Citrus Sinensis ID: 019701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS
Secondary Structure (PSIPRED)
ccccccHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHcccccccHHHHHHccccccEEEEEcccccEEccEEEccccccccccccccccccccccccccEEEEEEEEEcccccccccHHHHHHcccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEHEccHHHccccHHHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccEEEEEEEccccHHHHHHHHHccccHcHHHHHHcccccccEEEEEcccccEEEEEEEccccccccccHHccccccccccccccEEEEEEEEccccccHHHHHHHHHHcccccEEEEccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MENNQQSFWQFSDQLRVQASNLanlslndsiwsnnygskrpderknfdirvggqvnvnpftkgsdlnafddgyksmssnyndiglgpigqimapasasqknvginggfnkgiyskpghfglstintnnnnninSYMNVNLkgnrnreendhhglgsksgkknsnkknnnkdgdnnsdnkdtkTAADkrfktlppsealprnetigGYIFVCNNDTMAENLKRqlfglppryrdsvraitpglplFLYNYSTHQLHGIFeaasfggtnidptawedkkcpgesrfpaQVRVVTRKIcepleedsfrpilhhydgpkfrlelnvpeaISLLDIFEEQDS
Flexible Loop (DISEMBL)
MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGqvnvnpftkgsdLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNREENDhhglgsksgkknsnkknnnkdgdnnsdnkdtktaadkrfktlppsealprnetIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWedkkcpgesrfpaqvRVVTRKICepleedsfrpiLHHYDGPKFRLELNVPEAISLLDIFEEQDS
Low Complexity Region (SEG)
MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLStintnnnnninSYMNVNLKGNRNREENDHHGLgsksgkknsnkknnnkdgdnnsdnkdTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS
Disordered region (IsUnstruct)
********WQFSDQLRVQASNLANLSLNDSIWSN************FDIRVGGQVNVNPFTKGSDLNAFDDGY*****NYNDIGLGPIGQIMA*******NVGINGGFNKGIYSK**************************************************************************************ETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIF*****
Disordered Region (DISOPRED)
*****QS*WQFSDQLRVQAS***************************************************************************************************************************************************************************************IGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAW**********FPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE***
Disordered Region (DISEMBL)
MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNRE******************KNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS
Disordered Region (DISPRO)
*****QSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRP**RKNFDIRVGGQVNV*****GSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNNINSY*******************************************************T*PPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
P37707	207	B2 protein OS=Daucus caro	N/A	no	0.459	0.748	0.903	4e-82

>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1

 Score =  305 bits (780), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 140/155 (90%), Positives = 148/155 (95%)

Query: 180 DTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAIT 239
           + K   +KRFKTLPP+E+LPRNET+GGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAIT
Sbjct: 50  ENKNGVEKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAIT 109

Query: 240 PGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPL 299
           PGLPLFLYNYSTHQLHG+FEAASFGGTNIDPTAWEDKK  GESRFPAQVRV+TRKICEPL
Sbjct: 110 PGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPL 169

Query: 300 EEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEE 334
           EEDSFRPILHHYDGPKFRLELN+PEAISLLDIFEE
Sbjct: 170 EEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,891,255
Number of Sequences: 539616
Number of extensions: 6700580
Number of successful extensions: 108792
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 345
Number of HSP's that attempted gapping in prelim test: 22682
Number of HSP's gapped (non-prelim): 25078
length of query: 337
length of database: 191,569,459
effective HSP length: 118
effective length of query: 219
effective length of database: 127,894,771
effective search space: 28008954849
effective search space used: 28008954849
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Daucus carota (taxid: 4039)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
224075130	364	predicted protein [Populus trichocarpa]	0.931	0.862	0.6	1e-114
363806694	328	uncharacterized protein LOC100796450 [Gl	0.928	0.954	0.660	1e-113
449462519	371	PREDICTED: uncharacterized protein LOC10	0.952	0.865	0.612	1e-113
358249330	330	uncharacterized protein LOC100808989 [Gl	0.922	0.942	0.679	1e-108
388497918	340	unknown [Lotus japonicus]	0.940	0.932	0.642	1e-107
388520073	331	unknown [Medicago truncatula]	0.919	0.936	0.642	1e-102
351726918	368	N-rich protein [Glycine max] gi|57898928	0.991	0.907	0.606	1e-102
356547527	363	PREDICTED: uncharacterized protein LOC10	0.934	0.867	0.594	1e-100
255645695	368	unknown [Glycine max]	0.991	0.907	0.598	1e-100
297805420	340	hypothetical protein ARALYDRAFT_493778 [	0.928	0.920	0.585	2e-96

>gi|224075130|ref|XP_002304564.1| predicted protein [Populus trichocarpa] gi|222841996|gb|EEE79543.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/385 (60%), Positives = 271/385 (70%), Gaps = 71/385 (18%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVN---- 56
           MENN+QSF+QFSDQLRVQ  NL NLSLNDSIWSN++GSKRPD+R+NFDIRVG +VN    
Sbjct: 1   MENNRQSFYQFSDQLRVQTPNLGNLSLNDSIWSNSFGSKRPDQRRNFDIRVGAEVNNLKQ 60

Query: 57  ----VNPFT-----------------------------------------KGSDLNAFDD 71
               +N F                                          KGSDLN F+D
Sbjct: 61  KGSDLNSFNDGWNPIRSNLNLFNEGWNSVNDLKPKGSNLNVFNDVYNLKPKGSDLNVFND 120

Query: 72  GYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPGHFGLSTINTNNNNN 131
           G+K M S+ N+ G+ PIG +      S KN+G+NGGF+ GIYSK            NNN 
Sbjct: 121 GWK-MGSSANNYGVSPIGPMGQVVGGSHKNLGVNGGFSNGIYSK------------NNNI 167

Query: 132 INSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKT 191
            N+ +N+++KG++N+ ++D      K      +           +DN D K+AADKRFKT
Sbjct: 168 HNNNLNISVKGSKNKGDDDFGSKSGKKNSNKKSNS---------NDNNDNKSAADKRFKT 218

Query: 192 LPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYST 251
           LPPSE+LPR ETIGGYIFVCNNDTMAENLKR+LFGLPPRYRDSVR ITPGLPLFLYNYST
Sbjct: 219 LPPSESLPRYETIGGYIFVCNNDTMAENLKRELFGLPPRYRDSVRQITPGLPLFLYNYST 278

Query: 252 HQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHY 311
           HQLHG+FEAASFGGTNIDP+AWEDKKC GESRFPAQVRV+TRK+CEPLEEDSFRP+LHHY
Sbjct: 279 HQLHGVFEAASFGGTNIDPSAWEDKKCLGESRFPAQVRVMTRKVCEPLEEDSFRPVLHHY 338

Query: 312 DGPKFRLELNVPEAISLLDIFEEQD 336
           DGPKFRLELN+PEA+SLLDIFEEQ+
Sbjct: 339 DGPKFRLELNIPEALSLLDIFEEQN 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806694|ref|NP_001242010.1| uncharacterized protein LOC100796450 [Glycine max] gi|255634801|gb|ACU17761.1| unknown [Glycine max]

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/342 (66%), Positives = 258/342 (75%), Gaps = 29/342 (8%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPF 60
           MENN QSFWQFSDQLR+QASNLANLSLNDSIWSN+Y SKR DER NFDI+VGG++N    
Sbjct: 1   MENNNQSFWQFSDQLRLQASNLANLSLNDSIWSNSYISKRRDERINFDIKVGGEIN---- 56

Query: 61  TKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPAS----ASQKNVGINGGFNKGIYSKP 116
                  +F    K  + +YN+   G +  +  P +         VG+NGGFNKGIYSKP
Sbjct: 57  -------SFKS--KEPACDYNENMNGSL--LAVPYNNNNILGVGGVGLNGGFNKGIYSKP 105

Query: 117 GHFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNS 176
           G   L+     N N          KG++ ++E++       S +K +     +    NN 
Sbjct: 106 GFANLNNNINLNINP---------KGHKFKDEDELFHPSKPSQEKTTTSTKKHGGNTNND 156

Query: 177 DN-KDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSV 235
           DN KD+K A DKRFKTLPP+E+LPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSV
Sbjct: 157 DNSKDSKAAGDKRFKTLPPAESLPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSV 216

Query: 236 RAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKI 295
           RAITPGLPLFLYNYSTHQLHGIFEAASFGG+N+DP+AWEDKKCPGESRFPAQVRV+TRK 
Sbjct: 217 RAITPGLPLFLYNYSTHQLHGIFEAASFGGSNVDPSAWEDKKCPGESRFPAQVRVITRKT 276

Query: 296 CEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS 337
           CEPLEEDSFRPILHHYDGPKFRLELNVPEA+SLLDIF EQD+
Sbjct: 277 CEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLDIFAEQDT 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462519|ref|XP_004148988.1| PREDICTED: uncharacterized protein LOC101208173 [Cucumis sativus] gi|449506207|ref|XP_004162682.1| PREDICTED: uncharacterized LOC101208173 [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 267/387 (68%), Gaps = 66/387 (17%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVN---- 56
           MENN QSF QFSDQLRVQ  NLANLSLNDSIWSN+Y SKRP+ER+NFD+R GG+VN    
Sbjct: 1   MENNPQSFRQFSDQLRVQTGNLANLSLNDSIWSNSYVSKRPEERRNFDVRNGGEVNSLNN 60

