Citrus Sinensis ID: 019720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMARNRPAARAGAPSFLIRTAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccEEEEccccccccccccccccccccEEEcccccccccEEEccccccccccHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEEEEHHHHHHEEHHEEHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccEEEcccccccccccccccccccEEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mntrysfpsdslcnssttvpysssppatedrmarnrpaaragapsFLIRTAMRISRARWFNFLRRVFHyqngsrsdlgsnpfnsstWMTLELLALLVQISIITFTLSiskkespiwpmrIWIVGYDIGCLLSLLLLYGRYRQLYasqvdgfslpdveqqrssedsrFSHLMNKCRTSLELFFAIWFVMGNVWvfdsrfgsfqrapnLHVLCISLLAWNALSYSFPFLLFLLLCCCvplissvlgynmnmgaadkgasddqisrlpswrykrvdsnleagnsapanedpecCICLAKykekeevrklpcshmfhlKCVDQWLRIlsccplckqeler
Flexible Loop (DISEMBL)
mntrysfpsdslcnssttvpysssppatedrmarnrpaaragapsflIRTAMRISRARWFNFLRRVFHYQngsrsdlgsnPFNSSTWMTLELLALLVQISIITFTlsiskkespiWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAadkgasddqiSRLPSWRYKRVDSNleagnsapanedpeCCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER
Low Complexity Region (SEG)
MNTRYSFPSDSLCNssttvpysssppatEDrmarnrpaaragaPSFLIRTAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCllsllllYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSfpfllflllcccvplISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER
Disordered region (IsUnstruct)
********************************************SFLIRTAMRISRARWFNFLRRVFHYQNGS***LG*NPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFS****************HLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMG**************************************ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK*****
Disordered Region (DISOPRED)
*********************************************************************************FNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQ***************************LMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVL*****************ISRLPSWRYK****************DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE*
Disordered Region (DISEMBL)
****************************************AGAPSFLIRTAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLP*************SHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAA********ISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER
Disordered Region (DISPRO)
*****SFPSDSLCNSSTTVPY****************************************************RSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYA********************RFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRV************NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQ****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMARNRPAARAGAPSFLIRTAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.708	0.610	0.297	5e-27
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.696	0.651	0.282	2e-26
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.651	0.574	0.28	5e-25
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.693	0.571	0.272	1e-24
E9QAU8	347	RING finger protein 165 O	yes	no	0.369	0.357	0.299	3e-12
Q66HG0	380	E3 ubiquitin-protein liga	no	no	0.342	0.302	0.302	7e-12
Q6ZSG1	346	RING finger protein 165 O	yes	no	0.369	0.358	0.291	8e-12
O54965	381	E3 ubiquitin-protein liga	no	no	0.342	0.301	0.294	9e-12
Q90972	381	E3 ubiquitin-protein liga	yes	no	0.342	0.301	0.310	2e-11
Q0VD51	380	E3 ubiquitin-protein liga	yes	no	0.342	0.302	0.294	3e-11

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 133/272 (48%), Gaps = 34/272 (12%)

Query: 90  LELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQL----YA 145
           L++L  L  ++I    L +S+ E P  P+R+W+VGY I C L +  +   YR+     + 
Sbjct: 112 LDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHP 171

Query: 146 SQVDGFSLPDVEQQRS------SEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFG 199
               G  L +   Q+        +    S+      ++  +F  IW+++G  WV      
Sbjct: 172 EDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYWVSAGGQT 231

Query: 200 SFQRAPNLHVLCISLLAWNALSY----SFPFLLFLLLCCCVPLISSVLGYNMNMGAADKG 255
               +P L+ LCI  L ++        +   ++ L +CCC+P I ++L Y +   A  +G
Sbjct: 232 LSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAIL-YAV---ADQEG 287

Query: 256 ASDDQISRLPSWRYKRVDS-----------NLEAGNSAPAN-----EDPECCICLAKYKE 299
           AS + I ++P +R+ +  +             E G  +P       ED ECCICL +Y++
Sbjct: 288 ASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEYED 347

Query: 300 KEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
             E+R+LPC+H FH  C+D+WL I S CPLCK
Sbjct: 348 GVELRELPCNHHFHCTCIDKWLHINSRCPLCK 379

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 39/273 (14%)

Query: 94  ALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRY---------RQLY 144
           A LV  S +    ++  +E P  P+R+WI  Y + CL  ++L++  Y         R L 
Sbjct: 86  AALVLASAVMLVGTV--EERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLE 143

Query: 145 ASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRA 204
           +   + +++    +Q S ++S     + +C +   +   IW+++G  WV +        A
Sbjct: 144 SYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEA 203

Query: 205 PNLHVLCISLLAWNALSYSFPFLLFLL----LCCCVPLISSVLGYNMNMGAADKGASDDQ 260
           PNL+ L +  LA +     F  +L  L    LCCC+P I ++L Y +   A  +G S+ +
Sbjct: 204 PNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALL-YAV---AGTEGVSEAE 259

Query: 261 ISRLPSWRYKRVDSNLEAGNSAPAN-------------------EDPECCICLAKYKEKE 301
           +  LP +++K   SN E   + P                     ED +CCICL+ Y++  
Sbjct: 260 LGVLPLYKFKAFHSN-EKNITGPGKMVPIPINGLCLATERTLLAEDADCCICLSSYEDGA 318

Query: 302 EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           E+  LPC+H FH  C+ +WL++ + CPLCK  +
Sbjct: 319 ELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 56/275 (20%)

Query: 109 SKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYA---------------------SQ 147
           S  E+P  P+R+WI+GY + C++ ++ +   YR+  +                      +
Sbjct: 96  SSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDE 155

Query: 148 VDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLE----LFFAIWFVMGNVWVFDSRFGSFQR 203
            +G  L     +R  E  +  +  N     LE    +   IW+V+G  WV        Q 
Sbjct: 156 EEGLGLSRNSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQG 215

Query: 204 APNLHVLCI----SLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGASDD 259
           +P L+ LCI      + +     +   ++ + +CCC+P I +VL Y +   A  +GAS +
Sbjct: 216 SPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVL-YAV---AEQEGASKE 271

Query: 260 QISRLPSWRYKRVDSNL------------------EAGNSAPA-----NEDPECCICLAK 296
            I +L  +++++V   +                  E G  +P      +ED ECCICL+ 
Sbjct: 272 DIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCICLSA 331

Query: 297 YKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
           Y+++ E+R+LPC H FH  CVD+WL I + CPLCK
Sbjct: 332 YEDETELRELPCGHHFHCGCVDKWLYINATCPLCK 366

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 142/305 (46%), Gaps = 72/305 (23%)

Query: 88  MTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYA-- 145
           + L+++  L  +S+ T  L +S+KE PI P+R+W++GY + C+L ++ +   YR+     
Sbjct: 101 VVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRR 160

Query: 146 ----------------------------------SQVDGFSLPDVEQQRSSEDSRFSHLM 171
                                             S V   SL  ++ + SS       + 
Sbjct: 161 TNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSS-------VA 213

Query: 172 NKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSY----SFPFL 227
               ++  +F  IW+++G  WV        Q +P ++ L I  L ++        +   +
Sbjct: 214 KHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACV 273

Query: 228 LFLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRV-DSN----------- 275
           + + +CCC+P I +VL Y +   A  +GAS + I +L  ++++++ D+N           
Sbjct: 274 IGIAVCCCLPCIIAVL-YAV---ADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTT 329

Query: 276 ----LEAGNSAPA-----NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSC 326
                E G  +P       ED ECCICL+ Y++  E+R+LPC H FH  CVD+WL I + 
Sbjct: 330 EGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINAT 389

Query: 327 CPLCK 331
           CPLCK
Sbjct: 390 CPLCK 394

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 212 ISLLAWNALSYSFPFLLFLLLCCCVPL---------ISSVLGYNMNMGAADKGASDDQIS 262
             ++     +Y +P L FL L    P             +L     +G   +GA  + I 
Sbjct: 204 TQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRGAVQNTIE 263

Query: 263 RLP-SWRYKR---VDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVD 318
           R     +YK+    DS  +      ++ D +C ICL+  ++ E+VR+LPC H+FH  CVD
Sbjct: 264 RFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVD 323

Query: 319 QWLRILSCCPLCKQELE 335
           QWL +   CP+C+ ++E
Sbjct: 324 QWLAMSKKCPICRVDIE 340

Mus musculus (taxid: 10090)

>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 208 HVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGAS-DDQISRLPS 266
           HV+ +  L+     Y  PFL+ + +C  + +I  +  +  +     +     DQ+ +LP 
Sbjct: 169 HVILVPELSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPV 228

Query: 267 WRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILS 325
            ++K+ D            E   C ICL +Y++ +++R LPCSH +H KCVD WL +   
Sbjct: 229 HKFKKGD------------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 326 CCPLCKQEL 334
            CP+CKQ++
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 13/137 (9%)

Query: 212 ISLLAWNALSYSFPFLLFLLLCCCVPL---------ISSVLGYNMNMGAADKGASDDQIS 262
             ++     +Y +P L FL L    P             +L     +G   +GA  + I 
Sbjct: 203 TQMVVHEIRNYPYPQLHFLALQGLNPSRHTSAVRESYEELLQLEDRLGNVTRGAVQNTIE 262

Query: 263 RLP-SWRYKR---VDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVD 318
           R     +YK+    D   +      ++ D +C ICL+  ++ E+VR+LPC H+FH  CVD
Sbjct: 263 RFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVD 322

Query: 319 QWLRILSCCPLCKQELE 335
           QWL +   CP+C+ ++E
Sbjct: 323 QWLAMSKKCPICRVDIE 339

Homo sapiens (taxid: 9606)

>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 208 HVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGAS-DDQISRLPS 266
           H++ +  L+     Y  PFL+ + +C  + +I  +  +  +     +     DQ+ +LP 
Sbjct: 169 HIILVPELSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPV 228

Query: 267 WRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILS 325
            ++K+ D            E   C ICL +Y++ +++R LPCSH +H KCVD WL +   
Sbjct: 229 HKFKKGD------------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 326 CCPLCKQEL 334
            CP+CKQ++
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 208 HVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGAS-DDQISRLPS 266
           HV+ I   +     Y  PFL+ + +C  + +I  +  +  +   A +     DQ+ +LP 
Sbjct: 169 HVVLIPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPV 228

Query: 267 WRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILS 325
            ++K+ D            E   C ICL +Y++ +++R LPCSH +H KCVD WL +   
Sbjct: 229 HKFKKGD------------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 326 CCPLCKQEL 334
            CP+CKQ++
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase. May play a role in controlling cell proliferation, including that of muscle cells.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 208 HVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGAS-DDQISRLPS 266
           H++ +   +     Y  PFL+ + +C  + +I  +  +  +   A +     DQ+ +LP 
Sbjct: 169 HIILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPV 228

Query: 267 WRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILS 325
            ++K+ D            E   C ICL +Y++ +++R LPCSH +H KCVD WL +   
Sbjct: 229 HKFKKGD------------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 326 CCPLCKQEL 334
            CP+CKQ++
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
296089966	343	unnamed protein product [Vitis vinifera]	0.997	0.976	0.779	1e-156
147819085	343	hypothetical protein VITISV_016708 [Viti	0.997	0.976	0.776	1e-156
359494331	312	PREDICTED: E3 ubiquitin-protein ligase A	0.901	0.971	0.792	1e-144
224056493	341	predicted protein [Populus trichocarpa]	0.982	0.967	0.749	1e-134
255563598	323	ring finger protein, putative [Ricinus c	0.946	0.984	0.741	1e-131
297793071	343	zinc finger family protein [Arabidopsis	1.0	0.979	0.690	1e-128
255635776	365	unknown [Glycine max]	0.851	0.783	0.735	1e-126
18423810	343	RING/U-box domain-containing protein [Ar	0.997	0.976	0.694	1e-125
4938496	464	putative protein [Arabidopsis thaliana]	0.985	0.713	0.693	1e-123
224114523	293	predicted protein [Populus trichocarpa]	0.848	0.972	0.795	1e-123

>gi|296089966|emb|CBI39785.3| unnamed protein product [Vitis vinifera]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 268/344 (77%), Positives = 304/344 (88%), Gaps = 9/344 (2%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMA---RNRPAARAGAPSFLIRTAMRISRA 57
           MNTRY FP DSLCNS  +V +SS  PA EDRMA   RNR ++RA   SFLIRTAMRISRA
Sbjct: 1   MNTRYFFPPDSLCNSGISVSFSSLSPAGEDRMAAGVRNR-SSRAPPSSFLIRTAMRISRA 59

Query: 58  RWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWP 117
           RWF+FLRRVFHYQNGSRSDLG+NPFNSSTWM LE +AL+VQI +ITFTLS+SK E P+WP
Sbjct: 60  RWFSFLRRVFHYQNGSRSDLGANPFNSSTWMILEFIALVVQIGVITFTLSVSKAERPVWP 119

Query: 118 MRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTS 177
           MRIWIVGYD GC+LSLLLLY RY++ Y++Q DGFSLPD+EQQR++E+SR SHLMNKCRTS
Sbjct: 120 MRIWIVGYDFGCVLSLLLLYWRYQRPYSAQGDGFSLPDIEQQRNNEESRSSHLMNKCRTS 179

Query: 178 LELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVP 237
           LELFFAIWFVMGNVWVFDSRFGSF RAP LHVLCI+LLAWNA+SYSFPFLLF+LLCCCVP
Sbjct: 180 LELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCITLLAWNAISYSFPFLLFVLLCCCVP 239

Query: 238 LISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPAN-----EDPECCI 292
           L+S++LGYNMNMG+ DKGASDDQISRLPSWR+K  ++NL+  N A +N     E PECCI
Sbjct: 240 LVSNLLGYNMNMGSVDKGASDDQISRLPSWRFKEANANLDLPNGADSNSPLSSEYPECCI 299

Query: 293 CLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           CLAKY+EKEEVR+LPCSHMFHLKCVDQWLRI+SCCPLCKQE+ER
Sbjct: 300 CLAKYREKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQEIER 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819085|emb|CAN74282.1| hypothetical protein VITISV_016708 [Vitis vinifera]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/344 (77%), Positives = 304/344 (88%), Gaps = 9/344 (2%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMA---RNRPAARAGAPSFLIRTAMRISRA 57
           MNTRY FP DSLCNS  +V +SS  PA EDRMA   RNR ++RA   SFLIRTAMRISRA
Sbjct: 1   MNTRYFFPPDSLCNSGISVSFSSLSPAGEDRMAAGVRNR-SSRAPPSSFLIRTAMRISRA 59

Query: 58  RWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWP 117
           RWF+FLRRVFHYQNGSRSDLG+NPFNS+TWM LE +AL+VQI +ITFTLS+SK E P+WP
Sbjct: 60  RWFSFLRRVFHYQNGSRSDLGANPFNSNTWMILEFIALVVQIGVITFTLSVSKAERPVWP 119

Query: 118 MRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTS 177
           MRIWIVGYD GC+LSLLLLY RY++ Y++Q DGFSLPD+EQQR++E+SR SHLMNKCRTS
Sbjct: 120 MRIWIVGYDFGCVLSLLLLYWRYQRPYSAQGDGFSLPDIEQQRNNEESRSSHLMNKCRTS 179

Query: 178 LELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVP 237
           LELFFAIWFVMGNVWVFDSRFGSF RAP LHVLCI+LLAWNA+SYSFPFLLF+LLCCCVP
Sbjct: 180 LELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCITLLAWNAISYSFPFLLFVLLCCCVP 239

Query: 238 LISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPAN-----EDPECCI 292
           L+S++LGYNMNMG+ DKGASDDQISRLPSWR+K  ++NL+  N A +N     E PECCI
Sbjct: 240 LVSNLLGYNMNMGSVDKGASDDQISRLPSWRFKEANANLDLPNGADSNSPLSSEYPECCI 299

Query: 293 CLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           CLAKY+EKEEVR+LPCSHMFHLKCVDQWLRI+SCCPLCKQE+ER
Sbjct: 300 CLAKYREKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQEIER 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494331|ref|XP_002267586.2| PREDICTED: E3 ubiquitin-protein ligase At4g11680 [Vitis vinifera]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/309 (79%), Positives = 279/309 (90%), Gaps = 6/309 (1%)

Query: 33  ARNRPAARAGAPSFLIRTAMRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLEL 92
            RNR ++RA   SFLIRTAMRISRARWF+FLRRVFHYQNGSRSDLG+NPFNSSTWM LE 
Sbjct: 5   VRNR-SSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANPFNSSTWMILEF 63

Query: 93  LALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFS 152
           +AL+VQI +ITFTLS+SK E P+WPMRIWIVGYD GC+LSLLLLY RY++ Y++Q DGFS
Sbjct: 64  IALVVQIGVITFTLSVSKAERPVWPMRIWIVGYDFGCVLSLLLLYWRYQRPYSAQGDGFS 123

Query: 153 LPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCI 212
           LPD+EQQR++E+SR SHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSF RAP LHVLCI
Sbjct: 124 LPDIEQQRNNEESRSSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCI 183

Query: 213 SLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRV 272
           +LLAWNA+SYSFPFLLF+LLCCCVPL+S++LGYNMNMG+ DKGASDDQISRLPSWR+K  
Sbjct: 184 TLLAWNAISYSFPFLLFVLLCCCVPLVSNLLGYNMNMGSVDKGASDDQISRLPSWRFKEA 243

Query: 273 DSNLEAGNSAPAN-----EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCC 327
           ++NL+  N A +N     E PECCICLAKY+EKEEVR+LPCSHMFHLKCVDQWLRI+SCC
Sbjct: 244 NANLDLPNGADSNSPLSSEYPECCICLAKYREKEEVRQLPCSHMFHLKCVDQWLRIISCC 303

