Citrus Sinensis ID: 019727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MSRKSRGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVASQSSQSESLTSDHCSDDSDNELDEATSTLEDVDEKVPGLKLGYDDVPKSEAAMAKQVQ
cccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHccHHHHccEEEEcccccHHHHHHHccccccHHccccEEEEccccccHHHHHHccccccccccccccccccccccHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcc
cccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHccEcccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHccccHHcEEEEEcccHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHccHHHcHHHHcccccccccHHHccccccccccccccHHHcccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcc
msrksrgfgaekslspeEQQAKINEVRKIIgpiadkypvlcsdeSISRYLRARNWHTKKASKMLVESVKWRleykpekivWEDVAREAetgklyranfcdklgrpvlimrpgfqnsssteGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNhyperlglailynppkvfeSFWTVvkpflepktykkvrfaysndpqsQKIMEALFDINkldssfggrsrvgfdyeAFGQlmraddkkksdlmnsgcsvptdhllvasqssqsesltsdhcsddsdnelDEATStledvdekvpglklgyddvpkSEAAMAKQVQ
msrksrgfgaekslspeeqQAKINEVRKIIGPIADKYPVLCSDESISRYLrarnwhtkkasKMLVESVKWrleykpekivweDVAReaetgklyranfCDKLGRPVLIMrpgfqnssstEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVASQSSQSESLTSDHCSDDSDNELDEATstledvdekvpglklgyddvpksEAAMAKQVQ
MSRKSRGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVAsqssqsesltsDHCSDDSDNELDEATSTLEDVDEKVPGLKLGYDDVPKSEAAMAKQVQ
************************EVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSND***QKIMEALFDINKLDSSFGGRSRVGFDYEAFGQL************************************************************************************
*********************KINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKK**DL*************************************************************************
*****************EQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLV**************************TSTLEDVDEKVPGLKLGYDDVPKS*********
***********KSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSV******************************************************************
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MSRKSRGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVASQSSQSESLTSDHCxxxxxxxxxxxxxxxxxxxxxVPGLKLGYDDVPKSEAAMAKQVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q9UU991008 CRAL-TRIO domain-containi yes no 0.586 0.195 0.342 3e-27
Q55CU8364 Random slug protein 5 OS= no no 0.717 0.662 0.276 1e-25
P53860351 Phosphatidylinositol tran yes no 0.666 0.638 0.273 1e-21
P53844350 Phosphatidylinositol tran no no 0.622 0.597 0.311 2e-20
Q9VMD6 659 Protein real-time OS=Dros yes no 0.574 0.292 0.293 1e-17
Q757H2436 Phosphatidylinositol tran no no 0.586 0.451 0.267 2e-17
Q29JQ0 669 Protein real-time OS=Dros yes no 0.601 0.301 0.293 3e-17
P45816 492 SEC14 cytosolic factor OS no no 0.648 0.443 0.289 5e-15
P24859301 SEC14 cytosolic factor OS no no 0.681 0.760 0.307 6e-15
Q10138444 CRAL-TRIO domain-containi no no 0.589 0.445 0.260 6e-14
>sp|Q9UU99|YJX4_SCHPO CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC23B6.04c PE=1 SV=1 Back     alignment and function desciption
 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 10/207 (4%)

Query: 44  ESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLG 103
           E I RYLRA  WH   A K +V+++ WR  +    +  +++  E  TGK     + DK G
Sbjct: 636 ECILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDG 694

Query: 104 RPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGS-VSVKV 162
           RP L + P  QN+ ++  QI++LV+ +E AI  + P  E +  LI+F+  +  S  SV  
Sbjct: 695 RPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQ 754

Query: 163 TRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKI 222
            +E  N+LQ HY ERLG A++ N P     F+ ++ PF++P T +K++F   N+P     
Sbjct: 755 GKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKF---NEP----- 806

Query: 223 MEALFDINKLDSSFGGRSRVGFDYEAF 249
           ++     ++LDS+FGG     + +E +
Sbjct: 807 LDRYVPKDQLDSNFGGSLHFEYHHEKY 833