Query: 57  ---------VNPFTKG---------SD----------------------LNAFDDGYKSM 76
                    VN F  G         SD                      LN FD+G+ S 
Sbjct: 61  FKPKVSDSDVNRFNDGWNSFKPSVASDLNNWSNTSNSMNLSSTGYEKNALNVFDNGWNSF 120

Query: 77  SSNYNDIGLGPIGQIMAPASASQKNV------GINGGFNKGIYSKPGHFGLSTINTNNNN 130
            S  +D      G  +  A+     V      GINGGFNKG+YSK G+F           
Sbjct: 121 KSKGSDFNAFNDGWKLNSANMGVDPVIGGAQKGINGGFNKGVYSKIGNF----------- 169

Query: 131 NINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFK 190
           N NS++N+    N  + E +    G K+GKKNSNK N+ ++ ++N +    K A DKRFK
Sbjct: 170 NSNSFVNLKNYKNSGKVEEEK---GGKTGKKNSNKNNSGENNNDNKE--ANKNALDKRFK 224

Query: 191 TLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYS 250
           TLPPSE+LPRNETIGGYIFVCNNDTM ENLKRQLFGLPPRYRDSVRAITPGLP+FLYNYS
Sbjct: 225 TLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYS 284

Query: 251 THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHH 310
           THQLHGIFEAASFGGTNIDPTAWEDKK PGESRFPAQVR+VTRKIC+PLEEDSFRPILHH
Sbjct: 285 THQLHGIFEAASFGGTNIDPTAWEDKKTPGESRFPAQVRIVTRKICDPLEEDSFRPILHH 344

Query: 311 YDGPKFRLELNVPEAISLLDIFEEQDS 337
           YDGPKFRLELN+PEA+SLLDIF EQ S
Sbjct: 345 YDGPKFRLELNIPEALSLLDIFGEQSS 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249330|ref|NP_001239779.1| uncharacterized protein LOC100808989 [Glycine max] gi|255637142|gb|ACU18902.1| unknown [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/346 (67%), Positives = 260/346 (75%), Gaps = 35/346 (10%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPF 60
           MENN QSFWQFSDQLR+QASNLANLSLNDSIWSNNY SKR DER NFDI+VGG++N    
Sbjct: 1   MENNNQSFWQFSDQLRLQASNLANLSLNDSIWSNNYISKRRDERINFDIKVGGEIN---- 56

Query: 61  TKGSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGI---------NGGFNKG 111
                  +F    K  + +YND      G ++A    +  N  I         NGGFNKG
Sbjct: 57  -------SFKS--KDPACDYND---NVNGSLLAMPYNNNNNNNIILGFGGVGLNGGFNKG 104

Query: 112 IYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKD 171
           IYSKP    L+     N N          KG++ + E D     SKS KKN+N    + D
Sbjct: 105 IYSKPAFANLNNNINLNINP---------KGHKGKVE-DELFHPSKSSKKNNNLNKKHGD 154

Query: 172 GDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRY 231
            +NN +NKD+K A DKRFKTLPPSE+LPR+ETIGGYIFVCNNDTMAENLKRQLFGLPPRY
Sbjct: 155 NNNNDNNKDSKAAGDKRFKTLPPSESLPRDETIGGYIFVCNNDTMAENLKRQLFGLPPRY 214

Query: 232 RDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVV 291
           RDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDP+AWEDKKCPGESRFPAQVRV+
Sbjct: 215 RDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPSAWEDKKCPGESRFPAQVRVI 274

Query: 292 TRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS 337
           TRK CEPLEEDSFRPILHHYDGPKFRLELNVPEA+SLLDIF EQD+
Sbjct: 275 TRKTCEPLEEDSFRPILHHYDGPKFRLELNVPEALSLLDIFAEQDT 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497918|gb|AFK37025.1| unknown [Lotus japonicus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 252/341 (73%), Gaps = 24/341 (7%)

Query: 4   NQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTKG 63
           N+QSFWQFSDQLRVQAS LANLSLNDSIWSNNY SKRPD+R+NFD   G    V+     
Sbjct: 7   NEQSFWQFSDQLRVQASGLANLSLNDSIWSNNYTSKRPDQRRNFDAS-GVNGVVDHHHHH 65

Query: 64  SDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGF--NKGIYSKPGHFGL 121
            + N+F +     +S++ND G   +      ++ S  ++  N     NKGIYS       
Sbjct: 66  VNNNSFTNFISKPNSDFNDGGWKMMNTSSNSSNGSLFSMPHNNNIITNKGIYS------- 118

Query: 122 STINTNNNNNINSYMNVNLKGNR---NREENDHHGLGSKSGKKNSNKKNNN--KDGDNNS 176
                  N NIN  MN NLKG +   N +  D      KS +KN+N  NN+  K GDNN+
Sbjct: 119 -------NTNINLDMNNNLKGYKSGFNFKGGDEF-YPPKSARKNTNNHNNSSYKHGDNNN 170

Query: 177 DNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVR 236
            +  TKT A+KRFKTLP SE+LPRNET+GGYIFVCNNDTMAENL+RQ FGLPPRYRDSVR
Sbjct: 171 SDV-TKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQFFGLPPRYRDSVR 229

Query: 237 AITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC 296
           +ITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKC GESRFPAQV+V+TRKIC
Sbjct: 230 SITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVITRKIC 289

Query: 297 EPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS 337
           EPLEEDSFRPILHHYDGPKFRLE +V EA+SLLDIF +Q+S
Sbjct: 290 EPLEEDSFRPILHHYDGPKFRLEPSVAEALSLLDIFADQNS 330

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520073|gb|AFK48098.1| unknown [Medicago truncatula]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/341 (64%), Positives = 248/341 (72%), Gaps = 31/341 (9%)

Query: 3   NNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPFTK 62
           NN+ SFWQFSDQLR Q SNLA+LSLNDSIWS N  +KRPD+R+NFD++    +N N FT 
Sbjct: 6   NNENSFWQFSDQLRHQTSNLASLSLNDSIWSTNM-TKRPDQRRNFDVK-NSDIN-NSFTN 62

Query: 63  -----GSDLNAFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNKGIYSKPG 117
                 SDLN   DG+K M+++      GP+       S    N     GFNKGIYS P 
Sbjct: 63  FNSKPSSDLN---DGWKMMNNSN-----GPL------FSMPHNNNSSFAGFNKGIYSSP- 107

Query: 118 HFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSD 177
                 +N  NNN  N             +  D   LG+K  KKN N  NN      + D
Sbjct: 108 -----YVNNLNNNTNNLSNINLNGYKSGFKVGDEFQLGNKGVKKNINNNNNINK--KHGD 160

Query: 178 NKDT-KTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVR 236
           N D  KT+ADK+FKTLPPSE+LPRNETIGGYIFVCNNDTMAENLKRQ+FGLPPRYRDSVR
Sbjct: 161 NTDVAKTSADKKFKTLPPSESLPRNETIGGYIFVCNNDTMAENLKRQIFGLPPRYRDSVR 220

Query: 237 AITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC 296
            ITPGLPLFLYNYSTHQLHGIFEAASFGG+NIDPTAWEDKKCPGESRFPAQV+V+TRK+C
Sbjct: 221 TITPGLPLFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVC 280

Query: 297 EPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS 337
           EPLEEDSFRPILHHYDGPKFRLEL+V EA+SLLDIF +Q+S
Sbjct: 281 EPLEEDSFRPILHHYDGPKFRLELSVSEALSLLDIFADQNS 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726918|ref|NP_001236375.1| N-rich protein [Glycine max] gi|57898928|emb|CAI44933.1| N-rich protein [Glycine max]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/361 (60%), Positives = 258/361 (71%), Gaps = 27/361 (7%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLND-SIWSNNYGSKRPDERKNFDIRVGGQVNVNP 59
           M+NN   FW+FSDQLR++ S LANLSLND SIWSN+Y SKRPD+R+NFD++     N N 
Sbjct: 1   MDNNND-FWKFSDQLRLE-SGLANLSLNDYSIWSNSYSSKRPDQRRNFDVKGSDFNNNNN 58

Query: 60  FTKGSDLNAFDDGYK---------SMSSNYNDIGLGPIGQIMAPASASQKNVGIN----- 105
            +K  D + F+DG+K         SM  N N+  L   G        S  N  I+     
Sbjct: 59  SSKAFD-DDFNDGWKITNSNGPLFSMPHNNNNNTLEVGGFNKGGGIYSNTNTTISSYHPN 117

Query: 106 -------GGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRN--REENDHHGLGS 156
                  GGFNKGIYS          N ++ ++ N+    NLKG +   + E+  H   S
Sbjct: 118 NLNNNAFGGFNKGIYSNTTSSPYLNNNHHHLDDNNNLNRNNLKGYKTYFKGEDQFHTPKS 177

Query: 157 KSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTM 216
              K  +N  NN K GDN ++N  TKT A+K+FKTLPPSE+LP+NETIGGYIFVCNNDTM
Sbjct: 178 AKKKNTTNNTNNKKHGDNTNNNDGTKTGAEKKFKTLPPSESLPKNETIGGYIFVCNNDTM 237