Query: 328 PLCKQELER 336
           PLCKQE+ER
Sbjct: 304 PLCKQEIER 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056493|ref|XP_002298883.1| predicted protein [Populus trichocarpa] gi|222846141|gb|EEE83688.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/347 (74%), Positives = 289/347 (83%), Gaps = 17/347 (4%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMA---RNRPAARAGAPSFLIRTAMRISRA 57
           MNTRY FP +S C SS   P +S  PA E+      RNR +AR    S L+RTAMRISRA
Sbjct: 1   MNTRYPFPMNSFCGSS---PVAS--PAGEEHGTVSLRNR-SARTPTSSLLVRTAMRISRA 54

Query: 58  RWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWP 117
           RWF FLRRVFHYQNGSRS+LGSNPFNSS WM LE +AL++QISI  FTL+ISK E P+WP
Sbjct: 55  RWFTFLRRVFHYQNGSRSNLGSNPFNSSPWMMLEFVALVIQISITMFTLAISKAEKPVWP 114

Query: 118 MRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDS---RFSHLMNKC 174
           +RIWI+GY+IGC+LSLLLLYGRYRQ+  +Q DGF LPD+EQQR SE+S   R S LM+KC
Sbjct: 115 VRIWIIGYNIGCVLSLLLLYGRYRQINTTQADGFGLPDLEQQRGSEESSVCRCSILMHKC 174

Query: 175 RTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCC 234
           RTSLELFFAIWFVMGNVWVFDSRFGS+ RAP LHVLCISLLAWNALSYSFPFLLFLLLCC
Sbjct: 175 RTSLELFFAIWFVMGNVWVFDSRFGSYHRAPKLHVLCISLLAWNALSYSFPFLLFLLLCC 234

Query: 235 CVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPAN-----EDPE 289
           CVPLIS+VLGYNMNMG+A++GASDDQIS LPSWRYK  D+N E  N+A  N     ED E
Sbjct: 235 CVPLISTVLGYNMNMGSAERGASDDQISSLPSWRYKAADTNSEFRNNADCNSTIASEDLE 294

Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           CCICLAKYK+KEEVRKLPCSHMFHLKCVDQWLRI+SCCPLCKQ LER
Sbjct: 295 CCICLAKYKDKEEVRKLPCSHMFHLKCVDQWLRIISCCPLCKQGLER 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563598|ref|XP_002522801.1| ring finger protein, putative [Ricinus communis] gi|223538039|gb|EEF39652.1| ring finger protein, putative [Ricinus communis]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/341 (74%), Positives = 276/341 (80%), Gaps = 23/341 (6%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMARNRPAARAGAPSFLIRTAMRISRARWF 60
           MNTRY    DS CNS T V +SS+    E+R          G  S   R+ +        
Sbjct: 1   MNTRYFSTPDSFCNSGTAVSFSSNSAVGENR----------GPVSIRTRSXVP------- 43

Query: 61  NFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRI 120
            FLRRVFHYQNGSRS+LGSNPFNSSTWM LE +ALLVQIS+ TFTL ISK E PIWPMRI
Sbjct: 44  -FLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALLVQISMTTFTLVISKMEKPIWPMRI 102

Query: 121 WIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLEL 180
           WIVGYDIGCLLSLLL+YGRYRQ++  Q D F L D+EQQR SEDSR +HLMNKCRTSLEL
Sbjct: 103 WIVGYDIGCLLSLLLVYGRYRQVHVVQGDSFGLSDLEQQRGSEDSRCTHLMNKCRTSLEL 162

Query: 181 FFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLIS 240
           FFAIWFVMGNVWVFDSRFGSF RAP LHVLCISLLAWNALSYSFPFLLFLLLCCCVPLIS
Sbjct: 163 FFAIWFVMGNVWVFDSRFGSFNRAPKLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLIS 222

Query: 241 SVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGN-----SAPANEDPECCICLA 295
           SVLGYNM MG+A++GASDDQISRLPSW+YK VD+N E  +     S  AN+DPECCICLA
Sbjct: 223 SVLGYNMQMGSAERGASDDQISRLPSWKYKAVDTNSEVASNIDCTSTLANDDPECCICLA 282

Query: 296 KYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           KYK+KEEVR+LPCSHMFHLKCVDQWLRI+SCCPLCKQELER
Sbjct: 283 KYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQELER 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793071|ref|XP_002864420.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297310255|gb|EFH40679.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/343 (69%), Positives = 277/343 (80%), Gaps = 7/343 (2%)

Query: 1   MNTRYSFPSD----SLCNSSTTVPYSSSPPATEDRMARNRPAARAGAPSFLIRTAMRISR 56
           MNTRYS   +    ++  + ++    SS P  E+  A +  A      SF IR AM++SR
Sbjct: 1   MNTRYSVQPELSSNNISITISSSASLSSSPRGENSHAADGNAQERSPSSFYIRLAMKVSR 60

Query: 57  ARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIW 116
           ARWF FLRRVFHYQNGSRSDLGSNPFNSSTWM  EL+ALLVQ+++ITFTL+ISK+E PIW
Sbjct: 61  ARWFIFLRRVFHYQNGSRSDLGSNPFNSSTWMMSELIALLVQLTVITFTLAISKEERPIW 120

Query: 117 PMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQ-RSSEDSRFSHLMNKCR 175
           P+R+WI GYD+GCLL+L+LLYGRYRQL   Q +GF L DVEQQ R  E++R SHLMNKCR
Sbjct: 121 PVRLWITGYDVGCLLNLMLLYGRYRQLDVYQGNGFVLGDVEQQQRGREETRSSHLMNKCR 180

Query: 176 TSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCC 235
           TSLELFFAIWFV+GNVWVFDSRFGSF  AP LHVLC+SLL+WNA+ YSFPFLLFL LCC 
Sbjct: 181 TSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLSWNAICYSFPFLLFLFLCCL 240

Query: 236 VPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNL--EAGNSAPANEDPECCIC 293
           VPLISS+LGYNMNMG++D+ ASDDQIS LPSW++KR+D N      +SA A +DPECCIC
Sbjct: 241 VPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFKRIDENASDSDSDSATATDDPECCIC 300

Query: 294 LAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           LAKYK+KEEVRKLPC H FH KCVDQWLRI+SCCPLCKQ+L R
Sbjct: 301 LAKYKDKEEVRKLPCQHKFHSKCVDQWLRIISCCPLCKQDLPR 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635776|gb|ACU18237.1| unknown [Glycine max]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/295 (73%), Positives = 254/295 (86%), Gaps = 9/295 (3%)

Query: 17  TTVPYSSSPPATEDRMA--RNRPAARAGAPSFLIRTAMRISRARWFNFLRRVFHYQNGSR 74
           + VP+SS+  ATEDR+A  RNRP  R   PSFL+R AMRISRARWF FLRRVFHYQNGSR
Sbjct: 15  SMVPFSSNS-ATEDRVASARNRPP-RVTPPSFLVRIAMRISRARWFTFLRRVFHYQNGSR 72

Query: 75  SDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRIWIVGYDIGCLLSLL 134
           S+LGSNPFNSSTWM LE +AL++QI+I TFTL+ISK+E PIWPMRIW+ GYDIGC+L+LL
Sbjct: 73  SNLGSNPFNSSTWMMLEFIALILQITITTFTLAISKRERPIWPMRIWVSGYDIGCVLNLL 132

Query: 135 LLYGRYRQLYASQVDGFSLPDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVF 194
           LLYGRYRQ+Y +Q D  SL D+EQQR++E++R SHLMNKCRTSLELFFAIWFVMGNVWVF
Sbjct: 133 LLYGRYRQIYLTQGDSLSLSDIEQQRNNEETRMSHLMNKCRTSLELFFAIWFVMGNVWVF 192

Query: 195 DSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPLISSVLGYNMNMGAADK 254
           DSRFGSF  AP LHVLCI LLAWNA+ YSFPFLLF+LLCCCVPLIS++LGYNMNM +++K
Sbjct: 193 DSRFGSFHHAPKLHVLCIILLAWNAMCYSFPFLLFVLLCCCVPLISTLLGYNMNMASSNK 252

Query: 255 GASDDQISRLPSWRYKRVDSNLEAGNSAPA-----NEDPECCICLAKYKEKEEVR 304
           GAS+DQIS+LPSWR+K   + LE GN++       NEDPECCICLAKYK++EEVR
Sbjct: 253 GASNDQISQLPSWRHKEAGAKLELGNASEGSEKLINEDPECCICLAKYKDEEEVR 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423810|ref|NP_568834.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|30696669|ref|NP_851197.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|21553392|gb|AAM62485.1| unknown [Arabidopsis thaliana] gi|332009321|gb|AED96704.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|332009322|gb|AED96705.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/344 (69%), Positives = 278/344 (80%), Gaps = 9/344 (2%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMARNRPAARAGAP-----SFLIRTAMRIS 55
           MNTRYS   + L +S+ T+  SSS   +      N   A A        SF IR AM++S
Sbjct: 1   MNTRYSNQPE-LSSSNITITISSSALLSSSPRGDNSHVAAANGQERSPSSFYIRLAMKVS 59

Query: 56  RARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPI 115
           RARWF FLRRVFHYQNGSRSDLGSNPFNSSTWM  EL+ALLVQ+++ITFTL+ISK+E PI
Sbjct: 60  RARWFIFLRRVFHYQNGSRSDLGSNPFNSSTWMMSELIALLVQLTVITFTLAISKEERPI 119

Query: 116 WPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQ-RSSEDSRFSHLMNKC 174
           WP+R+WI GYD+GCLL+L+LLYGRYRQL  +Q +GF L DVEQQ R  E++R SHLMNKC
Sbjct: 120 WPVRLWITGYDVGCLLNLMLLYGRYRQLDINQGNGFVLGDVEQQQRGREETRSSHLMNKC 179

Query: 175 RTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCC 234
           RTSLELFFAIWFV+GNVWVFDSRFGSF  AP LHVLC+SLLAWNA+ YSFPFLLFL LCC
Sbjct: 180 RTSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAWNAICYSFPFLLFLFLCC 239

Query: 235 CVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRV--DSNLEAGNSAPANEDPECCI 292
            VPLISS+LGYNMNMG++D+ ASDDQIS LPSW++KR+   ++    +SA   +DPECCI
Sbjct: 240 LVPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFKRIDDSASDSDSDSATVTDDPECCI 299

Query: 293 CLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           CLAKYK+KEEVRKLPCSH FH KCVDQWLRI+SCCPLCKQ+L R
Sbjct: 300 CLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDLPR 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4938496|emb|CAB43854.1| putative protein [Arabidopsis thaliana] gi|7269510|emb|CAB79513.1| putative protein [Arabidopsis thaliana]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/336 (69%), Positives = 271/336 (80%), Gaps = 5/336 (1%)

Query: 1   MNTRYSFPSDSLCNSSTTVPYSSSPPATEDRMARNRPAARAGAPSFLIRTAMRISRARWF 60
           M+TRYS    S   +S TV  SSS  +T+     +     + + SF +R AMR+SRARWF
Sbjct: 130 MSTRYSSQLQSSAINSITVSSSSSFASTQLDDNTHTAPESSPSSSFFMRLAMRVSRARWF 189

Query: 61  NFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRI 120
            FLRRVFHYQN SRSDLG+NPFNS  WM  EL+ALL+QI++IT TL++SK E P+WPMR+
Sbjct: 190 IFLRRVFHYQNASRSDLGTNPFNSIAWMVSELIALLLQITVITSTLALSKNERPVWPMRL 249

Query: 121 WIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSS--EDSRFSHLMNKCRTSL 178
           WI GY++GCLL+L+LLYGRYRQ   S  + FS  D+EQQ+ S  E +R SHLMNKCRTSL
Sbjct: 250 WITGYNVGCLLNLMLLYGRYRQQDTSHENAFSFGDIEQQQRSREETTRCSHLMNKCRTSL 309

Query: 179 ELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFLLLCCCVPL 238
           ELFFAIWFV+GNVWVFDSRFGSF  AP LHVLCISLLAWNAL YSFPFLLFLLLCC VPL
Sbjct: 310 ELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISLLAWNALCYSFPFLLFLLLCCVVPL 369

Query: 239 ISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYK 298
           +SS LGYNMN+G+++KGASDDQIS LPSW+YK +D   E  +S+ AN DPECCICLAKYK
Sbjct: 370 VSSFLGYNMNVGSSEKGASDDQISSLPSWKYKLID---ETSDSSQANNDPECCICLAKYK 426

Query: 299 EKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           EKEEVRKLPCSH FHLKCVDQWLRI+SCCPLCKQ+L
Sbjct: 427 EKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114523|ref|XP_002316784.1| predicted protein [Populus trichocarpa] gi|222859849|gb|EEE97396.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/293 (79%), Positives = 262/293 (89%), Gaps = 8/293 (2%)

Query: 52  MRISRARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKK 111
           MRISRARWF FLRRVFHYQNGS S+LGSNPFNSS+WM LE +ALL+QI I TFTL+ISK 
Sbjct: 1   MRISRARWFTFLRRVFHYQNGSSSNLGSNPFNSSSWMMLEFVALLLQICITTFTLAISKA 60

Query: 112 ESPIWPMRIWIVGYDIGCLLSLLLLYGRYRQLYASQVDGFSLPDVEQQRSSEDS---RFS 168
           E+P+WP+RIWI+GY+IGC+LSLLLLYGRYRQL A+Q DGF LPD+EQQ  SE+S   R+S
Sbjct: 61  ENPVWPVRIWIIGYNIGCVLSLLLLYGRYRQLNATQGDGFGLPDLEQQGGSEESSVCRYS 120

Query: 169 HLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLL 228
           HLMNKCRTSLELFFAIWFVMGNVWVFDSRFGS+ RAP LHVLCISLLAWNALSYSFPFLL
Sbjct: 121 HLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSYFRAPKLHVLCISLLAWNALSYSFPFLL 180

Query: 229 FLLLCCCVPLISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAP----- 283
           FLLLCCCVPLIS+V+GYNM+MG+A++GASDDQISRLPS RYK VD++ E  NS       
Sbjct: 181 FLLLCCCVPLISTVIGYNMSMGSAERGASDDQISRLPSRRYKAVDTDSEFRNSVDCDSTV 240

Query: 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           A+ED ECCICLAKYK+ EEVR+LPCSHMFHLKCVDQWLRI+SCCPLCKQELE+
Sbjct: 241 ASEDLECCICLAKYKDIEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQELEK 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	1.0	0.979	0.635	8.2e-115
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.985	0.988	0.616	3.8e-110
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.5	0.370	0.372	2.2e-40
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.532	0.439	0.352	5.8e-40
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.172	0.142	0.492	1.6e-21
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.172	0.152	0.492	2.2e-21
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.139	0.124	0.595	1.4e-19
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.136	0.134	0.5	2.8e-17
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.145	0.136	0.469	9.5e-17
TAIR|locus:2011686	185	ATL8 [Arabidopsis thaliana (ta	0.232	0.421	0.379	4.9e-13

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 218/343 (63%), Positives = 249/343 (72%)

Query:     1 MNTRYSF-PSDSLCNXXXXXXXXXXXXXXE--DXXXXXXXXXXXXXPS-FLIRTAMRISR 56
             MNTRYS  P  S  N                 D             PS F IR AM++SR
Sbjct:     1 MNTRYSNQPELSSSNITITISSSALLSSSPRGDNSHVAAANGQERSPSSFYIRLAMKVSR 60

Query:    57 ARWFNFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIW 116
             ARWF FLRRVFHYQNGSRSDLGSNPFNSSTWM  EL+ALLVQ+++ITFTL+ISK+E PIW
Sbjct:    61 ARWFIFLRRVFHYQNGSRSDLGSNPFNSSTWMMSELIALLVQLTVITFTLAISKEERPIW 120

Query:   117 PMRIWIVGYDIGCXXXXXXXYGRYRQLYASQVDGFSLPDVEQQ-RSSEDSRFSHLMNKCR 175
             P+R+WI GYD+GC       YGRYRQL  +Q +GF L DVEQQ R  E++R SHLMNKCR
Sbjct:   121 PVRLWITGYDVGCLLNLMLLYGRYRQLDINQGNGFVLGDVEQQQRGREETRSSHLMNKCR 180

Query:   176 TSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSXXXXXXXXXXXX 235
             TSLELFFAIWFV+GNVWVFDSRFGSF  AP LHVLC+SLLAWNA+ YS            
Sbjct:   181 TSLELFFAIWFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAWNAICYSFPFLLFLFLCCL 240

Query:   236 XXXISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNS--APANEDPECCIC 293
                ISS+LGYNMNMG++D+ ASDDQIS LPSW++KR+D +    +S  A   +DPECCIC
Sbjct:   241 VPLISSLLGYNMNMGSSDRAASDDQISSLPSWKFKRIDDSASDSDSDSATVTDDPECCIC 300

Query:   294 LAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
             LAKYK+KEEVRKLPCSH FH KCVDQWLRI+SCCPLCKQ+L R
Sbjct:   301 LAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDLPR 343

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 207/336 (61%), Positives = 238/336 (70%)

Query:     1 MNTRYSFPSDSLCNXXXXXXXXXXXXXXEDXXXXXXXXXXXXXPSFLIRTAMRISRARWF 60
             M+TRYS    S                 +               SF +R AMR+SRARWF
Sbjct:     1 MSTRYSSQLQSSAINSITVSSSSSFASTQLDDNTHTAPESSPSSSFFMRLAMRVSRARWF 60

Query:    61 NFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELLALLVQISIITFTLSISKKESPIWPMRI 120
              FLRRVFHYQN SRSDLG+NPFNS  WM  EL+ALL+QI++IT TL++SK E P+WPMR+
Sbjct:    61 IFLRRVFHYQNASRSDLGTNPFNSIAWMVSELIALLLQITVITSTLALSKNERPVWPMRL 120

Query:   121 WIVGYDIGCXXXXXXXYGRYRQLYASQVDGFSLPDVEQQRSS--EDSRFSHLMNKCRTSL 178
             WI GY++GC       YGRYRQ   S  + FS  D+EQQ+ S  E +R SHLMNKCRTSL
Sbjct:   121 WITGYNVGCLLNLMLLYGRYRQQDTSHENAFSFGDIEQQQRSREETTRCSHLMNKCRTSL 180