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1 Back     alignment and function description
>sp|P53860|PDR16_YEAST Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDR16 PE=1 SV=1 Back     alignment and function description
>sp|P53844|PDR17_YEAST Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDR17 PE=1 SV=1 Back     alignment and function description
>sp|Q9VMD6|RETM_DROME Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2 Back     alignment and function description
>sp|Q757H2|CSR1_ASHGO Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSR1 PE=3 SV=2 Back     alignment and function description
>sp|Q29JQ0|RETM_DROPS Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1 Back     alignment and function description
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q10138|YAS2_SCHPO CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.02 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
224123958345 predicted protein [Populus trichocarpa] 0.970 0.944 0.668 1e-125
359480937317 PREDICTED: random slug protein 5 [Vitis 0.922 0.977 0.615 1e-119
449453810328 PREDICTED: random slug protein 5-like [C 0.931 0.954 0.624 1e-111
116780111352 unknown [Picea sitchensis] 0.979 0.934 0.552 1e-103
388496504330 unknown [Lotus japonicus] 0.895 0.912 0.603 1e-103
359492838361 PREDICTED: random slug protein 5 [Vitis 0.764 0.711 0.661 1e-100
356506174285 PREDICTED: random slug protein 5-like [G 0.800 0.943 0.638 1e-100
357509005326 CRAL-TRIO domain-containing protein [Med 0.883 0.911 0.567 2e-99
357489429332 Clavesin [Medicago truncatula] gi|355516 0.872 0.882 0.592 3e-99
356548200333 PREDICTED: random slug protein 5-like [G 0.889 0.897 0.605 6e-99
>gi|224123958|ref|XP_002319206.1| predicted protein [Populus trichocarpa] gi|222857582|gb|EEE95129.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/332 (66%), Positives = 262/332 (78%), Gaps = 6/332 (1%)

Query: 3   RKSRGFGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASK 62
           RK +G   EKSLS +EQ AKIN+VRKI+GP+ADK PVLCSD SISRYLRARNW+TKKA+K
Sbjct: 4   RKLQGSSTEKSLSEQEQLAKINDVRKILGPVADKLPVLCSDASISRYLRARNWNTKKAAK 63

Query: 63  MLVESVKWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQ 122
           ML  ++KWRLE+KPEKI WED+A EAETGK+YRAN+ DK GR VLI RPGFQN+S   GQ
Sbjct: 64  MLKNTLKWRLEFKPEKIRWEDIANEAETGKVYRANYLDKKGRTVLIFRPGFQNTSGIRGQ 123

Query: 123 IKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAI 182
           I++LVYCMENAI  LNPD++QMVWLIDFQGWTM  +SVK  RETA++LQNHYPERLG+ I
Sbjct: 124 IRHLVYCMENAITTLNPDQDQMVWLIDFQGWTMSCISVKAARETAHILQNHYPERLGVGI 183

Query: 183 LYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRV 242
           LYNPPKVFESFWT+VKPF+EPKTYKKV F YSN PQSQK+ME LFD++KLD +FGGR+  
Sbjct: 184 LYNPPKVFESFWTLVKPFIEPKTYKKVSFVYSNGPQSQKLMEELFDMDKLDCAFGGRNSA 243

Query: 243 GFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVASQSSQSESLTSDHCS----DDSDN 298
           GF+YEA+ Q MR DDKKK D+MN G S P   ++  SQS  SE+LT    S    +D  +
Sbjct: 244 GFNYEAYAQWMREDDKKKFDMMNCGSSSPLPSIMSESQS--SETLTPSGISMASDEDDSS 301

