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS--EDPDVDVRFFATQ  325 (337)
Q Consensus       255 ~~~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~--~d~~~~vr~~a~~  325 (337)
                      .        ..++.+.+++.       +....||.+|+.+|..+.....     ..+.+.+..+.  .+.+++||..|..
T Consensus       470 p--------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~  536 (1056)
T 1lsh_A          470 P--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCI  536 (1056)
T ss_dssp             G--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             h--------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence            2        34555555553       2234688999999999975422     23333444443  3345677777766


Q ss_pred             HHH
Q 019679          326 ALQ  328 (337)
Q Consensus       326 al~  328 (337)
                      .|-
T Consensus       537 ~Lm  539 (1056)
T 1lsh_A          537 VFF  539 (1056)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.17  E-value=0.087  Score=44.53  Aligned_cols=184  Identities=13%  Similarity=0.095  Sum_probs=118.2

Q ss_pred             hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHH
Q 019679          123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI  202 (337)
Q Consensus       123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  202 (337)
                      +.+...++.+..++-.-.+ .+.+.++|.+.++..|.+..+|..+++.+...+..  ...+...+++.+..+++|+++.|
T Consensus        40 ~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V  116 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNV  116 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            3565566655554333223 34578888888888888888999988888877753  23345778888888888888888


Q ss_pred             HHHHHHHHHHHHHHh--------C------hHH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC-----h----
Q 019679          203 RDAAANNVKRLAEEF--------G------PDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-----S----  258 (337)
Q Consensus       203 r~~a~~~l~~~~~~~--------~------~~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~-----~----  258 (337)
                      .+.++.+.+.+....        +      ..| ....+-..+...+.+.+..+|..++.++..+.....     .    
T Consensus       117 ~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~  196 (386)
T 3o2t_A          117 VKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPR  196 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccc
Confidence            888888877765331        1      011 133455666677777889999999999888642110     0    


Q ss_pred             -----------------------HHHHhhHHHHHHhhccCCC--hhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhh
Q 019679          259 -----------------------EITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  311 (337)
Q Consensus       259 -----------------------~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  311 (337)
                                             +.....++..++..+.++.  +..-.+++.+|+.+++.=+  .+...++++|..+
T Consensus       197 ~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP--~~~~rIl~aL~~l  272 (386)
T 3o2t_A          197 RQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP--MFMSEVIQAYETL  272 (386)
T ss_dssp             GGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHH
T ss_pred             ccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHhh
Confidence                                   0112356778888887542  3344566777777765422  2345666666654

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=97.14  E-value=0.049  Score=41.21  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=87.4

Q ss_pred             hHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC------CchHHHHHHHHHhhHhHhh--hChhhHHHHHHHHHHHH
Q 019679          123 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  194 (337)
Q Consensus       123 ~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~  194 (337)
                      ..|..|+.++..=   .|-    +.++|.+..++.+      .+...-.........+..+  +.-+.+..+++|.++.+
T Consensus        23 ~~r~~aL~sL~~D---~gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKE---SGL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHC---SSC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CCh----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            4566666665433   222    4455655554422      2333333344444444433  23456778899988877


Q ss_pred             ccc---cchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCc--chHHHHHHHHHHHHhccccChHHHHhhHHH
Q 019679          195 LKD---KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLP  267 (337)
Q Consensus       195 l~d---~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~  267 (337)
                      +-.   ....+|+.|++.++.++..+|..  .....+...+...+.|+  +...+..|+..+..+    |.+.....++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhc
Confidence            622   11289999999999999999763  34556777777777665  477888888877774    45656666777


Q ss_pred             HHHhhcc
Q 019679          268 VVINASK  274 (337)
Q Consensus       268 ~l~~~l~  274 (337)
                      .+-...+
T Consensus       172 ~l~~~~~  178 (196)
T 4atg_A          172 HAEEYKR  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            7766554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.07  E-value=0.048  Score=46.08  Aligned_cols=147  Identities=10%  Similarity=0.042  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhh
Q 019679          185 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  264 (337)
Q Consensus       185 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~  264 (337)
                      +.++..+-+.-...+ ..+-..++....+.-.-++. ..+.+++.+.++..|++..+|...+.+|...+..  ...+...
T Consensus        25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~  100 (386)
T 3o2t_A           25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLK  100 (386)
T ss_dssp             HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            344444443322222 24555555555544332333 4567888888888888888888888888776532  2234567


Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHhhhh--------c------H-HHHHHhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIV--------D------Q-SVVEKSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~--------~------~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      +++.+..++.|+++.|-+.++.+...+....        +      . ......+...+..+....+..||..|+|.++.
T Consensus       101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~  180 (386)
T 3o2t_A          101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG  180 (386)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            8888888888888888888888887776321        1      0 11223455555556666778899999999999


Q ss_pred             HHHhhh
Q 019679          330 KDQVMM  335 (337)
Q Consensus       330 l~~~~~  335 (337)
                      +.....
T Consensus       181 VIl~qS  186 (386)
T 3o2t_A          181 LIVTLS  186 (386)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            886654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.00  E-value=1.2  Score=36.57  Aligned_cols=209  Identities=12%  Similarity=0.150  Sum_probs=130.1

Q ss_pred             HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-chh-----hH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679          105 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID-----LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  176 (337)
Q Consensus       105 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  176 (337)
                      ....++..+...+..=+.+.|+.+...+..+...- +.+     -+  .+.++..+...-++++...-.+.  .+...++
T Consensus        75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir  152 (341)
T 1upk_A           75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIR  152 (341)
T ss_dssp             HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHT
T ss_pred             HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHH
Confidence            34667778888887778888888888877776542 110     11  24566666666655543222111  0111110


Q ss_pred             h--hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHH---HhhHHHHHHHhhcCcchHHHHHHHHH
Q 019679          177 Q--LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQA  248 (337)
Q Consensus       177 ~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~  248 (337)
                      .  +..........--++.+...++-+|-..|..++..+.....   .+.+   .+.++..+..++.++++-.|..++..
T Consensus       153 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          153 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            0  00000111122245577888888999999888887765421   1111   34577888889999999999999999


Q ss_pred             HHHhccccC-hHHH-----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH-H-------HHHHhhhHHHHhhhCC
Q 019679          249 ISLLAPVMG-SEIT-----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------VVEKSIRPCLVELSED  314 (337)
Q Consensus       249 l~~l~~~~~-~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-------~~~~~i~~~l~~l~~d  314 (337)
                      ++.+.-.-. ....     ...-+-.+..+|.|++..++..|.+.+.-+...-.. .       ...++++..|..+..|
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d  312 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQND  312 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999853211 1111     224577889999999999999999999988643211 1       1236788888888887


Q ss_pred             C
Q 019679          315 P  315 (337)
Q Consensus       315 ~  315 (337)
                      +
T Consensus       313 ~  313 (341)
T 1upk_A          313 R  313 (341)
T ss_dssp             C
T ss_pred             C
Confidence            7

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=94.91  E-value=0.88  Score=34.37  Aligned_cols=141  Identities=11%  Similarity=0.052  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCC------ChhHHHHHHHhHHHhHhhh--chhhHHhhHHHHHHHH
Q 019679           84 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVEL  155 (337)
Q Consensus        84 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~------~~~vr~~a~~~l~~l~~~~--~~~~~~~~llp~l~~~  155 (337)
                      ..|..|++.+..=..       ...++|.+..++.+.      +...-...++....+.+.-  ..+.....++|.+...
T Consensus        23 ~~r~~aL~sL~~D~g-------L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKESG-------LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHCSS-------CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC-------hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            357888777765443       356778887776542      2333333444444444332  2345556788877766


Q ss_pred             hcC---CchHHHHHHHHHhhHhHhhhCh--hhHHHHHHHHHHHHcccc--chHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679          156 AED---RHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDWAMQHIVP  228 (337)
Q Consensus       156 ~~d---~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  228 (337)
                      +-.   ....+|..++..++.++..++.  ....+.+...+.+.+.|+  +.....+|+..+..    +|++.+..-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhc
Confidence            411   1117999999999999999976  346778888888888775  45778888888875    566666666778


Q ss_pred             HHHHhhc
Q 019679          229 QVLEMIN  235 (337)
Q Consensus       229 ~l~~~~~  235 (337)
                      .+....+
T Consensus       172 ~l~~~~~  178 (196)
T 4atg_A          172 HAEEYKR  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            8766654

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.15  E-value=0.33  Score=34.63  Aligned_cols=70  Identities=6%  Similarity=0.052  Sum_probs=33.7

Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH----HhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhh
Q 019679          266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  335 (337)
Q Consensus       266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~  335 (337)
                      +..+.+.+...++.+...|+..|..+.+.+|.....    ..++..|..+.+..++.|+..+...+...+..|+
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence            344444445555555555555555555555543221    2233333333333455555555555555555544

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.91  E-value=1.7  Score=33.64  Aligned_cols=133  Identities=8%  Similarity=0.010  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhChHHHHhhHHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  228 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  228 (337)
                      ..+..+..++....|..++..+.........     .-++.+-.++. .++|.+-...+..++.+....     .+.+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            4445556666667777777777655433222     23344444454 467777777665566655432     223667


Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      .+.....+++..+|..++..+  + .. ..+.....+++.+...+.|+..-||.+...+|..+++...
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~  191 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP  191 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCH
Confidence            788888888866665554432  2 22 2222345677888889999999999999999999988744

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.54  E-value=2.7  Score=34.63  Aligned_cols=105  Identities=12%  Similarity=0.072  Sum_probs=67.8

Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh--
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--  182 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  182 (337)
                      ..+.+.+..++.+|-.-|..++..+...=.   .+.+   .+.++..+.++++++++-+|..++..++.+...-....  
T Consensus       167 ~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM  246 (341)
T 1upk_A          167 YDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIM  246 (341)
T ss_dssp             GHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHH
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHH
Confidence            345567777778888888777766643210   1111   13456666777788888888888888887764432211  


Q ss_pred             ----HHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          183 ----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       183 ----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                          ..+.-+..++.+|+|++..++..|...+.-+..
T Consensus       247 ~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          247 TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence                123466777888888888888888777776653

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.48  E-value=2.1  Score=33.18  Aligned_cols=130  Identities=12%  Similarity=-0.000  Sum_probs=55.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChhhHHhhhHH
Q 019679           33 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLP  111 (337)
Q Consensus        33 ~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  111 (337)
                      ..+.++..++..+.|..++..+......+.++.     ++.+...+. .++|.+--..+.+++.+....     .+.+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE-----VVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-----HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH-----HHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            334444444555555555555554433333221     122222221 345554444444344433211     122344


Q ss_pred             HHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHh
Q 019679          112 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  176 (337)
Q Consensus       112 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  176 (337)
                      .+.+...|++.-+|+.++..+-...   . +...+.+++.+.....|++.-||.++.-.|..++.
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~---~-~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k  188 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLK---E-KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  188 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCG---G-GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHH---H-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            4555555555555555554331111   1 11113344444445555555555555555555443

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=92.46  E-value=1.2  Score=31.97  Aligned_cols=72  Identities=8%  Similarity=-0.018  Sum_probs=40.9

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHH----HHhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhh
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV----EKSIRPCLVELSED------PDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~  334 (337)
                      .+..+.+-+...++.+...|+..|..+.+.+|..+.    ...++..|.+++.+      .+..||..+.+.+...+..|
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            344555555666666666666666666666665432    12344445555443      34566666666666666665


Q ss_pred             hC
Q 019679          335 MS  336 (337)
Q Consensus       335 ~~  336 (337)
                      +.
T Consensus       129 ~~  130 (149)
T 3g2s_A          129 PE  130 (149)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.14  E-value=1.8  Score=31.68  Aligned_cols=74  Identities=8%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC-CChhHHHHHHHHHHHHhhhhcHH
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS  298 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~  298 (337)
                      ..+..|...+++++.++...|+..+..+...+|..+.    ...++..+..++.. .++.||..+...+..++..++..
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566777778888899999999999999999887543    13466666666654 56799999999999998887653

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=91.87  E-value=2.5  Score=30.05  Aligned_cols=97  Identities=8%  Similarity=0.069  Sum_probs=60.6

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      ..+++|..=...|..+..=.      ....+.+..+.+-+...++.+...|+..+..+++..|....    ...++..+.
T Consensus        18 l~~~dw~~ileicD~I~~~~------~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~   91 (140)
T 3ldz_A           18 NTAEDWGLILDICDKVGQSR------TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS   91 (140)
T ss_dssp             SSSCCHHHHHHHHHHHTTST------THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHCCC------cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            45577776666666554311      12345667777777788888888888888888888775432    133444444


Q ss_pred             HHhcCCchHHHHHHHHHhhHhHhhhCh
Q 019679          154 ELAEDRHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       154 ~~~~d~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      .+++..+..||.-+++.+...+..++.
T Consensus        92 ~l~~~~~~~Vk~kil~li~~W~~~f~~  118 (140)
T 3ldz_A           92 NVLNKGHPKVCEKLKALMVEWTDEFKN  118 (140)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence            555445666777777776666665543

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=90.99  E-value=4.6  Score=31.49  Aligned_cols=132  Identities=10%  Similarity=0.067  Sum_probs=71.3

Q ss_pred             HHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHc-cccchHHHHHHH-HHHHHHHHHhChHHHHhhHHH
Q 019679          151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAA-NNVKRLAEEFGPDWAMQHIVP  228 (337)
Q Consensus       151 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~-~~l~~~~~~~~~~~~~~~l~~  228 (337)
                      .+..+..+.....|..++..+....+....+..     +.+-.++ ..++|.+-...+ ..++.+.... +    +...+
T Consensus        65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l-----~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~~  134 (232)
T 3jxy_A           65 IIRELWDLPEREFQAAALDIMQKYKKHINETHI-----PFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELISA  134 (232)
T ss_dssp             HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGH-----HHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGGG
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHHH
Confidence            344455555555666666666543333333221     1111222 356676665543 4455554432 1    12445


Q ss_pred             HHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          229 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       229 ~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      .+.....|++..+|..++..+  +...  .+.-...+++.+...+.|+..-||.+...+|..+++...
T Consensus       135 ~l~~W~~s~~~w~rR~ai~~~--l~~~--~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p  198 (232)
T 3jxy_A          135 YIPKWIASDNIWLQRAAILFQ--LKYK--QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP  198 (232)
T ss_dssp             THHHHHHSSCHHHHHHHHHTT--TTCG--GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHhcCCchHHHHHHHHHH--HHHH--hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence            666777777755554444332  2221  111123566677778888888888888888888887643

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=89.89  E-value=5.8  Score=30.91  Aligned_cols=188  Identities=12%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  155 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~  155 (337)
                      ..+.=..|.+|..+-+........ .    .......+..+..+...+.|..|+..+....+...++.     ++.+..+
T Consensus        34 ~~lGVr~P~lR~laK~~~k~~~~~-~----~~~~~~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~  103 (232)
T 3jxy_A           34 LFLGIQTPERRQLLKDIIQIHTLP-D----QKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEEL  103 (232)
T ss_dssp             BCCCCCHHHHHHHHHHHHHHHCCC-C----GGGHHHHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHH
T ss_pred             eeeccChHHHHHHHHHHHHhcccc-c----hhhHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHH
Confidence            455556677777766655443220 0    11223456666667777888888887765544443332     2333333