Query:   179 ELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSXXXXXXXXXXXXXXX 238
             ELFFAIWFV+GNVWVFDSRFGSF  AP LHVLCISLLAWNAL YS               
Sbjct:   181 ELFFAIWFVIGNVWVFDSRFGSFHYAPILHVLCISLLAWNALCYSFPFLLFLLLCCVVPL 240

Query:   239 ISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYK 298
             +SS LGYNMN+G+++KGASDDQIS LPSW+YK +D   E  +S+ AN DPECCICLAKYK
Sbjct:   241 VSSFLGYNMNVGSSEKGASDDQISSLPSWKYKLID---ETSDSSQANNDPECCICLAKYK 297

Query:   299 EKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
             EKEEVRKLPCSH FHLKCVDQWLRI+SCCPLCKQ+L
Sbjct:   298 EKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 70/188 (37%), Positives = 104/188 (55%)

Query:   165 SRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCISLLAWNALSYSX 224
             +R   ++   + +L+ FFA+WFV+GNVW+F     S   APNL+ LC+  L ++ + Y+ 
Sbjct:   222 ARLKVIVEYFKMALDCFFAVWFVVGNVWIFGGH-SSAAEAPNLYRLCLVFLTFSCIGYAM 280

Query:   225 XXXXXXXXXXXXXXISSVLGYNMNMGAADKGASDDQISRLPSWRYK------RVDSN--- 275
                           I S+LGY  ++    +GA+ + I+ LP+ ++K        D N   
Sbjct:   281 PFILCTTICCCLPCIISILGYREDL-TQPRGATPESINALPTHKFKLKKSRSNGDDNGSS 339

Query:   276 ------LEAGNS---APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSC 326
                   + AG     A + ED  CCICLAKY   EE+R+LPCSH FH +CVD+WL+I + 
Sbjct:   340 TSEGGVVAAGTDNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINAS 399

Query:   327 CPLCKQEL 334
             CPLCK E+
Sbjct:   400 CPLCKSEV 407

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 5.8e-40, Sum P(2) = 5.8e-40
 Identities = 69/196 (35%), Positives = 106/196 (54%)

Query:   154 PDVEQQRSSEDSRFSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPNLHVLCIS 213
             P   Q   S  +R + L++  + +++ FFA+WFV+GNVW+F     S   +P L+ LCI+
Sbjct:   206 PRNNQVGESLRTRLNGLVDHFKMAIDCFFAVWFVVGNVWIFGGH-SSPSDSPKLYRLCIA 264

Query:   214 LLAWNALSYSXXXXXXXXXXXXXXXISSVLGYNMNMGAADKGASDDQISRLPSWRYKRVD 273
              L ++ + Y+               + SVLG+  N     +GA+ + I+ LP +R+K   
Sbjct:   265 FLTFSCIGYAMPFILCATICCCLPCLISVLGFRENFSQT-RGATAEAINALPVYRFKSKS 323

Query:   274 SN-LEAGNSAP--------------ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVD 318
              N LE                    + ED  CCICL +Y + E+VR+LPCSH+FH+ CVD
Sbjct:   324 RNDLEFSEEGEGGFLLLGSQKKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVD 383

Query:   319 QWLRILSCCPLCKQEL 334
             +WL+I + CPLCK E+
Sbjct:   384 KWLKINATCPLCKNEV 399

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
 Identities = 31/63 (49%), Positives = 40/63 (63%)

Query:   277 EAGNSAPAN-----EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
             E G  +P       ED ECCICL+ Y++  E+R+LPC H FH  CVD+WL I + CPLCK
Sbjct:   335 ECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCK 394

Query:   332 QEL 334
               +
Sbjct:   395 YNI 397

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query:   277 EAGNSAPA-----NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
             E G  +P      +ED ECCICL+ Y+++ E+R+LPC H FH  CVD+WL I + CPLCK
Sbjct:   307 ECGTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCK 366

Query:   332 QEL 334
               +
Sbjct:   367 YNI 369

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query:   285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
             +ED EC ICL  Y++  E+R+LPC H FH  CVD+WLRI + CPLCK
Sbjct:   318 SEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCPLCK 364

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query:   286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
             ED +CCICL+ Y++  E+  LPC+H FH  C+ +WL++ + CPLCK
Sbjct:   288 EDADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCK 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query:   286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
             ED +CCICL+ Y++  E+  LPC+H FH  C+ +WL++ + CPLCK  +
Sbjct:   303 EDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2011686 ATL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
 Identities = 33/87 (37%), Positives = 46/87 (52%)

Query:   249 MGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLP- 307
             + AA+KG     +  LP   Y        + +S PA +  EC ICL ++   +E+R LP 
Sbjct:    71 VAAANKGLKKKVLRSLPKLTY--------SPDSPPAEKLVECAICLTEFAAGDELRVLPQ 122

Query:   308 CSHMFHLKCVDQWLRILSCCPLCKQEL 334
             C H FH+ C+D WL   S CP C+Q L
Sbjct:   123 CGHGFHVSCIDTWLGSHSSCPSCRQIL 149

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	7e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-10
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	6e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-07
smart00184	40	smart00184, RING, Ring finger	8e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-05
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	8e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 70.1 bits (172), Expect = 7e-16
 Identities = 23/46 (50%), Positives = 32/46 (69%)

Query: 288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQE 333
            EC ICL +++  EEV  LPC H+FH +C+D+WLR  + CPLC+  
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQEL 334
           EC ICL +++E   V  LPC H+F   C+D+WL+     CPLC+  +
Sbjct: 1   ECPICLEEFREP--VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQ 332
           E+ EC ICL   ++   V   PC H+F  +C+ ++L+  S CP+C+ 
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQEL 334
           EC IC++ + + + +R LPC H FH+ CVD+WL   S  CP+C+  +
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLC 330
           C ICL +Y +      LPC H F   C+ +WL   +  CP+C
Sbjct: 1   CPICLEEYLKD--PVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 286 EDPECCICL---------AKYKEKE-EVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
           ED  C IC           K    +  V    C H FHL C+ +WL+  + CPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 17/84 (20%)

Query: 267 WRYKRVDSNLE-----AGNSAPANEDPECCIC-----------LAKYKEKEEVRKLPCSH 310
            R++R   +L      A      N D  C IC           L +  +    ++LPC H
Sbjct: 262 ARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTP-KRLPCGH 320

Query: 311 MFHLKCVDQWLRILSCCPLCKQEL 334
           + HL C+  WL     CP+C++ +
Sbjct: 321 ILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLC 330
           C ICL + K+   V  LPC H+F  KC+  WL   +  CPLC
Sbjct: 1   CPICLEEPKD--PVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 286 EDPECCICLAKYKEKEEVRK----LP-CSHMFHLKCVDQWLRILSCCPLCKQE 333
           +D EC IC+ K  +KE        L  C+H+F ++C+D W +  + CP+C+  
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 308 CSHMFHLKCVDQWLRILSCCPLCKQELE 335
           C+H FH  C+ +WL     CPL +Q   
Sbjct: 54  CNHAFHDHCIYRWLDTKGVCPLDRQTWV 81

Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.72
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.55
PHA02929	238	N1R/p28-like protein; Provisional	99.31
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.29
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.29
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	99.2
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.16
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.08
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.03
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.02
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.98
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.9
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.84
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.77
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.76
PF14634	44	zf-RING_5: zinc-RING finger domain	98.75
PHA02926	242	zinc finger-like protein; Provisional	98.72
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.72
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.71
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.7
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.69
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.53
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.5
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.44
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.38
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.34
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.28
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.21
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.16
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.13
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.12
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.07
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.92
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.9
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.72
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.69
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.48
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.38
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.26
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.21
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.16
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.96
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.95
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.9
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.71
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.66
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.57
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.54
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.42
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.42
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.28
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.99
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.96
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.87
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.76
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.71
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.7
COG5152	259	Uncharacterized conserved protein, contains RING a	95.69
KOG2660	331	consensus Locus-specific chromosome binding protei	95.68
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.56
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.47
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.22
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.14
PHA03096	284	p28-like protein; Provisional	94.84
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	94.51
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.23
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.22
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.41
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.15
PF04641	260	Rtf2: Rtf2 RING-finger	93.12
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.66
KOG1940	276	consensus Zn-finger protein [General function pred	92.5
COG5222	427	Uncharacterized conserved protein, contains RING Z	92.32
KOG1609	323	consensus Protein involved in mRNA turnover and st	92.27
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.91
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.64
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.08
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.98
KOG1001	674	consensus Helicase-like transcription factor HLTF/	90.93
PHA02862	156	5L protein; Provisional	89.58
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	88.85
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	88.28
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.31
KOG3002	299	consensus Zn finger protein [General function pred	86.73
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	86.52
COG5175	480	MOT2 Transcriptional repressor [Transcription]	86.41
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	86.33
KOG3053	293	consensus Uncharacterized conserved protein [Funct	85.75
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	85.69
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	85.13
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	84.01
KOG0298	1394	consensus DEAD box-containing helicase-like transc	83.21

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.4e-18  Score=166.14  Aligned_cols=75  Identities=32%  Similarity=0.853  Sum_probs=64.8

Q ss_pred             CCCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCC-cccc
Q 019720          252 ADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSC-CPLC  330 (336)
Q Consensus       252 ~~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~t-CPlC  330 (336)
                      ..+++.++.++++|..+|+...+.         .....|+||||+|++||++|.|||+|.||..|||+||..+.+ ||+|
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~---------~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvC  273 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDE---------DATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVC  273 (348)
T ss_pred             hhhhhHHHHHhhCCcEEecccccc---------CCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCC
Confidence            457889999999999999986621         111589999999999999999999999999999999988754 9999


Q ss_pred             CcCcC
Q 019720          331 KQELE  335 (336)
Q Consensus       331 R~~I~  335 (336)
                      |+++.
T Consensus       274 K~di~  278 (348)
T KOG4628|consen  274 KRDIR  278 (348)
T ss_pred             CCcCC
Confidence            99874

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.55  E-value=1.7e-15  Score=104.93  Aligned_cols=44  Identities=45%  Similarity=1.208  Sum_probs=40.9

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK  331 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR  331 (336)
                      ++|+||++++++++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            37999999999999999999999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.31  E-value=1.3e-12  Score=121.28  Aligned_cols=77  Identities=25%  Similarity=0.545  Sum_probs=56.0

Q ss_pred             CCCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCc----e-EEeCCCCcccHHHHHHHHhcCCC
Q 019720          252 ADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEE----V-RKLPCSHMFHLKCVDQWLRILSC  326 (336)
Q Consensus       252 ~~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~----v-r~LPC~H~FH~~CI~~WL~~~~t  326 (336)
                      ..++.+++.++.+|....+-...       ....++.+|+||++.+.+++.    + ..++|+|.||.+||++|++.+.+
T Consensus       146 ~k~~~~~~~i~~lp~vl~~~e~~-------~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~t  218 (238)
T PHA02929        146 KKGKNYKKFLKTIPSVLSEYEKL-------YNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNT  218 (238)
T ss_pred             HhcchhHHHHHhcchhhhhhhhh-------hcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCC
Confidence            34566777788888764332110       112356799999999877541    2 33469999999999999999999


Q ss_pred             ccccCcCcC
Q 019720          327 CPLCKQELE  335 (336)
Q Consensus       327 CPlCR~~I~  335 (336)
                      ||+||.++.
T Consensus       219 CPlCR~~~~  227 (238)
T PHA02929        219 CPVCRTPFI  227 (238)
T ss_pred             CCCCCCEee
Confidence            999998763

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-12  Score=122.90  Aligned_cols=51  Identities=37%  Similarity=1.056  Sum_probs=46.6

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~  335 (336)
                      ....+|+|||++|..+|++++|||+|.||..|+++|+. -+..||+||.++.
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            34579999999999999999999999999999999997 5788999999875

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.29  E-value=2.2e-12  Score=99.15  Aligned_cols=45  Identities=38%  Similarity=1.019  Sum_probs=36.8

Q ss_pred             CCcccccccccccC----------CceEEeCCCCcccHHHHHHHHhcCCCccccC
Q 019720          287 DPECCICLAKYKEK----------EEVRKLPCSHMFHLKCVDQWLRILSCCPLCK  331 (336)
Q Consensus       287 ~~~C~ICL~~f~~~----------~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR  331 (336)
                      ++.|+||++++.+.          -.+...+|+|.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            44599999999443          3456667999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=4.6e-12  Score=117.56  Aligned_cols=56  Identities=27%  Similarity=0.666  Sum_probs=48.4

Q ss_pred             CCCCCCCCCcccccccccccCC-------ceEEeCCCCcccHHHHHHHH--hcCCCccccCcCcC
Q 019720          280 NSAPANEDPECCICLAKYKEKE-------EVRKLPCSHMFHLKCVDQWL--RILSCCPLCKQELE  335 (336)
Q Consensus       280 ~~~~~~~~~~C~ICL~~f~~~~-------~vr~LPC~H~FH~~CI~~WL--~~~~tCPlCR~~I~  335 (336)
                      -.+...+|..|+||-..+...+       ++..|.|+|+||..||+.|.  .++++||.||..++
T Consensus       217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            3445678899999999988776       78899999999999999994  67899999998775

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.3e-11  Score=119.07  Aligned_cols=55  Identities=31%  Similarity=0.963  Sum_probs=46.6

Q ss_pred             CCCCCCCCCcccccccc-cccCC---------ceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          280 NSAPANEDPECCICLAK-YKEKE---------EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       280 ~~~~~~~~~~C~ICL~~-f~~~~---------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      ++++.++|..|.||+++ ++.+.         +-+.|||||.+|.+|++.|++++++||+||.++
T Consensus       280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            34456889999999999 55442         347899999999999999999999999999984

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.08  E-value=9.6e-11  Score=105.18  Aligned_cols=50  Identities=28%  Similarity=0.787  Sum_probs=42.4

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----------------CCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----------------LSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~----------------~~tCPlCR~~I~  335 (336)
                      ...++.+|+||++.++++   ..++|+|.||..||.+|+..                ...||+||.++.
T Consensus        14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            345678999999999887   67899999999999999852                357999999874

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.03  E-value=1.3e-10  Score=82.62  Aligned_cols=48  Identities=40%  Similarity=0.938  Sum_probs=40.4

Q ss_pred             CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      |+..|.||++...+   ...+||+|. |+.+|+++|++.+..||+||++|++
T Consensus         1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            46789999998555   588999999 9999999999999999999999863

...

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.4e-10  Score=108.86  Aligned_cols=53  Identities=26%  Similarity=0.765  Sum_probs=46.4

Q ss_pred             CCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          280 NSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       280 ~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +....+.+..|.+||+.-+++   ..+||||+||+.||..|+..++.||+||...+
T Consensus       232 ~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  232 LSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             CccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence            334456678999999999888   78999999999999999999999999998764

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.98  E-value=4.4e-10  Score=76.09  Aligned_cols=44  Identities=45%  Similarity=1.176  Sum_probs=37.0

Q ss_pred             cccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCc
Q 019720          289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQEL  334 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I  334 (336)
                      +|+||++.+.  +.+...+|+|.||..|+++|++. +..||.||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            5999999983  34455569999999999999987 78899999864

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.90  E-value=9.5e-10  Score=74.16  Aligned_cols=39  Identities=36%  Similarity=0.967  Sum_probs=33.7

Q ss_pred             ccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCcccc
Q 019720          290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlC  330 (336)
                      |+||++.+.+  .+..++|||.|+.+|+.+|++.+.+||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999887  45688999999999999999999999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2e-09  Score=98.48  Aligned_cols=49  Identities=35%  Similarity=0.746  Sum_probs=42.7

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC---CCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~  335 (336)
                      .....+|.|||+.-+|+   .++.|||.||+.||-+||..+   +.||+||..|.
T Consensus        44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            45678999999998888   778899999999999999873   56999999875

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.84  E-value=2.1e-09  Score=84.41  Aligned_cols=50  Identities=32%  Similarity=0.799  Sum_probs=39.3

Q ss_pred             CCCccccccccccc--------CC--ceEEeCCCCcccHHHHHHHHhc---CCCccccCcCcC
Q 019720          286 EDPECCICLAKYKE--------KE--EVRKLPCSHMFHLKCVDQWLRI---LSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~--------~~--~vr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~I~  335 (336)
                      +|+.|.||...|+.        ||  .+..-.|+|.||..||.+|+..   ++.||+||++.+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            47789999999983        22  2333349999999999999975   578999999753

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.6e-09  Score=109.57  Aligned_cols=52  Identities=35%  Similarity=0.866  Sum_probs=46.5

Q ss_pred             CCCCCCcccccccccccCCc--eEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          283 PANEDPECCICLAKYKEKEE--VRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~--vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      ....+..|.||+++...+++  ...|||+|.||..|+.+|++++++||.||..+
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            44568899999999999765  68899999999999999999999999999843

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.7e-09  Score=92.53  Aligned_cols=50  Identities=30%  Similarity=0.707  Sum_probs=43.2

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++...|+|||+.+.+...+ -+.|||+||++||+.-++....||+|++.|.
T Consensus       129 ~~~~~CPiCl~~~sek~~v-sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPV-STKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             ccccCCCceecchhhcccc-ccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            4458999999999887542 3669999999999999999999999998875

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.75  E-value=6.2e-09  Score=72.09  Aligned_cols=44  Identities=34%  Similarity=0.847  Sum_probs=39.5

Q ss_pred             cccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCc
Q 019720          289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQ  332 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  332 (336)
                      +|.||.++|.+....+.++|+|+|+.+|+++.......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            59999999976777899999999999999999866789999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.72  E-value=6.8e-09  Score=94.65  Aligned_cols=51  Identities=29%  Similarity=0.827  Sum_probs=38.2

Q ss_pred             CCCCcccccccccccCC-----ceEEe-CCCCcccHHHHHHHHhcC------CCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKE-----EVRKL-PCSHMFHLKCVDQWLRIL------SCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~-----~vr~L-PC~H~FH~~CI~~WL~~~------~tCPlCR~~I~  335 (336)
                      .++.+|+||++..-++.     .-..| +|+|.||..||++|.+.+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            45689999999864431     12244 599999999999999753      45999998753