Query: 299 ELDEATSTLEDVDEKVPGLKLGYDDVPKSEAA 330
             DE T  LE++DEK  GL L  +DV  SEA 
Sbjct: 302 SGDEKTLNLENIDEKTQGLPLSGEDVAVSEAV 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480937|ref|XP_002270751.2| PREDICTED: random slug protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453810|ref|XP_004144649.1| PREDICTED: random slug protein 5-like [Cucumis sativus] gi|449516477|ref|XP_004165273.1| PREDICTED: random slug protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|116780111|gb|ABK21555.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|388496504|gb|AFK36318.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359492838|ref|XP_002284219.2| PREDICTED: random slug protein 5 [Vitis vinifera] gi|302141931|emb|CBI19134.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356506174|ref|XP_003521862.1| PREDICTED: random slug protein 5-like [Glycine max] Back     alignment and taxonomy information
>gi|357509005|ref|XP_003624791.1| CRAL-TRIO domain-containing protein [Medicago truncatula] gi|355499806|gb|AES81009.1| CRAL-TRIO domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357489429|ref|XP_003615002.1| Clavesin [Medicago truncatula] gi|355516337|gb|AES97960.1| Clavesin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548200|ref|XP_003542491.1| PREDICTED: random slug protein 5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2138606301 AT4G08690 "AT4G08690" [Arabido 0.866 0.966 0.541 5.4e-86
TAIR|locus:2015066314 AT1G22180 "AT1G22180" [Arabido 0.767 0.821 0.617 3e-85
TAIR|locus:2025202296 AT1G75170 "AT1G75170" [Arabido 0.747 0.847 0.5 4.9e-69
TAIR|locus:2115320294 AT4G36640 [Arabidopsis thalian 0.720 0.823 0.493 9.7e-64
DICTYBASE|DDB_G0293606351 DDB_G0293606 "cellular retinal 0.607 0.581 0.361 7.7e-32
ASPGD|ASPL0000000837414 AN6853 [Emericella nidulans (t 0.622 0.504 0.324 1.9e-28
UNIPROTKB|G4NEY9403 MGG_00707 "CRAL/TRIO domain-co 0.535 0.446 0.369 1.9e-28
DICTYBASE|DDB_G0269182364 rsc5 "cellular retinaldehyde-b 0.714 0.659 0.278 1.3e-27
POMBASE|SPCC23B6.04c1008 SPCC23B6.04c "sec14 cytosolic 0.586 0.195 0.342 1.7e-25
CGD|CAL0001086369 PDR16 [Candida albicans (taxid 0.616 0.560 0.326 5.9e-25
TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 158/292 (54%), Positives = 208/292 (71%)

Query:     9 GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESV 68
             G  K +  EE+QAKI EVRK++GP+ +K    CSD+++ RYLRARNWH KKA+KML E++
Sbjct:     9 GFVKPVPTEEEQAKIEEVRKLLGPLPEKLSSFCSDDAVLRYLRARNWHVKKATKMLKETL 68

Query:    69 KWRLEYKPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVY 128
             KWR++YKPE+I WE+VA EAETGK+YR++  DKLGRPVLIMRP  +NS S +GQI+YLVY
Sbjct:    69 KWRVQYKPEEICWEEVAGEAETGKIYRSSCVDKLGRPVLIMRPSVENSKSVKGQIRYLVY 128

Query:   129 CMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPK 188
             CMENA+ NL P  EQMVW+IDF G+++ +VS++ T+ETA+VLQ HYPERL  A+LYNPPK
Sbjct:   129 CMENAVQNLPPGEEQMVWMIDFHGYSLANVSLRTTKETAHVLQEHYPERLAFAVLYNPPK 188

Query:   189 VFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEA 248
              FE FW V +PFLEPKT  KV+F YS+DP ++ IME  FD+ K++ +FGG    GF+ E 
Sbjct:   189 FFEPFWKVARPFLEPKTRNKVKFVYSDDPNTKVIMEENFDMEKMELAFGGNDDSGFNIEK 248

Query:   249 FGQLMRADDKKKSDLMNSGCSVPTDHLLVAXXXXXXXXXXXDHCSDD-SDNE 299
               + M+ DDKK+   +    S   D L +               S D S++E
Sbjct:   249 HSERMKEDDKKRLASLEGIVSASLDSLSILSVSDGTASNSAHPSSHDVSEDE 300
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0042546 "cell wall biogenesis" evidence=RCA
TAIR|locus:2015066 AT1G22180 "AT1G22180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025202 AT1G75170 "AT1G75170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115320 AT4G36640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293606 DDB_G0293606 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000000837 AN6853 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NEY9 MGG_00707 "CRAL/TRIO domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269182 rsc5 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC23B6.04c SPCC23B6.04c "sec14 cytosolic factor family (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0001086 PDR16 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
smart00516158 smart00516, SEC14, Domain in homologues of a S 3e-38
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 4e-37
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 5e-34
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 2e-09
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-07
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 2e-05
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  133 bits (336), Expect = 3e-38
 Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 11/159 (6%)

Query: 87  EAETGKLYRANFC--DKLGRPVLIMRPG--FQNSSSTEGQIKYLVYCMENAI--MNLNPD 140
           E E  K Y       DK GRPVLI R G     S + E  ++YLVY +E  +        
Sbjct: 1   ELELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGG 60

Query: 141 REQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPF 200
            E    + D +G +M +  + V R+   +LQ+HYPERLG   + NPP  F   W ++KPF
Sbjct: 61  IEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPF 120