Query: 217 AENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDK 276
           AENL+RQLFGLPPRYRDSVR ITPGLP+FLYNYSTHQLHGIFEAASFGG+NIDPTAWEDK
Sbjct: 238 AENLQRQLFGLPPRYRDSVRTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDK 297

Query: 277 KCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQD 336
           KCPGESRFPAQV+V+TRK+CEPLEEDSFRPILHHYDGPKFRLEL+VPEA+SLLDIF  Q+
Sbjct: 298 KCPGESRFPAQVQVITRKVCEPLEEDSFRPILHHYDGPKFRLELSVPEALSLLDIFANQN 357

Query: 337 S 337
           S
Sbjct: 358 S 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547527|ref|XP_003542163.1| PREDICTED: uncharacterized protein LOC100785849 [Glycine max]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/375 (59%), Positives = 259/375 (69%), Gaps = 60/375 (16%)

Query: 1   MEN-NQQSFWQFSDQLRVQASNLANLSLND-SIWSNNYGSKRPDERKNFDIRVGGQVNVN 58
           M+N N   FW+FSDQLR++ S LANLSLND SIWSN+Y SKRPD+R+NFD+         
Sbjct: 1   MDNYNSNDFWKFSDQLRLE-SGLANLSLNDYSIWSNSYSSKRPDQRRNFDV--------- 50

Query: 59  PFTKGSDLN--------AFDDGYKSMSSNYNDIGLGPIGQIMAPASASQKNVGINGGFNK 110
              KGSD N         F+DG+K  +SN      GP+  +  P + +   + + GGFNK
Sbjct: 51  ---KGSDFNNSSKPFDDDFNDGWKITNSN------GPLFSM--PHNNNTHTLEV-GGFNK 98

Query: 111 G-IYSKPGHFGLSTINTNNNN----NINSYMNVN-----------------------LKG 142
           G IYS          N NNN     N   Y N                         LKG
Sbjct: 99  GGIYSNTNTTSSLYPNLNNNTLGGFNKGIYSNTTSSPYLNLNNNNNNHLNNNLNSNNLKG 158

Query: 143 NRNREENDHHGLGSKSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNE 202
            +   + +      KS KKNS+  NN K GDN ++N+ TKTAA+K+FKTLPPSE+LP+NE
Sbjct: 159 YKTFFKGEDQFHTPKSAKKNSSNNNNKKHGDNTNNNEATKTAAEKKFKTLPPSESLPKNE 218

Query: 203 TIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAAS 262
           TIGGYIFVCNNDTMAENL+RQLFGLPPRYRDSVR ITPGLPLFLYNYSTHQLHGIFEAAS
Sbjct: 219 TIGGYIFVCNNDTMAENLQRQLFGLPPRYRDSVRTITPGLPLFLYNYSTHQLHGIFEAAS 278

Query: 263 FGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNV 322
           FGG+NIDPTAWEDKKCPGESRFPAQV+V+TRK+CEPLEEDSFRPILHHYDGPKFRLEL+V
Sbjct: 279 FGGSNIDPTAWEDKKCPGESRFPAQVQVITRKVCEPLEEDSFRPILHHYDGPKFRLELSV 338

Query: 323 PEAISLLDIFEEQDS 337
           PEA+SLLDIF  Q+S
Sbjct: 339 PEALSLLDIFANQNS 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645695|gb|ACU23341.1| unknown [Glycine max]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/361 (59%), Positives = 255/361 (70%), Gaps = 27/361 (7%)

Query: 1   MENNQQSFWQFSDQLRVQASNLANLSLND-SIWSNNYGSKRPDERKNFDIRVGGQVNVNP 59
           M+NN   FW+FSDQLR++ S LANLSLND SIWSN+Y SKRPD+R+NFD++     N N 
Sbjct: 1   MDNNND-FWKFSDQLRLE-SGLANLSLNDYSIWSNSYSSKRPDQRRNFDVKGSDFNNNNN 58

Query: 60  FTKGSDLNAFDDGYK---------SMSSNYNDIGLGPIGQIMAPASASQKNVGIN----- 105
            +K  D + F+DG+K         SM  N N+  L   G        S  N  I+     
Sbjct: 59  SSKAFD-DDFNDGWKITNSNGPLFSMPHNNNNNTLEVGGFNKGGGIYSNTNTTISSYHPN 117

Query: 106 -------GGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRN--REENDHHGLGS 156
                  GGFNKGIYS          N ++ ++ N+    NLKG +   + E+  H   S
Sbjct: 118 NLNNNAFGGFNKGIYSNTTSSPYLNNNHHHLDDNNNLNRNNLKGYKTYFKGEDQFHTPKS 177

Query: 157 KSGKKNSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTM 216
              K  +N  NN K GDN ++N  TKT A+K+FKTLPPSE+LP+NETIGGYIFVCNNDTM
Sbjct: 178 AKKKNTTNNTNNKKHGDNTNNNDGTKTGAEKKFKTLPPSESLPKNETIGGYIFVCNNDTM 237

Query: 217 AENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDK 276
           AENL+RQLFGLPPRYRDSVR ITPGLP+FLYNYSTHQLHGIFEAASFGG+NIDPTAWEDK
Sbjct: 238 AENLQRQLFGLPPRYRDSVRTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDK 297

Query: 277 KCPGESRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQD 336
           KCPGESRFPAQV+V+TRK+CEPLEEDSFRPI HHYDGPKFRLEL+VPEA+  LDIF  Q+
Sbjct: 298 KCPGESRFPAQVQVITRKVCEPLEEDSFRPIFHHYDGPKFRLELSVPEALFFLDIFANQN 357

Query: 337 S 337
           S
Sbjct: 358 S 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805420|ref|XP_002870594.1| hypothetical protein ARALYDRAFT_493778 [Arabidopsis lyrata subsp. lyrata] gi|297316430|gb|EFH46853.1| hypothetical protein ARALYDRAFT_493778 [Arabidopsis lyrata subsp. lyrata]

 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/355 (58%), Positives = 241/355 (67%), Gaps = 42/355 (11%)

Query: 3   NNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVN--VNPF 60
           NNQQSFWQFSDQLRVQ  NLANLSLNDSIWS N   K   ER+N DI      N  ++ +
Sbjct: 6   NNQQSFWQFSDQLRVQTPNLANLSLNDSIWSTNSVFK---ERRNLDIAATADKNNQIDYY 62

Query: 61  TKGSDLNAFDDGY--KSMSSNYNDIGLG-------------PIGQIMAPASASQK----N 101
            K +  +  +  +  KS  SN ND+GLG             PI +   P + + K    N
Sbjct: 63  QKKTISDNINSNWNWKSSGSN-NDMGLGFGPVGSKSTVDFNPIDKFNTPFNDTWKFNSVN 121

Query: 102 VGINGGFNKGIYSKPGHFGLSTINTNNNNNINSYMNVNLKGNRNREENDHHGLGSKSGKK 161
           V +NG FNKG+Y+    +G +    NNNN                 + DH     + G K
Sbjct: 122 VNVNGDFNKGVYTSMNKYGYNVNLKNNNNKNKGI------------DEDHQ---IQKGGK 166

Query: 162 NSNKKNNNKDGDNNSDNKDTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLK 221
            + K   N +   N D+K+     DKRFKTLPP+EALPRNETIGGYIFVCNNDTM ENLK
Sbjct: 167 KNRKNYQNNNNQRNEDDKNN--GVDKRFKTLPPAEALPRNETIGGYIFVCNNDTMEENLK 224

Query: 222 RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGE 281
           RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGI+EAASFGGTNI+  A+EDKKCPGE
Sbjct: 225 RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAASFGGTNIELNAFEDKKCPGE 284

Query: 282 SRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQD 336
           SRFPAQVR +TRK+C PLEEDSFRPILHHYDGPKFRLEL+VPE +SLLDIF +Q+
Sbjct: 285 SRFPAQVRAITRKVCLPLEEDSFRPILHHYDGPKFRLELSVPEVLSLLDIFADQN 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2165765	349	AT5G42050 "AT5G42050" [Arabido	0.955	0.922	0.569	1.4e-89
TAIR|locus:2091965	296	AT3G27090 "AT3G27090" [Arabido	0.456	0.520	0.811	2.5e-73
TAIR|locus:2149835	656	AT5G01660 "AT5G01660" [Arabido	0.347	0.178	0.441	5.1e-21
TAIR|locus:2085492	607	AT3G11000 [Arabidopsis thalian	0.388	0.215	0.440	9e-21
TAIR|locus:2156141	738	AT5G61910 "AT5G61910" [Arabido	0.373	0.170	0.376	2.4e-18
TAIR|locus:2059406	691	AT2G32910 "AT2G32910" [Arabido	0.376	0.183	0.382	5.1e-15
TAIR|locus:2063424	879	AT2G35140 "AT2G35140" [Arabido	0.364	0.139	0.387	2.2e-14

TAIR|locus:2165765 AT5G42050 "AT5G42050" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 202/355 (56%), Positives = 229/355 (64%)