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.72  E-value=7.5e-09  Score=71.19  Aligned_cols=38  Identities=37%  Similarity=0.917  Sum_probs=30.6

Q ss_pred             ccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCcccc
Q 019720          290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlC  330 (336)
                      |+||++.|+++   ..|+|||.|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   889999999999999999764    369988

>smart00504 Ubox Modified RING finger domain

Probab=98.71  E-value=1.4e-08  Score=74.77  Aligned_cols=45  Identities=24%  Similarity=0.435  Sum_probs=41.1

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..|+||.+.++++   ..+||||+|+++||.+|++.+.+||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            4699999999988   67899999999999999998999999998873

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.70  E-value=7.9e-09  Score=70.02  Aligned_cols=39  Identities=41%  Similarity=1.013  Sum_probs=34.7

Q ss_pred             ccccccccccCCceEEeCCCCcccHHHHHHHHh--cCCCcccc
Q 019720          290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR--ILSCCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~--~~~tCPlC  330 (336)
                      |+||++.++++.  ..++|+|.||.+|+++|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988873  5889999999999999998  45789998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.69  E-value=1.4e-08  Score=66.15  Aligned_cols=38  Identities=39%  Similarity=1.078  Sum_probs=32.9

Q ss_pred             ccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCcccc
Q 019720          290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlC  330 (336)
                      |+||++..   +....++|+|.||.+|+++|++ .+..||.|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999883   3458899999999999999998 66789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.53  E-value=5.1e-08  Score=96.88  Aligned_cols=49  Identities=29%  Similarity=0.602  Sum_probs=43.5

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .+....|+||++.|.++   ..+||+|.||..||..|+.....||+||..+.
T Consensus        23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~   71 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ   71 (397)
T ss_pred             cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence            35678999999999887   57899999999999999998889999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.50  E-value=8.1e-08  Score=74.05  Aligned_cols=27  Identities=41%  Similarity=0.995  Sum_probs=25.9

Q ss_pred             CCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          308 CSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       308 C~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      |+|.||..||.+||..+..||++|++.
T Consensus        54 CnHaFH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          54 CNHAFHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             cchHHHHHHHHHHHhhCCCCCCCCcee
Confidence            999999999999999999999999875

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.44  E-value=1.6e-07  Score=66.72  Aligned_cols=42  Identities=26%  Similarity=0.764  Sum_probs=33.6

Q ss_pred             cccccccccccCCceEEeCCC-----CcccHHHHHHHHhc--CCCccccC
Q 019720          289 ECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRI--LSCCPLCK  331 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR  331 (336)
                      .|.||++ .+++++..+.||.     |.+|.+|+++|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4445555689984     99999999999965  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=5.5e-07  Score=90.04  Aligned_cols=51  Identities=29%  Similarity=0.817  Sum_probs=41.0

Q ss_pred             CCCCcccccccccccCC--------------ceEEeCCCCcccHHHHHHHHh-cCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKE--------------EVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~--------------~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~  335 (336)
                      +....|+||+.+.+.-.              ....+||+|+||..|+.+|.. .+-.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            44568999999876421              234669999999999999998 5669999999874

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1.2e-07  Score=72.49  Aligned_cols=49  Identities=35%  Similarity=0.776  Sum_probs=36.4

Q ss_pred             CCCcccccccccccCCceEEe----------CCCCcccHHHHHHHHhc---CCCccccCcCc
Q 019720          286 EDPECCICLAKYKEKEEVRKL----------PCSHMFHLKCVDQWLRI---LSCCPLCKQEL  334 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~L----------PC~H~FH~~CI~~WL~~---~~tCPlCR~~I  334 (336)
                      .+..|.||...|+.--.--++          -|.|.||..||.+|+..   ++.||+||+..
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            344899999999752211122          28999999999999975   46799999864

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.28  E-value=5.5e-07  Score=62.24  Aligned_cols=38  Identities=32%  Similarity=0.767  Sum_probs=23.0

Q ss_pred             ccccccccccCCc-eEEeCCCCcccHHHHHHHHhcC----CCcc
Q 019720          290 CCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWLRIL----SCCP  328 (336)
Q Consensus       290 C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~WL~~~----~tCP  328 (336)
                      |+||.+ |.+++. -++|||||+|+++||+++++.+    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 866443 3789999999999999999854    3577

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=6.4e-07  Score=83.58  Aligned_cols=47  Identities=32%  Similarity=0.804  Sum_probs=41.0

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHH-HHhcCCC-ccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQ-WLRILSC-CPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~-WL~~~~t-CPlCR~~I  334 (336)
                      ..|..|.||++.-+.+   ..+||||+||..||-. |-+.+.- ||+||+.+
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence            5688999999998877   7889999999999999 9877654 99999865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.16  E-value=1.2e-06  Score=67.20  Aligned_cols=48  Identities=21%  Similarity=0.416  Sum_probs=39.1

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      .+...|+||.+-+.++   ..+||||.|.+.||.+|++. +.+||+|+.++.
T Consensus         2 P~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~   50 (73)
T PF04564_consen    2 PDEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS   50 (73)
T ss_dssp             SGGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred             CcccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence            3567899999999999   88999999999999999998 899999998874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.13  E-value=6.9e-07  Score=94.87  Aligned_cols=49  Identities=37%  Similarity=0.952  Sum_probs=39.4

Q ss_pred             CCCCcccccccccccCCceEEeC------CCCcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP------CSHMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP------C~H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      .+..||+||......-|  |.||      |+|.||..|+-+|++.  +.+||+||..+.
T Consensus      1467 sG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            56779999998876221  4555      8899999999999986  578999998764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=1.4e-06  Score=70.41  Aligned_cols=48  Identities=33%  Similarity=0.834  Sum_probs=35.6

Q ss_pred             CCccccccccccc------------CCc-eEEeC-CCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          287 DPECCICLAKYKE------------KEE-VRKLP-CSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~------------~~~-vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      -+.|+||...+-+            .++ +...- |+|.||..||.+||+++..||||.++-
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            4578888755422            122 22333 999999999999999999999998753

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.07  E-value=7.5e-07  Score=67.91  Aligned_cols=49  Identities=29%  Similarity=0.798  Sum_probs=23.4

Q ss_pred             CCcccccccccccCCceEEe-----CCCCcccHHHHHHHHhc----C-------CCccccCcCcC
Q 019720          287 DPECCICLAKYKEKEEVRKL-----PCSHMFHLKCVDQWLRI----L-------SCCPLCKQELE  335 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~L-----PC~H~FH~~CI~~WL~~----~-------~tCPlCR~~I~  335 (336)
                      +.+|.||.+...+++++-.+     .|++.||..|+.+||..    +       .+||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            45899999987744333222     27899999999999863    1       24999999873

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.92  E-value=3.7e-06  Score=80.90  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=43.8

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcCC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      .-..|-||.+-|..+   ..+||+|.||.-||++.|..+..||.|+.++.+
T Consensus        22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence            446899999999999   889999999999999999999999999988753

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.90  E-value=5.9e-06  Score=82.08  Aligned_cols=52  Identities=29%  Similarity=0.759  Sum_probs=41.1

Q ss_pred             CCCCCCCCCcccccccccccCC-ceEEeCCCCcccHHHHHHHHhcCCCccccCcC
Q 019720          280 NSAPANEDPECCICLAKYKEKE-EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQE  333 (336)
Q Consensus       280 ~~~~~~~~~~C~ICL~~f~~~~-~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~  333 (336)
                      .....-|-.+|++||+..++.. .++...|+|.||..|+.+|-  ..+||+||.-
T Consensus       168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~  220 (493)
T KOG0804|consen  168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYC  220 (493)
T ss_pred             CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhh
Confidence            3444567789999999987764 34556699999999999995  4789999963

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=6e-06  Score=83.37  Aligned_cols=45  Identities=29%  Similarity=0.732  Sum_probs=36.8

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-----CCccccCcCc
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-----SCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~I  334 (336)
                      +..|+|||+.-.-+   ..+.|||+||..||-+.+...     ..||+|+..|
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I  235 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI  235 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence            78999999987666   344599999999998887543     5699999876

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=2.2e-05  Score=76.25  Aligned_cols=49  Identities=31%  Similarity=0.783  Sum_probs=40.6

Q ss_pred             CCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      ++..+|-|||++-.+-   .+|||.|. .|..|.+.---....||+||++|++
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            5578999999986654   89999996 6889988876667889999999863

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.72  E-value=1.4e-05  Score=75.58  Aligned_cols=47  Identities=23%  Similarity=0.579  Sum_probs=42.4

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .-..|-||-+-+..+   ..++|||.||.-||+.-|..+.-||+||.+-+
T Consensus        24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence            456899999999998   78899999999999999999999999998643

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.69  E-value=8e-06  Score=85.62  Aligned_cols=51  Identities=25%  Similarity=0.582  Sum_probs=45.7

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .....|++||..+.++......+|+|.||..||+.|-+.-++||+||..+.
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            345689999999999988888889999999999999999999999998654

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=7.3e-05  Score=74.62  Aligned_cols=49  Identities=37%  Similarity=0.823  Sum_probs=44.4

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...+.+|+||...+.++   ..+||||.|+..||++-+..+..||+||.++.
T Consensus        81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence            36788999999999998   77799999999999999998899999999875

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=7.8e-05  Score=73.08  Aligned_cols=51  Identities=33%  Similarity=0.871  Sum_probs=39.6

Q ss_pred             CCCCcccccccccccCC----ceEEeC-CCCcccHHHHHHHH--hc-----CCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKE----EVRKLP-CSHMFHLKCVDQWL--RI-----LSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~----~vr~LP-C~H~FH~~CI~~WL--~~-----~~tCPlCR~~I~  335 (336)
                      ..+.+|.||++...+..    ....|| |+|.||..||++|-  +.     ...||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            45789999999987764    123446 99999999999997  33     467999998653

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.26  E-value=0.0001  Score=70.16  Aligned_cols=50  Identities=24%  Similarity=0.782  Sum_probs=42.0

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-----------------------CCCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-----------------------LSCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-----------------------~~tCPlCR~~I  334 (336)
                      .....|.|||--|.+++...+++|-|.||..|+.+.|..                       +..||+||..|
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i  185 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERI  185 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhc
Confidence            345689999999999999999999999999999776521                       24599999876

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=4.8e-05  Score=73.83  Aligned_cols=47  Identities=32%  Similarity=0.663  Sum_probs=40.3

Q ss_pred             CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhc-CCCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRI-LSCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~-~~tCPlCR~~I  334 (336)
                      ..+..|+|||+-++..   +..+ |.|.||.+||.+-++. +.+||-||+.+
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l   89 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKL   89 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence            4577999999998876   5555 9999999999999975 78999999875

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.16  E-value=0.00013  Score=71.73  Aligned_cols=47  Identities=36%  Similarity=0.854  Sum_probs=40.1

Q ss_pred             CCCcccccccccccC-CceEEeCCCCcccHHHHHHHHhcC--CCccccCc
Q 019720          286 EDPECCICLAKYKEK-EEVRKLPCSHMFHLKCVDQWLRIL--SCCPLCKQ  332 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~-~~vr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~  332 (336)
                      -+.-|..|-+.|-.. +.+-.|||.|+||..|+...|.+|  .+||.||+
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            356799999998765 457889999999999999999876  67999994

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00019  Score=51.78  Aligned_cols=47  Identities=26%  Similarity=0.710  Sum_probs=33.2

Q ss_pred             CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHh-cCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLR-ILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~-~~~tCPlCR~~I~  335 (336)
                      -++||.||.+.=.+.   ..-.|+|. .+-+|-.+-++ .+..||+||++|+
T Consensus         6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            347999998774443   33449996 45667544444 7899999999874

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.95  E-value=0.00018  Score=53.74  Aligned_cols=44  Identities=32%  Similarity=0.686  Sum_probs=22.8

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      --.|++|.+-++++  +....|.|+|+..||.+-+.  ..||+|+.+.
T Consensus         7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred             hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence            45799999998777  34455999999999988544  4599999764

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0003  Score=61.60  Aligned_cols=32  Identities=28%  Similarity=0.784  Sum_probs=29.3

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccH
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHL  314 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~  314 (336)
                      +..+..||.||||+++.++.+..|||-.+||+
T Consensus       173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            45677899999999999999999999999996

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.71  E-value=0.00077  Score=67.47  Aligned_cols=50  Identities=30%  Similarity=0.669  Sum_probs=43.2

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++..|++|.....++-..  ..|+|.||..|+.+|+..+..||.|+..+.
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccc
Confidence            45778999999999998332  579999999999999999999999987653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.66  E-value=0.00094  Score=48.91  Aligned_cols=43  Identities=23%  Similarity=0.566  Sum_probs=29.2

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc--CCCccc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--LSCCPL  329 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--~~tCPl  329 (336)
                      .-...|+|.+..|+++  ++-..|+|+|-++.|.++++.  ...||+
T Consensus         9 ~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3457899999999987  455579999999999999944  456998

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.57  E-value=0.0011  Score=56.44  Aligned_cols=37  Identities=27%  Similarity=0.605  Sum_probs=32.0

Q ss_pred             CCcccccccccccCCceEEeCCC------CcccHHHHHHHHhc
Q 019720          287 DPECCICLAKYKEKEEVRKLPCS------HMFHLKCVDQWLRI  323 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~------H~FH~~CI~~WL~~  323 (336)
                      ..||+||++.+.+++.+..++|+      |.||.+|+++|-+.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            56899999999997778888885      99999999999433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.54  E-value=0.0014  Score=72.82  Aligned_cols=53  Identities=32%  Similarity=0.764  Sum_probs=44.2

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----------CCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----------SCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----------~tCPlCR~~I~  335 (336)
                      ....|+.|-||..+--.......|.|+|+||..|.++-|+..          -+||+|+.+|+
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            346788999999988888888899999999999998766542          25999999886

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.42  E-value=0.0021  Score=45.15  Aligned_cols=40  Identities=35%  Similarity=0.884  Sum_probs=28.1

Q ss_pred             ccccccccccCCceEEeCCC-----CcccHHHHHHHHhc--CCCcccc
Q 019720          290 CCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRI--LSCCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~-----H~FH~~CI~~WL~~--~~tCPlC  330 (336)
                      |-||+++-++++. -+.||+     ...|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            7799999777663 457863     48899999999974  5679988

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.42  E-value=0.0011  Score=65.37  Aligned_cols=45  Identities=29%  Similarity=0.837  Sum_probs=37.3

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      .-|-||-+.   +..++.=||||..|..|+..|-..  .++||.||.+|.
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            479999765   445688899999999999999854  589999998774

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0031  Score=58.02  Aligned_cols=49  Identities=33%  Similarity=0.781  Sum_probs=40.0

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc---C-----CCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI---L-----SCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~---~-----~tCPlCR~~I  334 (336)
                      .-+..|..|-..++.||.+| |-|-|.||.+|+++|-..   +     -.||.|..+|
T Consensus        48 DY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei  104 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI  104 (299)
T ss_pred             CCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence            34567999999999998876 679999999999999643   1     2499998875

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0069  Score=57.30  Aligned_cols=52  Identities=23%  Similarity=0.478  Sum_probs=40.1

Q ss_pred             CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      .....+.+|++|-+.=..+  ....+|+|+||-.||..=+.-  ..+||.|-.+++
T Consensus       234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3456788999998874444  345669999999999987654  478999987764

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.99  E-value=0.0062  Score=53.37  Aligned_cols=49  Identities=22%  Similarity=0.673  Sum_probs=33.8

Q ss_pred             CCCCCcccccccccccCCceEEeCCCC---cccHHHHHHHHhc--CCCccccCcCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSH---MFHLKCVDQWLRI--LSCCPLCKQEL  334 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H---~FH~~CI~~WL~~--~~tCPlCR~~I  334 (336)
                      +..+.+|-||.++..  +....=.|+.   .-|.+|+++|+..  +.+||+|+.+.
T Consensus         5 s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          5 SLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             CCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            456779999998843  2222000333   6699999999965  46799998753

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.96  E-value=0.0028  Score=64.57  Aligned_cols=48  Identities=23%  Similarity=0.627  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-----CCCccccCcCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-----LSCCPLCKQEL  334 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-----~~tCPlCR~~I  334 (336)
                      ..+..+|.+|-+.-++.   .+..|.|.||+-||.++...     +-+||.|..++
T Consensus       533 nk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             ccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            34567999999887766   66779999999999998743     57899998765

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.0044  Score=61.52  Aligned_cols=48  Identities=33%  Similarity=0.712  Sum_probs=39.6

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--------CCccccCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--------SCCPLCKQ  332 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--------~tCPlCR~  332 (336)
                      ..-..|+||.++....+....|||+|+||+.|....+.+.        -.||-|+-
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            4557899999998877889999999999999999998652        24876654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.76  E-value=0.0054  Score=43.35  Aligned_cols=44  Identities=23%  Similarity=0.528  Sum_probs=22.2

Q ss_pred             ccccccccccCCceEEeC--CCCcccHHHHHHHHh-cCCCccccCcCc
Q 019720          290 CCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLR-ILSCCPLCKQEL  334 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LP--C~H~FH~~CI~~WL~-~~~tCPlCR~~I  334 (336)
                      |++|.++....+ ...+|  |++..+..|..+-++ .+..||-||++-
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984433 34567  689999999888876 478999999864

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.71  E-value=0.0045  Score=49.82  Aligned_cols=33  Identities=24%  Similarity=0.723  Sum_probs=28.5

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHH
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVD  318 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~  318 (336)
                      .++..|++|-..+.. ......||+|+||..|++
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            467789999999988 567788999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.011  Score=57.35  Aligned_cols=49  Identities=18%  Similarity=0.408  Sum_probs=39.6

Q ss_pred             CCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcC
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQE  333 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~  333 (336)
                      ....+...|++|+....++   .++. -|-+||..||-+.++..+.||+=-.+
T Consensus       295 ~l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             cCCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            3446678999999998887   3333 59999999999999999999985444