Query: 201 LEPKTYKKVRFAYSNDPQS-QKIMEALFDINKLDSSFGG 238
           L+ KT +K+RF  ++  +   + +    D  +L    GG
Sbjct: 121 LDEKTREKIRFVGNDSKEELLEYI----DKEQLPEELGG 155

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.94
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.66
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.93
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.67
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 83.69
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 83.53
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-48  Score=352.54  Aligned_cols=237  Identities=45%  Similarity=0.793  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCCCC-ccchhhHHHHhhCceEec
Q 019727           18 EQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEK-IVWEDVAREAETGKLYRA   96 (336)
Q Consensus        18 ~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~-i~~~~~~~~l~~g~~~~~   96 (336)
                      +..+++.+++..+++...+...+++|..++|||||++|||++|.+||.+++.||+.+++.. +.++++..++++|.+|++
T Consensus        24 ~~~~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~  103 (324)
T KOG1470|consen   24 ESLDKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYIL  103 (324)
T ss_pred             HHHHHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEe
Confidence            3336889999999888777778899999999999999999999999999999999999998 888899999999999999


Q ss_pred             cccCCCCCcEEEEc--cCCCCCCCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHHhhc
Q 019727           97 NFCDKLGRPVLIMR--PGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHY  174 (336)
Q Consensus        97 g~~Dk~GrpV~i~~--~~~~d~~~~~~~~~~~~~~lE~~~~~~~~~~~~~vvI~D~~g~s~~~~~~~~~~~~~~~lq~~Y  174 (336)
                      | +|++||||+|++  ++.....+..++.++++|+||.++..++.++++++++||+.|+|++|++++..+.+++++|+||
T Consensus       104 G-~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hY  182 (324)
T KOG1470|consen  104 G-HDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHY  182 (324)
T ss_pred             c-ccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhC
Confidence            9 899999999995  4555667889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCCcCCcchhcCCCCCCCCChHHHHhhhh
Q 019727          175 PERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMR  254 (336)
Q Consensus       175 Pe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~~  254 (336)
                      |+||+..+|+|+||+|..+|+++||||++.|++||+|+.+.     ..|.+|||+++||..|||+....|.++.+|..|.
T Consensus       183 PErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~-----~~l~~~~d~~~l~s~~GG~~~~~y~~e~~~~~~~  257 (324)
T KOG1470|consen  183 PERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK-----DDLSEYFDESQLPSLFGGKLLFEYTHEEYWPQMK  257 (324)
T ss_pred             hHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh-----hHHHhhCCccccchhhCCCcccccCCcchhhhhh
Confidence            99999999999999999999999999999999999999763     4599999999999999999999999999999999


Q ss_pred             hcchhh
Q 019727          255 ADDKKK  260 (336)
Q Consensus       255 ~~d~~~  260 (336)
                      +++...
T Consensus       258 ~~~~~~  263 (324)
T KOG1470|consen  258 EDDSSL  263 (324)
T ss_pred             hhHHHH
Confidence            888633

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 8e-23
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-13
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 1e-11
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 2e-11
3hy5_A316 Crystal Structure Of Cralbp Length = 316 1e-09
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 4e-08
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 1e-07
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 5e-07
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-04
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-04
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure 
Iteration: 1

 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 129/249 (51%), Gaps = 25/249 (10%)
Query: 30  IGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEY--------KPEKIVW 81
           + P+ ++     + E   RYLRA  W  K     +  ++ WR E+          +KI  
Sbjct: 74  LKPLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITA 133
Query: 82  EDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDR 141
           + VA E E+GK     + +   RP+L ++PG QN+ ++  Q+++LV+ +E  I  +   +
Sbjct: 134 DLVAVENESGKQVILGYEND-ARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQ 192
Query: 142 EQMVWLIDFQGW-----TMGSVSVK---VTRETANVLQNHYPERLGLAILYNPPKVFESF 193
           + +  LIDF+ +       G+  +    V +E  ++LQ HYPERLG A+L N P +  +F
Sbjct: 193 DSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTF 252
Query: 194 WTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLM 253
             ++ PF++P T +K+ F   ++P  + + +     N+LDS +GG  +  ++++ +   +
Sbjct: 253 LKLIHPFIDPLTREKLVF---DEPFVKYVPK-----NELDSLYGGDLKFKYNHDVYWPAL 304
Query: 254 RADDKKKSD 262
               ++K D
Sbjct: 305 VETAREKRD 313
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-71
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 5e-70
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 6e-47
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 7e-46
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 1e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  223 bits (570), Expect = 1e-71
 Identities = 71/284 (25%), Positives = 117/284 (41%), Gaps = 30/284 (10%)