Query:     3 NNQQSFWQFSDQLRVQASNLANLSLNDSIWSNNYGSKRPDERKNFDIRVGGQVNVNPF-- 60
             NNQQSFWQFSDQLRVQ  NLANLSLNDSIWS N   K   ER+N DI      N N    
Sbjct:     6 NNQQSFWQFSDQLRVQTPNLANLSLNDSIWSTNSVFK---ERRNLDIAATTDKNNNQIDY 62

Query:    61 ----TKGSDLNAFDDGYKSMSSNYNDIGLG-------------PIGQIMAPASASQKNVG 103
                 T   ++N+ +  +KS  SN ND+GLG             PI +  +P + + K   
Sbjct:    63 YQKKTTSDNINS-NWNWKSSGSN-NDMGLGFGPVGSKSTVDLNPIDKFNSPFNDTWKFNS 120

Query:   104 INGGFNKGIYSKPGHFGLSXXXXXXXXXXXSY-MNVNLKGN-RNREENDHHGLXXXXXXX 161
             +N   N G YS P                  Y  NVNLK N +N+  ++ H +       
Sbjct:   121 VNVNVN-G-YS-PSSAVNGDFNKGVYTSMKKYGYNVNLKNNNKNKGIDEDHQIQKGGKKN 177

Query:   162 XXXXXXXXXXXXXXXXXXXTKTAADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLK 221
                                     DKRFKTLPP+EALPRNETIGGYIFVCNNDTM ENLK
Sbjct:   178 RKNQQNNNNQRNEDDK----NNGLDKRFKTLPPAEALPRNETIGGYIFVCNNDTMEENLK 233

Query:   222 RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGE 281
             RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGI+EAASFGGTNI+  A+EDKKCPGE
Sbjct:   234 RQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAASFGGTNIELNAFEDKKCPGE 293

Query:   282 SRFPAQVRVVTRKICEPLEEDSFRPILHHYDGPKFRLELNVPEAISLLDIFEEQD 336
             SRFPAQVR +TRK+C PLEEDSFRPILHHYDGPKFRLEL+VPE +SLLDIF +Q+
Sbjct:   294 SRFPAQVRAITRKVCLPLEEDSFRPILHHYDGPKFRLELSVPEVLSLLDIFADQN 348

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2091965 AT3G27090 "AT3G27090" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 125/154 (81%), Positives = 137/154 (88%)

Query:   184 AADKRFKTLPPSEALPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLP 243
             A DKRFKTLP SE LPRNE +GGYIFVCNNDTM E++KR LFGLPPRYRDSVRAITPGLP
Sbjct:   142 AVDKRFKTLPASETLPRNEVLGGYIFVCNNDTMQEDMKRHLFGLPPRYRDSVRAITPGLP 201

Query:   244 LFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDS 303
             LFLYNY+THQLHGIFEA +FGGTNID TAWEDKKC GESRFPAQVR+  RKIC+ LEEDS
Sbjct:   202 LFLYNYTTHQLHGIFEATTFGGTNIDATAWEDKKCKGESRFPAQVRIRVRKICKALEEDS 261

Query:   304 FRPILHHYDGPKFRLELNVPEAISLLDIFEEQDS 337
             FRP+LHHYDGPKFRLEL+VPE + LLD+ E+  S
Sbjct:   262 FRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGS 295

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149835 AT5G01660 "AT5G01660" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.1e-21, P = 5.1e-21
 Identities = 53/120 (44%), Positives = 70/120 (58%)

Query:   204 IGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASF 263
             +GG +F C  +T+ E + +QLFGLP  +   V+ I  GLPLFL+NYS   LHGIFEAA  
Sbjct:    18 LGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAGC 77

Query:   264 GGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL--HHYDGPKFRLELN 321
             G  N DP  W        S +PAQV +  R  CEPL E+ F+P +  ++Y    F  EL+
Sbjct:    78 GQLNFDPYGWTSDGSERTS-YPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELD 136

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2085492 AT3G11000 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 9.0e-21, P = 9.0e-21
 Identities = 59/134 (44%), Positives = 76/134 (56%)

Query:   206 GYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGG 265
             G IF C   T+ E   + LFGLP  +   ++ I PGL LFL+NYS   LHGIFEAAS G 
Sbjct:   132 GVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASEGK 191

Query:   266 TNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL-HHYDGPK-FRLELNVP 323
              NID  AW        S +PAQV+V  R  CEPL E+ F P++  +Y+  K F  EL+  
Sbjct:   192 LNIDSKAWSPNGTD-PSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDRG 250

Query:   324 EAISLLDIFEEQDS 337
             +   LL +F+   S
Sbjct:   251 QTNKLLRLFKPSPS 264

GO:0005634 "nucleus" evidence=ISM

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2156141 AT5G61910 "AT5G61910" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 52/138 (37%), Positives = 84/138 (60%)

Query:   198 LPRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGI 257
             L  +E + GYIF+CN  T  +  + ++FG+P   +D V +I PG+ LFLY++    L+G+
Sbjct:    55 LDHHEQLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGV 114

Query:   258 FEAASFGGTNIDPTAWEDKKCPGESRFPAQV--RVVTRKICEPLEEDSFRPILH-HYDGP 314
             +EA   G  +I+P A+E K       +PAQV  R+V    C PL E++F+  ++ +Y G 
Sbjct:   115 YEATVGGRLDIEPEAFEGK-------YPAQVGFRIVMN--CLPLTENTFKSAIYENYKGS 165

Query:   315 KFRLELNVPEAISLLDIF 332
             KF+ EL+  + +SLL +F
Sbjct:   166 KFKQELSPHQVMSLLSLF 183

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2059406 AT2G32910 "AT2G32910" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 52/136 (38%), Positives = 73/136 (53%)

Query:   199 PRNETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIF 258
             P    IGG IF+CN  T  +  +  + G+  + +D V+ I PGL LFLY+Y    L+GIF
Sbjct:   314 PGKVKIGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIF 373

Query:   259 EAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRP-ILHHYDGP-KF 316
             EA+S GG  ++  A+      G S FPAQVR      C PL E  F+  I+ +Y+   KF
Sbjct:   374 EASSAGGMKLERNAF------GGS-FPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNKF 426

Query:   317 RLELNVPEAISLLDIF 332
             + EL   +   L  +F
Sbjct:   427 KTELTHKQVFKLKKLF 442

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2063424 AT2G35140 "AT2G35140" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 50/129 (38%), Positives = 71/129 (55%)

Query:   206 GYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGG 265
             G IF+ NN T  E L R+LFGLP      V+ +  G+ LFL+ +   +LHG+F+A S G 
Sbjct:    23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82

Query:   266 TNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPILH-HYDGP-KFRLELNVP 323
              NI+P A+      G+ +FPAQV+   +  C PL E  F   +H +Y  P KF   L+  
Sbjct:    83 INIEPNAFRSS---GK-QFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKA 138

Query:   324 EAISLLDIF 332
             +   LL +F
Sbjct:   139 QVQRLLKLF 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      337       300   0.00095  115 3  11 22  0.44    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  225 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.46u 0.08s 23.54t   Elapsed:  00:00:02
  Total cpu time:  23.46u 0.08s 23.54t   Elapsed:  00:00:02
  Start:  Fri May 10 02:37:08 2013   End:  Fri May 10 02:37:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P37707	B2_DAUCA	No assigned EC number	0.9032	0.4599	0.7487	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
smart00767	132	smart00767, DCD, DCD is a plant specific domain in	1e-77
pfam10539	130	pfam10539, Dev_Cell_Death, Development and cell de	5e-70

>gnl|CDD|214811 smart00767, DCD, DCD is a plant specific domain in proteins involved in development and programmed cell death

 Score =  233 bits (596), Expect = 1e-77
 Identities = 88/135 (65%), Positives = 99/135 (73%), Gaps = 5/135 (3%)

Query: 202 ETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAA 261
           ET+GGYIF+CNNDT  E  +RQLFGLP  YRD VR I PGLPLFLYNY T +LHGIFEA 
Sbjct: 1   ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEAT 60

Query: 262 SFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFR-PILHHYDGP-KFRLE 319
           SFGG NIDP A+E KK   ESRFPAQVR   RK C+PL E  FR  IL +YDGP KFR E
Sbjct: 61  SFGGLNIDPNAFEGKK---ESRFPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFE 117

Query: 320 LNVPEAISLLDIFEE 334
           L+  + + LLD+F  
Sbjct: 118 LSHAQVLRLLDLFAP 132

The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. Length = 132

>gnl|CDD|204508 pfam10539, Dev_Cell_Death, Development and cell death domain

 Score =  214 bits (546), Expect = 5e-70
 Identities = 76/131 (58%), Positives = 90/131 (68%), Gaps = 3/131 (2%)

Query: 204 IGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASF 263
           +GG IF CNN T  E  K+QLFGLP RY D V+ I PGLPLFL+NY   +LHGIFEAAS 
Sbjct: 1   LGGVIFGCNNKTRRECFKKQLFGLPARYIDYVKNIKPGLPLFLFNYDDRKLHGIFEAASN 60

Query: 264 GGTNIDPTAWEDKKCPGESRFPAQVRVVTRKICEPLEEDSFRPIL--HHYDGPKFRLELN 321
           GG NIDP AW  K   GE+R+PAQVR   RK C+PL E  FRP +  ++YD  KFR EL+
Sbjct: 61  GGMNIDPNAWGSKG-KGETRYPAQVRFRIRKDCKPLPESKFRPAIIENYYDKNKFRFELS 119