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.69  E-value=0.0055  Score=55.47  Aligned_cols=44  Identities=23%  Similarity=0.446  Sum_probs=39.1

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcC
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQE  333 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~  333 (336)
                      ...|.||-.+|+.+   .++.|||+||..|.-.=.+...+|-+|-+.
T Consensus       196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            45899999999998   677899999999999888888999999764

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.68  E-value=0.0033  Score=60.81  Aligned_cols=49  Identities=22%  Similarity=0.527  Sum_probs=41.2

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      .....+|.+|-.-+-|...  +.-|-|.||+.||-+.|..+.+||.|.-.|
T Consensus        12 ~n~~itC~LC~GYliDATT--I~eCLHTFCkSCivk~l~~~~~CP~C~i~i   60 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATT--ITECLHTFCKSCIVKYLEESKYCPTCDIVI   60 (331)
T ss_pred             cccceehhhccceeecchh--HHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence            3567899999988888732  334999999999999999999999998655

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.012  Score=54.99  Aligned_cols=75  Identities=15%  Similarity=0.249  Sum_probs=55.8

Q ss_pred             HhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          261 ISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       261 i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++.|-.++|...+...+...-........|++|.+.+.+...+..|. |+|+|+.+|+++..+....||+|-.++.
T Consensus       195 lkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk  270 (303)
T KOG3039|consen  195 LKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK  270 (303)
T ss_pred             hhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence            44555566665543222222222346789999999999988877776 9999999999999999999999988764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.47  E-value=0.0087  Score=58.59  Aligned_cols=49  Identities=27%  Similarity=0.610  Sum_probs=35.8

Q ss_pred             CCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          281 SAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       281 ~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ......+.-|.||+++.++-   ..+||||+-+  |..-- +...+||+||+.|+
T Consensus       299 ~~~~~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             ccccCCCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            34445667899999987774   7899999955  65443 33455999998764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.0056  Score=64.91  Aligned_cols=45  Identities=24%  Similarity=0.660  Sum_probs=35.9

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCc
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I  334 (336)
                      -..|+.|=....+-   ....|+|+||..||..=+.. ...||-|-.++
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF  688 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAF  688 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            35899998665553   44559999999999999876 57899998765

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.0093  Score=56.97  Aligned_cols=45  Identities=22%  Similarity=0.414  Sum_probs=40.3

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      ...|-||-..|.++   .+..|+|+||..|.-+=++....|++|-+++
T Consensus       241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence            45699999999999   7788999999999998888889999998765

>PHA03096 p28-like protein; Provisional

Probab=94.84  E-value=0.014  Score=56.05  Aligned_cols=45  Identities=27%  Similarity=0.496  Sum_probs=33.1

Q ss_pred             CcccccccccccCC----ceEEeC-CCCcccHHHHHHHHhc---CCCccccCc
Q 019720          288 PECCICLAKYKEKE----EVRKLP-CSHMFHLKCVDQWLRI---LSCCPLCKQ  332 (336)
Q Consensus       288 ~~C~ICL~~f~~~~----~vr~LP-C~H~FH~~CI~~WL~~---~~tCPlCR~  332 (336)
                      .+|.||++......    .-..|+ |.|.|+..||..|-..   +.+||-||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            68999999877532    234566 9999999999999754   345555553

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.003  Score=62.26  Aligned_cols=50  Identities=24%  Similarity=0.640  Sum_probs=44.8

Q ss_pred             CCcccccccccccC-CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcCC
Q 019720          287 DPECCICLAKYKEK-EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       287 ~~~C~ICL~~f~~~-~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      ...|+||.++|+.. +++..+-|+|.+|.+|+.+||.....||-|++.+++
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            34799999999987 888888899999999999999999999999998763

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.037  Score=54.21  Aligned_cols=49  Identities=33%  Similarity=0.517  Sum_probs=41.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..||..|+||...=-.   -...||+|.=|..||.+=+-.++.|=.||..+.
T Consensus       419 ~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            3678899999766333   367899999999999999999999999998663

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.22  E-value=0.023  Score=60.99  Aligned_cols=50  Identities=36%  Similarity=0.861  Sum_probs=37.6

Q ss_pred             CCCCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcC-C------CccccCc
Q 019720          283 PANEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRIL-S------CCPLCKQ  332 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~-~------tCPlCR~  332 (336)
                      +..+..+|.||.+.+...+.+=-- .|-|+||..||.+|-+.. +      .||-|+.
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            446778999999998887654221 167999999999997542 1      4999984

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.05  Score=48.59  Aligned_cols=49  Identities=31%  Similarity=0.715  Sum_probs=33.9

Q ss_pred             CCCcccccccccccCC----ceEEeCCCCcccHHHHHHHHhc----C-------CCccccCcCc
Q 019720          286 EDPECCICLAKYKEKE----EVRKLPCSHMFHLKCVDQWLRI----L-------SCCPLCKQEL  334 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~----~vr~LPC~H~FH~~CI~~WL~~----~-------~tCPlCR~~I  334 (336)
                      +-..|.||..---+|.    ..--..|+.-||.-|+..||+.    +       ..||.|..+|
T Consensus       164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi  227 (234)
T KOG3268|consen  164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI  227 (234)
T ss_pred             hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence            3456888875443432    2223459999999999999964    2       2499999887

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.15  E-value=0.046  Score=39.66  Aligned_cols=45  Identities=24%  Similarity=0.603  Sum_probs=33.1

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ....|-.|...=..   -.++||+|..+..|.+.  +.-+-||+|..+++
T Consensus         6 ~~~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~   50 (55)
T PF14447_consen    6 PEQPCVFCGFVGTK---GTVLPCGHLICDNCFPG--ERYNGCPFCGTPFE   50 (55)
T ss_pred             cceeEEEccccccc---cccccccceeeccccCh--hhccCCCCCCCccc
Confidence            34456666554333   37899999999999776  45577999999875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.12  E-value=0.13  Score=48.65  Aligned_cols=52  Identities=17%  Similarity=0.420  Sum_probs=40.8

Q ss_pred             CCCCCCcccccccccccCCceE-EeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVR-KLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr-~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .......|+|...++....... ..||||+|-..++++- +....||+|-.++.
T Consensus       109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT  161 (260)
T ss_pred             cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence            3466789999999996655544 4479999999999997 34567999988764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.66  E-value=0.19  Score=49.30  Aligned_cols=53  Identities=26%  Similarity=0.624  Sum_probs=40.2

Q ss_pred             CCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHH--HhcCCCccccCcCc
Q 019720          279 GNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW--LRILSCCPLCKQEL  334 (336)
Q Consensus       279 ~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~W--L~~~~tCPlCR~~I  334 (336)
                      +..+..++...|.||-....-.   .++||+|..|--|--+-  |-.+..||+||..-
T Consensus        53 SaddtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          53 SADDTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3344456667899998775544   78999999999997554  66788999999754

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.50  E-value=0.07  Score=51.01  Aligned_cols=47  Identities=23%  Similarity=0.570  Sum_probs=39.5

Q ss_pred             CCCcccccccccccCC-ceEEeCCCCcccHHHHHHHHhcCCCccccCc
Q 019720          286 EDPECCICLAKYKEKE-EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQ  332 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~-~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  332 (336)
                      ....|+||.+.+-+.. .+..++|+|.-|..|..+-...+-+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3444999999887764 3567889999999999999888899999988

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.32  E-value=0.072  Score=51.14  Aligned_cols=42  Identities=29%  Similarity=0.634  Sum_probs=35.0

Q ss_pred             CcccccccccccCCceEEeC-CCCcccHHHHHHHHh-cCCCccccCc
Q 019720          288 PECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLR-ILSCCPLCKQ  332 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~-~~~tCPlCR~  332 (336)
                      ..|+.|..-..++   ..+| |+|.||.+||..-|. ....||.|..
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            6899999888777   4556 799999999998875 5688999975

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.27  E-value=0.082  Score=50.44  Aligned_cols=48  Identities=29%  Similarity=0.705  Sum_probs=37.0

Q ss_pred             CCcccccccccccCCc-eEEeCCC-----CcccHHHHHHHHh--cCCCccccCcCc
Q 019720          287 DPECCICLAKYKEKEE-VRKLPCS-----HMFHLKCVDQWLR--ILSCCPLCKQEL  334 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~-vr~LPC~-----H~FH~~CI~~WL~--~~~tCPlCR~~I  334 (336)
                      +..|-||.++.+.... ..+.||.     +..|+.|+++|+.  .+.+|.+|+...
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~  133 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF  133 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence            5789999998765432 4567863     7789999999997  457899998753

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.91  E-value=0.23  Score=49.28  Aligned_cols=27  Identities=30%  Similarity=0.992  Sum_probs=21.3

Q ss_pred             CCCcccHHHHHHHHhc-------------CCCccccCcCc
Q 019720          308 CSHMFHLKCVDQWLRI-------------LSCCPLCKQEL  334 (336)
Q Consensus       308 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~I  334 (336)
                      |.=.+|.+|+.+|+..             +.+||.||++.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            5677899999999844             33599999975

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.069  Score=51.50  Aligned_cols=45  Identities=29%  Similarity=0.600  Sum_probs=31.8

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .-.|--|--.+..  .-|.+||+|+||.+|...  ...+.||+|-..|+
T Consensus        90 VHfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   90 VHFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             eEeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            4456666444333  348899999999999754  34568999987664

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.08  E-value=0.1  Score=35.93  Aligned_cols=41  Identities=24%  Similarity=0.607  Sum_probs=23.1

Q ss_pred             ccccccccccCCceEEeCCCCcccHHHHHHHHhcCC--Ccccc
Q 019720          290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS--CCPLC  330 (336)
Q Consensus       290 C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlC  330 (336)
                      |.+|-+-...|+.-..-.|+=.+|..|++.+++.+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            567777766664333223888999999999998764  79988

; PDB: 3NW0_A 2CT0_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.98  E-value=0.12  Score=55.84  Aligned_cols=41  Identities=24%  Similarity=0.635  Sum_probs=32.8

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQE  333 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~  333 (336)
                      ..|..|--..+-+.  .---|+|.||..|+.   .....||-|+-+
T Consensus       841 skCs~C~~~LdlP~--VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDLPF--VHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCccccce--eeeecccHHHHHhhc---cCcccCCccchh
Confidence            68999988877772  333499999999999   556789999863

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=90.93  E-value=0.08  Score=56.66  Aligned_cols=44  Identities=27%  Similarity=0.653  Sum_probs=35.6

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      ..|.||++    .+.....+|+|.||.+|+.+-+..  +..||+||..++
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            78999999    344477889999999999998754  356999998653

>PHA02862 5L protein; Provisional

Probab=89.58  E-value=0.2  Score=43.34  Aligned_cols=26  Identities=31%  Similarity=0.857  Sum_probs=20.9

Q ss_pred             CCcccHHHHHHHHhc--CCCccccCcCc
Q 019720          309 SHMFHLKCVDQWLRI--LSCCPLCKQEL  334 (336)
Q Consensus       309 ~H~FH~~CI~~WL~~--~~tCPlCR~~I  334 (336)
                      ...-|++|+.+|++.  +.+||+||.+.
T Consensus        25 ~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862         25 YKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             chhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            446799999999975  46799999753

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.85  E-value=0.068  Score=51.19  Aligned_cols=43  Identities=30%  Similarity=0.739  Sum_probs=30.4

Q ss_pred             CCCcccccccccccCCceEEeCCCCcc-cHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMF-HLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~F-H~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .+.-|.||++.   +-+...|+|||.- |.+|=    +.-+.||+||+.|.
T Consensus       299 ~~~LC~ICmDa---P~DCvfLeCGHmVtCt~CG----krm~eCPICRqyi~  342 (350)
T KOG4275|consen  299 TRRLCAICMDA---PRDCVFLECGHMVTCTKCG----KRMNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHHhcC---CcceEEeecCcEEeehhhc----cccccCchHHHHHH
Confidence            37889999876   4445889999964 34442    22358999998663

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=88.28  E-value=0.38  Score=51.78  Aligned_cols=51  Identities=22%  Similarity=0.661  Sum_probs=39.8

Q ss_pred             CCCCCcccccccccccCCceEEeCCC-----CcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~-----H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      .+++..|-||..+=..++++- =||+     ...|++|+-+|+.-  ...|-+|+.+++
T Consensus         9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~   66 (1175)
T COG5183           9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK   66 (1175)
T ss_pred             CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence            456789999998877776654 4664     57899999999975  456999998764

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.31  E-value=0.3  Score=53.08  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=29.1

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHH
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL  321 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL  321 (336)
                      +.+.+|.+|...+... .-.+-||+|.||++||.+-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            4567899999887665 55678999999999997653

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.73  E-value=0.4  Score=46.48  Aligned_cols=45  Identities=18%  Similarity=0.570  Sum_probs=36.0

Q ss_pred             CCCCCcccccccccccCCceEEeCC--CCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPC--SHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC--~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..+-.+|+||.+.+..+    ...|  ||.-|..|-.   +....||.||.++-
T Consensus        45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            34557999999999987    4558  7999998865   56788999998863

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.52  E-value=0.34  Score=50.64  Aligned_cols=47  Identities=34%  Similarity=0.857  Sum_probs=39.2

Q ss_pred             CCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          281 SAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       281 ~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      +...+....|.||+.+.    ..+..+|.   |..|..+|+..+..||+|+..+
T Consensus       473 ~~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~  519 (543)
T KOG0802|consen  473 SQLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYM  519 (543)
T ss_pred             hhhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhh
Confidence            34456678999999997    44777898   9999999999999999998754

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=86.41  E-value=0.47  Score=46.46  Aligned_cols=51  Identities=18%  Similarity=0.540  Sum_probs=35.3

Q ss_pred             CCCCcccccccccccCCc-eEEeCCCCcccHHHHHHHH-hcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWL-RILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~  335 (336)
                      .|++-|+.|+++++..|+ ..--|||-..|+-|-..-- ..|..||-||+..+
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            345569999999988765 3334578777777744322 24789999998643

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=86.33  E-value=0.88  Score=32.99  Aligned_cols=44  Identities=25%  Similarity=0.666  Sum_probs=34.4

Q ss_pred             CCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccc--cCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPL--CKQE  333 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPl--CR~~  333 (336)
                      +...|.+|-+.|.+++.+.+=| |+-.+|++|-++    ...|-.  |..+
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            4567999999999888888888 999999999654    455544  5543

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.75  E-value=0.41  Score=45.17  Aligned_cols=50  Identities=26%  Similarity=0.712  Sum_probs=35.0

Q ss_pred             CCCCCcccccccccccCCce-EEeCC-----CCcccHHHHHHHHhcC--------CCccccCcC
Q 019720          284 ANEDPECCICLAKYKEKEEV-RKLPC-----SHMFHLKCVDQWLRIL--------SCCPLCKQE  333 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~v-r~LPC-----~H~FH~~CI~~WL~~~--------~tCPlCR~~  333 (336)
                      .+.+..|-||+..=+|+..- =+=||     +|--|..|+..|...+        -+||-|+.+
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE   80 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE   80 (293)
T ss_pred             cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence            34566788999885554211 13466     4999999999998543        249999864

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.69  E-value=0.3  Score=34.43  Aligned_cols=30  Identities=30%  Similarity=0.784  Sum_probs=22.8

Q ss_pred             eCC-CCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          306 LPC-SHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       306 LPC-~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..| .|..+..|+..-|.+...||+|+++++
T Consensus        16 i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP   46 (50)
T PF03854_consen   16 IKCSDHYLCLNCLTLMLSRSDRCPICGKPLP   46 (50)
T ss_dssp             EE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred             eeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence            448 599999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.13  E-value=0.51  Score=50.51  Aligned_cols=40  Identities=28%  Similarity=0.655  Sum_probs=28.0

Q ss_pred             cccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccc
Q 019720          289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPL  329 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPl  329 (336)
                      .|+||--..... ......|+|+-|.+|...|+.+...||-
T Consensus      1030 ~C~~C~l~V~gs-s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGS-SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeEeeEeecc-chhhccccccccHHHHHHHHhcCCcCCC
Confidence            355554443332 2223448999999999999999999984

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=84.01  E-value=0.27  Score=52.22  Aligned_cols=47  Identities=36%  Similarity=0.751  Sum_probs=38.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC---CCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~  335 (336)
                      -..+|.||+..|.++   ..+.|.|.|+..|+..-+...   ..||+|+..++
T Consensus        20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e   69 (684)
T KOG4362|consen   20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE   69 (684)
T ss_pred             hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence            356899999999998   567799999999998877543   46999997765

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=83.21  E-value=0.4  Score=54.03  Aligned_cols=45  Identities=31%  Similarity=0.666  Sum_probs=37.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCc
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQ  332 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~  332 (336)
                      +...|.||++.....-  ...-|+|.++..|...|+..+..||.|+.
T Consensus      1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            3458999999988432  34559999999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		9e-10
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-08
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		9e-08
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		4e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-05

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335
           +C ICL+  +E E+VR+LPC H+FH  CVDQWL     CP+C+ ++E
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 289 ECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCK 331
           EC +CLA+ ++ EE R LP C H FH +CVD WL   S CPLC+
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 256 ASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPE---CCICLAKYKEKEEVRKLPCSHMF 312
            S     +LPS+R+             P N   E   C +C+  ++ ++ +R LPC+H F
Sbjct: 1   GSSGSSGQLPSYRFN------------PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEF 48
Query: 313 HLKCVDQWLRILSCCPLCKQE 333
           H KCVD+WL+    CP+C+ +
Sbjct: 49  HAKCVDKWLKANRTCPICRAD 69

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           EC +C   Y   E VR+LPC+H+FH  C+  WL     CP+C++ L
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 330
           C +CL  +K ++E+   PC H FH KC+ +WL +   CPLC
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
           C IC ++Y + +   +LPC H FH  CV  WL+    CP+C+
Sbjct: 43  CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	5e-28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	3e-23
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	7e-23
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-22
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-19
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	6e-12
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	8e-12
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-07
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-07
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-06
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	9e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	9e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	9e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  103 bits (258), Expect = 5e-28
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 256 ASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLK 315
            S     +LPS+R+   +           +E   C +C+  ++ ++ +R LPC+H FH K
Sbjct: 1   GSSGSSGQLPSYRFNPNNHQ---------SEQTLCVVCMCDFESRQLLRVLPCNHEFHAK 51