Query: 9   GAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESV 68
           G   +L    Q+  + E+RK++      +     D ++ R+LRAR +  + A +M     
Sbjct: 21  GTPGNLDSA-QEKALAELRKLLE--DAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCE 77

Query: 69  KWRLEYKPEKIVWEDVAREAETGKLYRANF---CDKLGRPVLIMRPGFQN------SSST 119
           KWR +Y  + I+ +    E      +   +    DK GRPV     G  N       +S 
Sbjct: 78  KWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSE 137

Query: 120 EGQIKYLVYCMENAIMNLNPDR--------EQMVWLIDFQGWTMGSV--SVKVTRETANV 169
           E  +K LV+  E+ +    P          E    ++D +G ++ S    +   RE + +
Sbjct: 138 ERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYI 197

Query: 170 LQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDI 229
            QN+YPER+G   + N P  F + + + KPFL+P T  K+    S+    QK +      
Sbjct: 198 SQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKELLKQIPA 254

Query: 230 NKLDSSFGGRSRVGFDYEAFGQLMRADDK--KKSDLMNSGCSVP 271
             L   FGG+S V       G L  +D    +    +      P
Sbjct: 255 ENLPVKFGGKSEVDESK---GGLYLSDIGPWRDPKYIGPEGEAP 295
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.25
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.06
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 85.47
1ufz_A83 Hypothetical protein BAB28515; HBS1-like domain, s 83.07
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 83.02
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 80.78
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=1.3e-49  Score=383.45  Aligned_cols=253  Identities=20%  Similarity=0.278  Sum_probs=220.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHhHHhCCCCccc---hhh
Q 019727            8 FGAEKSLSPEEQQAKINEVRKIIGPIADKYPVLCSDESISRYLRARNWHTKKASKMLVESVKWRLEYKPEKIVW---EDV   84 (336)
Q Consensus         8 ~g~~~~lt~e~~~~~i~elr~~l~~~~~~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~i~~---~~~   84 (336)
                      .|++++|| ++++++|++||+++++....++ ..+|.+|+||||||+||+++|.+||+++++||++++++.+..   ++.
T Consensus         2 ~g~~~~l~-~~q~~~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~   79 (403)
T 1olm_A            2 SGRVGDLS-PRQKEALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV   79 (403)
T ss_dssp             CSBTTBCC-HHHHHHHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHH
T ss_pred             CCCccCCC-HHHHHHHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHH
Confidence            58999999 7889999999999998743334 589999999999999999999999999999999998887643   122


Q ss_pred             HHHHhhCceEeccccCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHHHHHhcCC-------CcccEEEEEeCC
Q 019727           85 AREAETGKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMENAIMNLNP-------DREQMVWLIDFQ  151 (336)
Q Consensus        85 ~~~l~~g~~~~~g~~Dk~GrpV~i~~~~~~d~~------~~~~~~~~~~~~lE~~~~~~~~-------~~~~~vvI~D~~  151 (336)
                      ...+..  .+++ |+|++||||+++++|++++.      +.+++++++++++|.++..+..       ++.|+++|+|++
T Consensus        80 ~~~~~~--~~~~-g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~  156 (403)
T 1olm_A           80 IQQYLS--GGMC-GYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCE  156 (403)
T ss_dssp             HHHHCC--BEEE-EECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHhCC--ceee-ccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECC
Confidence            222222  2334 48999999999999998864      6789999999999999987642       478999999999


Q ss_pred             CCCCCCC---CHHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCC
Q 019727          152 GWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFD  228 (336)
Q Consensus       152 g~s~~~~---~~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id  228 (336)
                      |++++++   .++.++.++.++|++||+||+++||||+|++|.++|+++||||+++|++||+|+++   ++.+.|.++||
T Consensus       157 g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~---~~~~~L~~~I~  233 (403)
T 1olm_A          157 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA---NWKEVLLKHIS  233 (403)
T ss_dssp             TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT---THHHHHTTTSC
T ss_pred             CCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh---hHHHHHHhhcC
Confidence            9999997   36788999999999999999999999999999999999999999999999999976   35789999999