Query: 322 VPEAISLLDIF 332
             +   LLD+F
Sbjct: 120 HKQVNKLLDLF 130

The DCD domain is found in plant proteins involved in development and cell death. The DCD domain is an approximately 130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N-terminus and a PAQV and a PLxE motif towards the C-terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognisable motifs, like the KELCH repeats or the ParB domain. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
smart00767	132	DCD DCD is a plant specific domain in proteins inv	100.0
PF10539	130	Dev_Cell_Death: Development and cell death domain;	100.0
PRK00809	144	hypothetical protein; Provisional	98.5
COG1673	151	Uncharacterized protein conserved in archaea [Func	97.55
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	97.06
PRK02268	141	hypothetical protein; Provisional	96.93

>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death

Probab=100.00  E-value=4.1e-60  Score=405.57  Aligned_cols=130  Identities=66%  Similarity=1.159  Sum_probs=124.5

Q ss_pred             CCcceEEEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEeccCceEeeeeeeccCCCCccCCcCccCCCCCCC
Q 019701          202 ETIGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGE  281 (337)
Q Consensus       202 ~~lgG~IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~  281 (337)
                      +++||+|||||++|++|||+++|||||+.++++|++|||||+||||||++|+|||||||+|+|+|||+|.||.+++   +
T Consensus         1 ~~lgG~IF~Cn~~T~~Ecf~~~lFGLP~~~~~~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~---~   77 (132)
T smart00767        1 ETLGGYIFMCNNDTKEECFRRQLFGLPRGYRDFVRNIKPGLPLFLYNYDTRKLHGIFEATSFGGLNIDPNAFEGKK---E   77 (132)
T ss_pred             CCcceEEEEeCCCCHHHHHhcccccCChhhhhhhheeCCCCEEEEEecCCceeeeEEEeccCCcCCcChhHhcCCC---C
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999999875   5


Q ss_pred             CcCCceEEEEEeeeccCCCcccchhhh-hccCCC-CccccCCHHHHHHHHHhhhh
Q 019701          282 SRFPAQVRVVTRKICEPLEEDSFRPIL-HHYDGP-KFRLELNVPEAISLLDIFEE  334 (337)
Q Consensus       282 s~FPAQVRf~i~k~C~PL~EseFKpiI-~~Y~~~-KF~fELs~~QV~~Ll~LF~~  334 (337)
                      ++|||||||+|+|+|+||+|++||++| +||.++ ||++|||++||++|++||++
T Consensus        78 s~fPaQVrf~i~~~C~PL~E~~f~~aI~~nY~~~~kF~~eLs~~Qv~~L~~LF~~  132 (132)
T smart00767       78 SRFPAQVRFRIRKDCKPLPESEFRSAILENYDGPSKFRFELSHAQVLRLLDLFAP  132 (132)
T ss_pred             CccCcEEEEEEeeeecCCCHHHHHHHHHHhCcCCccccccCCHHHHHHHHHHhcC
Confidence            899999999999999999999999977 678775 99999999999999999975

The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.

>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death

Probab=100.00  E-value=5.6e-60  Score=403.79  Aligned_cols=128  Identities=52%  Similarity=0.931  Sum_probs=123.1

Q ss_pred             cceEEEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEeccCceEeeeeeeccCCCCccCCcCccCCCCCCCCc
Q 019701          204 IGGYIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKCPGESR  283 (337)
Q Consensus       204 lgG~IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~  283 (337)
                      |||||||||++|++|||+++|||||++|+++|++||||||||||||++|+|||||||+|+|+|||+|.||.+++ .++++
T Consensus         1 lgG~IF~Cn~~T~~ECf~~~lFGLP~~~~~~V~~I~pG~~LFLfn~~~r~L~GifeA~S~G~~ni~p~Af~~~~-~~~~~   79 (130)
T PF10539_consen    1 LGGFIFMCNNKTKPECFRRQLFGLPAGHKDFVKKIKPGMPLFLFNYSDRKLYGIFEATSDGGMNIEPYAFSGSG-SGESP   79 (130)
T ss_pred             CceEEEEECCCCHHHHHhcccccCChhhhhHHheeCCCCEEEEEEcCCCEEEEEEEecCCCccCcChhhhCCCC-CCCcc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999987 46799


Q ss_pred             CCceEEEEEeeeccCCCcccchhhh-h-ccCCCCccccCCHHHHHHHHHhh
Q 019701          284 FPAQVRVVTRKICEPLEEDSFRPIL-H-HYDGPKFRLELNVPEAISLLDIF  332 (337)
Q Consensus       284 FPAQVRf~i~k~C~PL~EseFKpiI-~-~Y~~~KF~fELs~~QV~~Ll~LF  332 (337)
                      |||||||+|+++|+||+|++||++| + ||.++||+||||++||++|++||
T Consensus        80 fPAQVrf~i~~~C~PL~E~~fk~aI~~Ny~~~~kF~~eLs~~Qv~~L~~LF  130 (130)
T PF10539_consen   80 FPAQVRFRIRWDCPPLPESQFKPAIKDNYYDKNKFRFELSHQQVRKLLSLF  130 (130)
T ss_pred             cceEEEEEEeeeeecCCHHHHHHHHHHhCCCCCcccCcCCHHHHHHHHHhC
Confidence            9999999999999999999999999 4 55668999999999999999998

The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).

>PRK00809 hypothetical protein; Provisional

Probab=98.50  E-value=4.3e-07  Score=78.98  Aligned_cols=97  Identities=25%  Similarity=0.473  Sum_probs=76.9

Q ss_pred             EEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEecc-------CceEeeeeeeccCCCCccCCcCc-cCCCCC
Q 019701          208 IFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYS-------THQLHGIFEAASFGGTNIDPTAW-EDKKCP  279 (337)
Q Consensus       208 IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys-------~RkLhGIFEAaS~Gg~NIdP~AF-~s~~~~  279 (337)
                      |++-+.+....|.++.+||+|.+++.++++++|||.||.|.-.       ...+.||.|.+++..  .||.+| .+.+.+
T Consensus         5 i~~~~~~~~~~~~~~gv~g~~~~~rn~lr~Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y--~D~t~~~p~~~~~   82 (144)
T PRK00809          5 LCITNEDNWEVIKDKNVWGVPERYKNTIEKVKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWY--EDSTPIFPAEPVR   82 (144)
T ss_pred             EEecCHHHHHHHHhCCEeecchhhhhHHhhCCCCCEEEEEECCccCCCCCCceEEEEEEEecCcc--cCCccCCCccccC
Confidence            5566778889999999999999999999999999999999998       578999999999875  455544 333334


Q ss_pred             CCCcCCceEEEEEeeeccCCCcccchhhh
Q 019701          280 GESRFPAQVRVVTRKICEPLEEDSFRPIL  308 (337)
Q Consensus       280 g~s~FPAQVRf~i~k~C~PL~EseFKpiI  308 (337)
                      .+.+||.+|+++....++  .+..++++|
T Consensus        83 ~~~~~p~rvdV~~~~~~~--~~v~l~~L~  109 (144)
T PRK00809         83 PKEIYPYRVKLKPVKIFE--EPIDFKPLI  109 (144)
T ss_pred             CCCCceEEEEEEEeeecC--CcccHHHHH
Confidence            678999999999885544  224455553

>COG1673 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.55  E-value=0.00013  Score=65.14  Aligned_cols=85  Identities=20%  Similarity=0.389  Sum_probs=71.5

Q ss_pred             hhhhccCCccchhhhhccCCCCcEEEEeccCc-------eEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEe
Q 019701          221 KRQLFGLPPRYRDSVRAITPGLPLFLYNYSTH-------QLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTR  293 (337)
Q Consensus       221 ~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~R-------kLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~  293 (337)
                      .+.++|.|..+..+...|++|+.|..|.....       ++.|||||+|... -.+...|...+.++...||-+|+++++
T Consensus        23 ~k~i~g~~~k~~~v~~~ik~g~~~v~y~~~~~~~~~~~~~iv~v~ev~se~y-~ds~r~f~~~~~~~~~~~~~r~k~~p~  101 (151)
T COG1673          23 EKGIYGVREKHENVEEKIKEGDRLVIYVRQRGEKERHEPKIVGVFEVGSEPY-SDSSRIFKIDPFRGDETFPYRVKIRPV  101 (151)
T ss_pred             ccceeecCCCCccHHHhhCccceeEEEeeecchhhccCccEEEEEEeecccc-ccccccccCCCCCCccccccccCcceE
Confidence            45789999999999999999999999986654       8999999999988 455556887776667899999999999


Q ss_pred             eeccCCCcccchhhh
Q 019701          294 KICEPLEEDSFRPIL  308 (337)
Q Consensus       294 k~C~PL~EseFKpiI  308 (337)
                      +..+  ....|++.|
T Consensus       102 ~i~e--~~i~~k~~~  114 (151)
T COG1673         102 KVGE--VHIKFKPLI  114 (151)
T ss_pred             EEEe--cccCcchhh
Confidence            9866  347788765

