Citrus Sinensis ID: 019690


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
MSGSREESPDWLRSFQAPTHSVLTLSSDSDSDSSHNGNGDGGKNIAELTFEKHMEPFAPKSSILASSSDSESCQNSSLLREEKAFQFQEKEMDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSQGPCRKERYECWRTATATKESKKENYSFKES
cccccccccHHHccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccHHccccEEEEEEcccccccccccccEEEEEEcccccccccEEEEEcEEEEEEEEEccccEEEEEEcccHHHHHHHHHccEEEcccccHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHHHcccccccccccccEEEcccccccEEEEEEccccEEcccccccEEEEEEcccccccccEEEEccEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHEEEcccccccHccHcccccccccEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccc
msgsreespdwlrsfqapthsvltlssdsdsdsshngngdggknIAELTFEkhmepfapkssilasssdsescqnssLLREEKAFQFQEKEMDEDAALTGREEKTSVKKvskekspkkglkspkkekDVINNVkrkgnndhedAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVEcegesvdlsgdmgavgrilvpgtaegnHEMFLDLKGtiykttlvpsrtfcivsfghsEAKIEAIMNDFIqlkpqsnvyeAETMVEGTldgflfdsedESDKLAKamphqidqndgieeqtnektkvksqgpcrkeryECWRTAtatkeskkenysfkes
msgsreespdwlRSFQAPTHSVLTlssdsdsdsshngngdGGKNIAELTFEKHMEPFAPKSSILASSSDSESCQNSSLLREEKAFQFQEKEMdedaaltgreektsvkkvskekspkkglkspkkekdvinnvkrkgnndhedaeediaekrsmlnvSTSTLPLVMSEKLQRTKALVECEGesvdlsgdmgaVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQidqndgieeqtnektkvksqgpcrkeryecwrtatatkeskkenysfkes
MSGSREESPDWLRSFQAPTHSVLTLssdsdsdsshngngdggKNIAELTFEKHMEPFAPKssilasssdsescqnssLLREEKAFQFQEKEMDEDAALTGReektsvkkvskekspkkglkspkkekDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSQGPCRKERYECWRTATATKESKKENYSFKES
*****************************************************************************************************************************************************************************KALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLF*********************************************CW*******************
******E****LRSFQA***************************************************************************************************************************************************VMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG*****HEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSE***************************************************************
***********LRSFQAPTHSV*****************DGGKNIAELTFEKHMEPFAPKSS****************LREEKAFQFQEK************************************KDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQ**************KERYECWRTATAT*************
********PDWLRSFQAPTHSVLTLS*************************************************************************************************************************************STLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFD*****************************************************************
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MSGSREESPDWLRSFQAPTHSVLTLSSDSDSDSSHNGNGDGGKNIAELTFEKHMEPFAPKSSILASSSDSESCQNSSLLREEKAFQFQEKEMDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQTNEKTKVKSQGPCRKERYECWRTATATKESKKENYSFKES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query337 2.2.26 [Sep-21-2011]
Q9FLU1454 DNA-binding protein BIN4 yes no 0.412 0.306 0.690 6e-53
>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2 Back     alignment and function desciption
 Score =  208 bits (529), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 158 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 217
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 218 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 277
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 278 DKLAKAMPHQIDQNDGIEEQTN 299
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409