Query: 316 CVDQWLRILSCCPLCKQELE 335
           CVD+WL+    CP+C+ +  
Sbjct: 52  CVDKWLKANRTCPICRADSG 71

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 90.5 bits (225), Expect = 3e-23
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 277 EAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335
           +       + + +C ICL+  +E E+VR+LPC H+FH  CVDQWL     CP+C+ ++E
Sbjct: 4   DGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 89.4 bits (222), Expect = 7e-23
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 274 SNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQE 333
           S+  +G     N    C +CL  +K ++E+   PC H FH KC+ +WL +   CPLC   
Sbjct: 2   SSGSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 61

Query: 334 LER 336
           + +
Sbjct: 62  VLQ 64

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 88.9 bits (221), Expect = 2e-22
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 246 NMNMGAADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRK 305
           + +   A+  AS + I  LP                    ++  C IC ++Y + +   +
Sbjct: 7   HHSHMVANPPASKESIDALPEILVTEDH--------GAVGQEMCCPICCSEYVKGDVATE 58

Query: 306 LPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           LPC H FH  CV  WL+    CP+C+   
Sbjct: 59  LPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 79.9 bits (198), Expect = 2e-19
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 284 ANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQEL 334
            ++  EC +CLA+ ++ EE R LP C H FH +CVD WL   S CPLC+  +
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 80.2 bits (198), Expect = 2e-19
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335
                EC +C   Y   E VR+LPC+H+FH  C+  WL     CP+C++ L 
Sbjct: 12  VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 76.3 bits (188), Expect = 5e-18
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           ++ ECCIC+    +      LPC+H F  KC+D+W      CP+C+ ++  
Sbjct: 14  DEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335
           A     C ICL           LPC H F   C+ +W+R    CPLCK  +E
Sbjct: 2   ATVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 287 DPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWLRILSCCPLCK 331
              C ICL            LPC H+ H  C ++ L+    CPLC 
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 59.5 bits (144), Expect = 6e-12
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 274 SNLEAGNSAPANEDPECCICLAKYKE----KEEVRKLPCSHMFHLKCVDQWLRILSCCPL 329
           S+  +G     +    C IC+  Y E       +    C H+F  +C+   L+  + CP 
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 330 CKQEL 334
           C++++
Sbjct: 62  CRKKI 66

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 59.5 bits (144), Expect = 8e-12
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 290 CCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE 335
           C  C A+ K+++ V     C+H FH  C+  W++  + CPLC+Q+  
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 278 AGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           +GN+AP+   PEC ICL           LPC H+F   CV     +   C LC+QE+
Sbjct: 6   SGNTAPSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 278 AGNSAPANEDPECCICLAKYKEKEEVRK----LPCSHMFHLKCVDQWLRILSCCPLCKQE 333
                  +    C IC+  Y E  +  +      C H+F  +C+   L+  + CP C+++
Sbjct: 1   GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 60

Query: 334 LER 336
           +  
Sbjct: 61  INH 63

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 289 ECCICLAKYKEKEEVRK----LPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
            C IC+  Y E  +  +      C H+F  +C+   L+  + CP C++++  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 278 AGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE 335
           +G S        C IC   ++         C H F   C  +  R    C +C Q   
Sbjct: 6   SGGSEEEEIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 273 DSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCK 331
            S+++  +     E   C IC+ K ++        CS +    C+ +WL    + CP C+
Sbjct: 8   HSHMDEQSVESIAEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCR 65

Query: 332 QEL 334
             L
Sbjct: 66  APL 68

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 277 EAGNSAPANEDPECCICLAKYKEKEEVRK-----LPCSHMFHLKCVDQWLR--------- 322
                   NE+  C IC A   +  EV         C    H  C+++W +         
Sbjct: 298 GPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFL 357

Query: 323 --ILSCCPLCKQEL 334
                 CP CK +L
Sbjct: 358 EVSFGQCPFCKAKL 371

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 286 EDPECCICLAKY---------------KEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 330
               C IC                    E+  V    C+H FH  C+ +WL+    CPL 
Sbjct: 36  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

Query: 331 KQELE 335
            +E E
Sbjct: 96  NREWE 100

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 286 EDPECCICLAKY---------------KEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 330
               C IC                    E+  V    C+H FH  C+ +WL+    CPL 
Sbjct: 47  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

Query: 331 KQELE 335
            +E E
Sbjct: 107 NREWE 111

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
                C IC     +        C H F   C+ +     + CP C   + +
Sbjct: 13  TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 270 KRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCP 328
            +V            +    C IC    K+   V+  PC H+    C+  W       CP
Sbjct: 315 IKVTQEQYELYCEMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCP 371

Query: 329 LCKQELER 336
            C+ E++ 
Sbjct: 372 FCRCEIKG 379

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.9 bits (113), Expect = 3e-07
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 282 APANEDPECCICLAKYKEKEEVRK----LPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           A  +    C IC+  Y E  +  +      C H+F  +C+   L+  + CP C++++  
Sbjct: 2   AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 289 ECCICLAKYKEKEEVRK----LPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
            C IC+  Y E  +  +      C H+F  +C+   L+  + CP C++++  
Sbjct: 74  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
            + +C IC   + E      L C+H F   C+++W++    CP+C+++++ 
Sbjct: 63  NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 49/278 (17%), Positives = 82/278 (29%), Gaps = 72/278 (25%)

Query: 3   TRYSFPSDSLCNSSTTVPYSS------SPPATEDRMARN--------RPAARAGAPSF-- 46
           TR+   +D L  ++TT           +P   +  + +                 P    
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 47  LIRTAMRISRARWFNFLR----RVFHYQNGSRSDLGSNP------------FNSSTWMTL 90
           +I  ++R   A W N+      ++      S + L   P            F  S  +  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPT 389

Query: 91  ELLALL-------VQISIIT--FTLSISKKESPIWPMRIWIVGYDIGCLLSLLLLYGRYR 141
            LL+L+         + ++      S+ +K+       I I    I   L L +      
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISI--PSI--YLELKVKLENEY 443

Query: 142 QLYASQVDGFSLPDVEQQRS----SEDSRFS-----HLMNKCRTSLELFFAIWFVMGNVW 192
            L+ S VD +++P             D  F      HL N         F + F      
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF------ 497

Query: 193 VFDSRFGSFQRAPNLHVLCISLLAWNALSYSFPFLLFL 230
             D RF   ++      +     AWNA       L  L
Sbjct: 498 -LDFRF--LEQK-----IRHDSTAWNASGSILNTLQQL 527

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 20/66 (30%)

Query: 286 EDPECCICLAKYKEKEE---------------VRKLPCSHMFHLKCVDQWLRILSC---- 326
            + +C IC+ K                      R   CSH FHL C+       +     
Sbjct: 24  PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSL 83

Query: 327 -CPLCK 331
            CP CK
Sbjct: 84  QCPSCK 89

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPLCKQELER 336
           +    C IC +   +        C    HL CV ++ +      CP C      
Sbjct: 13  DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           N    C +C   + +      + C H F   C+ ++L     CP+C  ++
Sbjct: 13  NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 286 EDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRILS---CCPLCKQE 333
           E  EC IC+  + E++   K L C H    +C+++ L        CP C + 
Sbjct: 14  EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 278 AGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQEL 334
             ++ P+  + +C IC+    E      LPC+H     C    +   S CCP C++ +
Sbjct: 6   PKDAIPSLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 4/52 (7%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSC-CPLCKQELER 336
           E  +C  C              C H     C+D+  R     CP C+ +L R
Sbjct: 51  ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 274 SNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWL--RILSC 326
           S+  +G S   +    C IC  +  ++  +   PC      H  H  C+ QW+      C
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRC 60

Query: 327 CPLCKQE 333
           C LCK E
Sbjct: 61  CELCKYE 67

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELER 336
           P     EC ICL   +E     + PC H F   C+ + +R     CP+  + L  
Sbjct: 14  PLESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           ++   C IC   +     +    CSH +   C+ ++L   + CP C   +  
Sbjct: 20  DDLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI 323
            C +CL +Y  ++      C  +F   C+ Q++ +
Sbjct: 7   GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
            C  C A+ K     + LPC H     C++        CP+C+   
Sbjct: 8   RCQQCQAEAKC---PKLLPCLHTLCSGCLEASGM---QCPICQAPW 47

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQEL 334
              +  +C  C          ++  C H F   C+   L   S  C  C++ +
Sbjct: 11  TVEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESI 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.72
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.68
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.58
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.58
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.57
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.55
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.5
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.48
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.47
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.44
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.43
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.42
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.42
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.41
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.4
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.37
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.36
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.34
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.33
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.31
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.3
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.3
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.29
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.25
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.24
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.23
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.22
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.22
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.22
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.22
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.19
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.18
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.17
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.16
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.16
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.14
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.13
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.11
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.1
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.03
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.02
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.0
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.99
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.99
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.99
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.97
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.94
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.94
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.93
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.92
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.89
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.85
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.84
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.82
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.81
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.76
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.69
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.69
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.64
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.57
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.51
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.49
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.35
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.33
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.22
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.99
3nw0_A	238	Non-structural maintenance of chromosomes element	97.61
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.37
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.64
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	92.37
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	88.5
1we9_A	64	PHD finger family protein; structural genomics, PH	86.7
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.51
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	83.69
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	81.59
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	80.14

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.72  E-value=6.8e-18  Score=133.24  Aligned_cols=77  Identities=30%  Similarity=0.660  Sum_probs=67.4

Q ss_pred             CCCCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCcccc
Q 019720          251 AADKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC  330 (336)
Q Consensus       251 ~~~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlC  330 (336)
                      ...+|++++.++.||...+....        ....++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+|
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~--------~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~C   83 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDH--------GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC   83 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTC--------SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTT
T ss_pred             cCCCCCCHHHHHhCCCeeecccc--------cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCc
Confidence            45689999999999988876543        1235678999999999999999999999999999999999999999999


Q ss_pred             CcCcC
Q 019720          331 KQELE  335 (336)
Q Consensus       331 R~~I~  335 (336)
                      |+++.
T Consensus        84 r~~~~   88 (91)
T 2l0b_A           84 RCMFP   88 (91)
T ss_dssp             CCBSS
T ss_pred             CccCC
Confidence            99875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=9.9e-18  Score=127.18  Aligned_cols=68  Identities=34%  Similarity=0.923  Sum_probs=59.2

Q ss_pred             HHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          259 DQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       259 ~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +.+++||.++++...         ...++.+|+||+++|++++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus         4 ~~i~~lp~~~~~~~~---------~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNN---------HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             CCCSSCCCEEBCSSS---------CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             hhHhhCCcEEecCcc---------ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            446788988887543         23567799999999999999999999999999999999999999999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-15  Score=112.56  Aligned_cols=53  Identities=45%  Similarity=1.074  Sum_probs=48.6

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||.++.
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE   62 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence            34567899999999999999999999999999999999999999999999875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=114.21  Aligned_cols=53  Identities=36%  Similarity=0.902  Sum_probs=48.8

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...++.+|+||+++|.+++.++.+||+|.||.+||++|++.+.+||+||+++.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~   63 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL   63 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence            34567899999999999999999999999999999999999999999999875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.57  E-value=1.2e-15  Score=108.46  Aligned_cols=51  Identities=47%  Similarity=1.050  Sum_probs=47.4

Q ss_pred             CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +++.+|+||++++++++....+| |+|.||.+||++|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            46779999999999999999998 9999999999999999999999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.55  E-value=2.8e-15  Score=114.18  Aligned_cols=54  Identities=37%  Similarity=0.918  Sum_probs=49.3

Q ss_pred             CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ....++.+|+||++.|.+++.++.+||+|.||.+||.+|++.+.+||+||+++.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   63 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT   63 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence            344667899999999999999999999999999999999999999999999875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.5e-15  Score=112.84  Aligned_cols=50  Identities=32%  Similarity=0.751  Sum_probs=41.2

Q ss_pred             CCCccccccccccc-----------CCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKE-----------KEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~-----------~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++.+|+||+++|++           ++.++.+| |+|.||.+||++||+.+.+||+||+++.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            45567777777754           55567776 9999999999999999999999999874

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.48  E-value=2.4e-14  Score=101.53  Aligned_cols=51  Identities=29%  Similarity=0.670  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccC-CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEK-EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~-~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .++.+|+||++++.++ +....+||+|.||.+||++|++.+.+||+||+++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4567899999999664 45788999999999999999999999999999875

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.4e-14  Score=104.98  Aligned_cols=54  Identities=24%  Similarity=0.660  Sum_probs=46.9

Q ss_pred             CCCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcCC
Q 019720          283 PANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      ...++.+|+||++.|.++    +.+..++|+|.||.+||++|++.+.+||+||.++.+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            346678999999999875    345788999999999999999999999999999863

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.44  E-value=3.9e-14  Score=105.47  Aligned_cols=52  Identities=25%  Similarity=0.687  Sum_probs=46.1

Q ss_pred             CCCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .+++.+|+||++.+.++    +....++|+|.||.+||++|++.+.+||+||+++.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   62 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence            35678999999999874    55678999999999999999999999999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.43  E-value=8.6e-14  Score=113.23  Aligned_cols=49  Identities=31%  Similarity=0.699  Sum_probs=43.3

Q ss_pred             CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          286 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~---------------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      ++..|+||+++|+++.               .++.++|+|.||..||++||+.+.+||+||+++
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence            5678999999998652               367789999999999999999999999999975

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.42  E-value=8.6e-14  Score=113.33  Aligned_cols=50  Identities=32%  Similarity=0.588  Sum_probs=42.1

Q ss_pred             CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHH-----hcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWL-----RILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~---------------~vr~LPC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~  335 (336)
                      .+.+|+|||++|.+++               .++.+||+|.||.+||++|+     +.+.+||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4568999999997764               44578999999999999999     45679999998764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.42  E-value=7.9e-14  Score=101.48  Aligned_cols=50  Identities=26%  Similarity=0.692  Sum_probs=44.6

Q ss_pred             CCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++.+|+||++.+.++    +....++|+|.||.+||++|++.+.+||+||+++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence            567899999999874    45678899999999999999999999999999875

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-13  Score=106.83  Aligned_cols=52  Identities=31%  Similarity=0.818  Sum_probs=44.5

Q ss_pred             CCCCCCcccccccccccCCceEEeCCC-----CcccHHHHHHHHhcC--CCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCS-----HMFHLKCVDQWLRIL--SCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~  335 (336)
                      ...++.+|.||+++|++++.+ ++||+     |.||.+||++||+.+  .+||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            345677999999999988876 69996     999999999999875  58999999763

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.4e-13  Score=103.08  Aligned_cols=50  Identities=38%  Similarity=0.782  Sum_probs=44.6

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...++.+|+||++.+.++   ..+||+|.||.+||++|++.+.+||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           11 PSLTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSSSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             cCCCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            345678999999999876   77899999999999999999999999999875

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=4.6e-13  Score=100.55  Aligned_cols=50  Identities=20%  Similarity=0.471  Sum_probs=44.1

Q ss_pred             CCCCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..+++..|+||++.+.++   ..+ +|+|.||..||++|++.+.+||+||+++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH   61 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence            346678999999999886   455 89999999999999999999999999875

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.36  E-value=3.4e-13  Score=99.71  Aligned_cols=49  Identities=37%  Similarity=0.840  Sum_probs=43.5

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +++.+|+||++.+.++  ...+||+|.||.+||++|++.+.+||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            4567899999998764  478899999999999999999999999999875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.3e-13  Score=101.29  Aligned_cols=48  Identities=35%  Similarity=1.007  Sum_probs=43.4

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++.+|+||++.+.+    ..+||+|.||.+||++|++.+.+||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            3567899999999877    67999999999999999999999999999875

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=101.25  Aligned_cols=53  Identities=26%  Similarity=0.622  Sum_probs=45.9

Q ss_pred             CCCCCCcccccccccccCCc-eEEeCCCCcccHHHHHHHHhcC---CCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEE-VRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~-vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~  335 (336)
                      ...++.+|+||++.|.+++. .+.+||+|.||.+||++|++.+   .+||+||+++.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            44667899999999998664 6788999999999999999876   78999999764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=9.8e-13  Score=100.86  Aligned_cols=50  Identities=22%  Similarity=0.487  Sum_probs=44.2

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...++..|+||++.+.++   ..+||+|.||..||.+|++.+.+||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             cCCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            345677999999999886   57899999999999999999999999999864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=98.11  Aligned_cols=50  Identities=24%  Similarity=0.567  Sum_probs=43.7

Q ss_pred             CCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCccccCcCc
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL  334 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I  334 (336)
                      ....++..|+||++.+.++   ..+| |+|.||..||++|++.+  .+||+||+++
T Consensus        10 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   62 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   62 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred             ccCCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence            3446778999999999987   6799 99999999999999876  6899999975

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=95.90  Aligned_cols=49  Identities=18%  Similarity=0.473  Sum_probs=42.6

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHH-hcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL-RILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL-~~~~tCPlCR~~I~  335 (336)
                      ..++..|+||++.+.++   ..++|+|.||.+||++|+ +.+.+||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV   61 (66)
T ss_dssp             CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred             CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence            35678999999999887   447999999999999999 45689999999875

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.9e-12  Score=96.90  Aligned_cols=49  Identities=35%  Similarity=0.689  Sum_probs=42.8

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~~I~  335 (336)
                      ..++.+|+||++.+.++   ..+||+|.||.+||.+|++   .+.+||+||+++.
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence            45678999999999876   6779999999999999997   4568999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.29  E-value=2.7e-13  Score=112.19  Aligned_cols=49  Identities=33%  Similarity=0.744  Sum_probs=1.0