Q ss_pred             h-cCCchHHHHHHH-HHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHh
Q 019679          156 A-EDRHWRVRLAII-EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM  233 (337)
Q Consensus       156 ~-~d~~~~vr~~~~-~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~  233 (337)
                      + ...+|.+-...+ ..++.+.... ++    .+.+.+..++.|++..+|..++..+-..   . .+.....+++.+...
T Consensus       104 l~~~~nWd~~D~~a~~~~g~~~~~~-p~----~~~~~l~~W~~s~~~w~rR~ai~~~l~~---~-~~~d~~~~~~~i~~~  174 (232)
T 3jxy_A          104 IVTKSWWDSVDSIVPTFLGDIFLKH-PE----LISAYIPKWIASDNIWLQRAAILFQLKY---K-QKMDEELLFWIIGQL  174 (232)
T ss_dssp             HTSSCCHHHHHHHTTTHHHHHHHHC-GG----GGGGTHHHHHHSSCHHHHHHHHHTTTTC---G-GGCCHHHHHHHHHHH
T ss_pred             HccCCChHHHHHhhHHHHHHHHHHC-HH----HHHHHHHHHhcCCchHHHHHHHHHHHHH---H-hCCCHHHHHHHHHHh
Confidence            3 356777766553 3334443321 11    1445677788888888888777654221   1 111123566777788


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679          234 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  289 (337)
Q Consensus       234 ~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  289 (337)
                      +.|+.+.+|.+..++|..++...     .+.+.+++.+-  .-.+..++.|++-|+
T Consensus       175 ~~d~~~yV~kAvgW~Lr~~~k~~-----p~~v~~fl~~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          175 HSSKEFFIQKAIGWVLREYAKTN-----PDVVWEYVQNN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHS--CCCHHHHHHHTTTTH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhC-----HHHHHHHHHHC--CCCHHHHHHHHHhcc
Confidence            88999999999999998877542     23344444442  333455555555443

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=89.34  E-value=3.4  Score=29.98  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             hHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChHHHH----hhHHHH-HHhhcc---CCChhHHHHHHHHHHHHhhhh
Q 019679          225 HIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITC----SQLLPV-VINASK---DRVPNIKFNVAKVLQSLIPIV  295 (337)
Q Consensus       225 ~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~l~~~-l~~~l~---d~~~~vr~~a~~~l~~i~~~~  295 (337)
                      ..+..+..-++ .++.++...|+..+..+...+|..+..    ..++.- +.+.+.   ++...||..+...+..++..+
T Consensus        53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f  132 (157)
T 1elk_A           53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF  132 (157)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence            45666777776 478888899999999999999876432    235555 555553   344689999999999998877


Q ss_pred             cH
Q 019679          296 DQ  297 (337)
Q Consensus       296 ~~  297 (337)
                      +.
T Consensus       133 ~~  134 (157)
T 1elk_A          133 RS  134 (157)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=89.24  E-value=5.2  Score=29.47  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC------CChhHHHHHHHHHHHHhhh
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~  294 (337)
                      ..+..|...+++++.++...|+..+..+...+|..+.    ...++.-+..++..      ....||..+...+..++..
T Consensus        50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4566777788889999999999999999998886543    23466777777652      3579999999999999988


Q ss_pred             hcHH
Q 019679          295 VDQS  298 (337)
Q Consensus       295 ~~~~  298 (337)
                      ++..
T Consensus       130 f~~~  133 (171)
T 1juq_A          130 LPEE  133 (171)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            8753

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.02  E-value=5.3  Score=29.19  Aligned_cols=97  Identities=9%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      ..+++|..-...|..+..=..      ...+.+..+.+-++..++.+...|+..+..+++..|....    ...++..+.
T Consensus        28 ~~~~Dw~~~leicD~I~~~~~------~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~  101 (163)
T 1x5b_A           28 NTTEDWSLIMDICDKVGSTPN------GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR  101 (163)
T ss_dssp             CSSCCHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence            345777766666666654211      2345566777778888899999999999999888875322    133445555


Q ss_pred             HHhcC-CchHHHHHHHHHhhHhHhhhCh
Q 019679          154 ELAED-RHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       154 ~~~~d-~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      .++.. .+..||.-+++.+......++.
T Consensus       102 ~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A          102 AVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            55443 4567777777777777766644

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.75  E-value=6  Score=28.34  Aligned_cols=74  Identities=15%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHH----HhhHHHHHHhhccC------CChhHHHHHHHHHHHHhhh
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~  294 (337)
                      ..+..+..-+++++.++...|+..+..+...+|..+.    ...++..+.+++.+      .+..||..+...+..++..
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4566677777889999999999999999999997643    23577777877764      3679999999999999988


Q ss_pred             hcHH
Q 019679          295 VDQS  298 (337)
Q Consensus       295 ~~~~  298 (337)
                      ++..
T Consensus       118 f~~~  121 (148)
T 1mhq_A          118 FPED  121 (148)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            7643

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=86.89  E-value=9.3  Score=29.63  Aligned_cols=98  Identities=14%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI  152 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l  152 (337)
                      ...+++|..=...+..+..=  ..|    ..+.+..+.+-++..++.+...|+..+..+++..|....    ...++..+
T Consensus        20 ~~~~~dw~~ileicD~I~~~--~~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l   93 (226)
T 3zyq_A           20 LLLETDWESILQICDLIRQG--DTQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL   93 (226)
T ss_dssp             TCSSCCHHHHHHHHHHHHTT--SSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhCC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence            44567888777777776531  112    355677788888889999999999999999998885422    22344444


Q ss_pred             HHHhc-CCchHHHHHHHHHhhHhHhhhCh
Q 019679          153 VELAE-DRHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       153 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      ..+++ ..+..||.-+++.+...+..+..
T Consensus        94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           94 KDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            44442 34456777777777777665533

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.52  E-value=11  Score=29.20  Aligned_cols=75  Identities=13%  Similarity=0.182  Sum_probs=48.3

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD  103 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~----~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~  103 (337)
                      .+.+..+.+-+.+.++.+...|+..|..+.++++....    ...++..+.++++ .+++.||.-+++.+...+..+..+
T Consensus        44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            46777777888888888888888888888887776421    1223333333332 345677777777777776655443

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.44  E-value=8.2  Score=27.65  Aligned_cols=97  Identities=7%  Similarity=0.034  Sum_probs=66.5

Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHHH
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  153 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~  153 (337)
                      ..+++|..=...|..+..=.      ....+.+..+.+-+...++.+...|+..+..+++..|....    ...++..+.
T Consensus        24 l~~~dw~~ileicD~I~~~~------~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~   97 (149)
T 3g2s_A           24 NKELDWASINGFCEQLNEDF------EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI   97 (149)
T ss_dssp             CSSCCHHHHHHHHHHGGGSS------SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHCCC------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            34577776666666544321      12345667777778888899999999999999988886432    244666677


Q ss_pred             HHhcC------CchHHHHHHHHHhhHhHhhhCh
Q 019679          154 ELAED------RHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       154 ~~~~d------~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      +++.+      .+..||.-+++.+...+..++.
T Consensus        98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  130 (149)
T 3g2s_A           98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE  130 (149)
T ss_dssp             HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            77653      4567888888888888777644

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=84.94  E-value=26  Score=32.99  Aligned_cols=74  Identities=9%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             HHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccC--hhhHHhhhHHHHHHhhcC---CChhHHHHHHHhHHHhHhhh
Q 019679           66 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI  139 (337)
Q Consensus        66 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~  139 (337)
                      +.+.+.|.+......++..+...+..++..++...+  .+.....++..+...+..   .++.-..++++++..++..+
T Consensus       336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l  414 (799)
T 1vsy_4          336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI  414 (799)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence            445566666667777777777777777777765444  122334444444444544   45555556666666666544

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=82.99  E-value=1.8  Score=37.62  Aligned_cols=57  Identities=9%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHH---hhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  137 (337)
                      .++.+-..||.=+|.+++..+.....   -.....+++++.+++++||..|+.++..+..
T Consensus       417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            36778888888888888877643321   2457788889999999999999999887754

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=81.95  E-value=11  Score=26.36  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=43.1

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhh
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSI  304 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i  304 (337)
                      .++|.+...++|.||.+-...+..+..         +.+.++|.+...+...+..=+.   ..+..+...+..+ ....+
T Consensus        31 p~lp~LL~WLQD~NWPvA~~i~~~L~~---------~~~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~-~~~~l   97 (134)
T 3ut4_A           31 PIIFDLLKWLQDYNWPIAKDILPVVVL---------HQSIAMPHILTILQGNDIMWKY---WVIKLMIPYLIYP-NKQLV   97 (134)
T ss_dssp             HHHHHHHGGGSCTTSTTHHHHHHHHHH---------THHHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHH---------ccHhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH-HHHHH
Confidence            466666666666666665555444443         1234445554444333332222   2233333333332 23455


Q ss_pred             hHHHHhhhCCC-----CccHHHHHHHHHHH
Q 019679          305 RPCLVELSEDP-----DVDVRFFATQALQS  329 (337)
Q Consensus       305 ~~~l~~l~~d~-----~~~vr~~a~~al~~  329 (337)
                      .|-|.+++..+     ..+|...|.+-|..
T Consensus        98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~  127 (134)
T 3ut4_A           98 KSELERLSSLEIINEDIREIVNLSKDYLHF  127 (134)
T ss_dssp             HHHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence            55565554433     23455555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-55
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-24
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-22
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-21
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-17
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-17
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	0.002
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.001
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-07
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-07
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	1e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	5e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	4e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.003
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.001

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  188 bits (478), Expect = 1e-55
 Identities = 195/333 (58%), Positives = 256/333 (76%), Gaps = 4/333 (1%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
            DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + C  
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311

Query: 61  LNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 116
           L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+FL+ 
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQ 371

Query: 117 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 176
           LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA 
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431

Query: 177 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
           QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M  +
Sbjct: 432 QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD 491

Query: 237 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 296
           P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D
Sbjct: 492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551

Query: 297 QSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
            S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 552 NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 6e-24
 Identities = 51/271 (18%), Positives = 105/271 (38%), Gaps = 2/271 (0%)

Query: 39  LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 98
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77

Query: 99  ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 158
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137

Query: 159 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 218
             +  R +      +   ++      + L         D    +R AAA+ +   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196

Query: 219 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 278
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256

Query: 279 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV 309
            +++ VA     L   V   + +  + P   
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQ 287

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (245), Expect = 2e-23
 Identities = 41/175 (23%), Positives = 75/175 (42%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
            D  WRVR  +   +  L   +G E     +    +  L D+   +R AA   + K+   
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
              E A   I+P V  +S D +   R      I  ++ + G+D T + +LP  L +  D 
Sbjct: 472 FGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP 531

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 175
             +VR N+   L ++  ++    L   + P + +L +D+   V+    E + +L+
Sbjct: 532 VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (235), Expect = 3e-22
 Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 4/230 (1%)

Query: 107 EQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 164
           + L PI   +  L++E   +RLN I KL  +   +G++     LLP + +   D    V 
Sbjct: 7   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVL 65

Query: 165 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 224
           LA+ E +    + +G   +   L          +   +RD A  +++ ++ E  P     
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 284
           H VP V  +     +  R +     S+  P + S +  ++L     N   D  P ++   
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAA 184

Query: 285 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334
           A  L     +++   V+  I P    L+ D    VR  A +A  +  Q++
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 8e-21
 Identities = 58/337 (17%), Positives = 122/337 (36%), Gaps = 6/337 (1%)

Query: 2   DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
           ++  ++R     +L  +  A+G E TRS+++P     + D + EV +A A ++     ++
Sbjct: 21  NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 79

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
                +  +LP ++ L++     VR      +  ++            +P+   L     
Sbjct: 80  GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG-D 138

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 181
                     L  V        +   L      L  D    VR A    +   A  L + 
Sbjct: 139 WFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 198

Query: 182 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY 241
               ++  +      D+  S+R  A      +A+    +     ++P + +   +  +  
Sbjct: 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRV 258

Query: 242 RMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIK----FNVAKVLQSLIPIVDQ 297
           R  +    + L   +G EIT + L+P   N  KD    ++      V +  ++L     +
Sbjct: 259 RYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318

Query: 298 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 334
           +V+   I PC+ EL  D +  V+      +     ++
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 5e-17
 Identities = 45/253 (17%), Positives = 113/253 (44%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
            D +  V+  +A+ +  L   +G + T   ++P ++  L+D   EVR+     +  +  +
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
           +      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L  + ++ L D 
Sbjct: 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
              +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  I +L+   G 
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513

Query: 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240
                 +    ++   D V ++R   A +++++            + P + ++  +    
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD 573

Query: 241 YRMTILQAISLLA 253
            +    +A+++L+
Sbjct: 574 VKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 7e-17
 Identities = 60/292 (20%), Positives = 107/292 (36%), Gaps = 1/292 (0%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
           +     V   +A QL      VG       ++P    L    E  VR  A   +  I   
Sbjct: 58  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
            +P     H +P VK L+           A  +  +       A   +L   F +L  D+
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDW-FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDD 176

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
            P VR    SKL +  +V+ +D +   ++P    LA D    VRL  +E    +A  L  
Sbjct: 177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236

Query: 181 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 240
              +  +     Q  +DK + +R   A+    L +  GP+     +VP    ++ +    
Sbjct: 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE 296

Query: 241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 292
            R      +      + ++   + ++  ++   K+ V +   +V   L S+I
Sbjct: 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI 348

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 49/277 (17%), Positives = 89/277 (32%), Gaps = 17/277 (6%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 57
                  R+M  N L    +       + +   VV   ++LL D   EV+  A   +  +
Sbjct: 13  TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72

Query: 58  CRILNPELAIQHILPCVKELSSDSSQHVRS----ALATVIMGMAPILGKDATIEQLLPIF 113
              +  E  ++ I+  +        + +R      L TVI  + P     A    +    
Sbjct: 73  VSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 114 LSLL-----KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLA 166
              L     K E   V+L  +  +  +    G  L     S+L  ++         VR  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKR 191

Query: 167 IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQ 224
            I  +  L    G   F D +  L  +  K+   S        +  ++ + G      ++
Sbjct: 192 TIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251

Query: 225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 261
            I+P V++  N      R   +QA          E+ 
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY 288

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 43/353 (12%), Positives = 112/353 (31%), Gaps = 20/353 (5%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR---------LLRDNEAEVRIAAA 51
           +    ++R + +  L  +   + P  + S +     +         + +  +  V++ A 
Sbjct: 93  LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL 152

Query: 52  GKVTKICRILNPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL 109
             +  +       L   H  IL C+    +     VR      +  +    G    ++ +
Sbjct: 153 DIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLI 212

Query: 110 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAI 167
             +   L K++        I  +  +++  G  +      ++P +V+        +R   
Sbjct: 213 EHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272

Query: 168 IEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 225
           I+       +           +  +C+++L        D    +   +  + G D     
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGS 332

Query: 226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFN 283
                    ++  +  R    + +  +       +      + P +I+  K+R  N+K +
Sbjct: 333 --DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 390

Query: 284 VAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 336
           V     SL+    + V      P  +E  E P   ++      +++  + M  
Sbjct: 391 VFHAYLSLL-KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 442

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 11/291 (3%)

Query: 41   DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL 100
               A +    A  VT    +   +L      P   + ++ + +    ++A  +  +    
Sbjct: 748  ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807

Query: 101  GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 160
             K+        I           +RL  +  L +V   I +    + L   I+E      
Sbjct: 808  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLE-LKSVILEAFSSPS 866

Query: 161  WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 220
              V+ A    +  ++      +    L  +  Q    + Y +  +    +   +      
Sbjct: 867  EEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIISSASVVGLKP 924

Query: 221  WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNI 280
            +    I   +L+         R  + + +  L  +         LLP +           
Sbjct: 925  YVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKGYLISGSSYA 978

Query: 281  KFNVAKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 329
            + +V   ++  I    Q +    K+     ++  EDPD++VR  A     S
Sbjct: 979  RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1029

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 33/239 (13%), Positives = 76/239 (31%), Gaps = 17/239 (7%)