Component of the DNA topoisomerase VI complex. Binds to DNA. Required for chromatin organization and progression of endoreduplication cycles. The loss of BIN4 activates the ATM- and ATR-dependent DNA damage responses in postmitotic cells and induces the ectopic expression of the mitotic G2/M-specific cyclin B1;1 gene in non-dividing cells.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
359490779397 PREDICTED: uncharacterized protein LOC10 0.890 0.755 0.514 6e-84
449459184391 PREDICTED: uncharacterized protein LOC10 0.973 0.838 0.426 3e-64
224121130187 predicted protein [Populus trichocarpa] 0.459 0.828 0.748 7e-63
218190056342 hypothetical protein OsI_05847 [Oryza sa 0.908 0.894 0.425 2e-60
115444213342 Os02g0147700 [Oryza sativa Japonica Grou 0.908 0.894 0.422 1e-59
218189675 473 hypothetical protein OsI_05068 [Oryza sa 0.905 0.644 0.429 2e-57
195625200364 hypothetical protein [Zea mays] gi|41393 0.887 0.821 0.422 1e-56
147811095 693 hypothetical protein VITISV_037245 [Viti 0.795 0.386 0.416 2e-56
356507532380 PREDICTED: uncharacterized protein LOC10 0.545 0.484 0.592 4e-56
357464307416 DNA-binding protein BIN4 [Medicago trunc 0.540 0.437 0.606 4e-56
>gi|359490779|ref|XP_002269798.2| PREDICTED: uncharacterized protein LOC100252112 [Vitis vinifera] gi|302144012|emb|CBI23117.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 190/369 (51%), Positives = 233/369 (63%), Gaps = 69/369 (18%)

Query: 1   MSGSREESPDWLRSFQAPTHSVLTLSSDSDS-------------DSSHN----------- 36
           M  SREESPDWL  FQAPT S LTLSSDSDS             DS  N           
Sbjct: 1   MGSSREESPDWLHCFQAPTRSALTLSSDSDSPPEDSPLREDKDADSPFNETSKAKSPRKR 60

Query: 37  -------------------GNGDGGKNIAELTFEKHMEPFAPKSSILASSSDSESCQNSS 77
                                G+ G+  A +      EP AP  S+   SSDSESC ++S
Sbjct: 61  LKAEDPKSTKKQKVNNHKKKEGNEGRKKASVEKPSDGEPNAPNHSVWKLSSDSESCPDNS 120

Query: 78  LLREE----------KAFQFQEKEMDEDAALTGREEKTSVKKVSKEKSPKKGLKSPKKEK 127
            +RE+          K  QF +KE  +DA L+   +++ + + SKEKSPKK +K     +
Sbjct: 121 SMREDYIHHEESSVHKTTQFPDKE--KDAVLSENGQESLLNEASKEKSPKKRVKV----E 174

Query: 128 DVINNVKRKGNND-----HEDA----EEDIAEKRSMLNVSTSTLPLVMSEKLQRTKALVE 178
           D I++ K+K N+D     H+D     EE+ ++K +   VS S LPLV+SEK+ R+KALVE
Sbjct: 175 DHISSKKKKANSDMKGKGHDDGTELLEEEASDKHTEPQVS-SGLPLVLSEKVHRSKALVE 233

Query: 179 CEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAK 238
           CEGES+DLSGDMGAVGRI++  T   NHEMFLDLKGTIYKTT+VPSRTFCIVSFG SEAK
Sbjct: 234 CEGESIDLSGDMGAVGRIVILDTPSRNHEMFLDLKGTIYKTTIVPSRTFCIVSFGQSEAK 293

Query: 239 IEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDESDKLAKAMPHQIDQNDGIEEQT 298
           +EA+MNDFIQLKPQSNVYEAETMVEG L+GF FDS+DE+DK+ KA   Q DQN+G EEQT
Sbjct: 294 VEAVMNDFIQLKPQSNVYEAETMVEGILEGFSFDSDDEADKMPKASTRQTDQNEGDEEQT 353