Q ss_pred             CCCcccccccccccC-------------C--ceEEeCCCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          286 EDPECCICLAKYKEK-------------E--EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~-------------~--~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      +++.|+||+++|+++             +  .+..++|+|.||..||++||+.+.+||+||+++
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             CC--------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            457899999999863             2  233458999999999999999999999999974

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.25  E-value=1.7e-12  Score=109.68  Aligned_cols=47  Identities=28%  Similarity=0.879  Sum_probs=42.8

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++..|+||++.|.++   ..+||||.||..||.+|++.+.+||+||+++.
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            456899999999887   77899999999999999999999999999874

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=8.1e-12  Score=95.51  Aligned_cols=49  Identities=29%  Similarity=0.611  Sum_probs=43.5

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~  335 (336)
                      ..++.+|+||++.+.++   ..+||+|.||..||.+|++.      +..||+||.++.
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            45678999999999887   57899999999999999987      678999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.23  E-value=3.9e-12  Score=105.01  Aligned_cols=51  Identities=25%  Similarity=0.699  Sum_probs=45.8

Q ss_pred             CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .++.+|+||++.|.++    +....++|||.||.+||++|++.+.+||+||+.+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence            5678999999999875    55688999999999999999999999999999875

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.22  E-value=7e-12  Score=95.16  Aligned_cols=49  Identities=20%  Similarity=0.392  Sum_probs=44.0

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      ..++..|+||++.+.++   ..+||||.||..||.+|++. +.+||+||.++.
T Consensus         5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            45788999999999887   67899999999999999987 789999999874

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=90.22  Aligned_cols=44  Identities=36%  Similarity=0.725  Sum_probs=39.0

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHh---cCCCcccc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR---ILSCCPLC  330 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlC  330 (336)
                      .+++.+|+||++.+.++   ..+||+|.||.+||++|++   .+.+||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            45678999999999987   6789999999999999998   45689998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=9.1e-12  Score=95.22  Aligned_cols=49  Identities=29%  Similarity=0.657  Sum_probs=43.3

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc------CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI------LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~I~  335 (336)
                      ..++.+|+||++.+.++   ..+||+|.||.+||.+|++.      +..||+||..+.
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            45678999999999887   56799999999999999987      789999999875

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.22  E-value=2.2e-12  Score=97.83  Aligned_cols=49  Identities=29%  Similarity=0.590  Sum_probs=43.0

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-------CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-------LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~  335 (336)
                      ..++.+|+||++.+.++   ..+||+|.||.+||.+|++.       +.+||+||.++.
T Consensus         9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            45678999999999887   55899999999999999987       678999999874

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=88.51  Aligned_cols=44  Identities=30%  Similarity=0.775  Sum_probs=38.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHH---hcCCCcccc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---RILSCCPLC  330 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL---~~~~tCPlC  330 (336)
                      ..++..|+||++.+.++   ..++|+|.||.+||++|+   +.+.+||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            45678999999999987   568999999999999995   456889998

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.18  E-value=6.4e-12  Score=100.47  Aligned_cols=48  Identities=31%  Similarity=0.799  Sum_probs=42.4

Q ss_pred             CCCCcccccccccccCCceEE-eCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~-LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      .++..|+||++.+.++   .. ++|+|.||..||.+|++.+ .+||+||.++.
T Consensus        20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence            3567899999999876   56 8999999999999999987 79999999874

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-11  Score=93.20  Aligned_cols=52  Identities=21%  Similarity=0.511  Sum_probs=43.9

Q ss_pred             CCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCccccCcCcC
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPLCKQELE  335 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~I~  335 (336)
                      ...+...+|+||.+.+..++...  .|+|.||..||++||+.+  .+||+||.+.+
T Consensus        10 ~y~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           10 TYPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CCSSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             hccCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            34456689999999999875443  799999999999999987  89999998763

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.16  E-value=1e-11  Score=98.66  Aligned_cols=47  Identities=23%  Similarity=0.614  Sum_probs=42.0

Q ss_pred             CCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++..|+||++.|.++   ..+ +|||.||..||.+|++.+.+||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   68 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT   68 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence            467899999999886   555 89999999999999999999999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.8e-11  Score=89.80  Aligned_cols=50  Identities=28%  Similarity=0.548  Sum_probs=41.3

Q ss_pred             CCCccccccc-ccccCCce-EEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          286 EDPECCICLA-KYKEKEEV-RKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~-~f~~~~~v-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      ++..|+||++ .+.++... ..++|||.||.+||++|+.. +.+||+||+++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence            4678999999 77777543 45789999999999999765 478999999875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=94.83  Aligned_cols=50  Identities=24%  Similarity=0.567  Sum_probs=43.6

Q ss_pred             CCCCCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC--CCccccCcCc
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL--SCCPLCKQEL  334 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~I  334 (336)
                      ....++..|+||++.+.++   ..+| |+|.||..||.+|++.+  .+||+||.++
T Consensus         8 ~~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             ccCCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3446788999999999988   7899 99999999999999754  5899999986

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.14  E-value=1.9e-11  Score=98.73  Aligned_cols=48  Identities=23%  Similarity=0.690  Sum_probs=42.7

Q ss_pred             CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .++..|+||++.+.++   ..+ +|||.||..||.+|++.+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH   61 (108)
T ss_dssp             GGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred             CCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence            4577999999999876   555 99999999999999999999999999874

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.13  E-value=2.3e-11  Score=100.32  Aligned_cols=51  Identities=25%  Similarity=0.699  Sum_probs=45.1

Q ss_pred             CCCCcccccccccccC----CceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEK----EEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +++.+|+||++.++++    .....++|+|.||..||++|++.+.+||+||.++.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            5678899999999874    34578899999999999999999999999999885

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.11  E-value=2.4e-11  Score=100.50  Aligned_cols=48  Identities=25%  Similarity=0.531  Sum_probs=41.9

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      .++..|+||++.+.++   ..+||||.||..||.+|++.+ .+||+||.++.
T Consensus        50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   98 (124)
T 3fl2_A           50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG   98 (124)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence            3467899999999987   678999999999999999865 49999999874

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.10  E-value=5.1e-11  Score=103.21  Aligned_cols=78  Identities=23%  Similarity=0.350  Sum_probs=51.9

Q ss_pred             CCCCCHHHHhcCCCceeeccccccccCCCCCCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccC
Q 019720          253 DKGASDDQISRLPSWRYKRVDSNLEAGNSAPANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCK  331 (336)
Q Consensus       253 ~~g~s~~~i~~Lp~~k~~~~~~~~~~~~~~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR  331 (336)
                      ..+.+...+.+.+........+  .........++..|+||++.+.++  +..+||+|.||..||++|++. +.+||+||
T Consensus        22 ~~~l~~~~~~r~~~~~~~~~~~--~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr   97 (165)
T 2ckl_B           22 TWELSLYELQRTPQEAITDGLE--IVVSPRSLHSELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCR   97 (165)
T ss_dssp             CCCCCHHHHHCCCCCCCCSCCE--EC----CCHHHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTC
T ss_pred             cccCCHHHHhcCchhhhccccc--cccchhhCCCCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCC
Confidence            3455666666655432222111  111122234567999999999875  333499999999999999987 78999999


Q ss_pred             cCc
Q 019720          332 QEL  334 (336)
Q Consensus       332 ~~I  334 (336)
                      .++
T Consensus        98 ~~~  100 (165)
T 2ckl_B           98 KKL  100 (165)
T ss_dssp             CBC
T ss_pred             CcC
Confidence            987

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.06  E-value=4.5e-11  Score=96.47  Aligned_cols=47  Identities=36%  Similarity=0.701  Sum_probs=40.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC---CccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS---CCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~---tCPlCR~~I~  335 (336)
                      ++.+|+||++.+.++   ..+||+|.||..||.+|++.+.   +||+||.++.
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            456899999999887   4579999999999999998754   8999999874

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.03  E-value=2.9e-11  Score=98.59  Aligned_cols=48  Identities=27%  Similarity=0.748  Sum_probs=42.5

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQEL  334 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I  334 (336)
                      ..++..|+||++.+.++   ..+||+|.||..||.+|++. +.+||+||..+
T Consensus        12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~   60 (115)
T 3l11_A           12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV   60 (115)
T ss_dssp             CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred             CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence            35678999999999987   67899999999999999976 67899999976

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.02  E-value=1e-10  Score=95.97  Aligned_cols=49  Identities=31%  Similarity=0.590  Sum_probs=43.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~  335 (336)
                      ..++..|+||++.+.++   ..++|+|.||..||.+|++.+. +||+||.++.
T Consensus        15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (118)
T 3hct_A           15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (118)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence            35678999999999887   6689999999999999998765 9999999874

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.00  E-value=1.1e-10  Score=85.98  Aligned_cols=48  Identities=23%  Similarity=0.546  Sum_probs=41.7

Q ss_pred             CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +++.+|.||++...+.   ..+  ||||. |+.+|+++|.+.+..||+||++++
T Consensus         6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            4677899999987665   445  99999 899999999999999999999885

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=99.56  Aligned_cols=47  Identities=19%  Similarity=0.508  Sum_probs=41.6

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC-CccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS-CCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~I~  335 (336)
                      ++..|+||++.+.++   ..+||+|.||..||.+|++.+. +||+||.++.
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  124 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG  124 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence            457899999999887   6689999999999999998764 8999999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.99  E-value=3.7e-10  Score=87.82  Aligned_cols=49  Identities=14%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++..|+||++-+.++   ..+||||.|++.||.+|+..+.+||+||.++.
T Consensus        11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            45788999999999999   78999999999999999999999999999874

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.99  E-value=1.3e-10  Score=94.81  Aligned_cols=47  Identities=26%  Similarity=0.581  Sum_probs=41.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      ++..|+||++.+.++   ..++|||.||..||.+|++. +.+||+||.++.
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence            467899999999887   56899999999999999987 789999999874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.97  E-value=3.2e-10  Score=87.00  Aligned_cols=51  Identities=18%  Similarity=0.452  Sum_probs=40.9

Q ss_pred             CCCCCcccccccccccCCceEEeC--CCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLP--CSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LP--C~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      .+++.+|+||++.+..++. ..+|  |||.||..|+.++++. +..||.||+++.
T Consensus         8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~   61 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   61 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred             cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence            4677899999999865432 3444  9999999999999853 678999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.94  E-value=8.3e-10  Score=88.26  Aligned_cols=49  Identities=16%  Similarity=0.052  Sum_probs=45.0

Q ss_pred             CCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++..|+||++-+.++   ..+||| |.|++.||.+|+..+.+||+||.++.
T Consensus        19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~   68 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence            35788999999999999   789999 99999999999998999999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.94  E-value=1.6e-10  Score=82.78  Aligned_cols=45  Identities=27%  Similarity=0.535  Sum_probs=39.5

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .++..|+||++.|.++   +.|||+|.||..||.+|   +..||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence            5677899999999987   67899999999999883   678999999874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.93  E-value=6.2e-10  Score=89.29  Aligned_cols=49  Identities=14%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++..|+||++-+.++   ..+||||.|++.||.+|+..+.+||+||.++.
T Consensus        26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             CcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence            46788999999999999   78999999999999999998999999999874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.92  E-value=3.3e-10  Score=83.22  Aligned_cols=48  Identities=21%  Similarity=0.593  Sum_probs=41.3

Q ss_pred             CCCCcccccccccccCCceEEe--CCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKL--PCSHM-FHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +.+.+|.||++...+.   ..+  ||||. |+.+|+.+|.+.+..||+||++++
T Consensus         5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            4567899999986664   445  99998 999999999988899999999885

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.89  E-value=9.3e-10  Score=107.76  Aligned_cols=46  Identities=28%  Similarity=0.732  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCceEEeCCCCcccHHHHHHHHh-cCCCccccCcCcC
Q 019720          287 DPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLR-ILSCCPLCKQELE  335 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~I~  335 (336)
                      ..+|+||++.+.++   ..+||||.||..|+.+|++ .+.+||+||.++.
T Consensus       332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~  378 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK  378 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence            46999999998775   7899999999999999998 6889999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.85  E-value=6e-10  Score=94.71  Aligned_cols=48  Identities=19%  Similarity=0.380  Sum_probs=42.2

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQEL  334 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I  334 (336)
                      .+++..|+||++.+.++   ..++|||.||..||.+|++.+ .+||+||.++
T Consensus        28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            35678999999999988   668999999999999999866 4899999864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.84  E-value=1.7e-09  Score=78.88  Aligned_cols=48  Identities=27%  Similarity=0.666  Sum_probs=38.5

Q ss_pred             CCCCcccccccccccCCceEEeCCC--C---cccHHHHHHHHhc--CCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCS--H---MFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      ++...|.||+++.  ++++ .+||+  |   .||.+|+++|++.  +.+||+||.++.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4677899999983  3444 68965  4   9999999999975  688999998764

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.82  E-value=6.1e-10  Score=84.19  Aligned_cols=43  Identities=26%  Similarity=0.688  Sum_probs=38.3

Q ss_pred             CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++..|.||++.+.+.   ..+||+|. ||..|+.+|    .+||+||.++.
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            456899999988775   77899999 999999999    89999999875

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.81  E-value=6e-10  Score=91.25  Aligned_cols=45  Identities=27%  Similarity=0.601  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++..|+||++.|.++   ..+ ||||.||..||.+|++  ..||+||.++.
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            567899999999887   566 8999999999999998  88999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.76  E-value=1.7e-09  Score=103.93  Aligned_cols=52  Identities=35%  Similarity=0.807  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccccCCceE-----EeCCCCcccHHHHHHHHhcC-----------CCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVR-----KLPCSHMFHLKCVDQWLRIL-----------SCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr-----~LPC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~  335 (336)
                      .++..+|+||++.+.++.++-     -.+|+|.||..|+.+||+..           .+||+||++|.
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            456789999999999844332     23599999999999999752           46999999874

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=7.2e-09  Score=77.27  Aligned_cols=48  Identities=25%  Similarity=0.654  Sum_probs=39.7

Q ss_pred             CCCCCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720          282 APANEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       282 ~~~~~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      ....++.+|.||++...+.   ..+||+|. |+.+|+..    ...||+||.+|.+
T Consensus        10 ~~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            3445678999999986654   88999999 99999984    5789999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=9.1e-09  Score=94.85  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=44.0

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      ...++..|+||++-+.++   ..+||||.|++.||.+|+..+ .+||+||.++.
T Consensus       204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            446788999999999999   789999999999999999864 55999999874

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.69  E-value=6.3e-09  Score=90.28  Aligned_cols=49  Identities=31%  Similarity=0.585  Sum_probs=42.9

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      ..++..|+||++.+.++   ..++|||.||..||.+|++.+ .+||+||.++.
T Consensus        15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (170)
T 3hcs_A           15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (170)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence            35678999999999988   668999999999999999764 59999999874

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.69  E-value=7.6e-09  Score=81.72  Aligned_cols=46  Identities=20%  Similarity=0.444  Sum_probs=40.3

Q ss_pred             CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcC------CCccc--cCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRIL------SCCPL--CKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~------~tCPl--CR~~  333 (336)
                      .++..|+||++.|.++   ..+| |||.|++.||.+|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            5678999999999998   7786 99999999999999764      48999  9855

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.64  E-value=5.5e-09  Score=78.95  Aligned_cols=44  Identities=25%  Similarity=0.681  Sum_probs=37.0

Q ss_pred             CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcCC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELER  336 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  336 (336)
                      ++.+|.||++.+.+.   ..+||+|. ||.+|+.+    ...||+||.++++
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence            456899999998776   66899999 99999964    4789999998853

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.57  E-value=2.8e-08  Score=78.05  Aligned_cols=49  Identities=22%  Similarity=0.670  Sum_probs=40.9

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc--------CCCccc--cCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI--------LSCCPL--CKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~--------~~tCPl--CR~~  333 (336)
                      .+..+|+||++++.+++-+...+|+|.||.+|+.++++.        ..+||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            456789999999988766665689999999999999864        237999  9987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.51  E-value=6.4e-08  Score=85.45  Aligned_cols=50  Identities=14%  Similarity=0.153  Sum_probs=44.1

Q ss_pred             CCCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      ...++..|+||++-+.++   ..+||||.|++.||.+|+..+ .+||+|+.++.
T Consensus       102 ~ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~  152 (179)
T 2f42_A          102 EIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT  152 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence            346788999999999998   778999999999999999874 57999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.49  E-value=1.9e-08  Score=77.05  Aligned_cols=43  Identities=28%  Similarity=0.690  Sum_probs=36.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ++..|.||++...+.   ..+||||. |+.+|+.+|    ..||+||.++.
T Consensus        17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   60 (79)
T 2yho_A           17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE   60 (79)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred             CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence            456899999987665   78999999 999999987    49999999875

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.35  E-value=1.7e-07  Score=68.45  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCceEEe-CCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          287 DPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...|+||++.++++   ..+ +|||+|.++||.+|++.+.+||+++.++.
T Consensus         3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            35799999999987   667 79999999999999999899999999874

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.33  E-value=9.4e-08  Score=92.49  Aligned_cols=44  Identities=25%  Similarity=0.736  Sum_probs=39.0

Q ss_pred             CCCCcccccccccccCCceEEeCCCCc-ccHHHHHHHHhcCCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHM-FHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .++..|+||++.+.+.   ..+||||. ||..|+..|    ..||+||.+++
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            3567999999998776   77899999 999999988    78999999885

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.22  E-value=5.8e-07  Score=83.53  Aligned_cols=50  Identities=22%  Similarity=0.503  Sum_probs=41.7

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--CCccc--cCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--SCCPL--CKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~  335 (336)
                      ...+..|+||++.|.++  |+.+.|||.|++.||.+|++.+  .+||+  ||+.+.
T Consensus       178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            45678999999999888  3335899999999999999764  47999  998763

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.99  E-value=3.6e-06  Score=67.02  Aligned_cols=45  Identities=27%  Similarity=0.518  Sum_probs=37.2