Query: 2    DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 61
              +  +R +    L E+   +     + ++    +        EV+ AA+  +  I    
Sbjct: 826  RSTDSIRLLALLSLGEVGHHIDLS-GQLELKSVILEAFSSPSEEVKSAASYALGSISVG- 883

Query: 62   NPELAIQHILPCVKELSSDSSQHVRSALATV--IMGMAPILGKDATIEQLLPIFLSLLKD 119
                 +   LP V +  +   +     L ++  I+  A ++G    +E +  + L   + 
Sbjct: 884  ----NLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCEC 939

Query: 120  EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 179
                 R  +   L ++  +       ++LLP +           R +++  +    S   
Sbjct: 940  AEEGTRNVVAECLGKLTLI-----DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP 994

Query: 180  VGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 236
                          ++ L+D   ++R  A       A    P      +   VL  + N
Sbjct: 995  QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN-KPSLIRDLL-DTVLPHLYN 1051

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 14/167 (8%)

Query: 1    MDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 57
            +    + +Y++ + L E+  +      +P   ++    ++     E   R   A  + K+
Sbjct: 896  ITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 955

Query: 58   CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLS 115
              I    L     LP +K      S + RS++ T +        +  D  ++  +  FL 
Sbjct: 956  TLIDPETL-----LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLK 1010

Query: 116  LLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR 159
             L+D   +VR   +   +           DLL   +LP +    + R
Sbjct: 1011 TLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT-VLPHLYNETKVR 1056

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 225 HIVPQVLEMINNPHYLYR-------MTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 277
           + +  +LE + +    +R       MT LQ  S+       + +  +++ +++   +D+ 
Sbjct: 3   YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL----DDDSERKVVKMILKLLEDKN 58

Query: 278 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 329
             ++    K L  L+  V +  VE +I   L          +R  ++  L++
Sbjct: 59  GEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCTNMLSDKEQLRDISSIGLKT 109

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.8 bits (139), Expect = 2e-10
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 62/239 (25%)

Query: 2   DKSWRVRYM-VANQLY----ELCEAVGPEP--------TRSDVVPAYVRLLRDNEAEVRI 48
           D    V      ++ +     L      +P         R   V A   L+RD++  VR 
Sbjct: 25  DACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRR 84

Query: 49  AAAG-------------KVTKICRILNPELAIQHILPCVK-----ELSSDSSQHVRSALA 90
           A A              +  ++   +   L ++ +            +    +     L 
Sbjct: 85  AVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLF 144

Query: 91  TVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 150
             +      + K             + +D  P+VR  + S+L                  
Sbjct: 145 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR---------------GD 189

Query: 151 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN 209
            ++EL  D  W VRLA +E+  L A                ++ L +    +R A A  
Sbjct: 190 DLLELLHDPDWTVRLAAVEHASLEA----------------LRELDEPDPEVRLAIAGR 232

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 31/113 (27%)

Query: 20  EAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 79
             V     +     +   + +D E EVR   A ++                   + EL  
Sbjct: 152 RQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL---------------RGDDLLELLH 196

Query: 80  DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 132
           D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 197 DPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 33/268 (12%), Positives = 71/268 (26%), Gaps = 79/268 (29%)

Query: 62  NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 121
           NP LA+Q++        +D     R+              + + +E L P    L++D  
Sbjct: 43  NPHLAVQYL--------ADPFWERRAIAV-----------RYSPVEALTP----LIRDSD 79

Query: 122 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLG 179
             VR  +  +L +                 +  L  D    VR+ + +   +  L     
Sbjct: 80  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLPLEQLEQMAA 124

Query: 180 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 239
              +  +   +           +RD      K +A+    +         +  M  +P  
Sbjct: 125 DRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEES--------LGLMTQDPEP 176

Query: 240 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV 299
             R  +   +                   ++    D    ++    +             
Sbjct: 177 EVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVE------------- 208

Query: 300 VEKSIRPCLVELSEDPDVDVRFFATQAL 327
                    +   ++PD +VR      L
Sbjct: 209 ---HASLEALRELDEPDPEVRLAIAGRL 233

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 50  AAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT---I 106
           AAG    +      +  + H+LP +KE   +     R A       +            +
Sbjct: 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 107 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 154
            Q +P  + L+KD    VR      + ++ +++    ++   L  +++
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 43/310 (13%), Positives = 92/310 (29%), Gaps = 43/310 (13%)

Query: 5   WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILN 62
                     + +  +    +   ++++ A ++ +R  E    V++AA   +        
Sbjct: 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 205

Query: 63  P----ELAIQHILPCVKELSSDSSQHVRSALATVI---MGMAPILGKDATIEQLLPIFLS 115
                E     I+  V E +      VR A    +   M +     +      L  I + 
Sbjct: 206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265

Query: 116 LLKDEFPDVRLNIISKLDQVNQVIGIDLLS-----------------------QSLLPAI 152
            +K +  +V L  I     V        +                        Q L+P +
Sbjct: 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325

Query: 153 VELAEDR-------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDA 205
            +    +        W    A    + LLA+          L  +  + +K+  +  RDA
Sbjct: 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI-KEHIKNPDWRYRDA 384

Query: 206 AANNVKRLAEEFGPDWAMQH---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 262
           A      + E   P          +P ++E++ +P  + R T    +  +  ++      
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 444

Query: 263 SQLLPVVINA 272
              L  ++  
Sbjct: 445 DVYLAPLLQC 454

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 4   SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 63
                   A     L      +     V+P     +++ +   R AA      I     P
Sbjct: 339 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 398

Query: 64  ELAIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 119
                     +P + EL  D S  VR   A  +  +  +L + A  +  L   L  L +
Sbjct: 399 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 32/237 (13%), Positives = 65/237 (27%), Gaps = 16/237 (6%)

Query: 4   SWRVRYMVANQLYELCEAVGP--EPTRSDV-VPAYVRLLRDNEAEVRIAAAGKVTKICRI 60
             RVR      L ++        E           +  ++ +  EV +      + +C  
Sbjct: 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 288

Query: 61  LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 120
                               +S+         ++           + Q L        D+
Sbjct: 289 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---------PILTQTLTKQDENDDDD 339

Query: 121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 180
             +        L  +      D++   L P I E  ++  WR R A +     +      
Sbjct: 340 DWNPCKAAGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 398

Query: 181 GFFDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 234
                 +       ++ +KD    +RD AA  V R+ E           +  +L+ +
Sbjct: 399 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (97), Expect = 4e-05
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 45/294 (15%)

Query: 36  VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 95
            RLL D+ +  RI++A    ++ ++   + A++  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA----RVLQLRGGQDAVRLAI----EFCSDKNYIRRDIGAFILGQ 76

Query: 96  MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 155
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 156 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 215
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 216 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 275
               D  ++ +  +  E+                              ++L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 276 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQ 328
               +  ++ +    L         +K++ P L   L +  D ++   A   L+
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 20/147 (13%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 1   MDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 58
              S  +   V   +  L  ++G   E       P  ++ L   ++ V I A G +  I 
Sbjct: 608 KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667

Query: 59  RILNPELA--IQHILPCVKEL--SSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPI 112
             L  +       ++  + ++  + ++ + ++ A+ +V   +A  +G D    +  ++ +
Sbjct: 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727

Query: 113 FLSLLKDEFPDVRLNIISKLDQVNQVI 139
            ++    +  +  L  +    +V + +
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKVLEAV 754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 32/257 (12%), Positives = 75/257 (29%), Gaps = 16/257 (6%)

Query: 63  PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP 122
              A   I              + +A A +I  +A I        +L+ I +     E P
Sbjct: 89  SPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQP 148

Query: 123 D-VRLNIISKLDQVNQVIGIDLLSQ-----SLLPAIVELAEDRHW--RVRLAIIEYIPLL 174
           + V+   +  L  + +       +      ++L AIV+ A+       VRLA +  +   
Sbjct: 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208

Query: 175 ASQLGVGFFDDKLGALCMQW----LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 230
              +      +      MQ      + +   ++ AA   + ++  ++             
Sbjct: 209 LIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALY 268

Query: 231 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 290
              I              +   + +   EI  +  L     +               ++ 
Sbjct: 269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS----PLQSYNFALSSIKD 324

Query: 291 LIPIVDQSVVEKSIRPC 307
           ++P +   +  ++  P 
Sbjct: 325 VVPNLLNLLTRQNEDPE 341

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 33/269 (12%), Positives = 79/269 (29%), Gaps = 15/269 (5%)

Query: 28  RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKEL--SSDSS 82
            +  +P   +LL D +  V   AA  V ++ +      AI     ++  +     +++  
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 83  QHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLD---QVNQV 138
           +  R    T+        G  A  +   +P  + +L      V    I+ L       + 
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 139 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS------QLGVGFFDDKLGALCM 192
             + +     L  +V L    + +      + + +LA        + +     +     M
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 193 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 252
           +    +      +    V  +     P       +  +   + +P        L  +  L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 253 APVMGSEITCSQLLPVVINASKDRVPNIK 281
           +     +     LL  ++        N+ 
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.89
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.83
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.83
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.83
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.82
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.81
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.81
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.79
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.77
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.77
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.74
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.74
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.72
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.7
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.6
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.55
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.55
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.47
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.35
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.27
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.12
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.05
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.04
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.72
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.45
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.07
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.75
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	94.54
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	92.29
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.87
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	88.25
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.89
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	87.52
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.81
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	84.78
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	84.5
d1t06a_	235	Hypothetical protein BC3264 {Bacillus cereus (stra	80.17

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=303.98  Aligned_cols=330  Identities=59%  Similarity=0.981  Sum_probs=308.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhhhHhhHHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKEL   77 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~----~~~~~ll~~l~~l   77 (337)
                      |++|+||..++++++.++..++++...+.++|.+..++.|++++||..++..++.++..++..    ...+.++|.+...
T Consensus       253 D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~  332 (588)
T d1b3ua_         253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL  332 (588)
T ss_dssp             CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh
Confidence            889999999999999999999887777789999999999999999999999999998876643    3456788999999


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhc
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  157 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~  157 (337)
                      .+|+++.||..++.++..++...|.+...+.++|.+...++|++++||..++.+++.+...++...+.+.++|.+....+
T Consensus       333 ~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~  412 (588)
T d1b3ua_         333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE  412 (588)
T ss_dssp             HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred             hcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHh
Confidence            99999999999999999999888888888899999999999999999999999999999999888888999999999999


Q ss_pred             CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679          158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      |.+|++|..+++.++.+++.+|.+.+.+.+.|.+..++.|+.+.||.+|+.+++.+...+|.++....++|.+.+++.++
T Consensus       413 d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~  492 (588)
T d1b3ua_         413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP  492 (588)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999888889999999999999999999999999999999999888888999999999999


Q ss_pred             chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCc
Q 019679          238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  317 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  317 (337)
                      +|.+|.+++.+++.+.+.++.+.+.++++|.++++++|+.++||.+++++|+.+...++++.+...+.|.+.++.+|+|.
T Consensus       493 ~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~  572 (588)
T d1b3ua_         493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV  572 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSH
T ss_pred             CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCH
Confidence            99999999999999999888888889999999999999999999999999999999999888888999999999999999


Q ss_pred             cHHHHHHHHHHHHH
Q 019679          318 DVRFFATQALQSKD  331 (337)
Q Consensus       318 ~vr~~a~~al~~l~  331 (337)
                      +||+.|.+|+..++
T Consensus       573 dVr~~A~~al~~l~  586 (588)
T d1b3ua_         573 DVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-38  Score=284.47  Aligned_cols=333  Identities=24%  Similarity=0.367  Sum_probs=243.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.||+.++.+++.++...+.+...+.++|.+.++++|+++.||..++.++..++..++.+.....++|.+.++++|+
T Consensus       175 D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~  254 (588)
T d1b3ua_         175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK  254 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccc
Confidence            88999999999999999999888877789999999999999999999999999999999999888888999999999999


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh----hHHhhHHHHHHHHhc
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAE  157 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~  157 (337)
                      +|.||..++++++.+...++++.....++|.+..+++|++++||..++.+++.++..++.+    ...+.++|.+....+
T Consensus       255 ~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~  334 (588)
T d1b3ua_         255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS  334 (588)
T ss_dssp             SHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred             cHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhc
Confidence            9999999999999999999988777889999999999999999999999999998876643    234567777777777


Q ss_pred             CCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCc
Q 019679          158 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  237 (337)
Q Consensus       158 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~  237 (337)
                      |.++.+|..++..+..++..+|.....+.++|.+...++|+++.||..++.+++.+...+|.....+.++|.+.+.++|+
T Consensus       335 d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~  414 (588)
T d1b3ua_         335 DANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA  414 (588)
T ss_dssp             CSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS
T ss_pred             CCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcc
Confidence            77777777777777777666665555555555555555555555555555555555555554444444555555555555


Q ss_pred             chHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHH--------------------------
Q 019679          238 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL--------------------------  291 (337)
Q Consensus       238 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i--------------------------  291 (337)
                      +|++|.+++.+++.++..+|.+.+.+.+.|.+..++.|+...||.+|+++++.+                          
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~  494 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY  494 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred             cHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCH
Confidence            555555555555555544444444444445555555555555555555554444                          


Q ss_pred             -------------hhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          292 -------------IPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       292 -------------~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                                   .+.++.+.+.++++|.+.++++|+.++||..++++++.+...+
T Consensus       495 ~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~  550 (588)
T d1b3ua_         495 LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL  550 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence                         4444444455566666666666666666666666666665544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-21  Score=185.10  Aligned_cols=332  Identities=14%  Similarity=0.096  Sum_probs=248.2

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhhhHhhHHhcCC
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSD   80 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--~~~~~ll~~l~~l~~d   80 (337)
                      ..|.+|+.++.+++.++..++.+. .+.++|.+.+.+.++++.+|++|+.+++.+++.+...  .+...++|.+...++|
T Consensus       369 ~~~~~r~~a~~~L~~l~~~~~~~i-l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d  447 (888)
T d1qbkb_         369 SDWNLRKCSAAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD  447 (888)
T ss_dssp             SCCSSHHHHHHHSTTTTTTCCSSS-HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTS
T ss_pred             hhhhHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccC
Confidence            568899999999999998777765 4789999999999999999999999999998865443  3456688899999999


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhh---HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHH
Q 019679           81 SSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVEL  155 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~  155 (337)
                      +++.||..++.+++.+++....+.   ....+++.+...+.|+++.||.+|+.++..+.+..+..  .+.+.+++.+...
T Consensus       448 ~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~  527 (888)
T d1qbkb_         448 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA  527 (888)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999987654322   34678889999999999999999999999999877643  2346677777777


Q ss_pred             hcCCchHHHHHHHHHhhHhHhhhChh----hHHHHHHHHHHHHcc-----------------------------------
Q 019679          156 AEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKLGALCMQWLK-----------------------------------  196 (337)
Q Consensus       156 ~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~-----------------------------------  196 (337)
                      +++.+...+..+.++++.++...+..    .+.+.++|.+.....                                   
T Consensus       528 l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~  607 (888)
T d1qbkb_         528 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVY  607 (888)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHH
Confidence            77777777777777776666554332    122233333322111                                   


Q ss_pred             -------------------------ccchHHHHHHHHHHHHHHHHhChHH--H--HhhHHHHHHHhhcCcchHHHHHHHH
Q 019679          197 -------------------------DKVYSIRDAAANNVKRLAEEFGPDW--A--MQHIVPQVLEMINNPHYLYRMTILQ  247 (337)
Q Consensus       197 -------------------------d~~~~vr~~a~~~l~~~~~~~~~~~--~--~~~l~~~l~~~~~~~~~~vR~~~~~  247 (337)
                                               +....+...+...++.+.+.+|...  +  ...+++.+...+++.+..+|..+..
T Consensus       608 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~  687 (888)
T d1qbkb_         608 QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFA  687 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHH
Confidence                                     1122334444555555555555421  1  1246788888899999999999999


Q ss_pred             HHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCC--ccHHH
Q 019679          248 AISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRF  321 (337)
Q Consensus       248 ~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~--~~vr~  321 (337)
                      +++.++..++..  .+.+.++|.+...+.++..+|+.+++.++|.++...|.+  .+...+++.|...+++++  ..|+.
T Consensus       688 llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~  767 (888)
T d1qbkb_         688 LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLE  767 (888)
T ss_dssp             HHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHH
Confidence            999998766643  456789999999999999999999999999999888764  234567777777666543  45889


Q ss_pred             HHHHHHHHHHHhhh
Q 019679          322 FATQALQSKDQVMM  335 (337)
Q Consensus       322 ~a~~al~~l~~~~~  335 (337)
                      .++.+|+.++...+
T Consensus       768 n~~~~lgrl~~~~p  781 (888)
T d1qbkb_         768 NTAITIGRLGYVCP  781 (888)
T ss_dssp             HHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHCH
Confidence            99999998876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-19  Score=158.08  Aligned_cols=305  Identities=16%  Similarity=0.177  Sum_probs=232.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHHH---HHHhhhHhhHHhcC--
Q 019679            7 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPEL---AIQHILPCVKELSS--   79 (337)
Q Consensus         7 vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~~~~~~~~~~---~~~~ll~~l~~l~~--   79 (337)
                      +|+.++.++..++....+...|+++++.+.+.+.+  .++.+|..++.++..+.....+..   ....+++.+.+.++  
T Consensus       104 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~  183 (458)
T d1ibrb_         104 RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE  183 (458)
T ss_dssp             SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc
Confidence            45566788888888776666688999999999865  457889999999999988776542   33456666666664  


Q ss_pred             CCcHHHHHHHHHHHHhcCcccChh----hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHH
Q 019679           80 DSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAI  152 (337)
Q Consensus        80 d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l  152 (337)
                      +.+..+|..++++++.+.......    .....+.+.+...+.++++++|..++.++..+++..+..   .+.+.+.+.+
T Consensus       184 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~  263 (458)
T d1ibrb_         184 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAIT  263 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467899999999999988755432    233467788888999999999999999999998876532   2234455556


Q ss_pred             HHHhcCCchHHHHHHHHHhhHhHhhhC-----------------------hhhHHHHHHHHHHHHcc-------ccchHH
Q 019679          153 VELAEDRHWRVRLAIIEYIPLLASQLG-----------------------VGFFDDKLGALCMQWLK-------DKVYSI  202 (337)
Q Consensus       153 ~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~~~l~~~l~-------d~~~~v  202 (337)
                      .....+.+..++..+++.+..++....                       .....+.+.|.+.+.+.       |.++.+
T Consensus       264 ~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  343 (458)
T d1ibrb_         264 IEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNP  343 (458)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccH
Confidence            666778888899988888877764321                       01234556677666653       455689


Q ss_pred             HHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCChh
Q 019679          203 RDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPN  279 (337)
Q Consensus       203 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~  279 (337)
                      |..+..++..++..+|.+ ..+.+++.+.+.+++++|.+|.+++.+++.+++....+   .+.+.++|.+..+++|+++.
T Consensus       344 ~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         344 CKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999988755 56789999999999999999999999999999766433   35678999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcHHHH-HHhhhHHHHhhh
Q 019679          280 IKFNVAKVLQSLIPIVDQSVV-EKSIRPCLVELS  312 (337)
Q Consensus       280 vr~~a~~~l~~i~~~~~~~~~-~~~i~~~l~~l~  312 (337)
                      ||.+|+.+|+.+++.++.... ...+.|.+..++
T Consensus       423 VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             HHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence            999999999999988875432 234555555444

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-18  Score=164.03  Aligned_cols=332  Identities=15%  Similarity=0.140  Sum_probs=237.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhhhHhhHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKE   76 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~---~~~~~~ll~~l~~   76 (337)
                      +++|.+|.+++.+++.++.....  ....++++|.+.+.+.|+++.||..++.+++++++.+.+   +.+...+++.+.+
T Consensus       406 s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~  485 (888)
T d1qbkb_         406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK  485 (888)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHH
T ss_pred             cchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence            68999999999999998753322  122467899999999999999999999999999886543   2344567788888


Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh----hHHhhHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLP  150 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~llp  150 (337)
                      .+.|++++||..++.++..+.+..+...  ..+.+++.+...+.+.+...+..+..+++.+....+..    .+.+.++|
T Consensus       486 ~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~  565 (888)
T d1qbkb_         486 RILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMP  565 (888)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence            8899999999999999999987666432  34677888888888888888888888887777655432    12222333


Q ss_pred             HHHHHh------------------------------------------------------------cCCchHHHHHHHHH
Q 019679          151 AIVELA------------------------------------------------------------EDRHWRVRLAIIEY  170 (337)
Q Consensus       151 ~l~~~~------------------------------------------------------------~d~~~~vr~~~~~~  170 (337)
                      .+....                                                            ...+......+...
T Consensus       566 ~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  645 (888)
T d1qbkb_         566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL  645 (888)
T ss_dssp             HHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence            322211                                                            11122333444455


Q ss_pred             hhHhHhhhChhh--HH--HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcchHHHHH
Q 019679          171 IPLLASQLGVGF--FD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMT  244 (337)
Q Consensus       171 l~~l~~~~~~~~--~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~vR~~  244 (337)
                      ++.+++.+|...  +.  ..+.+.+...++|.++.||+.+...++.++...+..  .+.+.++|.+.+.+.++.+.++.+
T Consensus       646 l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~  725 (888)
T d1qbkb_         646 LSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN  725 (888)
T ss_dssp             HHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            555555555432  11  136788888999999999999999999999887654  245678899999999999999999


Q ss_pred             HHHHHHHhccccChH--HHHhhHHHHHHhhccCCC--hhHHHHHHHHHHHHhhhhcHHH--HHHhhhHHHHh-hhCCCCc
Q 019679          245 ILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSV--VEKSIRPCLVE-LSEDPDV  317 (337)
Q Consensus       245 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~-l~~d~~~  317 (337)
                      +++++|.++...|.+  ++.+.+++.+...++++.  ..|+.+++.++|.++...+...  +...+++.+.. +..-.+.
T Consensus       726 a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~  805 (888)
T d1qbkb_         726 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDN  805 (888)
T ss_dssp             HHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCS
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCc
Confidence            999999998877754  355678888888887654  4699999999999988766542  23444444444 3332344


Q ss_pred             cHHHHHHHHHHHHHHh
Q 019679          318 DVRFFATQALQSKDQV  333 (337)
Q Consensus       318 ~vr~~a~~al~~l~~~  333 (337)
                      +-+..+..++..+.+.
T Consensus       806 ~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         806 EEKDSAFRGICTMISV  821 (888)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4566777777666643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.5e-17  Score=152.73  Aligned_cols=333  Identities=13%  Similarity=0.109  Sum_probs=249.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHH--HH---HHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPE--LA---IQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~~~~~~~~~--~~---~~~ll~~l~   75 (337)
                      |++..||..++.+++.++..-.++..|++++|.+.+.+.+++ ..+|..++.++..+++..++.  .+   ...+++.+.
T Consensus       106 ~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~  185 (861)
T d2bpta1         106 SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV  185 (861)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999887776668999999999997654 678999999999998876543  11   122333332


Q ss_pred             H-h-cCCCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHh
Q 019679           76 E-L-SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQ  146 (337)
Q Consensus        76 ~-l-~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~  146 (337)
                      + + ..+.+..+|..++.+++.+...++...    ....+++.+...+++.++.+|..++.++..+++..+..   .+.+
T Consensus       186 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~  265 (861)
T d2bpta1         186 QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ  265 (861)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2 256788999999999999887665322    23567788889999999999999999999998876532   1222


Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh-------------------hhHHHHHHHHHHHHcc-------ccch
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-------------------GFFDDKLGALCMQWLK-------DKVY  200 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~~l~-------d~~~  200 (337)
                      .+.+.+....++.++.+|..+.+.+..++.....                   ....+.++|.+.+.+.       +..+
T Consensus       266 ~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~  345 (861)
T d2bpta1         266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDW  345 (861)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCC
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence            3334445566788899999998888777654210                   1234557777777764       3456


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCC
Q 019679          201 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRV  277 (337)
Q Consensus       201 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~  277 (337)
                      .+|..+..++..+....+.+ ..+.+.+.+.....+.+|..|.+++.+++.++...+..   .+.+.++|.+...+.|++
T Consensus       346 ~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~  424 (861)
T d2bpta1         346 NVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS  424 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHHHHhhcchh-hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcc
Confidence            89999999999999888654 45667788888888999999999999999999887754   345678999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          278 PNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       278 ~~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +.||.+++.+++.+++.+++.    .....+++.+.....+ .+.++..++.++..+...+.+
T Consensus       425 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~  486 (861)
T d2bpta1         425 LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAE  486 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSS
T ss_pred             hhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999887653    2234445555444444 677888888888887766543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.5e-18  Score=166.48  Aligned_cols=332  Identities=16%  Similarity=0.149  Sum_probs=247.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHh
Q 019679            1 MDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL   77 (337)
Q Consensus         1 ~D~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l   77 (337)
                      .|+++..|.+++.-+.........   +.....+++.+.+.++|++++||..|+.+++.++..++.+.. ..+++.+...
T Consensus        13 ~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-~~l~~~L~~~   91 (1207)
T d1u6gc_          13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ETIVDTLCTN   91 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HHHHHHHHHH
T ss_pred             CCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHH
Confidence            488999999998877665532221   222346899999999999999999999999999999887654 5677777777


Q ss_pred             cCCCcHHHHHHHHHHHHhcCcccChh--------hHHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchh--hHHh
Q 019679           78 SSDSSQHVRSALATVIMGMAPILGKD--------ATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID--LLSQ  146 (337)
Q Consensus        78 ~~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~  146 (337)
                      +.++++.+|..+..++..+...++..        .....+++.+...+. ..++.+|..++..+..+....|..  ....
T Consensus        92 l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~  171 (1207)
T d1u6gc_          92 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHP  171 (1207)
T ss_dssp             TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHH
T ss_pred             hcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence            77888889999888887765544321        122445555555554 456899999999999999888742  2346


Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHH-HccccchHHHHHHHHHHHHHHHHhChHH--HH
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGPDW--AM  223 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~  223 (337)
                      .+++.+...++++++.+|..++.+++.++..++...+.+ +++.++. +..+.++.+|..++.+++.++...|...  +.
T Consensus       172 ~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l  250 (1207)
T d1u6gc_         172 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL  250 (1207)
T ss_dssp             HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT-HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHH
Confidence            688888888999999999999999999998887654433 4444444 4456777888899999999998876532  35


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhh-----------------------------
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINA-----------------------------  272 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~-----------------------------  272 (337)
                      +.++|.+...+.+.+..+|..++.++..+...++.+  .+...+++.+..+                             
T Consensus       251 ~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~  330 (1207)
T d1u6gc_         251 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ  330 (1207)
T ss_dssp             TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------------
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhh
Confidence            678999999999999999999999999987666532  2233343333322                             


Q ss_pred             --------ccCCChhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          273 --------SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       273 --------l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                              ..|..+.+|.+++++|+.+....+..  .+...+.|.+...++|.++.||..+..++..+....
T Consensus       331 ~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~  402 (1207)
T d1u6gc_         331 GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQT  402 (1207)
T ss_dssp             -----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhc
Confidence                    34567899999999999998765532  345778999999999999999999999999887654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.1e-18  Score=168.03  Aligned_cols=332  Identities=15%  Similarity=0.158  Sum_probs=250.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--------HHHHhhhHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--------LAIQHILPC   73 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~--------~~~~~ll~~   73 (337)
                      |+++.||..++++++.++..+++.. ...+++.+...+.+++..+|..+..++..+...++..        .....+++.
T Consensus        56 D~~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~  134 (1207)
T d1u6gc_          56 DKNGEVQNLAVKCLGPLVSKVKEYQ-VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGR  134 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCcHhh-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence            8999999999999999998776554 4678888888888899999999999998888766543        233445555


Q ss_pred             hHHh-cCCCcHHHHHHHHHHHHhcCcccChhh--HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHH
Q 019679           74 VKEL-SSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  150 (337)
Q Consensus        74 l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp  150 (337)
                      +... .+.+++.+|..++..++.+...+|...  ....+++.+...+.++++.||+.|+.+++.++...+.+.+ +.+++
T Consensus       135 l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~  213 (1207)
T d1u6gc_         135 LTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIE  213 (1207)
T ss_dssp             HHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHH
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHH
Confidence            5443 456788999999999998887777432  2467888899999999999999999999999988876655 34444


Q ss_pred             HHH-HHhcCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHH--HHhh
Q 019679          151 AIV-ELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQH  225 (337)
Q Consensus       151 ~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~  225 (337)
                      .+. .+..+.++.+|..++.+++.++...|...  +.+.++|.+...+.+++.++|+.++.++..+....+.+.  +...
T Consensus       214 ~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~  293 (1207)
T d1u6gc_         214 HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST  293 (1207)
T ss_dssp             HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHH
Confidence            444 45567778888888999999988776543  446799999999999999999999999999987664321  1222


Q ss_pred             HHHHHHHh-------------------------------------hcCcchHHHHHHHHHHHHhccccCh--HHHHhhHH
Q 019679          226 IVPQVLEM-------------------------------------INNPHYLYRMTILQAISLLAPVMGS--EITCSQLL  266 (337)
Q Consensus       226 l~~~l~~~-------------------------------------~~~~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~  266 (337)
                      +++.+...                                     ..|.+|.+|.+++.++..+....+.  ..+...++
T Consensus       294 ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~  373 (1207)
T d1u6gc_         294 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS  373 (1207)
T ss_dssp             HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33332222                                     2245799999999999999766553  33566789


Q ss_pred             HHHHhhccCCChhHHHHHHHHHHHHhhhhcH---------------------HHHHHhhhHHHHhhhCCCCccHHHHHHH
Q 019679          267 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------------------SVVEKSIRPCLVELSEDPDVDVRFFATQ  325 (337)
Q Consensus       267 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---------------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~  325 (337)
                      |.+...+.|.++.||..++.++..+....+.                     ......+.+.+.+...++++.+|..+..
T Consensus       374 ~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~  453 (1207)
T d1u6gc_         374 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN  453 (1207)
T ss_dssp             HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHH
Confidence            9999999999999999999999988754321                     0122346667777788999999999999


Q ss_pred             HHHHHHHhhh
Q 019679          326 ALQSKDQVMM  335 (337)
Q Consensus       326 al~~l~~~~~  335 (337)
                      .+..+...++
T Consensus       454 ~l~~l~~~~~  463 (1207)
T d1u6gc_         454 MLTELVNVLP  463 (1207)
T ss_dssp             HHHHHHHHST
T ss_pred             HHHHHHHHcc
Confidence            9999887665

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.5e-16  Score=149.51  Aligned_cols=327  Identities=16%  Similarity=0.164  Sum_probs=248.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHHHH---HHhhhHhhHHhcC-
Q 019679            6 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSS-   79 (337)
Q Consensus         6 ~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~~~~~~~~~~~---~~~ll~~l~~l~~-   79 (337)
                      .+|+.++.+++.++..--|...|++++|.+.+.+.++  ...+|.+++.++..+++.+.++..   ...+++.+.+.+. 
T Consensus       104 ~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~  183 (876)
T d1qgra_         104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK  183 (876)
T ss_dssp             SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcC
Confidence            4567788999999987655445799999999998654  478999999999999988877633   3446666666554 


Q ss_pred             -CCcHHHHHHHHHHHHhcCcccChh----hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHH
Q 019679           80 -DSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPA  151 (337)
Q Consensus        80 -d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~  151 (337)
                       +++..+|..+++++..........    .....+++.+...+.++++.+|..+++++..+.+.....   .+.+.+.+.
T Consensus       184 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~  263 (876)
T d1qgra_         184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI  263 (876)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             456799999999998877654432    233567888888899999999999999999998876532   223456666


Q ss_pred             HHHHhcCCchHHHHHHHHHhhHhHhhhC-----------------------hhhHHHHHHHHHHHHcc-------ccchH
Q 019679          152 IVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------VGFFDDKLGALCMQWLK-------DKVYS  201 (337)
Q Consensus       152 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~~~l~~~l~-------d~~~~  201 (337)
                      +.....+....++..+++.+..++....                       .....+.+.|.+...+.       +..+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  343 (876)
T d1qgra_         264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN  343 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccch
Confidence            6777778888888887777766654210                       11234556677666653       34567


Q ss_pred             HHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChH---HHHhhHHHHHHhhccCCCh
Q 019679          202 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVP  278 (337)
Q Consensus       202 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~  278 (337)
                      +|.++..++..+....+.+ ..+.+++.+.+.+.+++|+.|.+++..++.+.......   .+...+++.+...+.|+++
T Consensus       344 ~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            9999999999999888654 56778899999999999999999999999998877654   3456788999999999999


Q ss_pred             hHHHHHHHHHHHHhhhhcHH----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          279 NIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       279 ~vr~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      .||.+++.+++.+++.++..    .+...+.+.+....++ ++.++..++.++..+....
T Consensus       423 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~  481 (876)
T d1qgra_         423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877643    2345566777666655 7889999999998887643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.9e-18  Score=147.12  Aligned_cols=331  Identities=15%  Similarity=0.135  Sum_probs=239.5

Q ss_pred             ChHHHHHHHHHHHHHHHHhC--------------CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 019679            4 SWRVRYMVANQLYELCEAVG--------------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH   69 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~--------------~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~   69 (337)
                      ...+|..++..+........              +......+.+.+.+.+.++++.+| .++..+..++....+......
T Consensus        49 ~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~  127 (458)
T d1ibrb_          49 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPE  127 (458)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTT
T ss_pred             CHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcc
Confidence            45788888877765543211              111133566677788877766544 456677776665433322245


Q ss_pred             hhHhhHHhcCC--CcHHHHHHHHHHHHhcCcccChhh---HHhhhHHHHHHhhcC--CChhHHHHHHHhHHHhHhhhch-
Q 019679           70 ILPCVKELSSD--SSQHVRSALATVIMGMAPILGKDA---TIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGI-  141 (337)
Q Consensus        70 ll~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~-  141 (337)
                      +++.+.+.+.+  .++.+|..++.+++.+........   ....+++.+...+.+  .+..+|..+++++..+...... 
T Consensus       128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  207 (458)
T d1ibrb_         128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  207 (458)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred             hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence            66666665543  567889999999988876554332   345678888888865  4578999999999988765432 


Q ss_pred             ---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhh---HHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          142 ---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       142 ---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                         +...+.+.+.+....+++++.+|..++.++..+++..+...   ..+.+.+.+.....+....++..++..+..+++
T Consensus       208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence               23445678888888999999999999999999988765421   223355566667788889999999988888765


Q ss_pred             HhCh-----------------------HHHHhhHHHHHHHhhc-------CcchHHHHHHHHHHHHhccccChHHHHhhH
Q 019679          216 EFGP-----------------------DWAMQHIVPQVLEMIN-------NPHYLYRMTILQAISLLAPVMGSEITCSQL  265 (337)
Q Consensus       216 ~~~~-----------------------~~~~~~l~~~l~~~~~-------~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l  265 (337)
                      ....                       ....+.+.|.+.+...       +.+|.+|..+..++..++...|.+ ..+.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l  366 (458)
T d1ibrb_         288 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHV  366 (458)
T ss_dssp             HHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHH
T ss_pred             HHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHH
Confidence            3210                       0123445666666553       345789999999999999888865 56789


Q ss_pred             HHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhhhC
Q 019679          266 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       266 ~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +|.+.+.+.++++.+|.+++.+|+.+++..+..   .+...++|.+..+++|+++.||..|+++|+.+++.++.
T Consensus       367 ~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         367 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999998765433   24567889999999999999999999999999987753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.3e-17  Score=132.67  Aligned_cols=253  Identities=19%  Similarity=0.131  Sum_probs=192.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -.+.+.++++|+++.||..|+..|+.++.        +..+|.+.++++|+++.||..++.+|+.+....+..   +...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchH
Confidence            35667899999999999999999997754        246788889999999999999999999987644332   2223


Q ss_pred             H-HHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHH
Q 019679          111 P-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  189 (337)
Q Consensus       111 ~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  189 (337)
                      + .+..+++|+++.||..++.+++.+...-+  ...+.+++.+.....|.++.+|..++..++.+..        +..++
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence            3 34445789999999999999999876532  2235688889999999999999998877765432        23456


Q ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHH
Q 019679          190 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  269 (337)
Q Consensus       190 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l  269 (337)
                      .+..++.+.++.++..+...++.+..  +    .....+.+...+.++++.+|..+..+++.+..        ...+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhc--c----ccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHH
Confidence            77788899999999988777665322  1    12456667778889999999999988887542        3456778


Q ss_pred             HhhccCCChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhC-CCCccHHHHHHHHHH
Q 019679          270 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQ  328 (337)
Q Consensus       270 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~  328 (337)
                      ...+.|+  .||..++.+|+.++.        ...+|.|..++. +++.+||..|+++|.
T Consensus       225 ~~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            8888765  699999999998863        457777777554 467899999998874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.2e-16  Score=136.87  Aligned_cols=333  Identities=12%  Similarity=0.065  Sum_probs=243.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHh
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE---LAIQHILPC   73 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~   73 (337)
                      .+++.++..++.++..+...-...    .....++|.+.+++.+ +++++|..++.+|..++...+..   ......+|.
T Consensus        24 s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~  103 (434)
T d1q1sc_          24 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  103 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhh
Confidence            457889999999998886533322    1234589999999965 46889999999999998653322   234557888


Q ss_pred             hHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCCh-----hHHHHHHHhHHHhHhhhc---hh
Q 019679           74 VKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIG---ID  142 (337)
Q Consensus        74 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~---~~  142 (337)
                      +.++++++++.++..++.++++++.....   .......++.+..++...+.     .....++..+..+.....   ..
T Consensus       104 l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (434)
T d1q1sc_         104 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  183 (434)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchh
Confidence            99999999999999999999998753221   12234677788888765432     222334444555443321   11


Q ss_pred             hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChh---hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh
Q 019679          143 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  219 (337)
Q Consensus       143 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  219 (337)
                      .....++|.+..++.+.++.++..++.++..++......   .....++|.+..+++++++.++..++.+++.++..-+.
T Consensus       184 ~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~  263 (434)
T d1q1sc_         184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE  263 (434)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhH
Confidence            234668899999999999999999999998887543211   12234778889999999999999999999988642211


Q ss_pred             ---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H-HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhh
Q 019679          220 ---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  293 (337)
Q Consensus       220 ---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  293 (337)
                         .......++.+..++.+++..+|..++.++..++.....  . .....++|.+...+.++++.+|..++.+++.+..
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence               122345677888999999999999999999999864322  1 2334588999999999999999999999999987


Q ss_pred             hhcHHH----HHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHhh
Q 019679          294 IVDQSV----VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       294 ~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~~  334 (337)
                      ...++.    ....+++.|..++++++++++..+.++|..+.+..
T Consensus       344 ~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         344 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            765542    23346888889999999999999999999887643

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.7e-16  Score=147.32  Aligned_cols=333  Identities=12%  Similarity=0.151  Sum_probs=245.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |.+|.+|..+..++..++...+... .+.+.+.+.....++++..|.++...++.+.+.....   .+.+.+++.+.+.+
T Consensus       342 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l  420 (861)
T d2bpta1         342 DDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM  420 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHh
Confidence            4678899999999999999888765 4677888888999999999999999999998877765   34566888999999


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hH---HhhH
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LL---SQSL  148 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~---~~~l  148 (337)
                      +|+++.||..++.+++.+++.+++...    ...+++.+..... .++.++..++.++..+.......   ..   ...+
T Consensus       421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  499 (861)
T d2bpta1         421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPAL  499 (861)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHH
T ss_pred             cCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc-cChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhH
Confidence            999999999999999999877664332    2344555555554 46788888888887777665432   12   2233


Q ss_pred             HHHHHHHh--cCCchHHHHHHHHHhhHhHhhhChhh--HHHHHHHHHHHHc----ccc-----------chHHHHHHHHH
Q 019679          149 LPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL----KDK-----------VYSIRDAAANN  209 (337)
Q Consensus       149 lp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l----~d~-----------~~~vr~~a~~~  209 (337)
                      +..+....  .+.+..+|..+..++..++...+...  +...+.+.+...+    ...           ...++..+...
T Consensus       500 ~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (861)
T d2bpta1         500 VDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV  579 (861)
T ss_dssp             HHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHH
Confidence            44444433  35667899999999999988876543  2233444433332    211           12455666667


Q ss_pred             HHHHHHHhChH--HHHhhHHHHHHHhhcCc-chHHHHHHHHHHHHhccccChH--HHHhhHHHHHHhhccCCChhHHHHH
Q 019679          210 VKRLAEEFGPD--WAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNV  284 (337)
Q Consensus       210 l~~~~~~~~~~--~~~~~l~~~l~~~~~~~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a  284 (337)
                      ++.+....+..  .+.+.+++.+.+.+.+. ++.+|..++.+++.++..+|.+  .+.+.++|.+...+.|.++.||..+
T Consensus       580 l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a  659 (861)
T d2bpta1         580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA  659 (861)
T ss_dssp             HHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHH
Confidence            77776665433  23456777777777654 4778999999999998877754  4667899999999999999999999


Q ss_pred             HHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679          285 AKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       285 ~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~  336 (337)
                      +..++.++..++..  .+...+++.|.+.+.++  +.++|..+..+++.++..+|+
T Consensus       660 ~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888764  34566777777766554  568999999999999988774

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.2e-15  Score=132.16  Aligned_cols=327  Identities=11%  Similarity=0.115  Sum_probs=237.6

Q ss_pred             CChHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhhhHhhHH
Q 019679            3 KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKE   76 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~-~~~~~ll~~l~~   76 (337)
                      +++.+|+.++.++..++..-..   .......+|.+.+++.++++++++.++.+|..++.....  . ......++.+..
T Consensus        69 ~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~  148 (434)
T d1q1sc_          69 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA  148 (434)
T ss_dssp             GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHH
Confidence            4678999999999999843221   112345799999999999999999999999998754222  1 223345565655


Q ss_pred             hcCCCc-----HHHHHHHHHHHHhcCcccC---hhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchh---hHH
Q 019679           77 LSSDSS-----QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLS  145 (337)
Q Consensus        77 l~~d~~-----~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~  145 (337)
                      ++...+     ......++..+..+.....   .......++|.+..++.+.+++++..++.++..+.......   ...
T Consensus       149 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  228 (434)
T d1q1sc_         149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK  228 (434)
T ss_dssp             HTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhh
Confidence            554332     1233445556666654322   22345678899999999999999999999999987653211   123


Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh--H
Q 019679          146 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--D  220 (337)
Q Consensus       146 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~  220 (337)
                      ..++|.+.+++.+.++.++..++..+..++..-..   .......++.+.+++++++..+|..++.++..++.....  .
T Consensus       229 ~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  308 (434)
T d1q1sc_         229 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ  308 (434)
T ss_dssp             TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHH
Confidence            45889999999999999999999999888753211   122334667788899999999999999999998753211  1


Q ss_pred             -HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHH----HHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhh
Q 019679          221 -WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  295 (337)
Q Consensus       221 -~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~  295 (337)
                       .....++|.+...+.++++.+|..++.+++.++...+.+.    ....+++.+..++.+++++++..++.++..+.+..
T Consensus       309 ~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~  388 (434)
T d1q1sc_         309 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA  388 (434)
T ss_dssp             HHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence             1234688999999999999999999999999987665442    23456899999999999999999999998886532


Q ss_pred             c----HHHHH-----HhhhHHHHhhhCCCCccHHHHHHHHHHH
Q 019679          296 D----QSVVE-----KSIRPCLVELSEDPDVDVRFFATQALQS  329 (337)
Q Consensus       296 ~----~~~~~-----~~i~~~l~~l~~d~~~~vr~~a~~al~~  329 (337)
                      .    .+.+.     ....+.+..+..+++++|+..|.+.|..
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             HTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            2    12221     2356778889999999999999988865

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.7e-16  Score=129.02  Aligned_cols=243  Identities=16%  Similarity=0.084  Sum_probs=185.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhh-HhhHHhcCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL-PCVKELSSD   80 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll-~~l~~l~~d   80 (337)
                      |+++.||..++..|+.+..        +..+|.+.++++|+++.||..++.+|+.+.......   ...+ ..+..+++|
T Consensus        30 d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~~~l~~~~l~d   98 (276)
T d1oyza_          30 DHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALND   98 (276)
T ss_dssp             CSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchHHHHHHHHhcC
Confidence            7899999999999998752        467899999999999999999999999876443322   1222 234557889


Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCc
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  160 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~  160 (337)
                      +++.||..++.+++.++...+  .....+++.+...+.|.++.||..++.+++.+..        +..++.+..+..+.+
T Consensus        99 ~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~~l~~l~~~~~  168 (276)
T d1oyza_          99 KSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPLLINLLKDPN  168 (276)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHHHHHHHTCSS
T ss_pred             CChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHHHHHHhccccc
Confidence            999999999999998875332  2235688999999999999999999888776543        345677778888999


Q ss_pred             hHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchH
Q 019679          161 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  240 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  240 (337)
                      +.++..+...+......      .....+.+...+.++++.+|..+..+++.+    +.    +..+|.+.+.+.|++  
T Consensus       169 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~----~~~~~~L~~~l~d~~--  232 (276)
T d1oyza_         169 GDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----KD----KRVLSVLCDELKKNT--  232 (276)
T ss_dssp             HHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT----TC----GGGHHHHHHHHTSSS--
T ss_pred             chhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchh----hh----hhhHHHHHHHhCChH--
Confidence            99998877666544322      134566778889999999999999988754    22    246777888888765  


Q ss_pred             HHHHHHHHHHHhccccChHHHHhhHHHHHHhhccC-CChhHHHHHHHHHH
Q 019679          241 YRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ  289 (337)
Q Consensus       241 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~  289 (337)
                      +|..++.+++.++.        +..+|.+..++.+ ++.+||..|+.+|.
T Consensus       233 vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         233 VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            88899999998753        3577888877765 46899999998875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.6e-15  Score=134.06  Aligned_cols=329  Identities=13%  Similarity=0.077  Sum_probs=244.4

Q ss_pred             ChHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhH
Q 019679            4 SWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVK   75 (337)
Q Consensus         4 ~~~vR~~~~~~l~~~~~~~~~~----~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~   75 (337)
                      +...+..++..+..+...-...    .....++|.+.+++. +.++.++..++.+|..++...+..   .....++|.+.
T Consensus        89 ~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~  168 (503)
T d1wa5b_          89 DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFI  168 (503)
T ss_dssp             SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHH
Confidence            4455566666665543211111    112457899999997 457889999999999988643322   22344788999


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL  149 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll  149 (337)
                      .++++++..++..++.++++++.....   ......+++.+..++.+.++.++..++..+..++.....   ......++
T Consensus       169 ~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l  248 (503)
T d1wa5b_         169 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL  248 (503)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGH
T ss_pred             HHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            999999999999999999998753321   112346789999999999999999999999999865332   22346789


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhHhHhhhCh---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChH---HHH
Q 019679          150 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAM  223 (337)
Q Consensus       150 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~  223 (337)
                      |.+..++.+.++.++..++..+..++.....   ......+++.+..++.++++.++..++.+++.++...+..   ...
T Consensus       249 ~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~  328 (503)
T d1wa5b_         249 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN  328 (503)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999988764321   1233457788899999999999999999999987532211   113


Q ss_pred             hhHHHHHHHhhcCcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH--H
Q 019679          224 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--S  298 (337)
Q Consensus       224 ~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~  298 (337)
                      ..+++.+..++.+++..+|..++++++.++.....   ......++|.+...+.+.+..||..++.++..+......  +
T Consensus       329 ~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~  408 (503)
T d1wa5b_         329 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD  408 (503)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTH
T ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHH
Confidence            35789999999999999999999999998753221   122456889999999999999999999999999764321  1


Q ss_pred             ----HHHHhhhHHHHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          299 ----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       299 ----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                          .....+++.|..+++..+.++...+.++|..+..
T Consensus       409 ~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         409 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                1234577888888888899999999998888764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=8.2e-15  Score=129.47  Aligned_cols=305  Identities=14%  Similarity=0.115  Sum_probs=234.6

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--CH-H-HHHHhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccChh-
Q 019679           30 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NP-E-LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKD-  103 (337)
Q Consensus        30 ~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~--~~-~-~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~-  103 (337)
                      +-++.+.+.+.+++.+.+..++..+.++...-  ++ + .+...++|.+.++++ +.++.++..++.++.+++...... 
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45788888889999999999998888876421  11 2 233557888888876 567889999999999998643321 


Q ss_pred             --hHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch--h-hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhh
Q 019679          104 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  178 (337)
Q Consensus       104 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~  178 (337)
                        .....++|.+..++.+++.+++..++.+++.++.....  + .....+++.+..++.+.+..++..++..+..++...
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence              12356899999999999999999999999998764321  1 223457888899999998999999999999988654


Q ss_pred             Ch---hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHh
Q 019679          179 GV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLL  252 (337)
Q Consensus       179 ~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l  252 (337)
                      ..   ......++|.+..++...++.++..++.++..++.....   ......+++.+..++.+++..++..++.+++.+
T Consensus       236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl  315 (503)
T d1wa5b_         236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  315 (503)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHH
Confidence            22   123446889999999999999999999999988753211   122346789999999999999999999999999


Q ss_pred             ccccChH---HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHHHHhhhCCCCccHHHHHHHH
Q 019679          253 APVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQA  326 (337)
Q Consensus       253 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~a  326 (337)
                      +...+..   .....+++.+..++.++++.+|..++.+++.++..-..   ......++|.+..++.+.+.+|+..|+++
T Consensus       316 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~  395 (503)
T d1wa5b_         316 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA  395 (503)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHH
Confidence            8644321   12346889999999999999999999999999753222   12345688888888888899999999999


Q ss_pred             HHHHHHhh
Q 019679          327 LQSKDQVM  334 (337)
Q Consensus       327 l~~l~~~~  334 (337)
                      |..+....
T Consensus       396 l~nl~~~~  403 (503)
T d1wa5b_         396 ISNASSGG  403 (503)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcc
Confidence            99987643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.7e-14  Score=135.35  Aligned_cols=333  Identities=14%  Similarity=0.116  Sum_probs=239.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhhhHhhHHhc
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELS   78 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~---~~~~~ll~~l~~l~   78 (337)
                      |.+|.+|..+..++..++...+... .+.++|.+.+.+.++++..|.+++..++.+.+.....   .....+++.+...+
T Consensus       339 ~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l  417 (876)
T d1qgra_         339 DDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM  417 (876)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            5678899999999999999888765 4778999999999999999999999999888776654   34556788888899


Q ss_pred             CCCcHHHHHHHHHHHHhcCcccChhh----HHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch-------------
Q 019679           79 SDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------------  141 (337)
Q Consensus        79 ~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------------  141 (337)
                      +|+++.||..++.+++.+++..+...    ....+++.+...+.+ ++.++..++..+..+......             
T Consensus       418 ~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  496 (876)
T d1qgra_         418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPAT  496 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCC
T ss_pred             cCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            99999999999999999987665432    235566777776655 689999999998888765321             


Q ss_pred             ---hhHHhhHHHHHHHHhcC---CchHHHHHHHHHhhHhHhhhChhh------HHHHHHHHHHHHcccc----c------
Q 019679          142 ---DLLSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDK----V------  199 (337)
Q Consensus       142 ---~~~~~~llp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~----~------  199 (337)
                         ....+.+++.+...+.+   ....+|..+++.+..+........      ....+++.+...+...    .      
T Consensus       497 ~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  576 (876)
T d1qgra_         497 YCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ  576 (876)
T ss_dssp             CSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHH
Confidence               11234566666666643   345688888888888777654432      2233444444433321    1      


Q ss_pred             -hHHHHHHHHHHHHHHHHhChHHH---HhhHHHHHHHhhcC--cchHHHHHHHHHHHHhccccChH--HHHhhHHHHHHh
Q 019679          200 -YSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVIN  271 (337)
Q Consensus       200 -~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~~~~--~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~  271 (337)
                       ...+......+..+....+.+..   .+.+++.+...+..  ++..++..++.+++.++...+..  .+.+.++|.+..
T Consensus       577 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~  656 (876)
T d1qgra_         577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGI  656 (876)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence             12233444455555555554432   34567777777653  45778999999999998777654  356788999999


Q ss_pred             hccCCC-hhHHHHHHHHHHHHhhhhcHH--HHHHhhhHHHHhhhCCC--CccHHHHHHHHHHHHHHhhhC
Q 019679          272 ASKDRV-PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       272 ~l~d~~-~~vr~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~l~~~~~~  336 (337)
                      .+.+.. +++|..++..++.+....+..  .+...+++.+...+++.  +.++|..++.+++.++..+|.
T Consensus       657 ~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~  726 (876)
T d1qgra_         657 GLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH
Confidence            987665 679999999999998776653  34567777777776654  467999999999999988775

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.9e-13  Score=121.30  Aligned_cols=331  Identities=11%  Similarity=0.040  Sum_probs=234.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCH--HHHHHhhhHhhH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVK   75 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~~~~~~~~--~~~~~~ll~~l~   75 (337)
                      |.+..+|+.++..++.++..-....   ....++|.+..++.+ +++++++.++.+|..++..-..  ..+....+|.+.
T Consensus        28 ~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li  107 (529)
T d1jdha_          28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV  107 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHH
Confidence            5678899999999999985432211   113578888888865 5689999999999988753221  123345689999


Q ss_pred             HhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHH
Q 019679           76 ELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLL  149 (337)
Q Consensus        76 ~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll  149 (337)
                      .+++++++.++..++.+|++++...+.   .......+|.+..++++.+++++..++.++..++..-..   .......+
T Consensus       108 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  187 (529)
T d1jdha_         108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP  187 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccc
Confidence            999999999999999999998764332   222456789999999999999999999999988754221   11223456


Q ss_pred             HHHHHHhc-CCchHHHHHHHHHhhHhHhhhChh--hHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhH
Q 019679          150 PAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  226 (337)
Q Consensus       150 p~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  226 (337)
                      +.+..++. .....++..++..+..++..-...  ......++.+..++.+++..++..++.++..+.............
T Consensus       188 ~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~  267 (529)
T d1jdha_         188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL  267 (529)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHH
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhc
Confidence            66666664 455678888888888776433221  233346788889999999999999999999887544333334568


Q ss_pred             HHHHHHhhcCcchHHHHHHHHHHHHhccccCh--H-HHHhhHHHHHHhhc--cCCChhHHHHHHHHHHHHhhhhcHH---
Q 019679          227 VPQVLEMINNPHYLYRMTILQAISLLAPVMGS--E-ITCSQLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQS---  298 (337)
Q Consensus       227 ~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~i~~~~~~~---  298 (337)
                      ++.+.+++.+.+..++..++.++..++..-..  . ......++.+...+  ..+.+.++..++.+|..++......   
T Consensus       268 i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~  347 (529)
T d1jdha_         268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA  347 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred             chhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhh
Confidence            89999999999999999999999998743221  1 12334566666655  3455789999999999987443221   


Q ss_pred             ---HHHHhhhHHHHhhhCCC-CccHHHHHHHHHHHHHH
Q 019679          299 ---VVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQ  332 (337)
Q Consensus       299 ---~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~l~~  332 (337)
                         ......++.+..++.++ ++.++..++.++..++.
T Consensus       348 ~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~  385 (529)
T d1jdha_         348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             hhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch
Confidence               22334566777766654 45677777778776653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.3e-13  Score=119.00  Aligned_cols=303  Identities=12%  Similarity=0.050  Sum_probs=218.7

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-HH--HhhhHhhHHhcC-CCcHHHHHHHHHHHHhcCcccCh--
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-AI--QHILPCVKELSS-DSSQHVRSALATVIMGMAPILGK--  102 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~-~~--~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~--  102 (337)
                      ...+|.+.+++.|++..+|..|+..+..++..-.... +.  ..++|.+.+++. ..++.++..++.++..++..-..  
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            4569999999999999999999999999976422211 11  235676666665 46788999999999999853221  


Q ss_pred             hhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhch---hhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhC
Q 019679          103 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  179 (337)
Q Consensus       103 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  179 (337)
                      .......+|.+..+++++++.++..|+.+|..++.....   .......+|.+..++++++..++..++.++..++..-.
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence            123346789999999999999999999999998865432   12235678999999999999999999999998875421


Q ss_pred             h---hhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChH--HHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhc
Q 019679          180 V---GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA  253 (337)
Q Consensus       180 ~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~  253 (337)
                      .   .......++.+..++.. +...++..++..+..++..-+..  ......++.+...+.+++..++..++.++..++
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence            1   11222356677777754 45678999988888776422211  223457888999999999999999999999887


Q ss_pred             cccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhh--CCCCccHHHHHHHHHH
Q 019679          254 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS--EDPDVDVRFFATQALQ  328 (337)
Q Consensus       254 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~--~d~~~~vr~~a~~al~  328 (337)
                      ............++.+.+++.+++..++..++.+|+.++..-...   ......++.+..+.  ....++++..++.++.
T Consensus       256 ~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~  335 (529)
T d1jdha_         256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  335 (529)
T ss_dssp             TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhh
Confidence            655444344578899999999999999999999999997532221   12233444444433  2345678888888888


Q ss_pred             HHH
Q 019679          329 SKD  331 (337)
Q Consensus       329 ~l~  331 (337)
                      .+.
T Consensus       336 ~l~  338 (529)
T d1jdha_         336 HLT  338 (529)
T ss_dssp             HHT
T ss_pred             ccc
Confidence            765

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.55  E-value=3.6e-16  Score=121.57  Aligned_cols=21  Identities=5%  Similarity=0.083  Sum_probs=11.0

Q ss_pred             HHhhccCCChhHHHHHHHHHH
Q 019679          269 VINASKDRVPNIKFNVAKVLQ  289 (337)
Q Consensus       269 l~~~l~d~~~~vr~~a~~~l~  289 (337)
                      +..+++|+++.||.++++.++
T Consensus       191 L~~l~~D~d~~VR~aaae~~~  211 (233)
T d1lrva_         191 LLELLHDPDWTVRLAAVEHAS  211 (233)
T ss_dssp             GGGGGGCSSHHHHHHHHHHSC
T ss_pred             HHHHHhCCCHHHHHHHHHhcc
Confidence            334455555555555555544

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.47  E-value=5e-15  Score=115.09  Aligned_cols=165  Identities=19%  Similarity=0.269  Sum_probs=98.5

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhH
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  110 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  110 (337)
                      -+..+..+++|+++.||..++..|+               .+.+..+.+|+++.||..++..+.               .
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~~L~~D~d~~VR~~aa~~l~---------------~  116 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLP---------------REQLSALMFDEDREVRITVADRLP---------------L  116 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGGGTTTCSCHHHHHHHHHHSC---------------T
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcC---------------HHHHHHHhcCCChhHHHHHHhccC---------------H
Confidence            3445566666666666666665432               134555666777777766665431               0


Q ss_pred             HHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHH
Q 019679          111 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  190 (337)
Q Consensus       111 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  190 (337)
                      +.+..++.|+++.||..++..+       +.        +.+..+.+|+++.||..++..++       .        +.
T Consensus       117 ~~L~~Ll~D~d~~VR~~aa~~~-------~~--------~~L~~L~~D~d~~VR~~aA~~~~-------~--------~~  166 (233)
T d1lrva_         117 EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFMRDEDRQVRKLVAKRLP-------E--------ES  166 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTTTCSCHHHHHHHHHHSC-------G--------GG
T ss_pred             HHHHHHhcCCCHHHHHHHHhcc-------ch--------hHHHHHhcCCCHHHHHHHHHhcC-------H--------HH
Confidence            2344556677777776666542       11        11234556777777776665322       1        33


Q ss_pred             HHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679          191 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  270 (337)
Q Consensus       191 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  270 (337)
                      +..+++|+++.||..++..++       .        +.+..+++|++|.||.+++..+                .+.++
T Consensus       167 L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~d~~VR~aaae~~----------------~~~ll  215 (233)
T d1lrva_         167 LGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDPDWTVRLAAVEHA----------------SLEAL  215 (233)
T ss_dssp             GGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCSSHHHHHHHHHHS----------------CHHHH
T ss_pred             HHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCCCHHHHHHHHHhc----------------cHHHH
Confidence            455677888888887775542       2        3445677888888888775321                13345


Q ss_pred             hhccCCChhHHHHHHH
Q 019679          271 NASKDRVPNIKFNVAK  286 (337)
Q Consensus       271 ~~l~d~~~~vr~~a~~  286 (337)
                      ..|.|+++.||.++++
T Consensus       216 ~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         216 RELDEPDPEVRLAIAG  231 (233)
T ss_dssp             HHCCCCCHHHHHHHHC
T ss_pred             HHhCCCCHHHHHHHHH
Confidence            6778888899888764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.35  E-value=4.3e-14  Score=97.81  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=79.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCC
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS   81 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~   81 (337)
                      |+++.||+.++.+|+.+    |+     +.++.+.+.+.|+++.||..++.+|+.+..        ...+|.+.++++|+
T Consensus         3 D~~~~VR~~A~~aL~~~----~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d~   65 (111)
T d1te4a_           3 DENKWVRRDVSTALSRM----GD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDD   65 (111)
T ss_dssp             SSCCCSSSSCCSSTTSC----SS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHHh----CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhccc
Confidence            77888888888887653    22     235667778888888888888888775432        23456677777888


Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHH
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  133 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  133 (337)
                      ++.||..++.+|+.+..        ....|.+..+++|+++.||..|+.+|.
T Consensus        66 ~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          66 SGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88888888888887753        345677788888888888888887764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.8e-10  Score=97.63  Aligned_cols=145  Identities=12%  Similarity=0.059  Sum_probs=94.2

Q ss_pred             HHHHHHHHcc-ccchHHHHHHHHHHHHHHHHhCh-------HH-HHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccC
Q 019679          187 LGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  257 (337)
Q Consensus       187 l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~-------~~-~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~  257 (337)
                      .++.+...+. ..++.++..+...+..+......       .. .....+|.+.+++.++++.+|..++.+++.++....
T Consensus       284 ~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~  363 (457)
T d1xm9a1         284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence            3444444433 23456666666666665432111       00 123578999999999999999999999999976543