Query: 299 NEKTKVKSQ 307
           N KTK K++
Sbjct: 354 NGKTKGKAE 362




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459184|ref|XP_004147326.1| PREDICTED: uncharacterized protein LOC101208657 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224121130|ref|XP_002318505.1| predicted protein [Populus trichocarpa] gi|222859178|gb|EEE96725.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|218190056|gb|EEC72483.1| hypothetical protein OsI_05847 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|115444213|ref|NP_001045886.1| Os02g0147700 [Oryza sativa Japonica Group] gi|113535417|dbj|BAF07800.1| Os02g0147700 [Oryza sativa Japonica Group] gi|215765268|dbj|BAG86965.1| unnamed protein product [Oryza sativa Japonica Group] gi|222622166|gb|EEE56298.1| hypothetical protein OsJ_05371 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218189675|gb|EEC72102.1| hypothetical protein OsI_05068 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|195625200|gb|ACG34430.1| hypothetical protein [Zea mays] gi|413935593|gb|AFW70144.1| hypothetical protein ZEAMMB73_185491 [Zea mays] Back     alignment and taxonomy information
>gi|147811095|emb|CAN76881.1| hypothetical protein VITISV_037245 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507532|ref|XP_003522518.1| PREDICTED: uncharacterized protein LOC100795660 [Glycine max] Back     alignment and taxonomy information
>gi|357464307|ref|XP_003602435.1| DNA-binding protein BIN4 [Medicago truncatula] gi|355491483|gb|AES72686.1| DNA-binding protein BIN4 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query337
TAIR|locus:2153939454 BIN4 "AT5G24630" [Arabidopsis 0.436 0.323 0.68 3.8e-56
TAIR|locus:2153939 BIN4 "AT5G24630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 515 (186.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
 Identities = 102/150 (68%), Positives = 125/150 (83%)

Query:   158 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 217
             S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T  G  +M+LDLKGTIY
Sbjct:   271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDTT-G--DMYLDLKGTIY 327

Query:   218 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 277
             K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct:   328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query:   278 DKLAKAMPHQIDQNDGIEEQTNEKTKVKSQ 307
             +K AK      DQ+ G EE+TN K K K++
Sbjct:   388 NKNAKTAVKPADQSVGTEEETNTKAKPKAK 417


GO:0009913 "epidermal cell differentiation" evidence=IMP
GO:0003690 "double-stranded DNA binding" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IPI
GO:0010090 "trichome morphogenesis" evidence=RCA;IMP
GO:0030307 "positive regulation of cell growth" evidence=IMP
GO:0042023 "DNA endoreduplication" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0051276 "chromosome organization" evidence=RCA;IMP
GO:0000003 "reproduction" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006259 "DNA metabolic process" evidence=RCA
GO:0006325 "chromatin organization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0007131 "reciprocal meiotic recombination" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009410 "response to xenobiotic stimulus" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0048522 "positive regulation of cellular process" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query337
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 42/322 (13%), Positives = 98/322 (30%), Gaps = 97/322 (30%)

Query: 11  WL--RSFQAPTHSVL----TLSSDSDSDSSHNGNGDGGKNIAELTFEKHMEPFAPKSSIL 64
           WL  ++  +P  +VL     L    D +       D   NI     +  +     +   L
Sbjct: 186 WLNLKNCNSP-ETVLEMLQKLLYQIDPN--WTSRSDHSSNI-----KLRIHSIQAELRRL 237

Query: 65  ASSSDSESC-------QNSSLLREEKAFQFQEKEM--DEDAALTGREEKTSVKKVSKEKS 115
             S   E+C       QN+       AF    K +       +T      +   +S +  
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH- 293

Query: 116 PKKGLKSPKKEKDVINNVKRKGNNDHEDAEEDIAEKRSMLNVSTSTL--------PLVMS 167
               L                     ++ +  + +    L+     L        P  +S
Sbjct: 294 HSMTL-------------------TPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLS 331

Query: 168 ---EKLQRTKAL------VECE--GESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTI 216
              E ++   A       V C+     ++ S +      +L P       +MF  L  ++
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLN------VLEPAEYR---KMFDRL--SV 380

Query: 217 Y-KTTLVPSRTFCIVSFGHSEAKIEAIMNDF-----IQLKPQSNVYEAETMVEGTLDGFL 270
           +  +  +P+    ++ F   ++ +  ++N       ++ +P+ +          ++    
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--------SIPSIY 432

Query: 271 FDSEDESDKLAKAMPHQ--IDQ 290
            + + + +       H+  +D 
Sbjct: 433 LELKVKLENEYAL--HRSIVDH 452


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00