Q ss_pred             cccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          289 ECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      -|.+|--.+..  ..|.+||+|+|+.+|+..|.++ .++||.|+.+|+
T Consensus         3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            36777666544  4699999999999999999865 689999999885

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.61  E-value=2.3e-05  Score=72.02  Aligned_cols=48  Identities=23%  Similarity=0.558  Sum_probs=39.6

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC--CccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS--CCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlCR~~I~  335 (336)
                      ...+|.||.+-...|....  .|+|.||..|+++|++.+.  +||.|+.+.+
T Consensus       179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            4678999999999884332  2999999999999998754  8999998753

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.37  E-value=0.025  Score=44.07  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHH
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQW  320 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~W  320 (336)
                      ++..|.||++++..+....-++|+|.|+..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            46789999988655544455899999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.64  E-value=0.067  Score=39.17  Aligned_cols=46  Identities=20%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC----CccccCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS----CCPLCKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~----tCPlCR~~  333 (336)
                      ..+..|.||.+   .++-+.--.|...||..|++..|....    .||.|+..
T Consensus        10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            45678999974   233222222789999999998886542    59999764

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=88.50  E-value=0.38  Score=36.90  Aligned_cols=34  Identities=26%  Similarity=0.748  Sum_probs=25.0

Q ss_pred             CCCCCCcccccccccccCCceEEeC---CCCcccHHHHHHH
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQW  320 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LP---C~H~FH~~CI~~W  320 (336)
                      ....|..|.||- .+..+   ..+|   |+-+||..|+.+=
T Consensus        11 ~~~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           11 PVVNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence            345788999985 33344   3456   6899999999985

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.70  E-value=0.16  Score=36.39  Aligned_cols=49  Identities=27%  Similarity=0.433  Sum_probs=33.9

Q ss_pred             CCCCcccccccccccCCceEEe-CCCCcccHHHHHHHHh-----cCCCccccCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKL-PCSHMFHLKCVDQWLR-----ILSCCPLCKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~  333 (336)
                      +++..|+||...+.++.....= .|..-||..|+.---.     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            5677899999998765433222 2789999999864322     24569999753

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.51  E-value=0.42  Score=34.10  Aligned_cols=47  Identities=23%  Similarity=0.584  Sum_probs=31.7

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCccccCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQE  333 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR~~  333 (336)
                      ..++..|.+|...   ++-+.--.|...||..|++.=+..    .=.||.|++.
T Consensus         8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3567789999863   332222227899999999975543    2359999763

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=83.69  E-value=0.43  Score=32.50  Aligned_cols=46  Identities=26%  Similarity=0.569  Sum_probs=29.4

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcC
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQE  333 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~  333 (336)
                      +.|.||...-+.++-+.--.|...||..|++.=+...    =.||.|+..
T Consensus         1 a~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~   50 (51)
T 1f62_A            1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA   50 (51)
T ss_dssp             CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred             CCCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence            3588998764433322222378999999997644332    249999753

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.59  E-value=0.21  Score=35.00  Aligned_cols=46  Identities=26%  Similarity=0.685  Sum_probs=31.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCc
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQ  332 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~  332 (336)
                      ..++..|.+|...   ++-+.--.|...||..|++.=+...    =.||.|+.
T Consensus         6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            4567789999864   3322222378999999998655432    24999864

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=80.14  E-value=0.42  Score=34.12  Aligned_cols=47  Identities=21%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC----CCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL----SCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~I  334 (336)
                      .++..|.+|...   ++-+.--.|...||..|++.=+...    =.||.|+...
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            467789999752   3222222278999999998655432    2599998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	7e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	9e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-09
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-08
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	8e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 68.7 bits (168), Expect = 7e-16
 Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 286 EDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQEL 334
           +  EC +CLA+ ++ EE R LP C H FH +CVD WL   S CPLC+  +
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 62.3 bits (151), Expect = 2e-13
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELER 336
           A     C ICL           LPC H F   C+ +W+R    CPLCK  +E 
Sbjct: 2   ATVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELER 336
           +    C IC    K+   V+  PC H+    C+  W       CP C+ E++ 
Sbjct: 21  STFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 9e-10
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 286 EDPECCICLAKY---------------KEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLC 330
               C IC                    E+  V    C+H FH  C+ +WL+    CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 331 KQELE 335
            +E E
Sbjct: 80  NREWE 84

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 2e-09
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
           +   C  C A+ K     + LPC H     C++        CP+C+   
Sbjct: 5   QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEASGM---QCPICQAPW 47

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 289 ECCICLAKYKEKEEVRK-LPCSHMFHLKCVDQWLRILS-CCPLCKQELE 335
           EC +C+   +  +       C +     C  +     +  CP C++   
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 286 EDPECCICLAKYKEKEEVRKL--PCSHMFHLKCVDQWLRILS-CCPLCKQELER 336
           +D  C  C         ++ +   C H     CVD      +  CP C   L +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 44.5 bits (104), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)

Query: 286 EDPECCICLAKYKEKEEV--RKLPCSHMFHLKCVDQWLRILSC--CPLCKQE 333
           + P C IC  +   +              H  C+  WL I     C +C   
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 20/69 (28%)

Query: 283 PANEDPECCICL---------------AKYKEKEEVRKLPCSHMFHLKCVDQWLRILSC- 326
               + +C IC+                        R   CSH FHL C+       +  
Sbjct: 21  KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD 80

Query: 327 ----CPLCK 331
               CP CK
Sbjct: 81  GSLQCPSCK 89

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWL---RILSCCPLCKQELER 336
           +  EC ICL   KE        C H+F   C+ + L   +  S CPLCK ++ +
Sbjct: 20  KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 8/56 (14%)

Query: 284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS--------CCPLCK 331
           ++    C +CL +Y  ++      C  +F   C+ Q++ +L          CP   
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 290 CCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQEL 334
           C IC     +     +  C H+F   C+ + L+++ S CP C+   
Sbjct: 26  CQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 8e-04
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQEL 334
            +   C  C    +E   +    C H+F   CV   +     CP+C    
Sbjct: 20  EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGT--GCPVCYTPA 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.69
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.5
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.45
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.45
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.39
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.36
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.21
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.16
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.14
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.11
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.1
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.96
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.91
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.9
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.72
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.46
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.75
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	90.3
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	87.35
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	85.51
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	83.46
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	81.42
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	80.7

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.69  E-value=3.9e-18  Score=121.34  Aligned_cols=50  Identities=48%  Similarity=1.083  Sum_probs=46.7

Q ss_pred             CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I  334 (336)
                      +++.+|+||+++|+++++++.+| |+|.||.+||++|++.+.+||+||++|
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            46678999999999999999886 999999999999999999999999987

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.50  E-value=4.5e-15  Score=109.43  Aligned_cols=48  Identities=38%  Similarity=0.854  Sum_probs=42.7

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ...+|+||++.+.++  .+.+||+|.||.+||.+|++.+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            455799999999764  567899999999999999999999999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.7e-15  Score=102.45  Aligned_cols=48  Identities=17%  Similarity=0.381  Sum_probs=41.4

Q ss_pred             cccccccccccCCce-EEeCCCCcccHHHHHHHHhc-CCCccccCcCcCC
Q 019720          289 ECCICLAKYKEKEEV-RKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELER  336 (336)
Q Consensus       289 ~C~ICL~~f~~~~~v-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~  336 (336)
                      +|+||+++|++++.. ..++|+|.||.+|+++|++. +.+||+||+++++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            799999999887654 55689999999999999986 5679999999864

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.6e-14  Score=110.48  Aligned_cols=50  Identities=32%  Similarity=0.709  Sum_probs=42.6

Q ss_pred             CCCcccccccccccCC---------------ceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKE---------------EVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~---------------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +++.|+||++++.++.               .+..++|+|.||.+||++||+.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3456999998887643               3678899999999999999999999999999763

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.5e-14  Score=101.37  Aligned_cols=50  Identities=24%  Similarity=0.481  Sum_probs=41.1

Q ss_pred             CCCcccccccccccCC--ceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKE--EVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~--~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      ++.+|+||++++..+.  .+..++|+|.||.+||.+|++. +.+||+||+++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            5679999999875443  3466789999999999999965 568999999885

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=104.44  Aligned_cols=47  Identities=28%  Similarity=0.722  Sum_probs=40.9

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      +...|+||++.+.+.   +.+||||.||.+||++||+. +.+||+||++|.
T Consensus        22 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~   69 (79)
T d1fbva4          22 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK   69 (79)
T ss_dssp             CTTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCC
T ss_pred             CCCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCcc
Confidence            445799999988765   78999999999999999975 578999999885

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.4e-13  Score=110.67  Aligned_cols=50  Identities=32%  Similarity=0.554  Sum_probs=40.5

Q ss_pred             CCCCccccccccccc---------------CCceEEeCCCCcccHHHHHHHHhcC-----CCccccCcCc
Q 019720          285 NEDPECCICLAKYKE---------------KEEVRKLPCSHMFHLKCVDQWLRIL-----SCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~---------------~~~vr~LPC~H~FH~~CI~~WL~~~-----~tCPlCR~~I  334 (336)
                      ..+.+|+||++++.+               .+.++.++|+|.||.+||++||+.+     .+||+||..+
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~   92 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY   92 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence            345689999999864               2346778899999999999999753     4899999865

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.9e-12  Score=91.60  Aligned_cols=44  Identities=16%  Similarity=0.273  Sum_probs=40.4

Q ss_pred             cccccccccccCCceEEeC-CCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          289 ECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       289 ~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      .|+||++.++++   ..++ |||+||++||.+||+.+.+||+||+++.
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            599999999987   6675 9999999999999999999999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.8e-12  Score=91.83  Aligned_cols=44  Identities=27%  Similarity=0.570  Sum_probs=38.5

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +..+|+||++.+.++   +.+||+|.||..||++|   +.+||+||+++.
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCccc
Confidence            446899999999887   67899999999999875   678999999874

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.14  E-value=9.1e-12  Score=89.05  Aligned_cols=48  Identities=27%  Similarity=0.691  Sum_probs=39.0

Q ss_pred             CCCCcccccccccccCCceEEeCC-----CCcccHHHHHHHHhc--CCCccccCcCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPC-----SHMFHLKCVDQWLRI--LSCCPLCKQELE  335 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC-----~H~FH~~CI~~WL~~--~~tCPlCR~~I~  335 (336)
                      +++..|.||+++++++   ...||     +|.||..||++|+..  +.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            5678999999998765   33454     499999999999954  578999999864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.5e-11  Score=94.42  Aligned_cols=47  Identities=26%  Similarity=0.631  Sum_probs=41.2

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      ++..|+||++.+.++   ..++|||.||..||.+|++.+ .+||.||.++.
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCC
Confidence            346899999999887   789999999999999999754 68999999864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-11  Score=97.10  Aligned_cols=47  Identities=38%  Similarity=0.716  Sum_probs=40.6

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC---CCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL---SCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~I~  335 (336)
                      +..+|+||++.++++   ..+||||.||..||.+|++.+   ..||+||.++.
T Consensus        20 ~~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            345799999999887   568999999999999999765   47999999874

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=2.2e-10  Score=86.16  Aligned_cols=49  Identities=14%  Similarity=0.127  Sum_probs=43.6

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc-CCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI-LSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  335 (336)
                      ..++..|+||++-+.++   ..+||||.|++.||.+|+.. +.+||.||.++.
T Consensus         4 iP~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           4 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             CCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CCccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            36788999999999998   67999999999999999975 568999999874

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.91  E-value=4.5e-10  Score=83.97  Aligned_cols=49  Identities=20%  Similarity=0.375  Sum_probs=43.7

Q ss_pred             CCCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC-CCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL-SCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~I~  335 (336)
                      ..++..|+||++.+.++   ..++|||.|+++||.+|++.+ .+||.|+.++.
T Consensus         5 iP~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~   54 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             CCccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCC
Confidence            45788999999999998   678999999999999999875 67999999874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=8.8e-11  Score=91.57  Aligned_cols=46  Identities=26%  Similarity=0.556  Sum_probs=38.0

Q ss_pred             CCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcCCCccccCcCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      +..+|+||++.|.++  +...+|||.||..||.+|++  ..||.||.++.
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hcCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCc
Confidence            356899999999887  33347999999999999985  45999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5e-09  Score=81.81  Aligned_cols=49  Identities=16%  Similarity=0.052  Sum_probs=44.1

Q ss_pred             CCCCCcccccccccccCCceEEeCCC-CcccHHHHHHHHhcCCCccccCcCcC
Q 019720          284 ANEDPECCICLAKYKEKEEVRKLPCS-HMFHLKCVDQWLRILSCCPLCKQELE  335 (336)
Q Consensus       284 ~~~~~~C~ICL~~f~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~I~  335 (336)
                      ..++..|+||++-+.++   .++||+ |.|++.||.+||+.+.+||+||.++.
T Consensus        19 ~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~   68 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             CcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCccccccccc
Confidence            45689999999999999   789976 57999999999999999999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3e-08  Score=76.08  Aligned_cols=47  Identities=23%  Similarity=0.636  Sum_probs=38.3

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhcC--------CCccccC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRIL--------SCCPLCK  331 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~--------~tCPlCR  331 (336)
                      ....+|+||++++..++....++|+|.||.+|+.+|++.+        -+||.|+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4567899999999887777777899999999999999631        2599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.028  Score=36.98  Aligned_cols=45  Identities=27%  Similarity=0.609  Sum_probs=29.8

Q ss_pred             CcccccccccccCCceEEeCCCCcccHHHHHHHHhcCC----CccccCc
Q 019720          288 PECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRILS----CCPLCKQ  332 (336)
Q Consensus       288 ~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~~~----tCPlCR~  332 (336)
                      +.|.||-..-++++-+.-=.|...||.+|++.-+....    .||.||.
T Consensus         1 a~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            46889976643332221112789999999998765432    4999985

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.094  Score=38.25  Aligned_cols=34  Identities=26%  Similarity=0.779  Sum_probs=26.8

Q ss_pred             CCCCCCcccccccccccCCceEEeC---CCCcccHHHHHHH
Q 019720          283 PANEDPECCICLAKYKEKEEVRKLP---CSHMFHLKCVDQW  320 (336)
Q Consensus       283 ~~~~~~~C~ICL~~f~~~~~vr~LP---C~H~FH~~CI~~W  320 (336)
                      ....|..|.|| +.+...+   .+|   |+.+||..|+++=
T Consensus        11 ~v~~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence            34678899999 7776663   457   6899999999886

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.35  E-value=0.21  Score=35.24  Aligned_cols=45  Identities=29%  Similarity=0.718  Sum_probs=26.7

Q ss_pred             CCCCcccccccccccCCceEEeC---CC-CcccHHHHHHHHhc----CCCccccCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP---CS-HMFHLKCVDQWLRI----LSCCPLCKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP---C~-H~FH~~CI~~WL~~----~~tCPlCR~~  333 (336)
                      +++..++||..... ++ ....-   |. .-||..|+.  |+.    +-.||.|+..
T Consensus        13 ~~e~~~CiC~~~~~-~~-~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~   65 (71)
T d1wesa_          13 PNEPTYCLCNQVSY-GE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGD   65 (71)
T ss_dssp             SSSCCCSTTCCCCC-SS-EECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred             CCCCCEEEeCCCCC-CC-EEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccc
Confidence            34446679987643 32 22222   33 469999985  333    2359999864

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.51  E-value=0.68  Score=32.78  Aligned_cols=48  Identities=25%  Similarity=0.515  Sum_probs=31.9

Q ss_pred             CCCcccccccccccCCceEEeC-CCCcccHHHHH--HH-Hhc--CCCccccCcC
Q 019720          286 EDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVD--QW-LRI--LSCCPLCKQE  333 (336)
Q Consensus       286 ~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~--~W-L~~--~~tCPlCR~~  333 (336)
                      ....|+||...+++++....=. |+--||..|+.  .. ...  +-.||.|+..
T Consensus        10 ~~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~   63 (79)
T d1wepa_          10 LVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV   63 (79)
T ss_dssp             CCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred             cCCeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCC
Confidence            3457779998876665433222 78999999995  22 222  3579999864

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.46  E-value=0.24  Score=33.69  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CCCCcccccccccccCCceEEeC-CCCcccHHHHHHHH---h--cCCCccccCcC
Q 019720          285 NEDPECCICLAKYKEKEEVRKLP-CSHMFHLKCVDQWL---R--ILSCCPLCKQE  333 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LP-C~H~FH~~CI~~WL---~--~~~tCPlCR~~  333 (336)
                      .++..|.+|...+++++....=. |+..||..|++.=.   .  .+-.||.|+..
T Consensus         4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            45678999999887776543222 89999999996321   1  13469999753

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=0.17  Score=34.38  Aligned_cols=47  Identities=21%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             CCCCcccccccccccCCceEEeCCCCcccHHHHHHHHhc----CCCccccCcCc
Q 019720          285 NEDPECCICLAKYKEKEEVRKLPCSHMFHLKCVDQWLRI----LSCCPLCKQEL  334 (336)
Q Consensus       285 ~~~~~C~ICL~~f~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR~~I  334 (336)
                      .++..|.+|.+   .++-+.-=.|.-.||..|++.-++.    .-.||.|+..-
T Consensus         7 ~~~~~C~~C~~---~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           7 HHMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCcCCCcCCCC---CCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            34557999974   3432221127899999999866543    23599998654

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.70  E-value=0.12  Score=37.69  Aligned_cols=47  Identities=15%  Similarity=0.494  Sum_probs=29.4

Q ss_pred             CCcccccccccccCC-ceEEe-CCCCcccHHHHHHHH-----hc---CCCccccCcC
Q 019720          287 DPECCICLAKYKEKE-EVRKL-PCSHMFHLKCVDQWL-----RI---LSCCPLCKQE  333 (336)
Q Consensus       287 ~~~C~ICL~~f~~~~-~vr~L-PC~H~FH~~CI~~WL-----~~---~~tCPlCR~~  333 (336)
                      ...|.||.....+.. .+..= -|...||..|++..+     +.   .-.||.|+..
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCch
Confidence            467999986544322 22211 178999999987443     22   2359999753