Q ss_pred             -hHHHHhhHHHHHHhhccC------CChhHHHHHHHHHHHHhhhhcHH---HHHHhhhHHHHhhhCC-CCccHHHHHHHH
Q 019679          258 -SEITCSQLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSED-PDVDVRFFATQA  326 (337)
Q Consensus       258 -~~~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d-~~~~vr~~a~~a  326 (337)
                       .+......+|.+..++.+      ..++|+..++.+|..+.......   ......++.|..++.+ .++.++..|+.+
T Consensus       364 ~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~  443 (457)
T d1xm9a1         364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL  443 (457)
T ss_dssp             GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHH
Confidence             233344567777777643      34579999999999987544322   1223356677776654 467899999999


Q ss_pred             HHHHH
Q 019679          327 LQSKD  331 (337)
Q Consensus       327 l~~l~  331 (337)
                      |..+.
T Consensus       444 L~~L~  448 (457)
T d1xm9a1         444 LSDMW  448 (457)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            98874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=7.6e-13  Score=91.39  Aligned_cols=109  Identities=21%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhc
Q 019679           39 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK  118 (337)
Q Consensus        39 ~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  118 (337)
                      ++|+|+.||..++..|+.+++         ..++.+.++++|+++.||..++.+++.+..        ...+|.+.++++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~---------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD---------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS---------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH---------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            457777778777777765432         123445566778888888888887776653        235577777777


Q ss_pred             CCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhh
Q 019679          119 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  172 (337)
Q Consensus       119 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~  172 (337)
                      |+++.||..++.+|+.+..        +...|.+.++++|+++.||..++..|.
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888888888888776632        345566667777777777777776654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.1e-09  Score=82.72  Aligned_cols=176  Identities=10%  Similarity=0.082  Sum_probs=134.0

Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHH-HHH-Hh-hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hhHHhhhHHHHH
Q 019679           41 DNEAEVRIAAAGKVTKICRILNPE-LAI-QH-ILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFL  114 (337)
Q Consensus        41 d~~~~vR~~a~~~l~~~~~~~~~~-~~~-~~-ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~  114 (337)
                      ..+.+.|..|+..|..+++..+.. .+. .. +.+.+..+++++++.+|..++..+++++..-+.   .......+|.+.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            446788999999999998754332 111 11 344556688899999999999999999974432   223357889999


Q ss_pred             Hhhc-CCChhHHHHHHHhHHHhHhhhchh---hHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhCh--h-hHHHHH
Q 019679          115 SLLK-DEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKL  187 (337)
Q Consensus       115 ~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l  187 (337)
                      .++. +.++.+|..++.++..++......   ......++.+.+++.+.+..++..++..+..++...+.  . ......
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            9885 678999999999999998764421   22355788899999999999999999999988765322  1 123347


Q ss_pred             HHHHHHHccccchHHHHHHHHHHHHHHHH
Q 019679          188 GALCMQWLKDKVYSIRDAAANNVKRLAEE  216 (337)
Q Consensus       188 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  216 (337)
                      +|.+..+++++++.+|+.++.+|+.++..
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-08  Score=84.69  Aligned_cols=302  Identities=13%  Similarity=0.066  Sum_probs=192.4

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh---hh
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DA  104 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~--~-~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~  104 (337)
                      .+|.+.+++.+++++++..++.+|+.++...+.  . ......+|.+.++++++++.+|..++.+|++++...+.   ..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            589999999999999999999999999854332  2 33445789999999999999999999999999853322   12


Q ss_pred             HHhhhHHHHHHhhc-CCChhHHHHHHHhHHHhHhhhchh-hHHhhHHHHHHHHh----------------cCCchHHHHH
Q 019679          105 TIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELA----------------EDRHWRVRLA  166 (337)
Q Consensus       105 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~llp~l~~~~----------------~d~~~~vr~~  166 (337)
                      .....++.+..++. +.++++|..++..+..+....... .....-++.+....                ...+..++..
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            23445788888775 567899999999999998864433 22333344444443                2235567777


Q ss_pred             HHHHhhHhHhhhChhhHH---HHHHHHHHHHccccchH------HHHHHHHHHH---------------HHHHH------
Q 019679          167 IIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYS------IRDAAANNVK---------------RLAEE------  216 (337)
Q Consensus       167 ~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~------vr~~a~~~l~---------------~~~~~------  216 (337)
                      ++..+..++.........   ..+++.+..+++.....      ....+...+.               .....      
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            777776665443222211   23677788887753221      1111111111               00000      


Q ss_pred             -------hCh-------------------------HHHHhhHHHHHHHhhc-CcchHHHHHHHHHHHHhccccChH----
Q 019679          217 -------FGP-------------------------DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE----  259 (337)
Q Consensus       217 -------~~~-------------------------~~~~~~l~~~l~~~~~-~~~~~vR~~~~~~l~~l~~~~~~~----  259 (337)
                             ++.                         .......++.+..... ..+..++..+..++..++......    
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                   000                         0011234455555443 345667777788888776443311    


Q ss_pred             ----HHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHH-HHHHhhhHHHHhhhCC------CCccHHHHHHHHHH
Q 019679          260 ----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSED------PDVDVRFFATQALQ  328 (337)
Q Consensus       260 ----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d------~~~~vr~~a~~al~  328 (337)
                          ......+|.+..++.++++.+|..++.+++.++..-... .+....+|.+..++.+      .+++|+..++.+|.
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~  402 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR  402 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHH
Confidence                112357899999999999999999999999998654432 3344555666665432      34579999999998


Q ss_pred             HHHH
Q 019679          329 SKDQ  332 (337)
Q Consensus       329 ~l~~  332 (337)
                      .+..
T Consensus       403 ~l~~  406 (457)
T d1xm9a1         403 NLMA  406 (457)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=3.1e-07  Score=86.35  Aligned_cols=328  Identities=8%  Similarity=0.056  Sum_probs=186.3

Q ss_pred             CChHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-----H------HHHHhhh
Q 019679            3 KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-----E------LAIQHIL   71 (337)
Q Consensus         3 ~~~~vR~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~-----~------~~~~~ll   71 (337)
                      ++..+|...+.+++.++..-.|+. |++++|.+.+.++++++..+..++.++..+.+....     .      ...+.+.
T Consensus        97 ~~~~ir~~l~~~i~~I~~~d~p~~-Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~  175 (959)
T d1wa5c_          97 LPNNLQVQIGEAISSIADSDFPDR-WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFT  175 (959)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCccc-cHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHH
Confidence            567899999999999999887754 799999999999999999999999999999875421     1      1112222


Q ss_pred             HhhHHhc--------CCCcH-HHH-------HHHHHHHHhcCcccChhh---HHhhhHHHHHHhhcCCC-----------
Q 019679           72 PCVKELS--------SDSSQ-HVR-------SALATVIMGMAPILGKDA---TIEQLLPIFLSLLKDEF-----------  121 (337)
Q Consensus        72 ~~l~~l~--------~d~~~-~vr-------~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~-----------  121 (337)
                      +.+.+++        +.... ..-       ....+.+..+....-.+.   ....++..+..++....           
T Consensus       176 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  255 (959)
T d1wa5c_         176 APFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEH  255 (959)
T ss_dssp             HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------C
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhh
Confidence            2222221        11111 110       111222211111111111   11334444555443211           


Q ss_pred             ----hhHHHHHHHhHHHhHhhhchh--hHHhhHHHHHHHHh----c-CCchHHHHHHHHHhhHhHhhhC------hhhHH
Q 019679          122 ----PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA----E-DRHWRVRLAIIEYIPLLASQLG------VGFFD  184 (337)
Q Consensus       122 ----~~vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~----~-d~~~~vr~~~~~~l~~l~~~~~------~~~~~  184 (337)
                          ..++...++.+..+.+..+..  .+.+.+++.+...+    . .....+...+++.+..++....      ...+.
T Consensus       256 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l  335 (959)
T d1wa5c_         256 ASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAM  335 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH
Confidence                246667777777766654321  11223333333322    2 2233455555565555544321      11122


Q ss_pred             HHHH-HHHHHHcc-----------------------ccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHHHhhc-----
Q 019679          185 DKLG-ALCMQWLK-----------------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-----  235 (337)
Q Consensus       185 ~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-----  235 (337)
                      ..++ +.+...+.                       +..+..|.++...+..++...+. .....+.+.+.+.+.     
T Consensus       336 ~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~-~~~~~~~~~i~~~~~~~~~~  414 (959)
T d1wa5c_         336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSD  414 (959)
T ss_dssp             HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhhccC
Confidence            2222 23333221                       12235678888888888876643 333444444444432     


Q ss_pred             -CcchHHHHHHHHHHHHhccccCh-----------HHHHhhHHHHHH---hhccCCChhHHHHHHHHHHHHhhhhcHHHH
Q 019679          236 -NPHYLYRMTILQAISLLAPVMGS-----------EITCSQLLPVVI---NASKDRVPNIKFNVAKVLQSLIPIVDQSVV  300 (337)
Q Consensus       236 -~~~~~vR~~~~~~l~~l~~~~~~-----------~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~  300 (337)
                       +.+|..|.+++..++.+....+.           ..+.+.+.+.+.   ....++.+.+|..++..++.+.+...++. 
T Consensus       415 ~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~-  493 (959)
T d1wa5c_         415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQ-  493 (959)
T ss_dssp             ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHH-
T ss_pred             CccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHH-
Confidence             35799999999999988532210           011222222222   22355667899999999999998877654 


Q ss_pred             HHhhhHHHHhhhCCCCccHHHHHHHHHHHHHHh
Q 019679          301 EKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       301 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~l~~~  333 (337)
                      ...+++.+..++.|++..||..|+.|+..+...
T Consensus       494 ~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         494 LIELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (959)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Confidence            467888888999999999999999999988653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=5.3e-09  Score=83.47  Aligned_cols=172  Identities=17%  Similarity=0.146  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHhhHhHhhhChhh--HH-HHHHHHHHHHccccchHHHHHHHHHHHHHHHHhCh---HHHHhhHHHHHHHhh
Q 019679          161 WRVRLAIIEYIPLLASQLGVGF--FD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMI  234 (337)
Q Consensus       161 ~~vr~~~~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~~  234 (337)
                      ...|..+++.+..+++......  .. ..+.+.+..+++++++.+|..|+..++.++.....   .......+|.++.++
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL  110 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  110 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHh
Confidence            3455555555555554322111  00 11233344577888889999999999988864311   122346788888888


Q ss_pred             c-CcchHHHHHHHHHHHHhccccCh---HHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcH---HHHHHhhhHH
Q 019679          235 N-NPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPC  307 (337)
Q Consensus       235 ~-~~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~  307 (337)
                      . +.+..+|..++.++..++.....   .......++.+..++.+++..++..++.++..++...+.   .......+|.
T Consensus       111 ~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~  190 (264)
T d1xqra1         111 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  190 (264)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHH
Confidence            5 56688898899999888755432   223445688888888888899999999999888754332   2333457888


Q ss_pred             HHhhhCCCCccHHHHHHHHHHHHHH
Q 019679          308 LVELSEDPDVDVRFFATQALQSKDQ  332 (337)
Q Consensus       308 l~~l~~d~~~~vr~~a~~al~~l~~  332 (337)
                      |..+++++++++|..|+.+|..++.
T Consensus       191 L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         191 LVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            8888888899999999999988864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.5e-05  Score=74.69  Aligned_cols=325  Identities=12%  Similarity=0.080  Sum_probs=185.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHhCCCC-------cccchHHHHHH-------hcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 019679            2 DKSWRVRYMVANQLYELCEAVGPEP-------TRSDVVPAYVR-------LLRDNEAEVRIAAAGKVTKICRILNPELAI   67 (337)
Q Consensus         2 D~~~~vR~~~~~~l~~~~~~~~~~~-------~~~~l~~~l~~-------~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~   67 (337)
                      +.+|+.|..+...++.++...+...       ....+.+.+.+       ...++.+.+|..++..++.+.+...++.. 
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~-  494 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-  494 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHH-
Confidence            4579999999999998874332111       01123333332       22456688999999999999998777654 


Q ss_pred             HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcccCh----------hh---HHhhhHHHHHHhhcCCChh-----HHHHHH
Q 019679           68 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----------DA---TIEQLLPIFLSLLKDEFPD-----VRLNII  129 (337)
Q Consensus        68 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~---~~~~l~~~l~~~l~d~~~~-----vr~~a~  129 (337)
                      ..+++.+.++++|++..||..|+.++..+......          +.   ..+.++..+...+.+....     +...++
T Consensus       495 ~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll  574 (959)
T d1wa5c_         495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM  574 (959)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            57888888999999999999999999998764432          11   1234444555555443322     234577


Q ss_pred             HhHHHhHhhhchh--hHHhhHHHHHHH----HhcC-CchHHHHHHHHHhhHhHhhhChhh---HHHHHHHHHHHHccccc
Q 019679          130 SKLDQVNQVIGID--LLSQSLLPAIVE----LAED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKV  199 (337)
Q Consensus       130 ~~l~~l~~~~~~~--~~~~~llp~l~~----~~~d-~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~  199 (337)
                      .++..+.+..+..  .+.+.+++.+..    ..++ .+......+.++++.+....+++.   +.+.++|.+...+....
T Consensus       575 ~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~  654 (959)
T d1wa5c_         575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI  654 (959)
T ss_dssp             HHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccc
Confidence            7787777776542  222344444443    3333 345677888888998887776543   44667888888777666


Q ss_pred             hHHHHHHHHHHHHHHHHhCh-HHHHhhHHHHHHH-hhcCcchHHHHHHHHHHHHhccccChHHH--HhhHHHHHHhhccC
Q 019679          200 YSIRDAAANNVKRLAEEFGP-DWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKD  275 (337)
Q Consensus       200 ~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~-~~~~~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d  275 (337)
                      ......+...+..+....+. ......+++.+.. ...+... ........+..+.... .+.+  ...++..+..++.+
T Consensus       655 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~l~~  732 (959)
T d1wa5c_         655 QEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG-NIPAVTRLLKSFIKTD-SSIFPDLVPVLGIFQRLIAS  732 (959)
T ss_dssp             TTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT-THHHHHHHHHHHHHHH-GGGCSCSHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhh-hHHHHHHHHHHHHHhC-HHhhcchHHHHHHHHHHHCC
Confidence            66677777777777665431 0111234444432 2222221 2222333333322111 1111  12355555566655


Q ss_pred             CChhHHHHHHHHHHHHhhhhcHHHH---HHhhhHHHH-hhhCCCCccHHHHHHHHHHHHH
Q 019679          276 RVPNIKFNVAKVLQSLIPIVDQSVV---EKSIRPCLV-ELSEDPDVDVRFFATQALQSKD  331 (337)
Q Consensus       276 ~~~~vr~~a~~~l~~i~~~~~~~~~---~~~i~~~l~-~l~~d~~~~vr~~a~~al~~l~  331 (337)
                      +..  +..++..++.+...++.+..   ...++..+. .+.+...+.+....+..+..++
T Consensus       733 ~~~--~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~  790 (959)
T d1wa5c_         733 KAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS  790 (959)
T ss_dssp             TTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             Ccc--hHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            432  45677778888777765432   222332222 2344445555555555555444

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.45  E-value=2e-05  Score=64.11  Aligned_cols=185  Identities=11%  Similarity=0.018  Sum_probs=110.5

Q ss_pred             cHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcC---
Q 019679           82 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED---  158 (337)
Q Consensus        82 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d---  158 (337)
                      .+..|.....+++..+.        ..-+..+.+.+.+..-..- .+...+..+.....+.   ..++..+.+++++   
T Consensus        70 ~~~~r~~~lDal~~~GT--------~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt---~~~l~~~~~l~~~~~~  137 (336)
T d1lsha1          70 QKDYRRWILDAVPAMAT--------SEALLFLKRTLASEQLTSA-EATQIVASTLSNQQAT---RESLSYARELLNTSFI  137 (336)
T ss_dssp             SHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHH
T ss_pred             ChhHHHHHHHHHHHhCC--------HHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC---HHHHHHHHHHHcCccc
Confidence            35567777777777765        2223444555543322111 1222333333222221   2233444444443   


Q ss_pred             -CchHHHHHHHHHhhHhHhhhCh------hhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhChHHHHhhHHHHHH
Q 019679          159 -RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  231 (337)
Q Consensus       159 -~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  231 (337)
                       .++.+|..+.-.++.++..+..      +.+.+.+...+.+.....+..-+..++++||.++    ..    ..++.+.
T Consensus       138 ~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~p----~~i~~l~  209 (336)
T d1lsha1         138 RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----QP----NSIKKIQ  209 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----CG----GGHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC----CH----hHHHHHH
Confidence             4678999999888888876521      2334556666666666666677777888888654    22    3455666


Q ss_pred             HhhcC-------cchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHH
Q 019679          232 EMINN-------PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  289 (337)
Q Consensus       232 ~~~~~-------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  289 (337)
                      .++.+       .+..+|.+|++++..++... +....+.+++++.+  .+.+++||.+|...|-
T Consensus       210 ~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm  271 (336)
T d1lsha1         210 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF  271 (336)
T ss_dssp             TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             HHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHH
Confidence            66543       35789999999999887643 34456667777776  5666899999887653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.07  E-value=0.00018  Score=58.38  Aligned_cols=185  Identities=9%  Similarity=0.035  Sum_probs=108.0

Q ss_pred             ChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc---
Q 019679          121 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD---  197 (337)
Q Consensus       121 ~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---  197 (337)
                      .+..|.--..++...+..        .-+..+.+.+..+.-..- .+...+..++....+.   ..++..+..++++   
T Consensus        70 ~~~~r~~~lDal~~~GT~--------~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt---~~~l~~~~~l~~~~~~  137 (336)
T d1lsha1          70 QKDYRRWILDAVPAMATS--------EALLFLKRTLASEQLTSA-EATQIVASTLSNQQAT---RESLSYARELLNTSFI  137 (336)
T ss_dssp             SHHHHHHHHHHHHHHCSH--------HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCC---HHHHHHHHHHHTCHHH
T ss_pred             ChhHHHHHHHHHHHhCCH--------HHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCC---HHHHHHHHHHHcCccc
Confidence            355565545555544332        223344444443332222 2233444444333222   3456666666665   


Q ss_pred             -cchHHHHHHHHHHHHHHHHhCh------HHHHhhHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHH
Q 019679          198 -KVYSIRDAAANNVKRLAEEFGP------DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  270 (337)
Q Consensus       198 -~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~  270 (337)
                       .++.++..+.-++|.+...+-.      +.+.+.+...+.+.....+...+..++.+||.++.        +..++.+.
T Consensus       138 ~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~  209 (336)
T d1lsha1         138 RNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQ  209 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHH
Confidence             4688999999999998866411      22344455566666666777788889999998763        34556666


Q ss_pred             hhccC-------CChhHHHHHHHHHHHHhhhhcHHHHHHhhhHHHHhhhCCCCccHHHHHHHHHH
Q 019679          271 NASKD-------RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ  328 (337)
Q Consensus       271 ~~l~d-------~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~  328 (337)
                      .++.+       ....+|.+|+.+|..+.... +....+.+.+.+.+  .+.+.++|..|...+-
T Consensus       210 ~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm  271 (336)
T d1lsha1         210 RFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF  271 (336)
T ss_dssp             TTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             HHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHH
Confidence            66643       24679999999999987653 33333444444443  3345778877776653

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.48  Score=36.74  Aligned_cols=208  Identities=13%  Similarity=0.161  Sum_probs=129.4

Q ss_pred             HhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhh-ch-----hhH--HhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          106 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       106 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~-----~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      ..+++..+...+..=+.+.|+.+...+..+...- +.     +-+  .+.++..+...-++++...-.+.  .+...++.
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~--mLREcik~  144 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRH  144 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTS
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhH--HHHHHHhh
Confidence            4566777777777777888888888887776542 11     111  13466666666665544322221  11111110


Q ss_pred             --hChhhHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHhC---hHHH---HhhHHHHHHHhhcCcchHHHHHHHHHH
Q 019679          178 --LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWA---MQHIVPQVLEMINNPHYLYRMTILQAI  249 (337)
Q Consensus       178 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~---~~~l~~~l~~~~~~~~~~vR~~~~~~l  249 (337)
                        +..-.....-.--++.+..-++-+|-..|..++..+.....   .+.+   .+.++..+..++.++++-.|..++..+
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence              00000111122345567788888999998888887765431   1111   345777888899999999999999999


Q ss_pred             HHhccccC-hHHH-----HhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc--HH------HHHHhhhHHHHhhhCCC
Q 019679          250 SLLAPVMG-SEIT-----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QS------VVEKSIRPCLVELSEDP  315 (337)
Q Consensus       250 ~~l~~~~~-~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~------~~~~~i~~~l~~l~~d~  315 (337)
                      +.+.-.-. ....     ...-+..+..++.|++..++..|.+.+.-+...-.  ++      ...++++..|..+..|.
T Consensus       225 gelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         225 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCC
Confidence            99853221 1111     23467888999999999999999999988874322  11      11357778888877775

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.66  Score=35.94  Aligned_cols=183  Identities=14%  Similarity=0.038  Sum_probs=92.4

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-----HHH---HhhhHhhHHhcCCCcHHHHHHHHHHHHhcCcc--c
Q 019679           31 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-----LAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPI--L  100 (337)
Q Consensus        31 l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~-----~~~---~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~--~  100 (337)
                      ++..+...+..-+.+-|+.+...+..+...-...     .+.   ..++..+....++++..  ..+-..|...+.+  +
T Consensus        70 ~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiA--l~~G~mLREcik~e~l  147 (330)
T d1upka_          70 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIA--LNCGIMLRECIRHEPL  147 (330)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTH--HHHHHHHHHHHTSHHH
T ss_pred             hHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchh--hhhhHHHHHHHhhHHH
Confidence            4555555555556677777777776665432111     010   12333444444443321  1111111111110  0


Q ss_pred             ChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhc---hhhH---HhhHHHHHHHHhcCCchHHHHHHHHHhhHh
Q 019679          101 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLL  174 (337)
Q Consensus       101 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  174 (337)
                      ........-+.-+.+.+.-++.+|-..|..++..+...-.   .+.+   .+.++..+.++++++++-+|..++..++.+
T Consensus       148 ak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgel  227 (330)
T d1upka_         148 AKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL  227 (330)
T ss_dssp             HHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            0011112223445556667777777777777766543211   1111   133555556677777777777777777776


Q ss_pred             HhhhChhh------HHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Q 019679          175 ASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  215 (337)
Q Consensus       175 ~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  215 (337)
                      ...-....      ..+.-+.+++++|+|.+..++-.|...+.-+..
T Consensus       228 Lldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         228 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            54322211      113456677777777777777777766665543

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.54  E-value=0.57  Score=34.30  Aligned_cols=135  Identities=12%  Similarity=0.009  Sum_probs=77.8

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhhhHhhHHhcCC-CcHHHHHHHHHHHHhcCcccChhhHHh
Q 019679           29 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGKDATIE  107 (337)
Q Consensus        29 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~  107 (337)
                      .++...+..+..++..+.|..|+..+...........     ++.+..++.+ ++|.+--..+..++......     .+
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~~-----l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE-----VVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-----HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHHH-----HHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hh
Confidence            4556666677777777888888877776665544432     2333333333 56766665555554322211     13


Q ss_pred             hhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhHHhhHHHHHHHHhcCCchHHHHHHHHHhhHhHhh
Q 019679          108 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  177 (337)
Q Consensus       108 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  177 (337)
                      ...+.+.+...+++.-+|+.++-+.-...+..    -.+.+++.+.....|+..-||.++.-.|..++..
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~----~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKT----NQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGC----CHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            35567777777878777777655542222211    1134556666666777777777777777666544

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.29  E-value=1.4  Score=32.03  Aligned_cols=136  Identities=9%  Similarity=0.012  Sum_probs=81.4

Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhhHhHhhhChhhHHHHHHHHHHHHccc-cchHHHHHHHHHHHHHHHHhChHHHHhh
Q 019679          147 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQH  225 (337)
Q Consensus       147 ~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~  225 (337)
                      .+...+..+.+++.-..|..++..+.......+..     .++.+..++.. ++|.+-...+..++......     .+.
T Consensus        50 ~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~~-----~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~~  119 (213)
T d2b6ca1          50 KLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSLE-----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTE  119 (213)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH-----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGG
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hhh
Confidence            34444555666666677777777666655443332     34445455544 55777766655554333221     123


Q ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHHhhHHHHHHhhccCCChhHHHHHHHHHHHHhhhhc
Q 019679          226 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  296 (337)
Q Consensus       226 l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  296 (337)
                      ..+.+.....+.+..+|.+++.+.  + .. ..+.....++..+...+.|+..-||.+...+|..+++.-+
T Consensus       120 ~~~~l~~w~~s~~~w~rR~aiv~~--l-~~-~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~p  186 (213)
T d2b6ca1         120 LPTIFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNP  186 (213)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHH--H-HH-HHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHCH
Confidence            566777788888744444443222  1 11 1122234567888888899999999999999999987654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.87  E-value=1.2  Score=30.19  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=44.6

Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH----HhhhHHHHhhhC-CCCccHHHHHHHHHHHHHHhhhC
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVELSE-DPDVDVRFFATQALQSKDQVMMS  336 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~l~~-d~~~~vr~~a~~al~~l~~~~~~  336 (337)
                      ..+-.+.+.++++++.++..|+..|..+.+.+|.....    ..++..|..+.. .+...|+..+.+.+...+..|+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            34445556667777777777777777777777654221    234444444433 33556777777777777776654

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=2.6  Score=28.60  Aligned_cols=73  Identities=8%  Similarity=0.005  Sum_probs=49.3

Q ss_pred             hHHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH----HhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHh
Q 019679          264 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVELSED------PDVDVRFFATQALQSKDQV  333 (337)
Q Consensus       264 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~  333 (337)
                      ..+-.+.+-+...++.+...|+..|..+.+.+|..+..    ..++..|.++..+      ....|+..+.+.+...+..
T Consensus        39 ~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~  118 (151)
T d1juqa_          39 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            44455666677777888888888888888887765432    2356666666543      2456888888888887777


Q ss_pred             hhC
Q 019679          334 MMS  336 (337)
Q Consensus       334 ~~~  336 (337)
                      |.+
T Consensus       119 f~~  121 (151)
T d1juqa_         119 LPE  121 (151)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            643

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.89  E-value=2.7  Score=28.30  Aligned_cols=98  Identities=11%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             hcCCCcHHHHHHHHHHHHhcCcccChhhHHhhhHHHHHHhhcCCChhHHHHHHHhHHHhHhhhchhhH----HhhHHHHH
Q 019679           77 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAI  152 (337)
Q Consensus        77 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~llp~l  152 (337)
                      ....++|..=...|..+..  .-.|    ....+..+.+.+++.++.+...|+..+..+++..|....    ...++..+
T Consensus        17 ~~~~~dw~~il~icD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l   90 (145)
T d1dvpa1          17 LRLEPDWPSILLICDEINQ--KDVT----PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF   90 (145)
T ss_dssp             TCSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence            4567888877777777753  1112    345667778888899999999999999999988875422    22344444


Q ss_pred             HHHhc-CCchHHHHHHHHHhhHhHhhhCh
Q 019679          153 VELAE-DRHWRVRLAIIEYIPLLASQLGV  180 (337)
Q Consensus       153 ~~~~~-d~~~~vr~~~~~~l~~l~~~~~~  180 (337)
                      ..+.. ..+..||.-+++.+...+..++.
T Consensus        91 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          91 SSFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            44443 33456777777777777766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=2.9  Score=28.18  Aligned_cols=70  Identities=11%  Similarity=0.025  Sum_probs=34.5

Q ss_pred             hhHhhHHhcCCCcHHHHHHHHHHHHhcCcccChhhH----HhhhHHHHHHhhcC------CChhHHHHHHHhHHHhHhhh
Q 019679           70 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT----IEQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVI  139 (337)
Q Consensus        70 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~~  139 (337)
                      .+..+.+-+++.++.+...++..+..+...+|....    ...++..+.+++.+      ....|+..++..+......+
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            344444445555666666666666555555553321    13444444444432      23455555555555544443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=3.1  Score=27.90  Aligned_cols=71  Identities=8%  Similarity=-0.067  Sum_probs=41.1

Q ss_pred             HHHHHHhhccCCChhHHHHHHHHHHHHhhhhcHHHHH----HhhhHHHHhhhCC------CCccHHHHHHHHHHHHHHhh
Q 019679          265 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVELSED------PDVDVRFFATQALQSKDQVM  334 (337)
Q Consensus       265 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~l~~d------~~~~vr~~a~~al~~l~~~~  334 (337)
                      .+-.+.+-+.+.++.+...|+..|..+.+.+|..+..    ..++..|..+..+      .+..|+..+.+.+...+..|
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            3344555556666666666666666666666654322    2455555555443      24556666666666666665


Q ss_pred             h
Q 019679          335 M  335 (337)
Q Consensus       335 ~  335 (337)
                      .
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.78  E-value=4  Score=27.32  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             hHHHHHHHhhcCcchHHHHHHHHHHHHhccccChHHHH----hhHHHHHHhhccC------CChhHHHHHHHHHHHHhhh
Q 019679          225 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC----SQLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  294 (337)
Q Consensus       225 ~l~~~l~~~~~~~~~~vR~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d------~~~~vr~~a~~~l~~i~~~  294 (337)
                      ..+..|..-+++++.++...++..+..+...+|..+..    ..++..+.+++.+      ..+.||..++..+..++..
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            46667777788899999999999999999999977532    3577778877764      4578999999999999888


Q ss_pred             hcH
Q 019679          295 VDQ  297 (337)
Q Consensus       295 ~~~  297 (337)
                      ++.
T Consensus       118 f~~  120 (143)
T d1mhqa_         118 FPE  120 (143)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            864

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.50  E-value=0.67  Score=38.20  Aligned_cols=57  Identities=9%  Similarity=0.082  Sum_probs=43.4

Q ss_pred             CcHHHHHHHHHHHHhcCcccChhhHH---hhhHHHHHHhhcCCChhHHHHHHHhHHHhHh
Q 019679           81 SSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  137 (337)
Q Consensus        81 ~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  137 (337)
                      .++.+-..||.=+|.+++..|.....   -.....+++++.+++++||..|+.++..+..
T Consensus       414 ~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         414 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            35677778888899988877643221   2456778889999999999999999887764

>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein BC3264
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=80.17  E-value=2.3  Score=31.44  Aligned_cols=66  Identities=15%  Similarity=0.088  Sum_probs=30.6

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----HHHHHHhhhHhhHHhcCCCcHHHHHHHHHHHHhcC
Q 019679           32 VPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSDSSQHVRSALATVIMGMA   97 (337)
Q Consensus        32 ~~~l~~~~~d~~~~vR~~a~~~l~~~~~~~~----~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~   97 (337)
                      ...+.+++.|++.-+|+++...+..+.....    ++.....+++.+...+.|+.+.||++...+|..++
T Consensus       110 ~~~~~~W~~S~~~w~rRag~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~i~d~~~~v~kAv~W~Lr~ig  179 (235)
T d1t06a_         110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVA  179 (235)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence            3444555555555555555444444433211    11222344444455555555555555555555444