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=97.06  E-value=0.00094  Score=56.17  Aligned_cols=97  Identities=15%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             hhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCCCCC--CcCCceEEEEEeeecc-CCCcccchh--
Q 019701          234 SVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKCPGE--SRFPAQVRVVTRKICE-PLEEDSFRP--  306 (337)
Q Consensus       234 ~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~--s~FPAQVRf~i~k~C~-PL~EseFKp--  306 (337)
                      .+++||||+.+|+|.-.  .+.++||.|++++...+-.+. +...+....  .++|..|+++...... ||+-.+.|.  
T Consensus        36 ~l~~mk~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~~~-~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk~~~  114 (143)
T PF01878_consen   36 NLKRMKPGDKVIFYHSGCKERGIVAIGEVVSEPYPDPTAF-DPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELKAEP  114 (143)
T ss_dssp             HHHC--TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GGGT-STTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHHC-G
T ss_pred             hhhcCCCCCEEEEEEcCCCCCEEEEEEEEeccccCCCccc-cccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHhcCC
Confidence            78899999999999998  689999999999866443332 111111111  3588888888876555 665444443  


Q ss_pred             hhhc---cCCCCcc-ccCCHHHHHHHHHh
Q 019701          307 ILHH---YDGPKFR-LELNVPEAISLLDI  331 (337)
Q Consensus       307 iI~~---Y~~~KF~-fELs~~QV~~Ll~L  331 (337)
                      .++.   ...+.+. ++||.+|...|++|
T Consensus       115 ~l~~l~~i~~~r~s~~~it~~~~~~I~~~  143 (143)
T PF01878_consen  115 ELENLSFIRNKRLSVFPITEEDFEAIMEM  143 (143)
T ss_dssp             GGTTSHHHHTTT-SEEEE-HHHHHHHHHH
T ss_pred             ccccChhhhcCCcCeEEECHHHHHHHHhC
Confidence            2432   2233454 59999999999886

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

>PRK02268 hypothetical protein; Provisional

Probab=96.93  E-value=0.0019  Score=56.98  Aligned_cols=97  Identities=18%  Similarity=0.233  Sum_probs=69.9

Q ss_pred             hhhhccCCccchhhhhccCCCCcEEEEeccC--------ceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEE
Q 019701          221 KRQLFGLPPRYRDSVRAITPGLPLFLYNYST--------HQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVT  292 (337)
Q Consensus       221 ~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~--------RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i  292 (337)
                      +..+++++.+++..+++|||||.|..|--.+        ..+.||++.+++-...       .  .++.+-||.+++++.
T Consensus        19 ~~gf~qv~hgK~apl~RmkpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq-------~--~m~~~f~P~Rr~v~~   89 (141)
T PRK02268         19 EGGFMQVCHGKAAPLRRMKPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ-------V--EMAPGFIPWRRDVDY   89 (141)
T ss_pred             hCCEEEeCCCccchhhcCCCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe-------c--ccCCCceeEEEEeeE
Confidence            3467899999999999999999999998433        3788899988763322       1  134567999999988


Q ss_pred             eeeccCCCcccchhhhh--ccC------CCCcc---ccCCHHHHHHHHH
Q 019701          293 RKICEPLEEDSFRPILH--HYD------GPKFR---LELNVPEAISLLD  330 (337)
Q Consensus       293 ~k~C~PL~EseFKpiI~--~Y~------~~KF~---fELs~~QV~~Ll~  330 (337)
                      .    |..|..++|+|.  .+.      +.+|+   +|++.+..+-+.+
T Consensus        90 ~----~~~e~pi~pLi~~L~Fi~~k~~Wg~~fr~g~~eI~e~Df~~I~~  134 (141)
T PRK02268         90 Y----PCAETPIRPLLDHLDFTEDRKNWGYQFRFGHFEISKHDFETIAS  134 (141)
T ss_pred             e----ecCccchHHhhcccceeeCcchhhHhhcCCcEecCHHHHHHHHH
Confidence            7    347788999885  232      23666   4777776654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	98.18
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	98.18
2ar1_A	172	Hypothetical protein; structural genomics, PSI, pr	94.25
2eve_A	157	Hypothetical protein pspto5229; alpha-beta protein	93.95
1zce_A	155	Hypothetical protein ATU2648; alpha-beta protein.,	92.99
2gbs_A	145	Hypothetical protein RPA0253; alpha-beta, RPR3, NE	87.75
3eop_A	176	Thymocyte nuclear protein 1; unknown function, nuc	82.7

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=98.18  E-value=5e-06  Score=70.77  Aligned_cols=122  Identities=17%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             EEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEE-----ecc--CceEeeeeeeccCCCCccCCcCccCC-CCC
Q 019701          208 IFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLY-----NYS--THQLHGIFEAASFGGTNIDPTAWEDK-KCP  279 (337)
Q Consensus       208 IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLY-----nys--~RkLhGIFEAaS~Gg~NIdP~AF~s~-~~~  279 (337)
                      |+..+.++-+.|.+..+||++.+++.+++.+||||.+|.|     .-.  ...+.||.|.++++.  .|+++|-.. +..
T Consensus         8 L~~se~~~~~~~~~~g~wGVn~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y--~D~t~~dp~~~y~   85 (147)
T 2p5d_A            8 LCITNEDNWKVIKEKKIWGVAERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVY--KDSSKIFKPTPRN   85 (147)
T ss_dssp             EEEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCE--ECCCCCSCCBTTB
T ss_pred             eeecCHHHHHHHHHcCeeecCHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecccc--cCCcccCcCccCc
Confidence            4555556677788889999999999999999999999999     444  359999999999665  466665432 222


Q ss_pred             CCCcCCceEEEEEeeec-cCCCcccchhhhh------ccCCCCcc---ccCCHHHHHHHHHh
Q 019701          280 GESRFPAQVRVVTRKIC-EPLEEDSFRPILH------HYDGPKFR---LELNVPEAISLLDI  331 (337)
Q Consensus       280 g~s~FPAQVRf~i~k~C-~PL~EseFKpiI~------~Y~~~KF~---fELs~~QV~~Ll~L  331 (337)
                      ++.++|..|.|+....+ .|++=.+.|+.++      .....-++   ++++.+|-..+++|
T Consensus        86 ~~~~~w~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~~L~r~gv~pV~~~~~~~I~~~  147 (147)
T 2p5d_A           86 PNEKFPYRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSGHLMGKAMREIPEEDYKLIVGN  147 (147)
T ss_dssp             TTCCCCEEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC--CCCSEEEECHHHHHHHHTC
T ss_pred             CCCCCceEEEEEEEeecCCccCHHHHHhhhhhcccchhhHHHHhcCCceECCHHHHHHHHhC
Confidence            46789999999977664 4444333332221      12221123   47788877776653

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=98.18  E-value=9.6e-06  Score=68.89  Aligned_cols=113  Identities=19%  Similarity=0.372  Sum_probs=78.9

Q ss_pred             ecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEeccC---------ceEeeeeeeccCCCCccCCcCc-cCCCCCC
Q 019701          211 CNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYST---------HQLHGIFEAASFGGTNIDPTAW-EDKKCPG  280 (337)
Q Consensus       211 CN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~---------RkLhGIFEAaS~Gg~NIdP~AF-~s~~~~g  280 (337)
                      .+.+.-+.+.+..++|++.+++.+++++||||.+|.|.-..         +.+.||+|+++++.  .+|++| .+.+.. 
T Consensus         8 ss~d~~~~~~~~g~~GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y--~D~t~~~~~~~~~-   84 (145)
T 2hd9_A            8 TNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPY--VDFSRIFKPHRGG-   84 (145)
T ss_dssp             ECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCE--ECCCCCSCCTTSS-
T ss_pred             CCHHHHHHHHHcCccccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcE--eCCCccCCCcccc-
Confidence            33344455666788999989999999999999999999876         69999999999665  344444 333222 


Q ss_pred             CCcCCceEEEEEeeeccCCCcccchhhhhccC--------CCCc----cccCCHHHHHHHHH
Q 019701          281 ESRFPAQVRVVTRKICEPLEEDSFRPILHHYD--------GPKF----RLELNVPEAISLLD  330 (337)
Q Consensus       281 ~s~FPAQVRf~i~k~C~PL~EseFKpiI~~Y~--------~~KF----~fELs~~QV~~Ll~  330 (337)
                      ...+|.+|.++++..    .+..++++++.-.        +-.|    -++++.++-+.+++
T Consensus        85 ~~~~p~rv~v~~v~~----~~i~~~~l~~~l~fi~~k~~w~~~l~r~gv~pV~~~d~~~I~~  142 (145)
T 2hd9_A           85 KETYPYRVKIKPIKI----GEINFKPLINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEK  142 (145)
T ss_dssp             CCCCCEEEEEEEEEE----EEEESGGGGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHH
T ss_pred             cCCeeEEEeCEEEee----ccCcHHHHHhhhhhhcccccccceecccCceEcCHHHHHHHHH
Confidence            458999999988854    4455566554211        1122    34888888777664

>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8

Probab=94.25  E-value=0.093  Score=46.68  Aligned_cols=107  Identities=19%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             cCCccc-hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec
Q 019701          226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC  296 (337)
Q Consensus       226 GLP~~h-~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C  296 (337)
                      |+--.. +.+++.+++|+.+|+|.-.  ...++||.|.++.+.  .||.+|.....     . .+.+-=..|.|+.+..+
T Consensus        46 GVRNyqARN~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~y--pD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~  123 (172)
T 2ar1_A           46 GVRNYAARNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAY--DDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARW  123 (172)
T ss_dssp             CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred             CcCcHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeecc--CCcccccccCcccCcccCCCCCCeEEEEEEEeeec
Confidence            665433 6789999999999999988  679999999999766  57777753211     0 01111135666655444


Q ss_pred             -cCCCcccchh--hhhc---cCCCCcc-ccCCHHHHHHHHHhhhh
Q 019701          297 -EPLEEDSFRP--ILHH---YDGPKFR-LELNVPEAISLLDIFEE  334 (337)
Q Consensus       297 -~PL~EseFKp--iI~~---Y~~~KF~-fELs~~QV~~Ll~LF~~  334 (337)
                       .||+-++.|.  .++.   ...+.-. ..+|.+|-..|++|=.+
T Consensus       124 ~~pvtL~eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~~e  168 (172)
T 2ar1_A          124 DTVLTLHELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEE  168 (172)
T ss_dssp             EEEEEHHHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhcCcccccCeeeeccCCCceecCHHHHHHHHHhhhh
Confidence             5666665553  4432   1223333 48999999988887543

>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A

Probab=93.95  E-value=0.14  Score=44.97  Aligned_cols=104  Identities=18%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             cCCccc-hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec
Q 019701          226 GLPPRY-RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC  296 (337)
Q Consensus       226 GLP~~h-~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C  296 (337)
                      |+--.. +.+++.+++|+.+|+|.-.  ...+.||.|.++.+.  .||++|.....     . .+.+-=..|.|+.+..+
T Consensus        28 GVRNyqArN~mr~Mk~GD~~ffYHS~c~~pgIvGi~eVv~e~y--pD~t~fdp~s~YyDpks~~~~prw~~VdV~~v~~~  105 (157)
T 2eve_A           28 GVRNYQARNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAY--PDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIF  105 (157)
T ss_dssp             CCCCHHHHHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEE
T ss_pred             CcccHHHHHHHHhcCCCCEEEEEecCCCCCEEEEEEEEeEccC--CCcccccccCcCcCcccCCCCCCEEEEEEEEeeec
Confidence            665333 6789999999999999887  679999999999766  67888753211     0 01111135666655444


Q ss_pred             -cCCCcccchh--hhhc---cC-CCCcc-ccCCHHHHHHHHHh
Q 019701          297 -EPLEEDSFRP--ILHH---YD-GPKFR-LELNVPEAISLLDI  331 (337)
Q Consensus       297 -~PL~EseFKp--iI~~---Y~-~~KF~-fELs~~QV~~Ll~L  331 (337)
                       .||+-++.|.  .++.   .. ++.-. +.+|.+|-..+++|
T Consensus       106 ~~pv~L~elK~~~~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l  148 (157)
T 2eve_A          106 KNVLGLGYLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILAL  148 (157)
T ss_dssp             EEEEEHHHHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred             CCccCHHHHhcCcccccCceeeccCCcCceecCHHHHHHHHHH
Confidence             5666666663  4542   22 23333 48999999888876

>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8

Probab=92.99  E-value=0.15  Score=44.59  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             cCCccc-hhhhhccCCCCcEEEEecc-CceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEeeec-cCCCcc
Q 019701          226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED  302 (337)
Q Consensus       226 GLP~~h-~d~VrkIKPGmpLFLYnys-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~k~C-~PL~Es  302 (337)
                      |+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++++.  .||.+|..+++       ..|.|+....+ .||+-+
T Consensus        31 GVRNyqArN~mr~Mk~GD~~fFYHS~~~~gIvGi~eVv~e~y--pD~t~~d~Prw-------~~VdV~~v~~~~~pvtL~  101 (155)
T 1zce_A           31 GVRNYQARNNMRAMKIGDKGFFYHSNEGLDVVGIVEVCALSH--PDSTAEGDLKW-------DCVDIRAVCDMPQPVSLK  101 (155)
T ss_dssp             CCCCHHHHHHHHTCCTTCEEEEEETTTTCEEEEEEEEEEEEE--ECTTSTTCSSC-------EEEEEEEEEEEEEEEEHH
T ss_pred             CcccHHHHHHHHhccCCCEEEEEEeCCCCceEEEEEEeeecc--CCCCcCCCCCe-------EEEEEEEccccCCcccHH
Confidence            665443 6789999999999999877 337999999999876  47888763322       34555554443 566666


Q ss_pred             cchh--hhhc---cCCCCc-cccCCHHHHHHHHHhh
Q 019701          303 SFRP--ILHH---YDGPKF-RLELNVPEAISLLDIF  332 (337)
Q Consensus       303 eFKp--iI~~---Y~~~KF-~fELs~~QV~~Ll~LF  332 (337)
                      +.|.  .++.   ...+.- -..+|.+|-..+++|=
T Consensus       102 eLK~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l~  137 (155)
T 1zce_A          102 DVKANPKLEKMSLVTSMRLSVQPVTEEEYLEVCRMG  137 (155)
T ss_dssp             HHHHCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHT
T ss_pred             HHhcCCCcccCeeeeccCCCceeeCHHHHHHHHHhh
Confidence            6663  4432   122333 3488999998888774

>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8

Probab=87.75  E-value=0.85  Score=39.48  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=64.0

Q ss_pred             cCCccc-hhhhhccCCCCcEEEEecc-CceEeeeeeeccCCCCccCCcCccCCCCCCCCcCCceEEEEEeeec-cCCCcc
Q 019701          226 GLPPRY-RDSVRAITPGLPLFLYNYS-THQLHGIFEAASFGGTNIDPTAWEDKKCPGESRFPAQVRVVTRKIC-EPLEED  302 (337)
Q Consensus       226 GLP~~h-~d~VrkIKPGmpLFLYnys-~RkLhGIFEAaS~Gg~NIdP~AF~s~~~~g~s~FPAQVRf~i~k~C-~PL~Es  302 (337)
                      |+--.. +.+++.+++|+.+|+|.-. .+.+.||.|.++.+.  .||.+  .++     ++ ..|.|+....+ .||+-+
T Consensus        30 GVRNyqArn~mr~Mk~GD~~ffYHS~~~~gIvGi~eVv~e~y--pD~t~--~~p-----rw-~~VdV~~v~~~~~pvtL~   99 (145)
T 2gbs_A           30 GVRNHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAY--PDPTD--ASG-----KF-VCVDIKADKPLKTPVTLA   99 (145)
T ss_dssp             CCCCHHHHHHHHHCCTTCEEEEEETTTTCEEEEEEEEEEEEE--ECTTC--TTS-----CS-EEEEEEEEEEEEEEEEHH
T ss_pred             CcccHHHHHHHHhcCCCCEEEEEEeCCCCceEEEEEEEEecc--CCCCC--CCC-----CE-EEEEEEEceecCCcccHH
Confidence            555433 6789999999999999877 337999999999865  24443  111     11 34666655444 567666


Q ss_pred             cchh--hhhc---cCCCCc-cccCCHHHHHHHHHhhhh
Q 019701          303 SFRP--ILHH---YDGPKF-RLELNVPEAISLLDIFEE  334 (337)
Q Consensus       303 eFKp--iI~~---Y~~~KF-~fELs~~QV~~Ll~LF~~  334 (337)
                      +.|.  .++.   ...+.- -..+|.+|-..+++|=..
T Consensus       100 elK~~~~L~~m~lvr~~RLSV~pVt~~ew~~I~~l~~~  137 (145)
T 2gbs_A          100 AVKAEPRLADMALMKYSRLSVQPVTAEEWKLVCKMGGL  137 (145)
T ss_dssp             HHHHCTTGGGSHHHHCTTCSSEEECHHHHHHHHHHTTC
T ss_pred             HHhcCcCcccCeeeeccCCCceeeCHHHHHHHHHhhcc
Confidence            6663  4432   122333 348899999988887543

>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0

Probab=82.70  E-value=0.97  Score=40.45  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC-----C-CCCcCCceEEEEEeeec-cCCCcc
Q 019701          232 RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC-----P-GESRFPAQVRVVTRKIC-EPLEED  302 (337)
Q Consensus       232 ~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~-----~-g~s~FPAQVRf~i~k~C-~PL~Es  302 (337)
                      +.+++.+++|+..|+|.-.  ..-+.||.|.++.+.  .||+||.....     + ...+-=.-|.|+.+..+ .||+-+
T Consensus        46 RN~mR~Mk~GD~~fFYHSnck~pgIvGi~eVv~e~y--pD~T~fDp~s~YyDpkS~~~~prW~~VdV~~v~~~~~~vtL~  123 (176)
T 3eop_A           46 RNFLRAMKLGEEAFFYHSNCKEPGIAGLMKIVKEAY--PDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLA  123 (176)
T ss_dssp             HHHHHHCCTTCEEEEEECCSSSCEEEEEEEEEEEEE--ECGGGTCTTSTTCCTTCCTTSCSCEEEEEEEEEEEEEEEEHH
T ss_pred             HHHHHhcCCCCEEEEEecCCCCCeEEEEEEEeeccc--cCCcccCCCCCCCCccCcCCCCCEEEEEEEEeeecCCcccHH
Confidence            5689999999999999987  569999999999876  67778764321     0 00111112444433333 356655


Q ss_pred             cchhh----------hhc---cCCCCcc-ccCCHHHHHHHHHh
Q 019701          303 SFRPI----------LHH---YDGPKFR-LELNVPEAISLLDI  331 (337)
Q Consensus       303 eFKpi----------I~~---Y~~~KF~-fELs~~QV~~Ll~L  331 (337)
                      +.|..          ++.   ...+.-. ..+|.+|-..+++|
T Consensus       124 eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~PVt~~ew~~I~~l  166 (176)
T 3eop_A          124 ELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSL  166 (176)
T ss_dssp             HHHHHHHHHHHHTCTTSSCHHHHCTTCSEEEECHHHHHHHHHG
T ss_pred             HHhcCcccccccccccccCceeccCccCceecCHHHHHHHHHH
Confidence            55532          221   1122222 37888888777776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	98.44
d2evea1	148	Hypothetical protein PSPTO5229 {Pseudomonas syring	91.64
d2ar1a1	157	Hypothetical protein LmjF36.6870 {Leishmania major	80.24

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.44  E-value=2.6e-07  Score=76.49  Aligned_cols=118  Identities=19%  Similarity=0.385  Sum_probs=89.4

Q ss_pred             EEEeecCcChHHhhhhhhccCCccchhhhhccCCCCcEEEEeccCc---------eEeeeeeeccCCCCccCCcCccCCC
Q 019701          207 YIFVCNNDTMAENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTH---------QLHGIFEAASFGGTNIDPTAWEDKK  277 (337)
Q Consensus       207 ~IFmCN~~T~~ECf~r~LFGLP~~h~d~VrkIKPGmpLFLYnys~R---------kLhGIFEAaS~Gg~NIdP~AF~s~~  277 (337)
                      .|++++.+..+.+.++.++|++.+++..+++|+||+.|+.|.-...         ..+||+|++|+-.- .+...|.+..
T Consensus         4 Wi~v~s~e~~~~~~~~g~~~~~~~k~~~~~rikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~-d~t~i~~~~~   82 (145)
T d2hd9a1           4 WICITNRENWEVIKRHNVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV-DFSRIFKPHR   82 (145)
T ss_dssp             EEEEECHHHHHHHHHHCEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE-CCCCCSCCTT
T ss_pred             EEEeCCHHHHHHHHhCCEEeccCCchhhHhhCCCCCEEEEEeCccccCCCcccccEEEEEEEEecccee-cccccccccc
Confidence            4777888889999999999999999999999999999999987643         59999999987663 4444576543


Q ss_pred             CCCCCcCCceEEEEEeeeccCCCcccchhhhh--ccCC-------CCccc---cCCHHHHHHHHH
Q 019701          278 CPGESRFPAQVRVVTRKICEPLEEDSFRPILH--HYDG-------PKFRL---ELNVPEAISLLD  330 (337)
Q Consensus       278 ~~g~s~FPAQVRf~i~k~C~PL~EseFKpiI~--~Y~~-------~KF~f---ELs~~QV~~Ll~  330 (337)
                       ++...||.+|++.....    .|..++|+++  .|..       ..+++   +|+.....-+.+
T Consensus        83 -~~~~~~P~R~~v~~~~~----~ev~i~~l~~~L~fi~~k~~W~~y~~r~g~~~I~~~D~~lI~~  142 (145)
T d2hd9a1          83 -GGKETYPYRVKIKPIKI----GEINFKPLINDLKFIKNKKRWSMHFFGKAMRELPEEDYKLIEK  142 (145)
T ss_dssp             -SSCCCCCEEEEEEEEEE----EEEESGGGGGGCTTCCCSTTGGGGTTTCSEEEECHHHHHHHHH
T ss_pred             -cCCceEEEEEEeEEeec----ccccHHHHHhHHHhhcCchhhhHHHhcCCceecCHHHHHHHHH
Confidence             46788999999998754    4688899885  3332       22333   677766554443

>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PSPTO5229
species: Pseudomonas syringae [TaxId: 317]

Probab=91.64  E-value=0.21  Score=41.36  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             hhhhhccCCCCcEEEEecc--CceEeeeeeeccCCCCccCCcCccCCCC------CCCCcCCceEEEEEeeecc-CCCcc
Q 019701          232 RDSVRAITPGLPLFLYNYS--THQLHGIFEAASFGGTNIDPTAWEDKKC------PGESRFPAQVRVVTRKICE-PLEED  302 (337)
Q Consensus       232 ~d~VrkIKPGmpLFLYnys--~RkLhGIFEAaS~Gg~NIdP~AF~s~~~------~g~s~FPAQVRf~i~k~C~-PL~Es  302 (337)
                      +.+++..+.|+..|+|.-.  ...++||-|.++.+.  .||.||.....      ..+.+--.-|.++....+. ||+-+
T Consensus        34 rn~lr~M~~GD~~~fYHS~~~~~~IvGia~V~~~ay--pDpt~~d~~s~y~D~ks~~e~prw~~Vdv~~~~~~~~~vtL~  111 (148)
T d2evea1          34 RNFLRTMAEGDEFFFYHSSCPEPGIAGIGKIVKTAY--PDPTALDPDSHYHDAKATTEKNPWSALDIGFVDIFKNVLGLG  111 (148)
T ss_dssp             HHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEEEEEEEHH
T ss_pred             HHHHHhcccCCEEEEEecCCCCCceEEEEEEEEecc--ccCccccCCCceeccccccCCCCeeEEEEEeccccCCcccHH
Confidence            5688999999999999875  578999999999876  78888875321      1233334567777665554 55544


Q ss_pred             cch--hhhhcc----CCCCcc-ccCCHHHHHHHHHh
Q 019701          303 SFR--PILHHY----DGPKFR-LELNVPEAISLLDI  331 (337)
Q Consensus       303 eFK--piI~~Y----~~~KF~-fELs~~QV~~Ll~L  331 (337)
                      +.|  +.++..    .++.-. ..+|.+|-..+++|
T Consensus       112 elK~~~~l~~m~Lv~kgsRLSV~PVt~~ew~~I~~L  147 (148)
T d2evea1         112 YLKQQSQLEQLPLVQKGSRLSVMPVTAEQWAAILAL  147 (148)
T ss_dssp             HHHTCGGGTTCGGGSTTCCCSEEEECHHHHHHHHHH
T ss_pred             HHhcCcccccCceeccCCccCeeecCHHHHHHHHcC
Confidence            444  345432    123333 48899998888776

>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein LmjF36.6870
species: Leishmania major [TaxId: 5664]

Probab=80.24  E-value=1.2  Score=36.69  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             hhhhhccCCCCcEEEEeccCc--eEeeeeeeccCCCCccCCcCccCCC-----CCCCCc---CCceEEEEEeeeccCCCc
Q 019701          232 RDSVRAITPGLPLFLYNYSTH--QLHGIFEAASFGGTNIDPTAWEDKK-----CPGESR---FPAQVRVVTRKICEPLEE  301 (337)
Q Consensus       232 ~d~VrkIKPGmpLFLYnys~R--kLhGIFEAaS~Gg~NIdP~AF~s~~-----~~g~s~---FPAQVRf~i~k~C~PL~E  301 (337)
                      +.+++.+++|+.+|+|.-..+  -+.||-+.++.+.  ++|.+|....     .+....   +=+.|++..... .|++-
T Consensus        39 rn~lr~Mk~GD~~~fYHS~~~~~~i~g~~~v~~~~~--pd~t~~d~~s~y~Dpks~~~~p~w~~VdV~~v~~~~-~pVtL  115 (157)
T d2ar1a1          39 RNNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAY--DDFTALDKTSEYFDPKATKEKNPWKMVDVKFVARWD-TVLTL  115 (157)
T ss_dssp             HHHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEE--ECGGGGCTTSTTCCTTCCSSCCCCEEEEEEEEEEEE-EEEEH
T ss_pred             HHHHHhCcCCCEEEEEEcCCCCCceEEEEEEecccc--CCcccccCCccccCcccccCCCceEEEEEEEeeecC-CccCH
Confidence            568899999999999998755  5888888887665  7777775421     111111   122344443322 55554


Q ss_pred             ccch--hhhhcc---CCCCc-cccCCHHHHHHHHHhhhhc
Q 019701          302 DSFR--PILHHY---DGPKF-RLELNVPEAISLLDIFEEQ  335 (337)
Q Consensus       302 seFK--piI~~Y---~~~KF-~fELs~~QV~~Ll~LF~~~  335 (337)
                      ++.|  +.++..   ..+.- -..+|.+|-..+++|=..+
T Consensus       116 ~eLK~~~~L~~m~Llr~~RLSV~PVt~~ew~~I~~L~~~~  155 (157)
T d2ar1a1         116 HELKSRRELQKMALFTQRRLSVQPVSASEYAYILRMNEEQ  155 (157)
T ss_dssp             HHHTTCGGGTTCHHHHCSSCSEEEECHHHHHHHHHHHHHH
T ss_pred             HHHhcCcccccCcEeecCccceeecCHHHHHHHHHHhccc
Confidence            4444  334321   12333 3489999999888875443