Q ss_pred             cCCcchhcCCCCCCCCChHHHHhhhhhcchhhHhhhhcCCCCCCchhhhhh
Q 019727          229 INKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVAS  279 (336)
Q Consensus       229 ~~~LP~~~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~vp~~~~~~~~  279 (336)
                      +++||++|||+++++           ++++.|.+.++.||+||++++....
T Consensus       234 ~~~LP~~yGG~~~~~-----------~~~~~c~~~i~~gg~vp~~~~~~~~  273 (403)
T 1olm_A          234 PDQVPVEYGGTMTDP-----------DGNPKCKSKINYGGDIPRKYYVRDQ  273 (403)
T ss_dssp             GGGSBGGGTSSBCCT-----------TCCTTCTTTCBCCCCCCGGGCSCSS
T ss_pred             hhhCchhhCCCcCCC-----------CCCcccccccccCCCCCcccccCCC
Confidence            999999999999874           7999999999999999999876543
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 4e-28
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 6e-27
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 4e-25
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 2e-14
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 2e-13
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 9e-09
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 4e-28
 Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 9/155 (5%)

Query: 89  ETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLNPDREQMVW 146
           + G        D  G  VLI R    +    +     +  +   E  +  +   R  +  
Sbjct: 7   KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKA 66

Query: 147 LIDFQGWTMGSVS---VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEP 203
           + D +GW           V ++ A VL + +P ++    L N P +F + ++++KPFL  
Sbjct: 67  IFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTE 126

Query: 204 KTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGG 238
           K  +++    +N  QS          + L   +GG
Sbjct: 127 KIKERIHMHGNNYKQSLLQ----HFPDILPLEYGG 157
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.69
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.62
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.34
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 84.81
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 84.04
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 82.46
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-36  Score=258.55  Aligned_cols=167  Identities=20%  Similarity=0.287  Sum_probs=151.0

Q ss_pred             eccccCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHHHHHhc-------CCCcccEEEEEeCCCCCCCCCC--
Q 019727           95 RANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMENAIMNL-------NPDREQMVWLIDFQGWTMGSVS--  159 (336)
Q Consensus        95 ~~g~~Dk~GrpV~i~~~~~~d~~------~~~~~~~~~~~~lE~~~~~~-------~~~~~~~vvI~D~~g~s~~~~~--  159 (336)
                      ++| +|++||||+++++|+++++      +.++++++.++.+|.+++.+       ..++.++++|+|++|+++++++  
T Consensus        13 ~~G-~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~~   91 (199)
T d1olma3          13 MCG-YDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKP   91 (199)
T ss_dssp             EEE-ECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHH
T ss_pred             ccc-CCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhccc
Confidence            344 8999999999999999864      56789999999999988764       3456899999999999999984  


Q ss_pred             -HHHHHHHHHHHHhhcccccceEEEEcCCcchHHHHHHhhhccCcchhccEEEecCCChhhHHHHHccCCcCCcchhcCC
Q 019727          160 -VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGG  238 (336)
Q Consensus       160 -~~~~~~~~~~lq~~YPe~l~~i~IvN~P~~~~~~~~~vkpfL~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG  238 (336)
                       ++.++.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|++++   +.+.|.++|++++||++|||
T Consensus        92 ~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~---~~~~L~~~i~~~~lP~~yGG  168 (199)
T d1olma3          92 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN---WKEVLLKHISPDQVPVEYGG  168 (199)
T ss_dssp             HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTT---HHHHHTTTSCGGGSBGGGTS
T ss_pred             cHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCC---CHHHHHHhCCHhhCCHHhCC
Confidence             68899999999999999999999999999999999999999999999999999764   47889999999999999999


Q ss_pred             CCCCCCChHHHHhhhhhcchhhHhhhhcCCCCCCchhh
Q 019727          239 RSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLL  276 (336)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~vp~~~~~  276 (336)
                      +++++           ++++.|...++.||.+|++.+.
T Consensus       169 t~~~~-----------~~~~~~~~~~~~~~~~p~~~~~  195 (199)
T d1olma3         169 TMTDP-----------DGNPKCKSKINYGGDIPRKYYV  195 (199)
T ss_dssp             SBCCT-----------TCCTTCTTTCBCCCCCCGGGCS
T ss_pred             CCCCC-----------CCChhhhccCCCCCcCCHHHhh
Confidence            99874           8999999999999999998653
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure