Citrus Sinensis ID: 019729
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FRL3 | 487 | Sugar transporter ERD6-li | yes | no | 0.931 | 0.642 | 0.831 | 1e-155 | |
| Q93YP9 | 488 | Sugar transporter ERD6-li | no | no | 0.931 | 0.641 | 0.819 | 1e-153 | |
| P93051 | 463 | Sugar transporter ERD6-li | no | no | 0.860 | 0.624 | 0.447 | 1e-68 | |
| Q8LBI9 | 482 | Sugar transporter ERD6-li | no | no | 0.872 | 0.607 | 0.426 | 3e-67 | |
| Q3ECP7 | 470 | Sugar transporter ERD6-li | no | no | 0.764 | 0.546 | 0.470 | 2e-65 | |
| Q0WQ63 | 470 | Sugar transporter ERD6-li | no | no | 0.883 | 0.631 | 0.408 | 2e-64 | |
| O04036 | 496 | Sugar transporter ERD6 OS | no | no | 0.803 | 0.544 | 0.440 | 1e-63 | |
| Q94KE0 | 470 | Sugar transporter ERD6-li | no | no | 0.794 | 0.568 | 0.449 | 3e-62 | |
| Q8VZT3 | 462 | Sugar transporter ERD6-li | no | no | 0.794 | 0.577 | 0.468 | 1e-61 | |
| Q94AF9 | 467 | Sugar transporter ERD6-li | no | no | 0.812 | 0.584 | 0.435 | 3e-61 |
| >sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/315 (83%), Positives = 296/315 (93%), Gaps = 2/315 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAG 314
NGVLFYSS IF +AG
Sbjct: 300 NGVLFYSSTIFESAG 314
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Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/316 (81%), Positives = 295/316 (93%), Gaps = 3/316 (0%)
Query: 1 MSFRDDNEEAA--NLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALG 58
MSFRDDN E +LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAG 314
INGVLFYSS IF +AG
Sbjct: 300 INGVLFYSSTIFESAG 315
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 193/293 (65%), Gaps = 4/293 (1%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V V G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG
Sbjct: 28 VYLSTFVAVCGSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGP 87
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
IA+ +GRKG++ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIA
Sbjct: 88 IADLVGRKGAMRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIA 147
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+ RG+L ++NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWL
Sbjct: 148 PKTFRGALTTLNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWL 207
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
AK+G +FE++L+ LRG DIS E EI+ + + R + +L ++RY ++I
Sbjct: 208 AKVGRDTEFEAALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIA 267
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAG---KINISLDVILPIV-EALNSTYIE 336
GL+V QQ GING+ FY+S+IF AG ++ + + +L +V ALN+ ++
Sbjct: 268 FGLMVFQQFGGINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVD 320
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 195/307 (63%), Gaps = 14/307 (4%)
Query: 9 EAANLRKPFL-HTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGFTCG 67
+ +L KPFL H + + +S +M V+F V G +FG G
Sbjct: 17 KVEDLGKPFLTHEDDEKESENNESYLM-------------VLFSTFVAVCGSFEFGSCVG 63
Query: 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127
YS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG++ +A I
Sbjct: 64 YSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGAMRTSACFCIT 123
Query: 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI 187
GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L ++NQL + IG
Sbjct: 124 GWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTTLNQLMIVIGS 183
Query: 188 MLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD 247
+++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F +LQ LRG D
Sbjct: 184 SVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFRVALQKLRGKD 243
Query: 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSS 307
DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ GING+ FY+S
Sbjct: 244 ADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFVGINGIGFYAS 303
Query: 308 NIFANAG 314
F AG
Sbjct: 304 ETFVKAG 310
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 180/257 (70%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAG 314
G+NG+ FY+S+IF +AG
Sbjct: 282 GVNGIAFYASSIFESAG 298
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 194/311 (62%), Gaps = 14/311 (4%)
Query: 4 RDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFG 63
+DD E+ + +P L + + + + + S V ++ G +FG
Sbjct: 5 KDDMEKRNDKSEPLL--------------LPENGSDVSEEASWMVYLSTIIAVCGSYEFG 50
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG++ +++V
Sbjct: 51 TCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGAMRLSSV 110
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSV 183
+ IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L ++NQL +
Sbjct: 111 ISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALATLNQLFI 170
Query: 184 TIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE +LQ L
Sbjct: 171 VIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFEIALQKL 230
Query: 244 RGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVL 303
RG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ GINGV+
Sbjct: 231 RGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFVGINGVI 290
Query: 304 FYSSNIFANAG 314
FY+ IF +AG
Sbjct: 291 FYAQQIFVSAG 301
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/270 (44%), Positives = 179/270 (66%)
Query: 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIA 104
+ SV V G G G+SS QA I DL L+++E+S+FGS+ +G ++GA+
Sbjct: 55 TASVFLSTFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVF 114
Query: 105 SGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164
SG++A+ +GRK +++ I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIA
Sbjct: 115 SGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIA 174
Query: 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESP 224
EIAP+++RGS NQL GI L +++G F+ WR+L V+G++PC + LFFIPESP
Sbjct: 175 EIAPKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESP 234
Query: 225 RWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284
RWLAK+G ++ SSLQ LRG D DIS E N I+ ++ + + +EL ++RY +PL
Sbjct: 235 RWLAKLGRDKECRSSLQRLRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPL 294
Query: 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAG 314
+IG+GL+ LQQL G +GV +Y+S++F G
Sbjct: 295 IIGVGLMFLQQLCGSSGVTYYASSLFNKGG 324
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 179/267 (67%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
V+F V G FG GYSS Q II+DL L+++++S+FGS+ G M+GAI SG+
Sbjct: 32 VLFSTFVSVCGSFCFGCAAGYSSVAQTGIINDLGLSVAQYSMFGSIMTFGGMIGAIFSGK 91
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
+A+ +GRKG++ A + I GW+ ++ +KDS +L +GRL GF VG++SY +PVYIAEI
Sbjct: 92 VADLMGRKGTMWFAQIFCIFGWVAVALAKDSMWLDIGRLSTGFAVGLLSYVIPVYIAEIT 151
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL + G+ L Y++G FV+WR LA++G++PC L + LFFIPESPR L
Sbjct: 152 PKHVRGAFVFANQLMQSCGLSLFYVIGNFVHWRNLALIGLIPCALQVVTLFFIPESPRLL 211
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
K G ++ +SLQ LRG D DIS E N IK ++ R +L ++RY ++IG
Sbjct: 212 GKWGHEKECRASLQSLRGDDADISEEANTIKETMILFDEGPKSRVMDLFQRRYAPSVVIG 271
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAG 314
+GL++LQQLSG +G+++Y ++F G
Sbjct: 272 VGLMLLQQLSGSSGLMYYVGSVFDKGG 298
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 169/267 (63%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQ 107
++F ++ FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S +
Sbjct: 26 LIFSTFIIVSASFTFGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAK 85
Query: 108 IAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
A G K +L +A + I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI
Sbjct: 86 AASAFGHKMTLWVADLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEIT 145
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227
P+++RG+ NQL G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWL
Sbjct: 146 PKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWL 205
Query: 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIG 287
AK G ++ E LQ LRG DI E EIK SV +S + + I L KRY L IG
Sbjct: 206 AKKGRDKECEEVLQKLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIG 265
Query: 288 IGLLVLQQLSGINGVLFYSSNIFANAG 314
IGL++LQQL G G+ Y S +F AG
Sbjct: 266 IGLMLLQQLCGTAGISSYGSTLFKLAG 292
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/273 (43%), Positives = 176/273 (64%)
Query: 42 RDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVG 101
R + V+ V +G GY+S + I+ +L L++++FS FGS NVG VG
Sbjct: 24 RRITACVILSTFVAVCSAFSYGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVG 83
Query: 102 AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161
A+ SGQ+A +GR+ +L + GWL I+F+K+ +L +GR+ G GVG+ISY VPV
Sbjct: 84 ALFSGQLAVILGRRRTLWACDFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPV 143
Query: 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIP 221
YIAEI P+++RG+ + NQL G+ L Y G +NWRV+AV+G +PC L G+FFIP
Sbjct: 144 YIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIP 203
Query: 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281
ESPRWLAK+ ++++ ESSL LRG DTD+S E EI+ + F+++ +K+Y
Sbjct: 204 ESPRWLAKIRLSKEVESSLHRLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYR 263
Query: 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 314
L++GIGL+++QQLSG +G+ +YS+ IF AG
Sbjct: 264 RTLVVGIGLMLIQQLSGASGITYYSNAIFRKAG 296
|
Sugar transporter. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| 147792214 | 486 | hypothetical protein VITISV_009034 [Viti | 0.931 | 0.644 | 0.850 | 1e-157 | |
| 225430744 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.931 | 0.644 | 0.850 | 1e-157 | |
| 224065573 | 487 | predicted protein [Populus trichocarpa] | 0.931 | 0.642 | 0.853 | 1e-156 | |
| 255538660 | 487 | sugar transporter, putative [Ricinus com | 0.940 | 0.648 | 0.842 | 1e-156 | |
| 356503024 | 487 | PREDICTED: sugar transporter ERD6-like 6 | 0.934 | 0.644 | 0.837 | 1e-156 | |
| 356559394 | 484 | PREDICTED: sugar transporter ERD6-like 6 | 0.922 | 0.640 | 0.841 | 1e-155 | |
| 449460263 | 486 | PREDICTED: sugar transporter ERD6-like 6 | 0.931 | 0.644 | 0.837 | 1e-155 | |
| 15222158 | 487 | sugar transporter ERD6-like 6 [Arabidops | 0.931 | 0.642 | 0.831 | 1e-153 | |
| 297850342 | 487 | hypothetical protein ARALYDRAFT_472174 [ | 0.931 | 0.642 | 0.838 | 1e-153 | |
| 357518263 | 486 | Sugar transporter ERD6-like protein [Med | 0.931 | 0.644 | 0.818 | 1e-153 |
| >gi|147792214|emb|CAN72983.1| hypothetical protein VITISV_009034 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/314 (85%), Positives = 300/314 (95%), Gaps = 1/314 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAG 314
GVLFYSSNIF AG
Sbjct: 300 GVLFYSSNIFEAAG 313
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430744|ref|XP_002266704.1| PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera] gi|297735148|emb|CBI17510.3| unnamed protein product [Vitis vinifera] gi|310877886|gb|ADP37174.1| putative ERD6-like transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/314 (85%), Positives = 300/314 (95%), Gaps = 1/314 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR++ E+ +LRKPFLHTGSWY+MGSRQSSIM SSAQ++RD SVSV+ CVL+VALGPI
Sbjct: 1 MSFREE-EDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+EIISDL L++SEFSIFGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSEIISDLGLSLSEFSIFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF++DSSFL+MGRLLEGFGVGVISYTVPVYIAEI+PQNMRG LGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAQDSSFLYMGRLLEGFGVGVISYTVPVYIAEISPQNMRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVT+GI+LAY+LGLFVNWRVLAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFE+SL
Sbjct: 180 LSVTLGILLAYVLGLFVNWRVLAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFEASL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +RT I+F++LKRKRYWFPLM+GIGLL+LQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVTEIKRSVASTGKRTTIQFSDLKRKRYWFPLMVGIGLLMLQQLSGIN 299
Query: 301 GVLFYSSNIFANAG 314
GVLFYSSNIF AG
Sbjct: 300 GVLFYSSNIFEAAG 313
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065573|ref|XP_002301864.1| predicted protein [Populus trichocarpa] gi|222843590|gb|EEE81137.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/315 (85%), Positives = 298/315 (94%), Gaps = 2/315 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+ ++RKPFLHTGSWY+M SRQSS+M SS Q +RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDGRGDIRKPFLHTGSWYRMSSRQSSMMGSS-QAIRDNSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFT GYSSPTQA I++DL LT+SEFS+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTSGYSSPTQASIMADLGLTVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTEDFESS
Sbjct: 180 QLSVTIGIMLAYLLGLFVEWRILAVLGILPCTILIPGLFFIPESPRWLAKMGMTEDFESS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EV+EIKR++AS+SRRT IRFAELKRKRYWFPL +GIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISVEVHEIKRAIASTSRRTTIRFAELKRKRYWFPLTVGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAG 314
NGVLFYSSNIFA AG
Sbjct: 300 NGVLFYSSNIFATAG 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538660|ref|XP_002510395.1| sugar transporter, putative [Ricinus communis] gi|223551096|gb|EEF52582.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/318 (84%), Positives = 298/318 (93%), Gaps = 2/318 (0%)
Query: 1 MSFRDDNEEA-ANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD+E+A +LRKPFLHTGSWY+MGSRQSS+M SS Q++RD S+SVV CVL+VALGP
Sbjct: 1 MSFRDDSEDARGDLRKPFLHTGSWYRMGSRQSSMMGSS-QVIRDSSISVVACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQ I DLKL++SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQTAITDDLKLSVSEYSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNI+GWL ISF+ D+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG+LGSVN
Sbjct: 120 IAAIPNILGWLAISFAHDASFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMTEDFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVQWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTEDFEAS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDIS+EVNEIKRSVAS+SRR+ IRF ELKR+RYW PLMIGIGLLVLQQLSGI
Sbjct: 240 LQVLRGFDTDISLEVNEIKRSVASTSRRSTIRFVELKRRRYWLPLMIGIGLLVLQQLSGI 299
Query: 300 NGVLFYSSNIFANAGKIN 317
NGVLFYSS IF +AG N
Sbjct: 300 NGVLFYSSTIFESAGVKN 317
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503024|ref|XP_003520312.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 263/314 (83%), Positives = 296/314 (94%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS ++RDG+VSV+FCVL+VALGPI
Sbjct: 1 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMI
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMI 120
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQ++RG LGSVNQ
Sbjct: 121 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQHLRGGLGSVNQ 180
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LS+TIGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGMT++FE+SL
Sbjct: 181 LSITIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMTDEFETSL 240
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV EIKRSVAS+ +R IRFA+LKRKRYWFPLM+GIGLLVLQQLSGIN
Sbjct: 241 QVLRGFDTDISVEVYEIKRSVASTGKRATIRFADLKRKRYWFPLMVGIGLLVLQQLSGIN 300
Query: 301 GVLFYSSNIFANAG 314
GVLFYS+ IFANAG
Sbjct: 301 GVLFYSTTIFANAG 314
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559394|ref|XP_003547984.1| PREDICTED: sugar transporter ERD6-like 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/310 (84%), Positives = 294/310 (94%)
Query: 5 DDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPIQFGF 64
+++ +A +L+KPFLHTGSWYKMGSRQSSIM SS Q++RDG+VSV+FCVL+VALGPIQFGF
Sbjct: 2 EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61
Query: 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124
TCGYSSPTQ I+ DL L+ISEFS FGSL+NVGAMVGAIASGQIAEYIGRKGSLMIAA+P
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIP 121
Query: 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184
NIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISY VPVYIAEIAPQN+RG LGSVNQLSVT
Sbjct: 122 NIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVT 181
Query: 185 IGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLR 244
IGIMLAYLLGLFVNWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM ++FE+SLQVLR
Sbjct: 182 IGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLQVLR 241
Query: 245 GFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLF 304
GFDTDIS+EV+EIKRSVAS+ +R AIRFA+LKRKRYWFPLM+GIGLLVLQQLSGING+LF
Sbjct: 242 GFDTDISVEVHEIKRSVASTGKRAAIRFADLKRKRYWFPLMVGIGLLVLQQLSGINGILF 301
Query: 305 YSSNIFANAG 314
YS+ IFANAG
Sbjct: 302 YSTTIFANAG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460263|ref|XP_004147865.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] gi|449476810|ref|XP_004154840.1| PREDICTED: sugar transporter ERD6-like 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/314 (83%), Positives = 296/314 (94%), Gaps = 1/314 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFRDDNEE +LRKPFLHTGSWY+MGSRQSS+M SS Q +RD S+SV+ CVL+VALGPI
Sbjct: 1 MSFRDDNEEGRDLRKPFLHTGSWYRMGSRQSSMMGSS-QGIRDSSISVLACVLIVALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ+ I+ DL+LT+ E+S+FGSL+NVGAMVGAI+SGQIAEYIGRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQSSIMKDLRLTVPEYSVFGSLSNVGAMVGAISSGQIAEYIGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
AA+PNIIGWL ISF+KDSSFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQN+RG LGSVNQ
Sbjct: 120 AAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNLRGGLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGI+LAYLLGLFV WR+LAVLG+LPCT+LIPGLFFIPESPRWLAKMGMTE+FE+SL
Sbjct: 180 LSVTIGILLAYLLGLFVPWRLLAVLGILPCTVLIPGLFFIPESPRWLAKMGMTEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFD DISIEVNEIKRSVA++++RT IRFAELKR+RYWFPLMIGIGLL+LQQL+GIN
Sbjct: 240 QVLRGFDADISIEVNEIKRSVATTTKRTTIRFAELKRRRYWFPLMIGIGLLMLQQLTGIN 299
Query: 301 GVLFYSSNIFANAG 314
VLFYSS IFA AG
Sbjct: 300 AVLFYSSTIFAAAG 313
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15222158|ref|NP_177658.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] gi|75334257|sp|Q9FRL3.1|ERDL6_ARATH RecName: Full=Sugar transporter ERD6-like 6 gi|10092276|gb|AAG12689.1|AC025814_13 integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gi|15724240|gb|AAL06513.1|AF412060_1 At1g75220/F22H5_6 [Arabidopsis thaliana] gi|21700861|gb|AAM70554.1| At1g75220/F22H5_6 [Arabidopsis thaliana] gi|332197568|gb|AEE35689.1| sugar transporter ERD6-like 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/315 (83%), Positives = 296/315 (93%), Gaps = 2/315 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MGSRQSS+M SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGSS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAG 314
NGVLFYSS IF +AG
Sbjct: 300 NGVLFYSSTIFESAG 314
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850342|ref|XP_002893052.1| hypothetical protein ARALYDRAFT_472174 [Arabidopsis lyrata subsp. lyrata] gi|297338894|gb|EFH69311.1| hypothetical protein ARALYDRAFT_472174 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 264/315 (83%), Positives = 296/315 (93%), Gaps = 2/315 (0%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGP 59
MSFRDD EE N LR+PFLHTGSWY+MGSRQSS++ SS Q++RD S+SV+ CVL+VALGP
Sbjct: 1 MSFRDDTEEGRNDLRRPFLHTGSWYRMGSRQSSMLESS-QVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ+MRG+LGSVN
Sbjct: 120 IAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQHMRGALGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG T+DFE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGFTDDFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGFDTDI++EVNEIKRSVASSS+R+AIRF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFDTDITVEVNEIKRSVASSSKRSAIRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAG 314
NGVLFYSS IF +AG
Sbjct: 300 NGVLFYSSTIFESAG 314
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357518263|ref|XP_003629420.1| Sugar transporter ERD6-like protein [Medicago truncatula] gi|355523442|gb|AET03896.1| Sugar transporter ERD6-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/314 (81%), Positives = 296/314 (94%), Gaps = 1/314 (0%)
Query: 1 MSFRDDNEEAANLRKPFLHTGSWYKMGSRQSSIMSSSAQMLRDGSVSVVFCVLVVALGPI 60
MSFR+++ + +L+KPFLHTGSWYKMGSRQSS+M S+ ++RD SVSV+FCVL+ ALGPI
Sbjct: 1 MSFREESGDGRDLQKPFLHTGSWYKMGSRQSSVMGSTTSVMRD-SVSVLFCVLIAALGPI 59
Query: 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120
QFGFTCGYSSPTQ II+DLKL++SEFS+FGSL+NVGAMVGAIASGQIAEY+GRKGSLMI
Sbjct: 60 QFGFTCGYSSPTQQAIINDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYVGRKGSLMI 119
Query: 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180
A++PNIIGWL ISF+KDSSFLFMGRLLEGFGVG+ISY VPVYIAEIAP+NMRGSLGSVNQ
Sbjct: 120 ASIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPENMRGSLGSVNQ 179
Query: 181 LSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSL 240
LSVTIGIMLAYLLGLF NWRVLA+LG+LPCT+LIPGLFFIPESPRWLAKMGM E+FE+SL
Sbjct: 180 LSVTIGIMLAYLLGLFANWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMMEEFETSL 239
Query: 241 QVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300
QVLRGFDTDIS+EV+EIK++VAS+ +R IRFA+L+RKRYWFPL +GIGLLVLQQLSGIN
Sbjct: 240 QVLRGFDTDISVEVHEIKKAVASNGKRATIRFADLQRKRYWFPLSVGIGLLVLQQLSGIN 299
Query: 301 GVLFYSSNIFANAG 314
GVLFYS++IFANAG
Sbjct: 300 GVLFYSTSIFANAG 313
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 336 | ||||||
| TAIR|locus:2025132 | 487 | ERDL6 "ERD6-like 6" [Arabidops | 0.931 | 0.642 | 0.787 | 1.2e-131 | |
| TAIR|locus:2016407 | 488 | AT1G19450 [Arabidopsis thalian | 0.931 | 0.641 | 0.784 | 2.2e-130 | |
| TAIR|locus:2066400 | 463 | AT2G48020 [Arabidopsis thalian | 0.830 | 0.602 | 0.455 | 1.2e-65 | |
| TAIR|locus:2199539 | 470 | AT1G54730 [Arabidopsis thalian | 0.818 | 0.585 | 0.449 | 1.2e-63 | |
| TAIR|locus:2144975 | 482 | AT5G18840 "AT5G18840" [Arabido | 0.764 | 0.533 | 0.466 | 3.8e-62 | |
| TAIR|locus:2096219 | 470 | AT3G05150 [Arabidopsis thalian | 0.803 | 0.574 | 0.457 | 7.1e-61 | |
| TAIR|locus:2036084 | 496 | ERD6 "EARLY RESPONSE TO DEHYDR | 0.812 | 0.550 | 0.431 | 1.7e-59 | |
| TAIR|locus:2079802 | 462 | AT3G05400 [Arabidopsis thalian | 0.791 | 0.575 | 0.479 | 3.2e-58 | |
| TAIR|locus:505006329 | 467 | AT3G05165 [Arabidopsis thalian | 0.752 | 0.541 | 0.458 | 5.1e-58 | |
| TAIR|locus:2146365 | 478 | SFP2 [Arabidopsis thaliana (ta | 0.764 | 0.537 | 0.443 | 1.1e-57 |
| TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 248/315 (78%), Positives = 279/315 (88%)
Query: 1 MSFRDDNEEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALGP 59
MSFRDDNEEA N LR+PF+HTGSWY+MG +Q++RD S ALGP
Sbjct: 1 MSFRDDNEEARNDLRRPFIHTGSWYRMGSRQSSMMGS-SQVIRDSSISVLACVLIVALGP 59
Query: 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM 119
IQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEYIGRKGSLM
Sbjct: 60 IQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYIGRKGSLM 119
Query: 120 IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN 179
IAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQNMRG LGSVN
Sbjct: 120 IAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVN 179
Query: 180 QLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESS 239
QLSVTIGIMLAYLLGLFV WR+LAVLG+LPCTLLIPGLFFIPESPRWLAKMGMT++FE+S
Sbjct: 180 QLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETS 239
Query: 240 LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299
LQVLRGF+TDI++EVNEIKRSVASS++R +RF +LKR+RY+FPLM+GIGLLVLQQL GI
Sbjct: 240 LQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGI 299
Query: 300 NGVLFYSSNIFANAG 314
NGVLFYSS IF +AG
Sbjct: 300 NGVLFYSSTIFESAG 314
|
|
| TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1279 (455.3 bits), Expect = 2.2e-130, P = 2.2e-130
Identities = 248/316 (78%), Positives = 279/316 (88%)
Query: 1 MSFRDDN-EEAAN-LRKPFLHTGSWYKMGXXXXXXXXXXAQMLRDGSXXXXXXXXXXALG 58
MSFRDDN EE N LR+PFLHTGSWY+MG +Q++RD S ALG
Sbjct: 1 MSFRDDNTEEGRNDLRRPFLHTGSWYRMGSRQSSMLES-SQVIRDSSISVLACVLIVALG 59
Query: 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118
PIQFGFTCGYSSPTQA I DL LT+SE+S+FGSL+NVGAMVGAIASGQIAEY+GRKGSL
Sbjct: 60 PIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNVGAMVGAIASGQIAEYVGRKGSL 119
Query: 119 MIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV 178
MIAA+PNIIGWL ISF+KD+SFL+MGRLLEGFGVG+ISYTVPVYIAEIAPQ MRG+LGSV
Sbjct: 120 MIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSV 179
Query: 179 NQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFES 238
NQLSVTIGIMLAYLLGLFV WR+LAVLGVLPCTLLIPGLFFIPESPRWLAKMG+T+DFE+
Sbjct: 180 NQLSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFET 239
Query: 239 SLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298
SLQVLRGF+TDI++EVNEIKRSVASSS+R+A+RF +LKR+RY+FPLM+GIGLL LQQL G
Sbjct: 240 SLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGG 299
Query: 299 INGVLFYSSNIFANAG 314
INGVLFYSS IF +AG
Sbjct: 300 INGVLFYSSTIFESAG 315
|
|
| TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 129/283 (45%), Positives = 191/283 (67%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP QA I +DL LTI+EFS+FGSL GAM+GAI SG IA+ +GRKG+
Sbjct: 38 GSFAFGSCAGYSSPAQAAIRNDLSLTIAEFSLFGSLLTFGAMIGAITSGPIADLVGRKGA 97
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++ ++GWL I F+K L +GRL G+G+G SY VP++IAEIAP+ RG+L +
Sbjct: 98 MRVSSAFCVVGWLAIIFAKGVVALDLGRLATGYGMGAFSYVVPIFIAEIAPKTFRGALTT 157
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQ+ + G+ +++++G V WRVLA++G++PC GLFFIPESPRWLAK+G +FE
Sbjct: 158 LNQILICTGVSVSFIIGTLVTWRVLALIGIIPCAASFLGLFFIPESPRWLAKVGRDTEFE 217
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
++L+ LRG DIS E EI+ + + R + +L ++RY ++I GL+V QQ
Sbjct: 218 AALRKLRGKKADISEEAAEIQDYIETLERLPKAKMLDLFQRRYIRSVLIAFGLMVFQQFG 277
Query: 298 GINGVLFYSSNIFANAG---KINISLDVILPIV-EALNSTYIE 336
GING+ FY+S+IF AG ++ + + +L +V ALN+ ++
Sbjct: 278 GINGICFYTSSIFEQAGFPTRLGMIIYAVLQVVITALNAPIVD 320
|
|
| TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 124/276 (44%), Positives = 189/276 (68%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG GYSSP Q+++ +L L+++E+S+FGS+ +GAM+GA SG+IA+ IGR+ +
Sbjct: 42 GSFVFGSAIGYSSPVQSDLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIADMIGRRAT 101
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ + + I+GWL I SK + +L +GR L G+G+GV S+ VPVYIAEI P+ +RG +
Sbjct: 102 MGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKGLRGGFTT 161
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
V+QL + +G+ + YLLG F+ WR+LA++G++PC + + GLF IPESPRWLAK+G E+FE
Sbjct: 162 VHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFE 221
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG DIS E NEIK + + +L + +Y L++G+GL+VLQQ
Sbjct: 222 IALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFG 281
Query: 298 GINGVLFYSSNIFANAGKINISLDVILPIVEALNST 333
G+NG+ FY+S+IF +AG ++ + +I +V + T
Sbjct: 282 GVNGIAFYASSIFESAG-VSSKIGMIAMVVVQIPMT 316
|
|
| TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 120/257 (46%), Positives = 177/257 (68%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ+ I DL L+++EFS+FGS+ +GAM+GA+ SG+I+++ GRKG+
Sbjct: 54 GSFEFGSCVGYSAPTQSSIRQDLNLSLAEFSMFGSILTIGAMLGAVMSGKISDFSGRKGA 113
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +A I GWL + F+K + L +GR G+G+GV SY VPVYIAEI+P+N+RG L +
Sbjct: 114 MRTSACFCITGWLAVFFTKGALLLDVGRFFTGYGIGVFSYVVPVYIAEISPKNLRGGLTT 173
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG +++L+G ++W+ LA+ G+ PC +L+ GL FIPESPRWLAK G ++F
Sbjct: 174 LNQLMIVIGSSVSFLIGSLISWKTLALTGLAPCIVLLFGLCFIPESPRWLAKAGHEKEFR 233
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG D DI+ E + I+ S+ + R +L K+Y ++IG+ L+V QQ
Sbjct: 234 VALQKLRGKDADITNEADGIQVSIQALEILPKARIQDLVSKKYGRSVIIGVSLMVFQQFV 293
Query: 298 GINGVLFYSSNIFANAG 314
GING+ FY+S F AG
Sbjct: 294 GINGIGFYASETFVKAG 310
|
|
| TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 124/271 (45%), Positives = 183/271 (67%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G +FG GYS+PTQ I+ +L L+ S+FS+FGS+ N+GA++GAI SG+I+++IGRKG+
Sbjct: 45 GSYEFGTCVGYSAPTQFGIMEELNLSYSQFSVFGSILNMGAVLGAITSGKISDFIGRKGA 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ +++V + IGWLII +K L GR L G+G G +S+ VPV+IAEI+P+ +RG+L +
Sbjct: 105 MRLSSVISAIGWLIIYLAKGDVPLDFGRFLTGYGCGTLSFVVPVFIAEISPRKLRGALAT 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
+NQL + IG+ +L+G VNWR LA+ GV PC +L G +FIPESPRWL +G DFE
Sbjct: 165 LNQLFIVIGLASMFLIGAVVNWRTLALTGVAPCVVLFFGTWFIPESPRWLEMVGRHSDFE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+LQ LRG +I+ E EI+ +AS + +L K+ +++G+GL+ QQ
Sbjct: 225 IALQKLRGPQANITREAGEIQEYLASLAHLPKATLMDLIDKKNIRFVIVGVGLMFFQQFV 284
Query: 298 GINGVLFYSSNIFANAGKINISLDVILPIVE 328
GINGV+FY+ IF +AG + +L IL +E
Sbjct: 285 GINGVIFYAQQIFVSAGA-SPTLGSILYSIE 314
|
|
| TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 119/276 (43%), Positives = 185/276 (67%)
Query: 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122
G G+SS QA I DL L+++E+S+FGS+ +G ++GA+ SG++A+ +GRK +++
Sbjct: 73 GCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCE 132
Query: 123 VPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS 182
I GWL ++ ++++ +L GRLL G GVG+ SY +PVYIAEIAP+++RGS NQL
Sbjct: 133 FFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLM 192
Query: 183 VTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQV 242
GI L +++G F+ WR+L V+G++PC + LFFIPESPRWLAK+G ++ SSLQ
Sbjct: 193 QNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLAKLGRDKECRSSLQR 252
Query: 243 LRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGV 302
LRG D DIS E N I+ ++ + + +EL ++RY +PL+IG+GL+ LQQL G +GV
Sbjct: 253 LRGSDVDISREANTIRDTIDMTENGGETKMSELFQRRYAYPLIIGVGLMFLQQLCGSSGV 312
Query: 303 LFYSSNIFANAG---KINISLDVILPIVEALNSTYI 335
+Y+S++F G I S+ + + +A+ +T +
Sbjct: 313 TYYASSLFNKGGFPSAIGTSVIATIMVPKAMLATVL 348
|
|
| TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 128/267 (47%), Positives = 170/267 (63%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
FG GY++ T + I+SDL L++++FS+FGSL+ G M+GAI S + A G K +L +A
Sbjct: 40 FGAAIGYTADTMSSIMSDLDLSLAQFSLFGSLSTFGGMIGAIFSAKAASAFGHKMTLWVA 99
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ I GWL IS +KD +L MGR L G GVG+ISY VPVYIAEI P+++RG+ NQL
Sbjct: 100 DLFCITGWLAISLAKDIIWLDMGRFLVGIGVGLISYVVPVYIAEITPKHVRGAFTFSNQL 159
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ + Y G F++WR LA++G +PC + + GLFFIPESPRWLAK G ++ E LQ
Sbjct: 160 LQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFIPESPRWLAKKGRDKECEEVLQ 219
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DI E EIK SV +S + + I L KRY L IGIGL++LQQL G G
Sbjct: 220 KLRGRKYDIVPEACEIKISVEASKKNSNINIRSLFEKRYAHQLTIGIGLMLLQQLCGTAG 279
Query: 302 VLFYSSNIFANAG-KINISLDVILPIV 327
+ Y S +F AG I + V+ IV
Sbjct: 280 ISSYGSTLFKLAGFPARIGMMVLSLIV 306
|
|
| TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 116/253 (45%), Positives = 171/253 (67%)
Query: 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA 121
+G GY+S + I+ +L L++++FS FGS NVG VGA+ SGQ+A +GR+ +L
Sbjct: 44 YGCAAGYTSGAETAIMKELDLSMAQFSAFGSFLNVGGAVGALFSGQLAVILGRRRTLWAC 103
Query: 122 AVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL 181
+ GWL I+F+K+ +L +GR+ G GVG+ISY VPVYIAEI P+++RG+ + NQL
Sbjct: 104 DFFCVFGWLSIAFAKNVFWLDLGRISLGIGVGLISYVVPVYIAEITPKHVRGAFTASNQL 163
Query: 182 SVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQ 241
G+ L Y G +NWRV+AV+G +PC L G+FFIPESPRWLAK+ ++++ ESSL
Sbjct: 164 LQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFIPESPRWLAKIRLSKEVESSLH 223
Query: 242 VLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301
LRG DTD+S E EI+ + F+++ +K+Y L++GIGL+++QQLSG +G
Sbjct: 224 RLRGKDTDVSGEAAEIQVMTKMLEEDSKSSFSDMFQKKYRRTLVVGIGLMLIQQLSGASG 283
Query: 302 VLFYSSNIFANAG 314
+ +YS+ IF AG
Sbjct: 284 ITYYSNAIFRKAG 296
|
|
| TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 114/257 (44%), Positives = 174/257 (67%)
Query: 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117
G FG + GY+S + I+ DL L+I++FS F SL+ +GA +GA+ SG++A +GR+ +
Sbjct: 45 GSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKT 104
Query: 118 LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177
+ ++ + IIGW I+F+KD +L GR+ G G+G+ISY VPVYIAEI+P+++RG+
Sbjct: 105 MWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTF 164
Query: 178 VNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFE 237
NQL G+ + Y G F+NWR+LA+LG LPC + + GLFF+PESPRWLAK+G ++ E
Sbjct: 165 TNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFVPESPRWLAKVGSDKELE 224
Query: 238 SSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297
+SL LRG + DIS E ++I+ + F +L +++Y + L++GIGL+++QQ S
Sbjct: 225 NSLLRLRGGNADISREASDIEVMTKMVENDSKSSFCDLFQRKYRYTLVVGIGLMLIQQFS 284
Query: 298 GINGVLFYSSNIFANAG 314
G + VL Y+S I AG
Sbjct: 285 GSSAVLSYASTILRKAG 301
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FRL3 | ERDL6_ARATH | No assigned EC number | 0.8317 | 0.9315 | 0.6427 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 336 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 5e-61 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 3e-47 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 3e-28 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-18 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 6e-16 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-11 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-08 | |
| PRK15075 | 434 | PRK15075, PRK15075, citrate-proton symporter; Prov | 2e-08 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 3e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 5e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-06 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-05 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 7e-05 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-04 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 5e-04 | |
| COG2270 | 438 | COG2270, COG2270, Permeases of the major facilitat | 8e-04 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.001 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.001 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 0.003 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 5e-61
Identities = 105/285 (36%), Positives = 155/285 (54%), Gaps = 22/285 (7%)
Query: 51 CVLVVALGPIQFGFTCGYSSPTQAEI-----------ISDLKLTISEFSIFGSLANVGAM 99
LV ALG FG+ G I I + + S+ +VG +
Sbjct: 1 LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISY 157
+G++ +G++ + GRK SL+I V +IG L+ F+K SF L +GR++ G GVG IS
Sbjct: 61 IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
Query: 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------WRVLAVLGVLPC 210
VP+YI+EIAP+ +RG+LGS+ QL +T GI++A ++GL +N WR+ L +P
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180
Query: 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAI 270
LL+ GL F+PESPRWL G E+ + L LRG D+ E+ E K S+ S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVS-DVDQEIQEEKDSLERSVEAEKA 239
Query: 271 RFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 314
+ EL R + L++G+ L + QQL+GIN + +YS IF G
Sbjct: 240 SWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLG 284
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 3e-47
Identities = 96/297 (32%), Positives = 149/297 (50%), Gaps = 23/297 (7%)
Query: 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGS 92
L V L+ A+G + FG+ G A + K T S + + S
Sbjct: 19 LGSTYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVS 78
Query: 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF---LFMGRLLEG 149
+ VG +GA+ +G +++ GRK SL+I A+ +IG +++ + + L +GR+L G
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138
Query: 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------VNWRVL 202
GVG+ S VP+Y++EIAP+ +RG+L S+ QL++T GI++AY G + WR+
Sbjct: 139 IGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198
Query: 203 AVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA 262
L ++P LL GLFF+PESPRWL G E+ SL LRG + ++E++
Sbjct: 199 LGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258
Query: 263 SSSRRTAIRFAELKRKRYWF-----PLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 314
S L +G+ L QQ +GIN +++YS IF NAG
Sbjct: 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG 315
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 84/299 (28%), Positives = 127/299 (42%), Gaps = 38/299 (12%)
Query: 48 VVFCVLVVALGPIQFGFTCGYSSPTQ--------AEIISDLKLTISEFSIFGSLANVGAM 99
+ LV LG + FG+ S T A S + A +G +
Sbjct: 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCI 69
Query: 100 VGAIASGQIAEYIGRKGSLMIAAVPNIIG--------WLIISFSKDSSFLFMG----RLL 147
+G G + GR+ SL IAAV I + S D++ R++
Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129
Query: 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197
G GVG+ S P+YIAEIAP ++RG L S NQ ++ G ++ Y + F+
Sbjct: 130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLN 189
Query: 198 --NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVN 255
WR + +P L + L+F+PE+PR+L G E E L+ + G +T + +
Sbjct: 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG-NTLATQALQ 248
Query: 256 EIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAG 314
EIK S+ + ++IG+ L V QQ GIN VL+Y+ IF G
Sbjct: 249 EIKHSLDHGRKTGGKLLMFGV-----GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLG 302
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
Query: 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148
+ S VG ++G+ G +++ GRK L+++ + + ++ +FS + + + RLL
Sbjct: 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190
Query: 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGV 207
G G+G I V E P+ R +G++ Q+ ++G++L L+ F+ +WR L +
Sbjct: 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVS 250
Query: 208 LPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFD-TDISIEVNEIKRSVASSSR 266
LP L +F+PESPRWL G E+ LQ + + + EV + SS
Sbjct: 251 LPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSS 310
Query: 267 RTAIRFAELKRKR 279
+ F +L R
Sbjct: 311 KKQYSFLDLFRTP 323
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY 111
+L++ LG G G SP + DL L+ S+ + S ++G +G++ +G +++
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 112 IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM 171
GR+ L++ + +G L+++F+ L +GR L G G G + IAE P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 172 RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIP 221
RG + +G +L LLG + WR L ++ + LL L F+
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 6e-16
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123
F G+ P+ AE DL + S + G + +G MVGA G +A+ +GRK L+I
Sbjct: 184 FVVGFVLPS-AE--KDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240
Query: 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS--------- 174
N SF + F RLL GFG+G V Y AE Q RG
Sbjct: 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW 300
Query: 175 -LGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRW 226
+G + ++ I+ Y F +WRV ++ PC I L F+PESPR+
Sbjct: 301 MIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
Query: 227 LAKMG 231
+ G
Sbjct: 361 FLENG 365
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126
G+++P I ++ L + S +G GA+ G +A+ IGR+ L+ + +
Sbjct: 37 GFAAPA---ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFS 93
Query: 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186
+ L+ + + + + L + R L G G+G + + ++E AP+ RG+ + IG
Sbjct: 94 VFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG 153
Query: 187 IMLAYLLGLFV----NWRVL-AVLGVLPCTLLIPGLFFIPESPRWL 227
+ L ++ WR L V G+ P LL+ + F+PES +L
Sbjct: 154 AAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
+ DL ++ +E + + ++G + +G++++ GR+ L+I + +G L++ F+
Sbjct: 23 LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195
L + R+L+G G G + IA+ P RG + +G L LLG
Sbjct: 83 SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142
Query: 196 FV----NWR-VLAVLGVLPCTLLIPGLFFIPESPR 225
+ WR +L +L + +P P
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPRPPP 177
|
Length = 346 |
| >gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 62 FGFTCGYSS----PTQAEIISDLKLTISEFSIFGSLANVGAM---VGAIASGQIAEYIGR 114
FGF + P E S L LT F++FG G + +GAI G + +GR
Sbjct: 34 FGFYATAIAKTFFPAGNEFAS-LMLT---FAVFG----AGFLMRPLGAIVLGAYIDRVGR 85
Query: 115 K------------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162
+ G+L+IA VP G+ I + L GRLL+GF GV V VY
Sbjct: 86 RKGLIVTLSIMASGTLLIAFVP---GYATIGLAAPLLVLL-GRLLQGFSAGVELGGVSVY 141
Query: 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN------------WRVLAVLGVLPC 210
+AEIA +G S S + ++ A LLG +N WR+ ++G C
Sbjct: 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG---C 198
Query: 211 TLLIPGLFFI 220
L++P +F I
Sbjct: 199 -LIVPFIFLI 207
|
Length = 434 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII----SFSKDS 138
++ F+ F + +GAI G + IGRK +L+I + IG L+I S++
Sbjct: 34 LLATFATFA-AGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIG 92
Query: 139 SF----LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ L + RL++GF +G +Y+AE AP RG GS Q+ +G++LA L
Sbjct: 93 IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV 152
Query: 195 LFVNW 199
L +++
Sbjct: 153 LLLSY 157
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138
+ L +++ S +G + GA+ G++A+ IGRK L+++ + G ++ ++
Sbjct: 44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA--LFGLFSLATAQAW 101
Query: 139 SF--LFMGRLLEGFGVGVISYTVPVYIA---EIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F L + RLL G G+G +P IA E +RG+ S+ V G LA ++
Sbjct: 102 DFPSLLVARLLTGVGLGG---ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158
Query: 194 GLF----VNWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRG 245
G+ WR + +G + LL+P L ++PES + G + L+ L G
Sbjct: 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFG 215
|
Length = 406 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 4/174 (2%)
Query: 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQI 108
+ +L +A + FG+ G + + L L+ +E + SL +G ++GA+ G +
Sbjct: 176 LLLLLALAFFLLSFGYY-GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 109 AEYIGRKGSLMIAAVP-NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167
++ +GR+ L++ + +G L+++ + + L + LL GFG+G + +E+A
Sbjct: 235 SDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 168 PQNMRGSLGSVNQLSVTIGIMLAYLLG--LFVNWRVLAVLGVLPCTLLIPGLFF 219
P RG+ + ++G L LL L V +L L+ L
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 6/162 (3%)
Query: 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133
AE+ + LT + + S A + GA+ G + GR+ ++ + V G L
Sbjct: 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95
Query: 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193
F+ +F+ RL+ G G+G + Y+ E P+++R + +G ++A +
Sbjct: 96 FAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155
Query: 194 GLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 229
V WR L + +LP + IPE+ W K
Sbjct: 156 YSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEK 197
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-05
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 96 VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155
+G ++ + SG + + GRK L++ ++ + + S + + L + R L+GFG
Sbjct: 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68
Query: 156 SYTVPVYIAEIAPQNMR----GSLGSVNQLSVTIGIMLAYLLGLFVNWRVL-AVLGVLPC 210
IA+I P R G + + L +G L +L F+ WR L +L
Sbjct: 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILAL 128
Query: 211 TLLIPGLFFIPES 223
I F +PE+
Sbjct: 129 AAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 8/148 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
I +DL ++ + +G +GA + + R+ L+ I+ L+ +
Sbjct: 38 PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL 97
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVN---QLSVTIGIMLA 190
+ + L + R L G GV A + P RG L V L+ +G+ L
Sbjct: 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157
Query: 191 YLLGLFVNWR----VLAVLGVLPCTLLI 214
LG WR +AVL +L LL
Sbjct: 158 TFLGQLFGWRATFLAIAVLALLALLLLW 185
|
Length = 394 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 39/173 (22%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
E+ + LT + + S A + G + G + + GR+ +++I+ V +G L F
Sbjct: 45 EVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGF 104
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194
+ LF+ RL+ G G+ + Y+ E P+++R +IG ++A +
Sbjct: 105 APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164
Query: 195 LFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVL 243
V WR L +G+LP + +PE+ W K + + +L
Sbjct: 165 SLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDIL 217
|
Length = 496 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASG 106
V +L+ L F P L L+ + LA + +G + G
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPL---YQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 107 QIAEYIGRKGSLMIAAVPNII---GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163
++++ +GR+ L++A + I+ G ++S ++ S +L + LL GFG G++ + +
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318
Query: 164 AEIAPQNMRGSLGSVNQLSVTIGIMLA 190
+++AP+ RG+ + + ++G L
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALG 345
|
Length = 346 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135
I +DL LT E + + A +G G G +A+ GRK +M + V +G + +
Sbjct: 44 IKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA 103
Query: 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLG 194
L + R + G G+ Y E P++++ + IG I+ AY +
Sbjct: 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMP 163
Query: 195 LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRW 226
F WR +G+LP L+I PES W
Sbjct: 164 SFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136
+DL L+ +E + G +V A +GAI +G + E G K LMI V I L + F +
Sbjct: 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE 339
Query: 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGL 195
++ LL G +G + Y+A + P+ G + L+ + +L+ +
Sbjct: 340 GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399
Query: 196 FVNWRVLAVLGVLPCTLL----IPGLFFIPESPR 225
+ GVL +L + L + R
Sbjct: 400 ITQITGSSRAGVLSIIVLLLIGLLLLLRVKVPGR 433
|
Length = 438 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-G 144
FS GS+A ++G + ++ + GRK + ++G+LI F+ + L +
Sbjct: 258 LFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVL 317
Query: 145 RLLEGFGVGVISYTVPVYIAEI 166
+L GFG ++ V +A+
Sbjct: 318 IILAGFGQNFVTGLVWALVADT 339
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMG 144
FS+ + + A++GA +A+ G+K + ++ + IG +++ F +
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVL 318
Query: 145 RLLEGFGVGVISYTVPVYIAEIA 167
+L G G+G+ + +A++
Sbjct: 319 VVLAGIGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134
EI DL L+ S + +L + + A A+ ++A G + SL +A + G LI S
Sbjct: 37 EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL 96
Query: 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA---- 190
LF+G LL G G+ VI+ +P I P+ + G + + S+ G LA
Sbjct: 97 GG-LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALA 154
Query: 191 -YLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPR 225
L WR L L + L ++P++ R
Sbjct: 155 VPLAQHSGGWRGALGFWALLALLAL--LIWLPQALR 188
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.97 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.94 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.92 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.92 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.91 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.91 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.91 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.91 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.91 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.9 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.9 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.9 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.9 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.89 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.89 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.89 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.88 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.87 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.87 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.86 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.86 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.86 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.86 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.86 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.85 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.85 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.85 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.85 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.84 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.83 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.82 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.81 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.81 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.81 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.81 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.8 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.8 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.8 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.8 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.78 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.77 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.76 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.76 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.75 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.73 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.73 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.72 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.72 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.68 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.65 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.65 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.65 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.63 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.63 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.62 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.62 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.61 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.61 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.6 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.58 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.57 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.56 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.56 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.54 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.54 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.53 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.52 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.51 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.51 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.49 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.49 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.49 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.48 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.48 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.48 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.47 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.46 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.46 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.46 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.45 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.44 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.44 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.42 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.41 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.4 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.4 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.4 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.4 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.39 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.38 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.37 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.36 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.35 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.35 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.35 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.34 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.34 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.34 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.34 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.33 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.33 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.33 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.32 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.31 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.31 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.31 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.29 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.29 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.29 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.28 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.28 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.28 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.25 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.24 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.24 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.24 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.22 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.22 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.22 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.21 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.19 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.19 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.18 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.18 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.18 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.17 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.16 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.16 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.16 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.14 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.14 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.14 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.13 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.12 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.12 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.11 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.11 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.09 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.08 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.08 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.08 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.05 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.05 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.03 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.02 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.01 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.01 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.94 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.93 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.92 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.9 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.89 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.89 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.87 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.82 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.8 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.79 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.79 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.77 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.75 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.75 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.75 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.73 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.72 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.71 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.7 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.7 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.68 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.59 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.57 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.57 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.5 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.48 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.39 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.38 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.37 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.34 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.33 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.28 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.24 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.24 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.22 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.18 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.03 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.9 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.9 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.65 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.6 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.55 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.43 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.43 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 97.38 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.32 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.24 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.15 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.12 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.05 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.05 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 96.95 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.93 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 96.74 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 96.62 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.1 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.83 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.82 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 95.81 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.19 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.07 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.97 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 94.95 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 93.9 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.73 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 92.04 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 90.26 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 89.52 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 89.06 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 86.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 85.8 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.22 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 84.65 | |
| COG1230 | 296 | CzcD Co/Zn/Cd efflux system component [Inorganic i | 83.9 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 82.47 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 81.85 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 81.37 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 81.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 80.94 |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=231.72 Aligned_cols=283 Identities=31% Similarity=0.536 Sum_probs=232.7
Q ss_pred CCChhhHHHHHHHHHhhhhhhccccccchhhHhHh--------hhcc--CCchh----HHHHHHHHHHHHHHHHHHHHHH
Q 019729 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEII--------SDLK--LTISE----FSIFGSLANVGAMVGAIASGQI 108 (336)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g--~s~~~----~~~~~~~~~~~~~~~~~~~g~l 108 (336)
+..++.......++++.+..||..+.+++..+.+. +.+| .++++ .+.+.+++.+|.++|+++.+++
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777788888999999999988765443 3456 33332 5788999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH
Q 019729 109 AEYIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (336)
Q Consensus 109 ~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (336)
+||+|||..++++.++..++.+++.+ .+++.+++++|++.|+..|......+.|+.|..|++.||....+.+.+..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 99999999999998888877777665 467889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------cchhHHHHHHhHHHHHHHHHHhhcccCchhHHHH-cCChHHHHHHHHHHhCCChhhHHHHHHHH
Q 019729 186 GIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK-MGMTEDFESSLQVLRGFDTDISIEVNEIK 258 (336)
Q Consensus 186 g~~~~~~~~~------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (336)
|..++..++. .-.|++.+.+..+++++.++.+.++||||+|+.. +++.+||+++++.+++.+++..+..++.+
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 9999977762 2269999999999999999999999999999987 89999999999999998743333222222
Q ss_pred HHhh-hhchhhhhhHHHHhccc-chHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHH
Q 019729 259 RSVA-SSSRRTAIRFAELKRKR-YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILP 325 (336)
Q Consensus 259 ~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 325 (336)
+..+ +.+++++.++.++++++ .+++..+++.+...+++.|.+.+.+|...++++.|++..++.++-.
T Consensus 244 e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~ 312 (485)
T KOG0569|consen 244 EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANL 312 (485)
T ss_pred HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 22233667899999885 5666777888899999999999999999999999999877765543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=239.44 Aligned_cols=267 Identities=24% Similarity=0.282 Sum_probs=217.2
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.+..|.+++++.++.+..+++...++..+|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||++++++.++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 46677788888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc--------
Q 019729 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------- 196 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------- 196 (336)
.+++.++++++++++.++++|++.|++.|+..++..++++|++|+++|++..+++..++.+|.++++.++..
T Consensus 242 ~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~ 321 (742)
T TIGR01299 242 NGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWS 321 (742)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999999888875421
Q ss_pred ---------chhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhh---HHH---HHHHHHHh
Q 019729 197 ---------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI---SIE---VNEIKRSV 261 (336)
Q Consensus 197 ---------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~ 261 (336)
.+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.+++++..+... +.. .++.+...
T Consensus 322 ~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~ 401 (742)
T TIGR01299 322 FQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIH 401 (742)
T ss_pred hccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhh
Confidence 269999999888888888888889999999999999999999999887654211 111 01111000
Q ss_pred h--------hhch---------------hhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh
Q 019729 262 A--------SSSR---------------RTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN 312 (336)
Q Consensus 262 ~--------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (336)
. .... .....++++++++.+++.++ +++.+++...+++++..|+|.++++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~yygl~~w~P~~~~~ 474 (742)
T TIGR01299 402 QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK-LMGVWFTLSFGYYGLSVWFPDMIKH 474 (742)
T ss_pred hhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00113566777666666555 4555666777899999999998765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=231.13 Aligned_cols=288 Identities=36% Similarity=0.601 Sum_probs=233.7
Q ss_pred ChhhHHHHHHHHHhhhhhhcc--ccccchhhHhHhhhcc-----CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 019729 45 SVSVVFCVLVVALGPIQFGFT--CGYSSPTQAEIISDLK-----LTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g-----~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr 115 (336)
.............+.+..+++ .+..++....+.++.. .+. .+.+|+.++..++..+++++.|+++|++|||
T Consensus 40 ~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk 119 (513)
T KOG0254|consen 40 SPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRK 119 (513)
T ss_pred ceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345556666667777777775 5666777666666422 122 2448999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc
Q 019729 116 GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (336)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 195 (336)
+.++++.+.+.++.+++++++|+.+++++|++.|+|.|....+.+.|++|..|++.||...+..+....+|..++..++.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc-----hhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCC-ChhhHHHHHHHHHH-hhhh-chh
Q 019729 196 FV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGF-DTDISIEVNEIKRS-VASS-SRR 267 (336)
Q Consensus 196 ~~-----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~ 267 (336)
.. +||..+.+..+++++..+..+++||+|+|+.++++.+++++.++++++. +.+.+.+.++.+.. ..+. ..+
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAE 279 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhccc
Confidence 65 6999999999999988888889999999999999999999999999993 34444444444411 1111 111
Q ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCC--cchhHHHHHHHHhhh
Q 019729 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKIN--ISLDVILPIVEALNS 332 (336)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~g~ 332 (336)
.+..+.+++++..+++.++++.+..+++++|++.+.+|.+.+++..|.+. .....+++..+.++.
T Consensus 280 ~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t 346 (513)
T KOG0254|consen 280 GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGT 346 (513)
T ss_pred ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 22246677776688888999999999999999999999999999998874 344555555555543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-28 Score=225.12 Aligned_cols=271 Identities=17% Similarity=0.185 Sum_probs=203.6
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-----KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL 118 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l 118 (336)
..+..+.++.++.++.+.++++....+...|.+..++ +.+..+.+++.+...++..++++++|+++||+|||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~ 89 (502)
T TIGR00887 10 FGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVY 89 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 3456667778888889999999999998888776642 34556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHH
Q 019729 119 MIAAVPNIIGWLIISFSKD------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (336)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (336)
.++.++.+++.++++++++ ++.++++|++.|++.|...+..+.+++|++|+++|+++.++.+....+|.++++.
T Consensus 90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~ 169 (502)
T TIGR00887 90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI 169 (502)
T ss_pred HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888765 6789999999999999999999999999999999999999999999988888876
Q ss_pred hhcc---------------------------chhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChH-HHHHHHHHHh
Q 019729 193 LGLF---------------------------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTE-DFESSLQVLR 244 (336)
Q Consensus 193 ~~~~---------------------------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~ 244 (336)
++.. .+||+.+.+.++++++.++..+++||||+|+..+++.+ ++.+.+++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~ 249 (502)
T TIGR00887 170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL 249 (502)
T ss_pred HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence 6521 26999999988888888888889999999998877764 4666666655
Q ss_pred CCChh-hHHHHHHHHHHhhhhchhhhhhHHHHhccc---chHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCc
Q 019729 245 GFDTD-ISIEVNEIKRSVASSSRRTAIRFAELKRKR---YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINI 318 (336)
Q Consensus 245 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 318 (336)
..+.+ ..++.++.++ +++..+.+++++++++ ..++..+.+...++.+...++....|.|.++++.|++..
T Consensus 250 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~ 323 (502)
T TIGR00887 250 QVKIEAEPDEVEKAST----AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPP 323 (502)
T ss_pred ccccccCcccccchhc----cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCC
Confidence 43211 1111111111 1111123566776542 122233333333333333456677789999998898754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=216.66 Aligned_cols=272 Identities=30% Similarity=0.433 Sum_probs=204.4
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhc--------cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL--------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS 117 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~ 117 (336)
+.....++++.++.+..+++...+++..+.+++++ +.+..+.+++.+++.++..++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566777777888999999999999989888877 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------------cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH
Q 019729 118 LMIAAVPNIIGWLIISFS------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (336)
Q Consensus 118 l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (336)
++++.++++++.+++++. +.+..+++.|+++|++.|...+...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 999999999888887763 22456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc------------cchhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHH
Q 019729 186 GIMLAYLLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIE 253 (336)
Q Consensus 186 g~~~~~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (336)
|.++++.++. ..+||+.|++.+++.++..+..+++||+|+++..+++.+++.+..++.++..+ ....
T Consensus 168 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 246 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQA 246 (479)
T ss_pred HHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHH
Confidence 9998877643 23899999998888777776777899999998888877777666666554331 1111
Q ss_pred HHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHH
Q 019729 254 VNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVI 323 (336)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 323 (336)
.++.++...++ .......+. .........+....+.+..+++...+|.|.++++.|++.......
T Consensus 247 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~ 311 (479)
T PRK10077 247 LQEIKHSLDHG----RKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311 (479)
T ss_pred HHHHHHHHHHh----hhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHH
Confidence 11111111000 000111111 111122333334455566667778889999999889886655443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=212.96 Aligned_cols=285 Identities=34% Similarity=0.576 Sum_probs=211.1
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLT--------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr 115 (336)
..++.+...+++.++.+..+++.....+..+.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 3355566666677777888888888888888888888777 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHH
Q 019729 116 GSLMIAAVPNIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL 192 (336)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 192 (336)
++++++.++.+++.+++.+.. +++.+++.|++.|++.+...+....++.|++|+++|+++.++.+.+..+|.++++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 181 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYG 181 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999998886644 34588999999999999999999999999999999999999999999999999999
Q ss_pred hh---cc----chhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHH---HHHhh
Q 019729 193 LG---LF----VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEI---KRSVA 262 (336)
Q Consensus 193 ~~---~~----~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 262 (336)
++ .. .+||+.|++.++..++.++..+++||+|+++..+++.+++.+..++.+..+++.....++. ....+
T Consensus 182 ~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (481)
T TIGR00879 182 FGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRS 261 (481)
T ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 98 33 3899999997777777777777899999887777666665555554443332211111110 00000
Q ss_pred hhchhhhhhHHHHhccc--chHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 019729 263 SSSRRTAIRFAELKRKR--YWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVE 328 (336)
Q Consensus 263 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 328 (336)
.+.+..+..+.+.++.. ..++.++...+.++....+.+.+.+|.|.++++.|++..+++.......
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 329 (481)
T TIGR00879 262 IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329 (481)
T ss_pred HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 01111111233333321 2345555556666666666677888999999999998866655544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-28 Score=207.93 Aligned_cols=273 Identities=15% Similarity=0.134 Sum_probs=211.0
Q ss_pred ccCCChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 019729 41 LRDGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI 120 (336)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 120 (336)
.+..++.++.+...+.+++..+++.+-.++...|.+.++.++|.+|.|++.+.+.+.+.++.++.|.++||.+.|+.+.+
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~ 99 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehH
Confidence 44455667778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh--ccc-
Q 019729 121 AAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG--LFV- 197 (336)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~- 197 (336)
++++.++.+++++++++.+.+.+..++.|..+|..+|.+...+..|+|+++||+..++++.+.++|+.+.|++. +.+
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877 444
Q ss_pred ---hhHHHHHHhHHHHHHH-HHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhh-chhhhhhH
Q 019729 198 ---NWRVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS-SRRTAIRF 272 (336)
Q Consensus 198 ---~w~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 272 (336)
+||..|++.++++++. +++++..+|+|+.. .-...|| .+++. .+.. +++.+.+ -...+.-.
T Consensus 180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-GLP~ie~-------~~~d~---~e~~---~~~~~~~~ls~~~i~~ 245 (448)
T COG2271 180 FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-GLPPIEE-------YRGDP---LEIY---EEEKENEGLTAWQIFV 245 (448)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-CCCCHHH-------hhcCc---hhhh---hhhccCCCccHHHHHH
Confidence 8999999999887776 45566788888621 0001111 11100 0000 0000000 01112233
Q ss_pred HHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHHhh
Q 019729 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEALN 331 (336)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~g 331 (336)
+-+++||. ++.+++..+.....-+++..|.|.|+.|. |++..++....+.+...|
T Consensus 246 ~YVL~Nk~----iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~ag 301 (448)
T COG2271 246 KYVLKNKL----IWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAG 301 (448)
T ss_pred HHHHcChH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34455544 33334444444445678999999999888 999988888877665543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=209.16 Aligned_cols=178 Identities=17% Similarity=0.209 Sum_probs=159.2
Q ss_pred hHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 019729 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (336)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (336)
.|....+++++++..+++....+...|.+++++|++..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~ 85 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI 85 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence 44556666667777788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----------c
Q 019729 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----------V 197 (336)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----------~ 197 (336)
+.++++++++++.+++.|++.|++.+...+....++.|++|+++|+++.++++.+..+|.++++.+++. .
T Consensus 86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 165 (412)
T TIGR02332 86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK 165 (412)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999888743 3
Q ss_pred hhHHHHHHhHHHHHHH-HHHhhcccCchh
Q 019729 198 NWRVLAVLGVLPCTLL-IPGLFFIPESPR 225 (336)
Q Consensus 198 ~w~~~~~~~~~~~~~~-~~~~~~~~e~~~ 225 (336)
+||+.|++.+++.++. .+.++++||+|+
T Consensus 166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 166 GWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 8999999988777655 445567899884
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=200.79 Aligned_cols=244 Identities=18% Similarity=0.212 Sum_probs=195.2
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
+..+..++.+.++.|..+.........+|++.+|+|+|....|++.++|.++..++.++...+.||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 34455666677778888889899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHH
Q 019729 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (336)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~ 201 (336)
.++++++++++||+.++++|++.|+..|.++++..++..+..|+++|++++++...+..++.++|.+++.++ |||+
T Consensus 89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~ 168 (394)
T COG2814 89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA 168 (394)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888887777554 9999
Q ss_pred HHHHhHHHHHHHHHH-hhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccc
Q 019729 202 LAVLGVLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRY 280 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (336)
.|++.+.++++.++. +..+| |+.. +++......+..++++++.
T Consensus 169 ~F~~ia~l~ll~~~~~~~~lP--~~~~----------------------------------~~~~~~~~~~~~~~l~~p~ 212 (394)
T COG2814 169 TFLAIAVLALLALLLLWKLLP--PSEI----------------------------------SGSLPGPLRTLLRLLRRPG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CccC----------------------------------CCCCCcchhHHHHHhcCch
Confidence 999999998888664 55677 2100 0001111223456667665
Q ss_pred hHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 281 WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
.+..++...+. +.+.+....|+..++++. |++....++++-.+++
T Consensus 213 v~~~l~~t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv 258 (394)
T COG2814 213 VLLGLLATFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGI 258 (394)
T ss_pred HHHHHHHHHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHH
Confidence 55544443333 334555666665555555 9998888877644443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=201.31 Aligned_cols=182 Identities=22% Similarity=0.273 Sum_probs=163.5
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
++.|.....+.++.+..+++....++..|.+++++|++..+.+++.++..++..+++++.|+++||+|||++++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45566667777888888889888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h--h
Q 019729 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--W 199 (336)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--w 199 (336)
+++.++++++++++.+++.|++.|++.+..++...+++.|++|+++|+++.++.+.+..+|.++++.++..+ + |
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999998887544 4 9
Q ss_pred HHHHHHhHHHHHHHHHHhhcccCchhHH
Q 019729 200 RVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (336)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (336)
|+.+++.+++.++.++....+||++++.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 195 (405)
T TIGR00891 168 RALFFISILPIIFALWLRKNIPEAEDWK 195 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 9999987777766666666788887644
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=211.93 Aligned_cols=225 Identities=25% Similarity=0.417 Sum_probs=182.2
Q ss_pred hhhHhHhhhccCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 019729 71 PTQAEIISDLKLT---ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (336)
Q Consensus 71 ~~~~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 147 (336)
+..+.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.+++.|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4567789999999 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-hhHHHHHHhHHHHHHHHHHhhcccCchhH
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-NWRVLAVLGVLPCTLLIPGLFFIPESPRW 226 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 226 (336)
.|++.+...+....++.|++|+++|+.+.++...+..+|.++++.++..+ +||+.+++.+++.++..+..+++||+|+|
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~ 269 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW 269 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999999999999999999999999999999988766 79999999988888777777889999999
Q ss_pred HHHcCChHHHHHHHHHHhCCChh-hHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHH
Q 019729 227 LAKMGMTEDFESSLQVLRGFDTD-ISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (336)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (336)
+..+++.+++.+.+++..+.+.. ...+..+.+...+..+..++..++++++++..+...+.....++..
T Consensus 270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 339 (505)
T TIGR00898 270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT 339 (505)
T ss_pred HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH
Confidence 99999988888877766543321 1111111111111111112346778888877666666555544443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=206.61 Aligned_cols=249 Identities=18% Similarity=0.212 Sum_probs=179.7
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchh-HHH-----HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSI-----FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~-----~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
......++.+..+++...++...|.+.++++.+.+. .++ +.++..++..++++++|+++||+|||+++.++.++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445567788888999999988999999888644322 122 24777899999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhH--------HHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh--
Q 019729 125 NIIGWLIISFSKDSSF--------LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-- 194 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-- 194 (336)
++++.+++++++++.. ++++|+++|++.|+.++...++++|++|+++|++..++...+..+|..+++.+.
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 788999999999999999999999999999999999999888887777776443
Q ss_pred --c--------cchhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhh
Q 019729 195 --L--------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASS 264 (336)
Q Consensus 195 --~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (336)
. ..|||+.|++.+++.++.+++...+||+|++...+++.++..+ +..
T Consensus 177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------------------~~~--- 233 (490)
T PRK10642 177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------------------EGL--- 233 (490)
T ss_pred HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------------------ccc---
Confidence 2 2489999999887777666666778999987533221111000 000
Q ss_pred chhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHH
Q 019729 265 SRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVIL 324 (336)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~ 324 (336)
.+..+.++++++++ .++........ .+.....++.+..|.|.++++ .|++..+...+.
T Consensus 234 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~ 292 (490)
T PRK10642 234 QDGPKVSFKEIATK-HWRSLLTCIGL-VIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLII 292 (490)
T ss_pred cccccCCHHHHHHH-hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 00112234555543 23333333322 223334566788899999865 488876555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=200.50 Aligned_cols=246 Identities=20% Similarity=0.180 Sum_probs=177.2
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhcc---CCchhHHHHH---HHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLK---LTISEFSIFG---SLANVGAMVGAIASGQIAEYIGRKGSLM 119 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~Grr~~l~ 119 (336)
.+++..+...+++.+.++++...++...|.+.++++ .+..+.++.. ++..++..++++++|+++||+|||+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~ 97 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345556666677788888999998888999999985 4455444444 4444555599999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHH
Q 019729 120 IAAVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (336)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (336)
++.++++++.+++++++++. .++++|+++|++.|+.++...++++|++|+++|+++.++.+.+...|.++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~ 177 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL 177 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764 5888999999999999999999999999999999999988888777777776
Q ss_pred Hhhc------------cchhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHH
Q 019729 192 LLGL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKR 259 (336)
Q Consensus 192 ~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (336)
.+.. ..|||+.|++.++++++.++....+||+|++..+ +
T Consensus 178 ~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------------------------~--- 228 (432)
T PRK10406 178 LVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR--------------------------A--- 228 (432)
T ss_pred HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--------------------------h---
Confidence 5431 3489999999888877766555567777542100 0
Q ss_pred HhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH
Q 019729 260 SVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVEA 329 (336)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 329 (336)
. + ...+++++++++... .......+.....++.+..|+|.++.+ .|.+..+.+...++..+
T Consensus 229 -~---~--~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~ 290 (432)
T PRK10406 229 -L---K--EAGSLKGLWRNRRAF---IMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALF 290 (432)
T ss_pred -h---c--ccccHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0 0 011345555543222 222222222233456677889998865 58887777665554333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-25 Score=200.56 Aligned_cols=256 Identities=19% Similarity=0.179 Sum_probs=189.1
Q ss_pred HHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 019729 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (336)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (336)
+.....+.++.+..+++.....+..|.+++++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 96 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34455666777777888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----chhHHHHH
Q 019729 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWRVLAV 204 (336)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~w~~~~~ 204 (336)
.++++++++++.++++|++.|++.+..++....++.|++|+++|+++.++...+..+|.++++.+... .+||+.|+
T Consensus 97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~ 176 (426)
T PRK12307 97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFF 176 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877654 48999998
Q ss_pred HhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHH
Q 019729 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (336)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (336)
+..+..++.+......||++++..++.+ .++++ .+...+.....++++++++..+..
T Consensus 177 i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 233 (426)
T PRK12307 177 VGLLPVLLVIYIRARAPESKEWEEAKLS------------GKGKH-----------SQSAWSVFSLSMKGLFNRAQFPLT 233 (426)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccccc-----------cccchhhhhHHHHHHHhhchHHHH
Confidence 8655444433333345665443211100 00000 000001112245667776655544
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 019729 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVE 328 (336)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 328 (336)
....... +..+...+.+..++|.++.+.|.++...+.+.++..
T Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (426)
T PRK12307 234 LCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAA 276 (426)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4332222 222333345677889999888988777776555433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=196.21 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=144.6
Q ss_pred HHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (336)
.++.+..........+..|.+.+++|.++++.+++.+.+.+++.+++++.|.++||+|||+++..+.++.++++++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 94 (390)
T PRK03545 15 ALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA 94 (390)
T ss_pred HHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHH
Q 019729 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (336)
Q Consensus 136 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~ 211 (336)
++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.+++.+
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~ 174 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888544 89999999888776
Q ss_pred HHHHH-hhcccCc
Q 019729 212 LLIPG-LFFIPES 223 (336)
Q Consensus 212 ~~~~~-~~~~~e~ 223 (336)
+..+. ..++||.
T Consensus 175 l~~~~~~~~~~~~ 187 (390)
T PRK03545 175 ITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHhCCCC
Confidence 66443 3345654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-25 Score=201.19 Aligned_cols=176 Identities=16% Similarity=0.177 Sum_probs=152.7
Q ss_pred HHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (336)
.......++.+...++...++...|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~ 102 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN 102 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence 34444455556666666677788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHH
Q 019729 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (336)
Q Consensus 130 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~ 205 (336)
++++++++++.+++.|++.|++.|..++....++.|++|+++|++++++++.+..+|..+++.+.+.+ +||+.|++
T Consensus 103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~ 182 (434)
T PRK11663 103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMI 182 (434)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998877544 89999998
Q ss_pred hHHHHHHH-HHHhhcccCchh
Q 019729 206 GVLPCTLL-IPGLFFIPESPR 225 (336)
Q Consensus 206 ~~~~~~~~-~~~~~~~~e~~~ 225 (336)
.+++.++. ++..+++||+|+
T Consensus 183 ~~i~~~~~~~~~~~~~~~~p~ 203 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDKPQ 203 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCHh
Confidence 87766544 344456788775
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=195.69 Aligned_cols=182 Identities=23% Similarity=0.328 Sum_probs=162.0
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.++.|.+.+++.+..+.++++....+...|.+.+++|.++++.+++.++..++..+++++.|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 34677788888888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhH
Q 019729 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWR 200 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~ 200 (336)
.+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 90 FGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998887443 899
Q ss_pred HHHHHhHHHHHHHHH-HhhcccCchhH
Q 019729 201 VLAVLGVLPCTLLIP-GLFFIPESPRW 226 (336)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~e~~~~ 226 (336)
+.|++.+++.++..+ ...++||+|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 196 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMRWLPESRAF 196 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence 999887766555443 44567888754
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=195.22 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=165.9
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (336)
..+++..|.+++|+|+|+.+.+++.+++.+++.+++++.|+++||+|||+++..+......+.+.....+++..+++.|+
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 87 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQL 87 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999998877665555554433333478999999999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHH-HHHhhccc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL-IPGLFFIP 221 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~-~~~~~~~~ 221 (336)
+.|++.+. .......++|++|+++|++++++.+.+..+|.++++.++..+ +||+.|++.++++++. ++.++++|
T Consensus 88 l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 88 LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999986 556666779999999999999999999999999998887655 9999999977776655 44556789
Q ss_pred CchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHH
Q 019729 222 ESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (336)
Q Consensus 222 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (336)
|+|++. ++. . +. + +....++++++++..+.. .+..++.....+.
T Consensus 167 ~~p~~~---~~~-------------~-~~-------~--------~~~~~~~~ll~~~~~~~~----~~~~~~~~~~~~~ 210 (368)
T TIGR00903 167 ALPFQA---AEG-------------F-GF-------K--------DAVKEFGALAGRKDLWII----GAILGFGVALFDN 210 (368)
T ss_pred CCCCCC---CCC-------------c-ch-------H--------HHHHHHHHHHcChhHHHH----HHHHHHHHHHHHH
Confidence 987531 000 0 00 0 000125567776554333 3334444455678
Q ss_pred HHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 019729 302 VLFYSSNIFANAGKINISLDVILPIVEA 329 (336)
Q Consensus 302 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (336)
+..|+|.++++.|++.. .+....+..+
T Consensus 211 ~~~wlp~~L~~~g~s~~-~~~~~~l~~~ 237 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDI-AGDAVALAIL 237 (368)
T ss_pred HHHHHHHHHHHCCCChH-HHHHHHHHHH
Confidence 88999999988888754 4444443333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=193.46 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=144.4
Q ss_pred HHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 019729 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (336)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (336)
.+.++.+..........+.+|.+.+++|+++++.++..++..++..+++++.|.++||+|||++++.+.++.+++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 103 (394)
T PRK10213 24 SVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS 103 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333445568889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHH
Q 019729 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (336)
Q Consensus 134 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~ 209 (336)
++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+.++|..++|.+++.+ +||+.|++.+++
T Consensus 104 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l 183 (394)
T PRK10213 104 FANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVM 183 (394)
T ss_pred HHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888655 899999988776
Q ss_pred HHHHHHHh-hcccCc
Q 019729 210 CTLLIPGL-FFIPES 223 (336)
Q Consensus 210 ~~~~~~~~-~~~~e~ 223 (336)
+++..+.. ...||+
T Consensus 184 ~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 184 GVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHCCCC
Confidence 66554333 345664
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=195.09 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=193.4
Q ss_pred hHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 019729 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (336)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (336)
.+.......+..+..++......+..|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444445555566666666677788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHH
Q 019729 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (336)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~ 203 (336)
+.+++.+.++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+ +|++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~ 174 (398)
T TIGR00895 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLF 174 (398)
T ss_pred HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeeh
Confidence 9999999999999999999999999999999999999999999999999999999999999998887554 899998
Q ss_pred HHhHHHHHHH-HHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchH
Q 019729 204 VLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWF 282 (336)
Q Consensus 204 ~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (336)
++.++..++. ++...++||++++..++ +.++..+..++......+..++ +.+++ +..++..+...+.+++++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQ-KATQGTKRSVFKALFQGKTAR 250 (398)
T ss_pred hhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccccc-ccccchhhHHHHHHhcchhHH
Confidence 8876554444 44566788888765444 2222222222221111000000 00000 000011111223334333333
Q ss_pred HHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 019729 283 PLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVEA 329 (336)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (336)
..... ++..+......+....|.|.+.++.|.++.+.+.+.+...+
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 296 (398)
T TIGR00895 251 ITVLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNF 296 (398)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33332 22233344445677788898888889988777766554443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-25 Score=204.23 Aligned_cols=181 Identities=19% Similarity=0.127 Sum_probs=153.0
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.+..+.+..+..++++..+.++..++...|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||+++.++.++
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 34455566667777777778888899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHh-----hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--
Q 019729 125 NIIGWLIISF-----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-- 197 (336)
Q Consensus 125 ~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-- 197 (336)
.+++.++.++ +++++.+++.|++.|++.+...+...++++|++|+++|++++|+++.+..+|.++++.+...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 8777766665 588999999999999999999999999999999999999999999999999999888776322
Q ss_pred -----hhHHHHHHhHHHHHHHHH-HhhcccCchh
Q 019729 198 -----NWRVLAVLGVLPCTLLIP-GLFFIPESPR 225 (336)
Q Consensus 198 -----~w~~~~~~~~~~~~~~~~-~~~~~~e~~~ 225 (336)
+||..|.+.+++.++..+ .+++.+++|+
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 588888887766665533 4445677664
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=193.40 Aligned_cols=238 Identities=18% Similarity=0.209 Sum_probs=182.9
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (336)
......+..+...+......|.+|.+.+++|.+.++.++..+++.+++.+++++.|+++||+|||++++.+.++.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~ 96 (413)
T PRK15403 17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACA 96 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHH
Confidence 33344555566667778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHh
Q 019729 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLG 206 (336)
Q Consensus 131 ~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~ 206 (336)
++.++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..++|.+++.+ +||+.|++.
T Consensus 97 ~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 97 ATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999998877777888999999999999999999999999999998888654 899999998
Q ss_pred HHHHHHHHHH-hhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHH
Q 019729 207 VLPCTLLIPG-LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (336)
Q Consensus 207 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (336)
+++.++..+. ++++||+++. +++ +. +.......++++++++..+...
T Consensus 177 ~~~~~i~~~~~~~~lp~~~~~---~~~----------------~~-------------~~~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 177 AVMGLIAFVGLLLAMPETVKR---GAV----------------PF-------------SAKSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHhCCCCccc---cCC----------------CC-------------ChHHHHHHHHHHHcCHHHHHHH
Confidence 8877776554 4557886430 000 00 0001122345666665444433
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHH
Q 019729 286 IGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVIL 324 (336)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~ 324 (336)
+...+ .......+..+.|.++++. |.++.+.+...
T Consensus 225 l~~~~----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~ 260 (413)
T PRK15403 225 ATLSL----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQ 260 (413)
T ss_pred HHHHH----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHH
Confidence 33222 2223445666778888776 88888777654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=198.29 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=158.8
Q ss_pred hHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 019729 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (336)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (336)
.|.++..++++.+...++.+..+..+|.+.+++|.+.++.+|+.+++.++..++.+++|+++||+|||++++.+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45677788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhcc-CCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHH
Q 019729 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (336)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~ 202 (336)
++++++++++++.++++|+++|++.+...+.....+.+.+ |+++|+++.+++.....+|..+||.+++.+ +||+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 9999999999999999999999999998888888787776 679999999999999999999999998666 89999
Q ss_pred HHHhHHHHHHHHH-HhhcccCch
Q 019729 203 AVLGVLPCTLLIP-GLFFIPESP 224 (336)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~e~~ 224 (336)
|++...+.++.++ ..+++|+++
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 9998776666544 445567765
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.3e-30 Score=236.10 Aligned_cols=269 Identities=37% Similarity=0.589 Sum_probs=209.5
Q ss_pred HHhhhhhhccccccchhhHhHh--hhccCC---------chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 56 ALGPIQFGFTCGYSSPTQAEII--SDLKLT---------ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~s---------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.++.+..|++....+...+... ..++.+ ..+.+++.++..+|..+|++++|+++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3444666777766655544433 222222 23468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----
Q 019729 125 NIIGWLIISFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (336)
Q Consensus 125 ~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---- 197 (336)
..++.++.++++ +++.++++|++.|++.|+..+..+.++.|..|+++|+...++.+.+..+|.+++..++..+
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999988887776433
Q ss_pred h---hHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHH
Q 019729 198 N---WRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAE 274 (336)
Q Consensus 198 ~---w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (336)
+ ||..+++.++++++.++..+++||||+|+..+++.+|+++.++++++.+.+.++. ++..++.++.++ .+..+++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ 243 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEI-EEIKAEKKESQE-SKASWRD 243 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccc-cccccccccccc-cceeeee
Confidence 4 9999999999998888888899999999999999999999998876654222222 221111111111 1256777
Q ss_pred Hhcccc-hHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCc-chhHHHHH
Q 019729 275 LKRKRY-WFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINI-SLDVILPI 326 (336)
Q Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~ 326 (336)
+++++. +++.++.+.+..+.+..+++.+.+|.+.++++.|.+.. ....+.++
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 297 (451)
T PF00083_consen 244 LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGL 297 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777753 56677777777777788888888999999988888766 33333333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=190.01 Aligned_cols=157 Identities=14% Similarity=0.185 Sum_probs=130.0
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
+......+..|.+.+++|++.++.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.+++
T Consensus 50 ~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 129 (476)
T PLN00028 50 VSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIA 129 (476)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33445667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHH----HHhhc---------cchhHHHHHHhHHHH
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----YLLGL---------FVNWRVLAVLGVLPC 210 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~----~~~~~---------~~~w~~~~~~~~~~~ 210 (336)
.|++.|++.+... ....+++|++|+++|++++++.+....+|..++ +.+.. ..+||+.|++.+++.
T Consensus 130 ~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~ 208 (476)
T PLN00028 130 VRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLH 208 (476)
T ss_pred HHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHH
Confidence 9999999887654 456688999999999999999876655555554 43322 138999999988887
Q ss_pred HHHHHHhhccc
Q 019729 211 TLLIPGLFFIP 221 (336)
Q Consensus 211 ~~~~~~~~~~~ 221 (336)
++..+..++++
T Consensus 209 l~~~l~~~~~~ 219 (476)
T PLN00028 209 IIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHc
Confidence 76655544444
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-23 Score=185.84 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=136.9
Q ss_pred hHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 019729 48 VVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNII 127 (336)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~ 127 (336)
.|......+.+.+.. ......++..|.+++++|+|.++.+++.+++.+++.+++++.|+++||+|||+++..+..+.++
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~ 86 (393)
T PRK09705 8 NFMLLVLVLIGLNMR-PLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAV 86 (393)
T ss_pred HHHHHHHHHHHHHcc-hhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHH
Confidence 344444444443332 2235677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----c-hhHHH
Q 019729 128 GWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-NWRVL 202 (336)
Q Consensus 128 ~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~-~w~~~ 202 (336)
+.++++++++++.+++.|++.|++.+...+....++.+++| ++|+++++.+..+...|..+++.++.. . +||+.
T Consensus 87 ~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~ 165 (393)
T PRK09705 87 GALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQT 165 (393)
T ss_pred HHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999997 789999999888777777766666543 2 79988
Q ss_pred HHHhHHHHHHH
Q 019729 203 AVLGVLPCTLL 213 (336)
Q Consensus 203 ~~~~~~~~~~~ 213 (336)
+.+.++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (393)
T PRK09705 166 LAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHH
Confidence 77655554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=193.98 Aligned_cols=262 Identities=13% Similarity=0.113 Sum_probs=189.0
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhh----------------------hccCCchhHHHHHHHHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIIS----------------------DLKLTISEFSIFGSLANVGAMVGA 102 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~g~s~~~~~~~~~~~~~~~~~~~ 102 (336)
.+.++.+..++.++......++...+...+.+.+ +++++..+.|++.+++.+++.+++
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~ 93 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQ 93 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHH
Confidence 3445556666666666666677666666666655 789999999999999999999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHH
Q 019729 103 IASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ 180 (336)
Q Consensus 103 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (336)
++.|+++||+|||+++..+.++.+++.+++.++ .+++.+++.|+++|++.+...+....+++|++|+++|+++.++..
T Consensus 94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999999999999999998888877543 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhh-cccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHH
Q 019729 181 LSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (336)
Q Consensus 181 ~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (336)
.+..+|.++++.+++.+ +||+.|++.+++.++..+.++ +.+|+|+.. +...++.++
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~---------------- 235 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKK---------------- 235 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHH----------------
Confidence 99999999998887543 899999998888776655544 456666421 001111000
Q ss_pred HHHHHHhh--hhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 255 NEIKRSVA--SSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 255 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
..++..+ +.+.+.+..++++++++..+. ..+..++...+.+.+..|+|.++.+. |.+..+.+.+.++..+
T Consensus 236 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 236 -YINSSLQGQKGSTRQSLPIKAIPKSLPVWA----IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred -HHHhhcccccCCCCCCCCHHHHhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 0000000 001111234666776654333 33334444445667888999998765 9988888776554433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=190.79 Aligned_cols=248 Identities=17% Similarity=0.141 Sum_probs=179.7
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.++++++++++.+++
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYI 87 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45566677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-hh
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LF 218 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~~ 218 (336)
.|++.|++.+...+....++.|++|+++|+++.++.+....+|.++++.+++.+ +||+.|++.+++.++..+. .+
T Consensus 88 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 88 LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999888654 8999999888777666544 34
Q ss_pred cccCchhHHHHcCChHHHHHH-HHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhh
Q 019729 219 FIPESPRWLAKMGMTEDFESS-LQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (336)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (336)
+.||+|+.. +...++.++. .+..+.+ ...++.++......++.++++...... +..+....
T Consensus 168 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 229 (399)
T TIGR00893 168 FIPDPPQKA--KWLTEEEKYIVVGGLLAE------------QQGKGPSTPKKYQIKELLKDRRVWGLA----LGQFLVNI 229 (399)
T ss_pred eecCCCCcc--ccCCHHHHhhcchhhccc------------cccccccCCCccchHHHhcCHHHHHHH----HHHHHHHh
Confidence 566655311 0001110000 0000000 000011111223455566654333322 22333333
Q ss_pred chHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 298 GINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
....+..+.|.++.+. |.+..+.+.+.+...+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (399)
T TIGR00893 230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGI 262 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHH
Confidence 4556777888888654 8887777766554433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=187.99 Aligned_cols=159 Identities=28% Similarity=0.387 Sum_probs=131.8
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHH-HHHHH-----HHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF-GSLAN-----VGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~-~~~~~-----~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
....++++.+.++++...++...|.+.++++.++.+.+.+ .+... ++..+++++.|+++||+|||+.++.+.++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 5666777889999999999999999999999988775443 33322 22347899999999999999999999999
Q ss_pred HHHHHHHHHhhcchh--------HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc-
Q 019729 125 NIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL- 195 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~- 195 (336)
++++.++++++++++ .+++.|+++|++.+...+....+++|++|+++|+++.++...+..+|..+++.++.
T Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~ 175 (434)
T PRK15075 96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYL 175 (434)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 46889999999999999999999999999999999999988777666666555443
Q ss_pred -----------cchhHHHHHHhHHH
Q 019729 196 -----------FVNWRVLAVLGVLP 209 (336)
Q Consensus 196 -----------~~~w~~~~~~~~~~ 209 (336)
..+||+.|++..+.
T Consensus 176 l~~~~~~~~~~~~gWr~~f~~~~~~ 200 (434)
T PRK15075 176 LNQWLSPAQMAEWGWRIPFLIGCLI 200 (434)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHH
Confidence 24899999886544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=185.87 Aligned_cols=177 Identities=19% Similarity=0.184 Sum_probs=143.0
Q ss_pred HHHHHHHHhhhhhhccccccchhhHh-Hhhhc--cCCchhHHHHH-----HHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAE-IISDL--KLTISEFSIFG-----SLANVGAMVGAIASGQIAEYIGRKGSLMIA 121 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~s~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 121 (336)
.......++.+.++++...++...|. +.+++ +.++. .+++. ++..++..+++++.|+++||+|||+++.++
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~ 100 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLT 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHH
Confidence 34555666778888888887777664 44555 66665 45443 345566789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchh--------HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHh
Q 019729 122 AVPNIIGWLIISFSKDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (336)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 193 (336)
.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++..+..+.+..+|.+++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~ 180 (438)
T PRK09952 101 VWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGL 180 (438)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 588899999999999999999999999999999999999999999998888654
Q ss_pred hc------------cchhHHHHHHhHHHHHHHHHHhhcccCchhHH
Q 019729 194 GL------------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (336)
Q Consensus 194 ~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (336)
.. ..+||+.|++.+++.++........||+|++.
T Consensus 181 ~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~ 226 (438)
T PRK09952 181 VSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFE 226 (438)
T ss_pred HHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 42 34899999998877666555555678887653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=188.22 Aligned_cols=176 Identities=13% Similarity=0.135 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 019729 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (336)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (336)
|.++....+.....+......+...|.+.++ |++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence 3333334444444444444455667888888 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc----chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHH-HHHHhhc----cchh
Q 019729 129 WLIISFSK----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGL----FVNW 199 (336)
Q Consensus 129 ~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~----~~~w 199 (336)
.+.+++.+ +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|.. .+|.++. ..+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw 186 (452)
T PRK11273 107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDW 186 (452)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccH
Confidence 88887753 6778889999999999998888888999999999999999999999988864 4555432 2289
Q ss_pred HHHHHHhHHHHHHH-HHHhhcccCchh
Q 019729 200 RVLAVLGVLPCTLL-IPGLFFIPESPR 225 (336)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~e~~~ 225 (336)
|+.|++.+++.++. ++..+++||+|+
T Consensus 187 ~~~f~i~~~~~~~~~~l~~~~~~~~~~ 213 (452)
T PRK11273 187 HAALYMPAFAAILVALFAFAMMRDTPQ 213 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHh
Confidence 99999987766654 445567788875
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-24 Score=190.23 Aligned_cols=252 Identities=12% Similarity=0.093 Sum_probs=180.5
Q ss_pred hhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh
Q 019729 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS 139 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 139 (336)
+...++...++...|.+.+++|.+..+.+++.++..++..+++++.|+++||+|||+++.++.++.+++.++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 84 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW 84 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence 34445666777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHH-hhc----cchhHHHHHHhHHHHHHH-
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-LGL----FVNWRVLAVLGVLPCTLL- 213 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~-~~~----~~~w~~~~~~~~~~~~~~- 213 (336)
.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++. ++. ..+||+.|++.+++.++.
T Consensus 85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998883 443 338999999887766654
Q ss_pred HHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHH
Q 019729 214 IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (336)
Q Consensus 214 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (336)
++..++.||+|+....+...++ .+ +. .++.++..++.....+...+++++++..+...+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----------~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 228 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLPPAEEM----------PN-EE---PDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFV-- 228 (379)
T ss_pred HHHheeeCCCccccccCccccC----------cc-cc---cccccccccccccchHHHHHHHHhcchHHHHHHHHHHH--
Confidence 4455567776542110000000 00 00 00000000011111223345566665544433332222
Q ss_pred HHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 294 QQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
......+..|.|.++.+. |+++.+++.+.+...+
T Consensus 229 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 263 (379)
T TIGR00881 229 --YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYEL 263 (379)
T ss_pred --HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 223346777888887664 9988888776655444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=184.19 Aligned_cols=180 Identities=23% Similarity=0.319 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 019729 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (336)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 126 (336)
+.+.....+.++.+..+++.....+..|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 96 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFS 96 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34445556666777777788888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHH
Q 019729 127 IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (336)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~ 202 (336)
++.++++++++++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|..+++.+.+.+ +||+.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 97 VGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887654 89999
Q ss_pred HHHhHHHHHHHHHHhhcccCchhH
Q 019729 203 AVLGVLPCTLLIPGLFFIPESPRW 226 (336)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~e~~~~ 226 (336)
|++..+..++.++....+||++++
T Consensus 177 f~~~~~~~~~~~~~~~~~p~~~~~ 200 (496)
T PRK03893 177 FFIGILPIIFALWLRKNLPEAEDW 200 (496)
T ss_pred HHHHHHHHHHHHHHHHhCCCchhh
Confidence 988655555444445567777654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-23 Score=193.27 Aligned_cols=215 Identities=20% Similarity=0.218 Sum_probs=170.8
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhh
Q 019729 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (336)
Q Consensus 78 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 157 (336)
+.+..+.....+..+++.+|.++|++++|.++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT 190 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence 55667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--hhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHH
Q 019729 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTED 235 (336)
Q Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 235 (336)
+...++.|++++++|+.+..+ ......++.+++.+++++ +||+.+++..++.++.++.+++.||+|+|+..+++.++
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 999999999999999999999 666666666666666555 89999999999998887777777899999999999999
Q ss_pred HHHHHHHHhCCC---hhhHHHHHHH-HHHh-hhhchhhhhhHHHHhcccchHHHHHHHHHHHH
Q 019729 236 FESSLQVLRGFD---TDISIEVNEI-KRSV-ASSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (336)
Q Consensus 236 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (336)
+.+.+++..+.+ .+..+..+.. .... +....+++..+.++++.+..+...+...+.++
T Consensus 270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 332 (521)
T KOG0255|consen 270 AIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF 332 (521)
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH
Confidence 999888876533 1111111111 1111 11112233557788887654444454444443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=181.70 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=144.9
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (336)
....++++.+..+......++..|.+.+++|+|.++.+++.+...+++.+++++.|++.||+|||+++..+.++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 87 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVA 87 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33344555666666677788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc-----chhHHHHHH
Q 019729 131 IISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAVL 205 (336)
Q Consensus 131 ~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~w~~~~~~ 205 (336)
+++++++++.+++.|++.|++.+...+....++.|++|+++|+.+.+..+....+|..++|.+.+. .+||+.|++
T Consensus 88 l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 88 GLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred HHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888888888888776543 389999998
Q ss_pred hHHHHHHHHHHh
Q 019729 206 GVLPCTLLIPGL 217 (336)
Q Consensus 206 ~~~~~~~~~~~~ 217 (336)
.+++.++..+..
T Consensus 168 ~~~~~~~~~~~~ 179 (394)
T PRK03699 168 IGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHH
Confidence 877766654443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=181.74 Aligned_cols=229 Identities=17% Similarity=0.229 Sum_probs=175.5
Q ss_pred hccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 019729 63 GFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (336)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (336)
........+..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++.++
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLL 97 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 44556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-h
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-L 217 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~ 217 (336)
+.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.+++.++..++..+. .
T Consensus 98 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (385)
T TIGR00710 98 VLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIF 177 (385)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888654 8999999877776665443 4
Q ss_pred hcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhh
Q 019729 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (336)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (336)
++.||+++.. ++ + +.++.....++.++++..+...+...+.. .
T Consensus 178 ~~~~~~~~~~---~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 220 (385)
T TIGR00710 178 FILPETLPYE---AR--------------I----------------QISTYFETFLLLLKSKMFWGYALIYGASF----G 220 (385)
T ss_pred HhCCCCCCCc---cc--------------C----------------CHHHHHHHHHHHHcCchhHHHHHHHHHHH----H
Confidence 4566654210 00 0 00001123445566655444333322222 2
Q ss_pred chHHHHHhHHHHHH-hcCCCCcchhHHHHHHH
Q 019729 298 GINGVLFYSSNIFA-NAGKINISLDVILPIVE 328 (336)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~ 328 (336)
..+....+.|.+++ +.|.++.+.+.+.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 252 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSVFGLLFALNI 252 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHHHHHHHHHHH
Confidence 23455666777776 55998888777665443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=181.30 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=147.5
Q ss_pred HHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (336)
.+..+..++......+.+|.+++++|.+.++.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~ 88 (382)
T PRK10091 9 ALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS 88 (382)
T ss_pred HHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666677788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHH
Q 019729 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (336)
Q Consensus 136 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~ 211 (336)
++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+ +||+.|++.++..+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~ 168 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNI 168 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHH
Confidence 99999999999999999998898899999999999999999999999999999888877544 89999999887766
Q ss_pred HHHH-HhhcccCc
Q 019729 212 LLIP-GLFFIPES 223 (336)
Q Consensus 212 ~~~~-~~~~~~e~ 223 (336)
+..+ ....+||.
T Consensus 169 ~~~~~~~~~lp~~ 181 (382)
T PRK10091 169 AVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHhCCCC
Confidence 6544 34456765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=181.46 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
++.++..+.+.+..+...+....+.+.+|.+.+++|.+..+.++..+++.+++.+++++.|.++||+|||++++++..+.
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 55666667777777777777777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHH
Q 019729 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (336)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~ 201 (336)
+++.+++.++++++.+++.|++.|++.+...+...+++.|++|+++|.+..++......+|..++|.+++.+ +||+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 999999999999999999999999999988899999999999999999999988887778888888877544 8999
Q ss_pred HHHHhHHHHHHHHHH-hhcccCch
Q 019729 202 LAVLGVLPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~-~~~~~e~~ 224 (336)
.+++.+++.++..+. .+..||++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999887777666543 34567654
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=183.54 Aligned_cols=165 Identities=25% Similarity=0.418 Sum_probs=142.1
Q ss_pred hhhhccccccchhhH-hHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch
Q 019729 60 IQFGFTCGYSSPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS 138 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 138 (336)
+..++......+..| .+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~ 85 (352)
T PF07690_consen 6 FLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNF 85 (352)
T ss_dssp HHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhH
Confidence 444455556677788 7899999999999999999999999999999999999999999999999999997776676888
Q ss_pred hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHH
Q 019729 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (336)
Q Consensus 139 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 214 (336)
+.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.+ +||+.|++.+++.++..
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA 165 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence 89999999999999999999999999999999999999999999999999999998765 79999999888888776
Q ss_pred HH-hhcccCch
Q 019729 215 PG-LFFIPESP 224 (336)
Q Consensus 215 ~~-~~~~~e~~ 224 (336)
++ ..++++++
T Consensus 166 il~~~~~~~~~ 176 (352)
T PF07690_consen 166 ILFILFLPEPP 176 (352)
T ss_dssp HHHHCCC---S
T ss_pred hhHhhhhhhcc
Confidence 53 34455443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-23 Score=191.93 Aligned_cols=173 Identities=18% Similarity=0.307 Sum_probs=153.6
Q ss_pred HHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 019729 52 VLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI 131 (336)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~ 131 (336)
...++++.+...++....++..|.+.+++|.+.++.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34455566667777788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhH
Q 019729 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (336)
Q Consensus 132 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~ 207 (336)
++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..++|.+++.+ +||+.|++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999998888655 8999999987
Q ss_pred HHHHHHHHH-hhcccCch
Q 019729 208 LPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 208 ~~~~~~~~~-~~~~~e~~ 224 (336)
.+.++..+. .+++||++
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 164 PIGIIVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 776665443 44566643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=182.33 Aligned_cols=156 Identities=14% Similarity=0.111 Sum_probs=136.1
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (336)
...++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|+
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYG 99 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----chhHHHHHHhHHHHHHHHHHh-hccc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWRVLAVLGVLPCTLLIPGL-FFIP 221 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~~-~~~~ 221 (336)
+.|++.+..++.....+.+++| ++|+++.++...+..+|..+++.+... .+||+.|++.+++.++..+.. ++++
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 100 LASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee
Confidence 9999999888888889999997 679999999999999988765554433 379999999888777665443 4455
Q ss_pred Cc
Q 019729 222 ES 223 (336)
Q Consensus 222 e~ 223 (336)
++
T Consensus 179 ~~ 180 (377)
T TIGR00890 179 YP 180 (377)
T ss_pred cC
Confidence 44
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-24 Score=189.64 Aligned_cols=181 Identities=17% Similarity=0.194 Sum_probs=164.9
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (336)
..+..+..+.++++.+.+...+...+..+.+.+++.+|++++..|++.+++.+++.+.+|++|+++||++||+++.+|.+
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~ 106 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIF 106 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHH
Confidence 34455666777778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----h
Q 019729 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N 198 (336)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~ 198 (336)
++.++.++++++..+|+++++|.+.|+|.+.+.++.+++++|.+|..+|++++++++.+..+|..+|.+.+..+ .
T Consensus 107 iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888666 4
Q ss_pred hHHHHHHhHHHHHHHHHH-hhcccCch
Q 019729 199 WRVLAVLGVLPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 199 w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (336)
|||.|+..+++.++..++ .++.+|..
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 999999999998887554 45667654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=184.78 Aligned_cols=232 Identities=15% Similarity=0.200 Sum_probs=185.8
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHhhh
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~ 154 (336)
..+++++.++.+++.+.++.|+++++++.|++.||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999999999999999999988765 455778999999999999
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhh-cccCchhHHH
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF-FIPESPRWLA 228 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~ 228 (336)
.+|....+.+.|.|+++|++..++...+..+|.+++.++++.+ ||+..|++.++++++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-- 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-- 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc--
Confidence 9999999999999999999999999999999999888777654 999999999999888866654 45677752
Q ss_pred HcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchh--hhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhH
Q 019729 229 KMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRR--TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYS 306 (336)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (336)
+... .++|.+.+++...+++.+ .+.+++++++++. +++.++..++...+.+.+..|+
T Consensus 223 -h~~i----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~----vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 223 -HPNI----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPP----VWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred -CCCC----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 111222222222222221 4678999999854 4455556666777788999999
Q ss_pred HHHHHhc-CCCCcchhHHHHHHHHhh
Q 019729 307 SNIFANA-GKINISLDVILPIVEALN 331 (336)
Q Consensus 307 ~~~~~~~-g~s~~~~~~~~~~~~~~g 331 (336)
|.|+++. |++..+.+++.++..++.
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~ 307 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAM 307 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHH
Confidence 9999988 999988888877666544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=177.24 Aligned_cols=159 Identities=8% Similarity=0.017 Sum_probs=139.6
Q ss_pred hhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----
Q 019729 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK---- 136 (336)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---- 136 (336)
...+......+.+|.+..+++.+..+.+++.++..++..+++++.|+++||+|||++++.+.++.+++.++..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (365)
T TIGR00900 10 ISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG 89 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334455566778888889999999999999999999999999999999999999999999999988888888777
Q ss_pred -chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHH
Q 019729 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (336)
Q Consensus 137 -~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~ 211 (336)
+++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+ +||+.+++.++..+
T Consensus 90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 169 (365)
T TIGR00900 90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFA 169 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999888655 89999988777666
Q ss_pred HHHHHhhc
Q 019729 212 LLIPGLFF 219 (336)
Q Consensus 212 ~~~~~~~~ 219 (336)
+..+..+.
T Consensus 170 ~~~~~~~~ 177 (365)
T TIGR00900 170 ISALLIVS 177 (365)
T ss_pred HHHHHHHh
Confidence 55444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=176.88 Aligned_cols=221 Identities=18% Similarity=0.192 Sum_probs=169.0
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
+....+.|..|.+.+++|.++++.+++.+++.++..++++++|+++||+|||+.+..+.++.+++.+++.++++++.+++
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLV 99 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44566678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhc
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
.|++.|++.+...+...+++.|++|+++|+...+.......+|..++|.+++.+ +||+.+++.+++.++..+..++
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888889999999999999998888888888888888777544 8999999888777776655555
Q ss_pred ccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhch
Q 019729 220 IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGI 299 (336)
Q Consensus 220 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (336)
++|+++. + + +++.+..++++++++..+...+.... .....
T Consensus 180 ~~~~~~~---~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 219 (401)
T PRK11043 180 LKPSKKA---R-K--------------------------------QSQDALTFKQLLKSKTYLGNVLIFAA----CSAAF 219 (401)
T ss_pred cCCCCCc---c-c--------------------------------cchHHHHHHHHHcChhHHHHHHHHHH----HHHHH
Confidence 5554320 0 0 00011234455555443332222211 11223
Q ss_pred HHHHHhHHHHHHhcCCCCcchhHHH
Q 019729 300 NGVLFYSSNIFANAGKINISLDVIL 324 (336)
Q Consensus 300 ~~~~~~~~~~~~~~g~s~~~~~~~~ 324 (336)
.....+.|.++++.|+++.+.+...
T Consensus 220 ~~~~~~~p~~~~~~g~s~~~~g~~~ 244 (401)
T PRK11043 220 FAWLTGSPFILEQMGYSPADIGLSY 244 (401)
T ss_pred HHHHHHhHHHHHHcCCCHHHHHHHH
Confidence 4556678888888899887777654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=182.70 Aligned_cols=262 Identities=13% Similarity=0.089 Sum_probs=176.7
Q ss_pred HHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 019729 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (336)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (336)
+.......+.+...+.....+....|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 104 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence 334444444445554555555556676776 5999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhh----cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc-----chh
Q 019729 129 WLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNW 199 (336)
Q Consensus 129 ~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~w 199 (336)
.+++++. +++..+.+.|++.|++.|..++.....+.|++|+++|++++++++.+..+|..+++.+... .+|
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 8887764 4566778889999999999999999999999999999999999999999998888765432 389
Q ss_pred HHHHHHhHHHHHHH-HHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcc
Q 019729 200 RVLAVLGVLPCTLL-IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRK 278 (336)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (336)
|+.|++.+++.++. ++.++++||+|+.... .+.++. +.+..+.. .++.+.+.+.++...+..+++
T Consensus 185 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 250 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAFAMMRDTPQSCGL-PPIEEY-------RNDYPDDY------NEKAEQELTAKEIFMQYVLPN 250 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhcCC-CCchhc-------cccccccc------ccccccccchHHHHHHHHccC
Confidence 99999988877665 4455667887653210 000000 00000000 000000000011112234555
Q ss_pred cchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 279 RYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
+..+...+...+ .....+.+..|.|.++++. |+++.+++.+..+..+
T Consensus 251 ~~~~~~~~~~~~----~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~ 298 (438)
T TIGR00712 251 KLLWYIAIANVF----VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEY 298 (438)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHH
Confidence 544443332222 2223456778999999875 9998887776554443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-23 Score=195.82 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=183.5
Q ss_pred HHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (336)
++..+......++.+..++.++++++++..+.|++.+.+.++++++.++.+++.||+|||+++.++.++++++++++++.
T Consensus 39 ~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 39 TCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 33445555666788888999999999999999999999999999999999999999999999999999999999998875
Q ss_pred c---------------------------------------------------chhHHHHHHHHHHHHhhhhhhhHhHHHH
Q 019729 136 K---------------------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (336)
Q Consensus 136 ~---------------------------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 164 (336)
+ .+..++++|+++|++.+..++...+++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 3 2456778999999999999999999999
Q ss_pred hccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--------------------------hhHHHHHHhHHHHHHHHHHhh
Q 019729 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~w~~~~~~~~~~~~~~~~~~~ 218 (336)
|++|+++|+.+.++++.+..+|..+|+.+++.+ +|+..|++.+++.++..+.++
T Consensus 199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887532 267778887777776655566
Q ss_pred cccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhc
Q 019729 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (336)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (336)
++|++.+....+.+.++.++ +.. ...++.. ........++.....+++++++.+....+ ..+....+
T Consensus 279 ~~p~~lp~~~~~~~~~~~~~--~~~-~~~~~~~------~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l----~~~~~~~~ 345 (633)
T TIGR00805 279 FFPKALPKEGKRVNVDVHET--EKL-EKSEDKS------RKKNSDITKDFPKIIKRLLCNPIYMLVIL----AQVIDSLA 345 (633)
T ss_pred hCccccCCcccccchhhhhh--hcc-ccccccc------chhhhhhHHHHHHHHHHHHcCcHHHHHHH----HHHHHHHH
Confidence 66654221000000000000 000 0000000 00000001112234566777765443333 33334445
Q ss_pred hHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 019729 299 INGVLFYSSNIFAN-AGKINISLDVILPIVE 328 (336)
Q Consensus 299 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (336)
.+.+..|+|.++++ .|+++.+++.+++...
T Consensus 346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~ 376 (633)
T TIGR00805 346 FNGYITFLPKYLENQYGISSAEANFLIGVVN 376 (633)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhh
Confidence 66788899999875 4999999988776544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=176.31 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=161.5
Q ss_pred ccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-chhHH
Q 019729 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFL 141 (336)
Q Consensus 64 ~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~ 141 (336)
.......+..|. +++++|++..+.+++.+++.+++.+++++.|+++||+|||+.++++.++.+++.+++++++ +++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL 94 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444556778884 8899999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh----cc----------chhHHHHH-Hh
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----LF----------VNWRVLAV-LG 206 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~----------~~w~~~~~-~~ 206 (336)
++.|++.|++.+ ..+....+++|++|+++|+++.++......+|..+++.++ .. .+||+.++ ..
T Consensus 95 ~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~ 173 (366)
T TIGR00886 95 LLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVP 173 (366)
T ss_pred HHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHH
Confidence 999999999865 4566788999999999999999998855555555544443 32 26999884 33
Q ss_pred HHHHH-HHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHH
Q 019729 207 VLPCT-LLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285 (336)
Q Consensus 207 ~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (336)
++..+ +.++...+.+|+|+.. +.++ +.. ..... . ..+++......+.++++..+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~---~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~ 231 (366)
T TIGR00886 174 AGILLLPALLIFFVGADTPPGK----PATG-KLS---FKGAR--W------------SVGTGALGDQLKVFRDRHTWILA 231 (366)
T ss_pred HHHHHHHHHHHHHhcccCCccc----ccch-hcc---ccccc--c------------cccchhHHHHHHHHhccchhhHH
Confidence 44433 3344445566665310 0000 000 00000 0 00000111344455555433333
Q ss_pred HHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 286 IGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
+.... .....+.+..+.|.++++. |+++.+++.+.++..+
T Consensus 232 ~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 272 (366)
T TIGR00886 232 LLYSV----TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGL 272 (366)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 32222 2222345677788888655 9988888766654443
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=182.66 Aligned_cols=262 Identities=15% Similarity=0.119 Sum_probs=189.1
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccch-hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSP-TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (336)
++..+.++..++..++........++- .+..+.+|.+....+.+++.+++.++++++.++++.+.||++-.+.+....+
T Consensus 40 ~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~ 119 (495)
T KOG2533|consen 40 RKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGI 119 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHH
Confidence 344445555555555555555443322 2333558888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc-------
Q 019729 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF------- 196 (336)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~------- 196 (336)
++++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|+..++++.++..+|+++|..++..
T Consensus 120 ~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 120 LWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 9988888888899999999999999999999999999999999999999999999999999999999888865
Q ss_pred c---hhHHHHHHhHHHHHHHH-HHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhH
Q 019729 197 V---NWRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRF 272 (336)
Q Consensus 197 ~---~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (336)
. ||||.|++.++++++.. ++.+++|+.|..- .-.+.+|..-..++.+..+ . ....++.+...+
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~-~fl~~~ek~~~~~~~~~~~-----------~-~~~~~~~~~~~~ 266 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA-WFLTDEEKELVVERLRESP-----------S-GGIENKFKWKGF 266 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhc-cccchHHHHHHHHHHHhcc-----------C-CCcccccCHHHH
Confidence 2 89999999988877764 5667789988611 0001111000011111110 0 000111345567
Q ss_pred HHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHH
Q 019729 273 AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVI 323 (336)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~ 323 (336)
++.++.+..+...++ .++.....+.+.+|+|.++++. |++..++..+
T Consensus 267 ~~a~~dp~vw~~~l~----~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~l 314 (495)
T KOG2533|consen 267 KEALKDPGVWPFSLC----YFFLKLVNYGFSYWLPLYLKSNGGYSELQANLL 314 (495)
T ss_pred HHHHhchhHHHHHHH----HHHHhhccccHHHHHHHHHHcCCCcChHHhccc
Confidence 777777655544433 3333334678999999999983 6776555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=176.82 Aligned_cols=144 Identities=11% Similarity=0.177 Sum_probs=126.9
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (336)
.+..+.+..+..++......+..|.+++++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++.++..+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33444455566677777888899999999999999999999999999999999999999999999999999999999998
Q ss_pred HH---HhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 131 II---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 131 ~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
++ ..+++++.++++|+++|++.|...+....++.|+.|+++|....++.+..+.+|..+++.++
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 46789999999999999999999999999999988777777788888888888888888765
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=174.03 Aligned_cols=161 Identities=16% Similarity=0.260 Sum_probs=140.9
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
+......+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++.++++++.+++
T Consensus 22 ~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (394)
T PRK11652 22 MAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIA 101 (394)
T ss_pred HHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHH-HHhh
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI-PGLF 218 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~-~~~~ 218 (336)
.|++.|++.+...+....+..|.+++++|+.+.+..+.+..+|..++|.+++.+ +||+.|++.++..++.. +..+
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 102 ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888888999999999999999999999999888888887554 89999998777665543 3445
Q ss_pred cccCch
Q 019729 219 FIPESP 224 (336)
Q Consensus 219 ~~~e~~ 224 (336)
++||++
T Consensus 182 ~~~~~~ 187 (394)
T PRK11652 182 WMPETR 187 (394)
T ss_pred hCCccC
Confidence 677764
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-21 Score=171.05 Aligned_cols=163 Identities=13% Similarity=0.204 Sum_probs=143.6
Q ss_pred cccccchhhHhHhhhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 65 TCGYSSPTQAEIISDLKLTISE-FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 65 ~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
.+...+...|.+.+++|+++++ .+.+.+++..+++++.++.|+++||+|.|+++.++.+.+++..++.+++++...+.+
T Consensus 41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788899999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHH---HhHHHHHHHHHHh
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAV---LGVLPCTLLIPGL 217 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~---~~~~~~~~~~~~~ 217 (336)
.|++.|++.|..+ ....++..|+|+++|+++.++...+..+|.++++++++.+ |||+... +......+++++.
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a 199 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999888655 7885444 3444445556677
Q ss_pred hcccCchhHHH
Q 019729 218 FFIPESPRWLA 228 (336)
Q Consensus 218 ~~~~e~~~~~~ 228 (336)
+++|..++-+.
T Consensus 200 ~~LP~~~~sl~ 210 (511)
T TIGR00806 200 LFLKRPKRSLF 210 (511)
T ss_pred HhCCCCchhhh
Confidence 78886655443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=164.94 Aligned_cols=262 Identities=18% Similarity=0.157 Sum_probs=197.6
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
+..|.....+..+.....+..-..+.+.|.+...+|.+..+.+++......|..+++..+|.++|++|||+.+.+.....
T Consensus 74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t 153 (528)
T KOG0253|consen 74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT 153 (528)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence 44555555566665555544444555667788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----chhHH
Q 019729 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF----VNWRV 201 (336)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~~w~~ 201 (336)
.+...+.+.++|+..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++.. +||||
T Consensus 154 ~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~ 231 (528)
T KOG0253|consen 154 GVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY 231 (528)
T ss_pred HHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999998 999999999999999999877777 8888888887777643 39999
Q ss_pred HHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhh----------HHHHHHHH----HHhhhhchh
Q 019729 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDI----------SIEVNEIK----RSVASSSRR 267 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~~~~ 267 (336)
.......+..+...+.+++|||||++..+++.+++.+.++++...|... ..+.++.+ +......++
T Consensus 232 ~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke 311 (528)
T KOG0253|consen 232 LLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKE 311 (528)
T ss_pred HHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccc
Confidence 9988888777778888899999999999999999999888876544210 11111111 111112233
Q ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHH
Q 019729 268 TAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIF 310 (336)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (336)
......+++.++.++..++. +..++.+-..+++........+
T Consensus 312 ~rg~~~nLlsp~lrkttlll-w~iwfgnafsyyg~VLlttelf 353 (528)
T KOG0253|consen 312 VRGGTTNLLSPKLRKTTLLL-WRIWFGNAFSYYGSVLLTTELF 353 (528)
T ss_pred cccchHhhcChHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHH
Confidence 44567777776665555554 4444444334555555444444
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=170.24 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=130.4
Q ss_pred HhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc
Q 019729 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (336)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 136 (336)
.+.+..+...+...+.+|.+.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++
T Consensus 13 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~ 92 (381)
T PRK03633 13 CGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV 92 (381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+++.++++|++.|++.+...+.....+.+..++++|+++++.+..+..+|..+++.+++.+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998888888888999999999999999999999999999998766
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=174.02 Aligned_cols=160 Identities=20% Similarity=0.316 Sum_probs=142.9
Q ss_pred cccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 019729 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMG 144 (336)
Q Consensus 65 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (336)
......|..|.+.+++|+++++.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM 85 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 33456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH-Hhhc
Q 019729 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (336)
Q Consensus 145 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~ 219 (336)
|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.+++.++..+ ..++
T Consensus 86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998887654 899999988777666544 4456
Q ss_pred ccCch
Q 019729 220 IPESP 224 (336)
Q Consensus 220 ~~e~~ 224 (336)
+||++
T Consensus 166 ~~~~~ 170 (377)
T PRK11102 166 IPETL 170 (377)
T ss_pred CCccC
Confidence 67653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=169.03 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=129.1
Q ss_pred hhhhccccccchhhHhHhh-hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---
Q 019729 60 IQFGFTCGYSSPTQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--- 135 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--- 135 (336)
+........+++..+.+.+ ++|+|+++.+++.++..+++.++.++.|++.||+|.|+++.++.++.++..++++++
T Consensus 44 ~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~ 123 (462)
T PRK15034 44 LLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN 123 (462)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3333455667777777766 899999999999999999999999999999999999999999999999999999987
Q ss_pred --cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHH----HHHHhhc--------------
Q 019729 136 --KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM----LAYLLGL-------------- 195 (336)
Q Consensus 136 --~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~----~~~~~~~-------------- 195 (336)
++++.+++.|++.|++ |..++.....+++|+|+++||++.|+.....++|.. ++|.+..
T Consensus 124 ~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~ 202 (462)
T PRK15034 124 PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQ 202 (462)
T ss_pred cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 8999999999999998 778999999999999999999999999655555554 4444321
Q ss_pred ----cchhHHHHHHhHHHHHHHHHHhhc
Q 019729 196 ----FVNWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 196 ----~~~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
..+||...++..++.++..+..++
T Consensus 203 ~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 203 ADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224777777766666655544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=171.67 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=139.4
Q ss_pred ccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 019729 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLL 147 (336)
Q Consensus 68 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 147 (336)
...+..|.+.+++|.+..+.++..+++.++..+++++.|+++||+|||+.++.+.++.+++.+++..+++.+.+++.|++
T Consensus 21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 100 (392)
T PRK10473 21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFL 100 (392)
T ss_pred HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH-HhhcccC
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~e 222 (336)
.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.+++.+++.++..+ ..+++||
T Consensus 101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (392)
T PRK10473 101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE 180 (392)
T ss_pred HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999888888888887543 899999988777666544 3455676
Q ss_pred ch
Q 019729 223 SP 224 (336)
Q Consensus 223 ~~ 224 (336)
++
T Consensus 181 ~~ 182 (392)
T PRK10473 181 TR 182 (392)
T ss_pred CC
Confidence 53
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=170.79 Aligned_cols=275 Identities=17% Similarity=0.158 Sum_probs=196.7
Q ss_pred CCChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhc-c-------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 019729 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDL-K-------LTISEFSIFGSLANVGAMVGAIASGQIAEYIGR 114 (336)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr 114 (336)
...++....+.++.++.+.++|+...++.+.|.+...+ + +++.-.+.+..+..+|.++|++++|++.||+||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34567778888899999999999999998887765443 1 445567899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHH
Q 019729 115 KGSLMIAAVPNIIGWLIISFSK-------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI 187 (336)
Q Consensus 115 r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 187 (336)
|+++...++++.++++++++.. -+.++.+.|+++|+|.|+-+|...+..+|....+.||...+.+.+....|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9999999999999999777742 146788889999999999999999999999999999998887655555544
Q ss_pred HHHHHhh----ccc---------------hhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcC-ChHHHHHHHHHHhCCC
Q 019729 188 MLAYLLG----LFV---------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMG-MTEDFESSLQVLRGFD 247 (336)
Q Consensus 188 ~~~~~~~----~~~---------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~ 247 (336)
..|.+++ ..+ -||..+.+++++++..+...+.+|||+++-.... +.+.+. +...+..
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~ 270 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVL 270 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccc
Confidence 4444333 211 3999999999999999989999999998763322 222222 1111111
Q ss_pred hhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhH
Q 019729 248 TDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDV 322 (336)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 322 (336)
+. +.+.++..+...+..++....+.+.+..+ .-..+++.+..+|..-.+++..+.+...++++.|+.+.+...
T Consensus 271 ~~-~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~ 343 (538)
T KOG0252|consen 271 SV-DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY 343 (538)
T ss_pred cc-ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH
Confidence 11 00111100111111111112244444434 234466677778887778899999999999999987766655
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=176.88 Aligned_cols=248 Identities=12% Similarity=0.112 Sum_probs=168.9
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH-HH
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM-GR 145 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r 145 (336)
..++...|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAG 115 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44666788899999999999999999999999999999999999999999999999999999999999999888765 57
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcc-
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI- 220 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~- 220 (336)
++.|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+ |||+.|++.+++.++..+..+++
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999998777777888899996 7899999999999999998888877654 89999999888776655444333
Q ss_pred cCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchH
Q 019729 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (336)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (336)
++.+.. .+.+.++ . +...... +.+ +.+. ....+...+....++++++.++....... ....+.+
T Consensus 195 ~~~~~~--~~~~~~~-~---~~~~~~~-~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~ 258 (455)
T TIGR00892 195 PVGPSQ--RVSKSKS-K---EGLPPDG-STK----KLSK-KSTAEKINRFLDFSLFTHRGFLVYLSGNV----IMFLGFF 258 (455)
T ss_pred CCCccc--ccccccc-c---ccCCCCC-ccc----cccc-cchhhhhhhhcchHHhcCchHHHHHHHHH----HHHHHcc
Confidence 322110 0000000 0 0000000 000 0000 00000001111124555554443333222 2222344
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHHHhh
Q 019729 301 GVLFYSSNIFANAGKINISLDVILPIVEALN 331 (336)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~g 331 (336)
....|+|.+.++.|++..+++.++++.++.+
T Consensus 259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~ 289 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVD 289 (455)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5667888888888999988888877655543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=170.34 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=129.0
Q ss_pred chhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 019729 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (336)
Q Consensus 70 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 149 (336)
....+.+.++++.+..+.+++.+++.+.+.+.++++|+++||+|||++++++.++.+++.+++.++++. ++.|+++|
T Consensus 23 ~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G 99 (393)
T PRK11195 23 LFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVG 99 (393)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555678899999999999999999999999999999999999999999999999888887776654 67899999
Q ss_pred HHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHHHhhcccCch
Q 019729 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (336)
++.+...|...+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.+.+...++..+..+.+||+|
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999776 455555555444444445556778765
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=169.78 Aligned_cols=165 Identities=12% Similarity=0.149 Sum_probs=143.9
Q ss_pred HHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 019729 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (336)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 132 (336)
..++...+..|+..+...+..|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.+++
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34455567777777888899999999999999999999999999999999999999999999999999999999998886
Q ss_pred Hh---hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------------
Q 019729 133 SF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------ 197 (336)
Q Consensus 133 ~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------ 197 (336)
.. .++++.+++.|++.|++.|...+....++.+..|+++|++..++.+....+|..++|.++..+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 86 WPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred HHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 54 358899999999999999999999999999999999999999999999999999888876433
Q ss_pred ------------------hhHHHHHHhHHHHHHHHHHh
Q 019729 198 ------------------NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 198 ------------------~w~~~~~~~~~~~~~~~~~~ 217 (336)
+||++|++.+++.++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999988877666554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=174.06 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=146.2
Q ss_pred HHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (336)
+++.+...++....++..|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~ 95 (471)
T PRK10504 16 AFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS 95 (471)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHH
Q 019729 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (336)
Q Consensus 136 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~ 211 (336)
++++.+++.|+++|++.+...+....++.|++|+++|+++.++......+|..++|.+++.+ +||+.|++...+.+
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888654 89999998877666
Q ss_pred HHHHHh-hcccCc
Q 019729 212 LLIPGL-FFIPES 223 (336)
Q Consensus 212 ~~~~~~-~~~~e~ 223 (336)
+..+.. ...|++
T Consensus 176 l~~~~~~~~~~~~ 188 (471)
T PRK10504 176 IGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHhCCCc
Confidence 554433 344544
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-20 Score=166.01 Aligned_cols=224 Identities=14% Similarity=0.034 Sum_probs=155.1
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---h-hcchhHHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F-SKDSSFLFMGRL 146 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~ 146 (336)
+..+.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++. . .++++.+++.|+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYG 113 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 345566788999999999999999999999999999999999999999999999988876553 3 257788888999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHH-HHHHHhhcc----chhHHHHHHhHHHHHHHH-HHhhcc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGI-MLAYLLGLF----VNWRVLAVLGVLPCTLLI-PGLFFI 220 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~----~~w~~~~~~~~~~~~~~~-~~~~~~ 220 (336)
+.|++.+...+.....+.+++|+++|++++|+.+.+..+|. .++|.+++. .||+..+|......++.. +..++.
T Consensus 114 i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 193 (402)
T TIGR00897 114 IRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSN 193 (402)
T ss_pred HHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999888888888889999999999999999999999986 578877654 376655554333323222 223334
Q ss_pred cCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchH
Q 019729 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (336)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (336)
++.++. ++.+ +. ++ ..+....++++++++..+...+. .+.+..+.+
T Consensus 194 ~~~~~~--~~~~-------------~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 239 (402)
T TIGR00897 194 KDIFTP--QHMQ-------------TR----EK-----------FSELGKAATILFTNPNVLLGGMV----RIINTIGLF 239 (402)
T ss_pred CCCCCc--cccc-------------CC----cc-----------hhhHHHHHHHHHcChhHHHHHHH----HHHHHHHHH
Confidence 433210 0000 00 00 00011224456666544333222 223333456
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 019729 301 GVLFYSSNIFANAGKINISLDVILPIVE 328 (336)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 328 (336)
.+..|.|.++++.|++..+.+.+.+...
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~ 267 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFF 267 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 7788999999888999888776655433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=164.17 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=162.0
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRL 146 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (336)
....+.+|.+.+++|++.++.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999999999999998888888777 7788889999999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
+.|++.+...+....++.|++| ++|+++.++.+.+..+|..+++.++..+ +||+.|.+.+++.++... .++
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~~ 172 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AWI 172 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HHh
Confidence 9999999888888889999986 6899999999999888888887776543 388888776654443322 233
Q ss_pred cCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchH
Q 019729 221 PESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGIN 300 (336)
Q Consensus 221 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (336)
|+.++ +.+ ++ ++..+...++.++++..+...+. .+.....++
T Consensus 173 ~~~~~------~~~-----------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 214 (355)
T TIGR00896 173 PQVRR------RVA-----------AN-----------------QTTTRLTPVRIWRSPLAWQVTVF----FGLQSGLYY 214 (355)
T ss_pred hhhcc------ccC-----------CC-----------------CCCCCCCCchhhcCHhHHHHHHH----HHHHHHHHH
Confidence 43321 000 00 00001123345555443332222 222222345
Q ss_pred HHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 019729 301 GVLFYSSNIFANAGKINISLDVILPIVEA 329 (336)
Q Consensus 301 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (336)
....|+|.++++.|.+..+.+.+.++..+
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~ 243 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQL 243 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67778999998889988887777665444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=164.62 Aligned_cols=153 Identities=17% Similarity=0.305 Sum_probs=134.7
Q ss_pred chhhH-hHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 70 SPTQA-EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 70 ~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
.+..+ .+++++|.+..+.|++.+...+...+..++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444 35788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHH-HhhcccC
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~-~~~~~~e 222 (336)
|++.+...+...+++.|++|+++|+++.++.+....+|..+||.+++.+ +||+.|++.++..++..+ ..+++||
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999888899999999999999999999999999999999999988766 899999988776655533 3344554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=162.11 Aligned_cols=230 Identities=15% Similarity=0.196 Sum_probs=176.9
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh---H
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---F 140 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~ 140 (336)
+....+++..+.+.+++|+|++|.+++.++..+...+..++.|.+.||||.|++..++.++..+.++..+++.+++ +
T Consensus 28 ~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ 107 (417)
T COG2223 28 MVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQ 107 (417)
T ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 3455667778888999999999999999999999999999999999999999999999999999999999986554 9
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHH----HHHHHHhhccch---hHHHHHHhHHHHHHH
Q 019729 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG----IMLAYLLGLFVN---WRVLAVLGVLPCTLL 213 (336)
Q Consensus 141 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g----~~~~~~~~~~~~---w~~~~~~~~~~~~~~ 213 (336)
+++++++.|++ |..+++...+++++||++++|.++|+.. ..++| .+++|.+....+ |+....+..+..++.
T Consensus 108 ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~ 185 (417)
T COG2223 108 LLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIA 185 (417)
T ss_pred HHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999997 4788999999999999999999999986 55555 555666666667 998888777766665
Q ss_pred -HHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHH
Q 019729 214 -IPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (336)
Q Consensus 214 -~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (336)
+..++.+.|.|....+.+ ...+...+.+++++..|.+ .+..
T Consensus 186 ~v~~~~~~~d~p~~r~~~~----------------------------------~~~~~~~~~v~~~~~~W~l----sllY 227 (417)
T COG2223 186 AVLAWLGMNDVPEHRASVK----------------------------------PQLPAQLKAVFSNKDTWLL----SLLY 227 (417)
T ss_pred HHHHHHHhCCChhhhcccc----------------------------------ccchhHHHHHhcCcchHHH----HHHH
Confidence 445556666654210000 0000234455555543333 3334
Q ss_pred HHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHHhhhh
Q 019729 293 LQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEALNST 333 (336)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~g~~ 333 (336)
+..+.++..+..++|.++++. |.++.+++.+...+.+.|+.
T Consensus 228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l 269 (417)
T COG2223 228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGAL 269 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 445556778999999998766 99999999888888887764
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-20 Score=166.48 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=129.1
Q ss_pred hhhccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---c
Q 019729 61 QFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K 136 (336)
Q Consensus 61 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~ 136 (336)
...+...+..+.+|. +++++|.|..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++ +
T Consensus 26 ~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T PRK05122 26 ISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLA 105 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhh
Confidence 333445556677776 578899999999999999999999999999999999999999999998888776655443 2
Q ss_pred -----chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhH
Q 019729 137 -----DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGV 207 (336)
Q Consensus 137 -----~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~ 207 (336)
+++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+++.+++.+ +|++.+++.+
T Consensus 106 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 106 AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4567899999999999999999999999999999999999998888888888887777544 8998888766
Q ss_pred HHHHHHHHH
Q 019729 208 LPCTLLIPG 216 (336)
Q Consensus 208 ~~~~~~~~~ 216 (336)
+..++..+.
T Consensus 186 ~~~~~~~~~ 194 (399)
T PRK05122 186 LLALLGLLL 194 (399)
T ss_pred HHHHHHHHH
Confidence 665544433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=164.03 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=133.6
Q ss_pred hhhhhccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHHHHHhhc
Q 019729 59 PIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFSK 136 (336)
Q Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~ 136 (336)
++..++..+...|.+|. +++++|.+..+.+++.+++.++..+.+++.|.++||+||||.++. +..+.+++.+++++++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 34445566666777776 567899999999999999999999999999999999999887654 5666667778888899
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhH--HhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSL--GSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~ 210 (336)
+++.+++.|++.|.+.+...+...++..|+.|++.|+.. .+....+..+|..++|.+++.+ +||+.|++.+++.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999988888888888899999887777654 5677777778888888777544 8999999988876
Q ss_pred HHHHHH-hhcccCchh
Q 019729 211 TLLIPG-LFFIPESPR 225 (336)
Q Consensus 211 ~~~~~~-~~~~~e~~~ 225 (336)
++..+. ++++||.|+
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (375)
T TIGR00899 166 VLCGVLVWLFLPSYPR 181 (375)
T ss_pred HHHHHHHHHhCCCccc
Confidence 666444 455787654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=165.79 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=136.1
Q ss_pred cccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 65 TCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 65 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
......+.+|. +.+++|++..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.+++
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVL 101 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444455544 56789999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHHH-hhc
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG-LFF 219 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~-~~~ 219 (336)
+|++.|.+.+...+...++..|.+|+++|+++.++.+....+|.+++|.+++.+ +|+..|++.+++.++.++. .++
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~ 181 (395)
T PRK10054 102 FFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIW 181 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 899999888888888999999999999999999999999999999999998766 8999999888777666443 344
Q ss_pred ccCc
Q 019729 220 IPES 223 (336)
Q Consensus 220 ~~e~ 223 (336)
+|++
T Consensus 182 ~~~~ 185 (395)
T PRK10054 182 VQRS 185 (395)
T ss_pred Hhcc
Confidence 5544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=162.74 Aligned_cols=149 Identities=19% Similarity=0.221 Sum_probs=123.6
Q ss_pred ccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---h-----
Q 019729 64 FTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F----- 134 (336)
Q Consensus 64 ~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~----- 134 (336)
...+...|.+|. +.+++|.|..+.+++.+++.++..++++++|+++||+|||++++++.+...++.+... .
T Consensus 29 ~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 108 (392)
T PRK12382 29 MTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA 108 (392)
T ss_pred HHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 344555667775 5788999999999999999999999999999999999999999999887776554322 1
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH
Q 019729 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (336)
Q Consensus 135 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~ 210 (336)
.++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+...|..++|.+++.+ +|++.+++..+..
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP 188 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 246788999999999999998898999999999999999999999998888888888887544 8988776655444
Q ss_pred HH
Q 019729 211 TL 212 (336)
Q Consensus 211 ~~ 212 (336)
++
T Consensus 189 ~~ 190 (392)
T PRK12382 189 LL 190 (392)
T ss_pred HH
Confidence 33
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=162.84 Aligned_cols=233 Identities=21% Similarity=0.284 Sum_probs=158.6
Q ss_pred hccccccchhhHhHhhhcc--CCchhHHHHHHH-----HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh
Q 019729 63 GFTCGYSSPTQAEIISDLK--LTISEFSIFGSL-----ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS 135 (336)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~g--~s~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~ 135 (336)
.++...++...+.+.+++. .++++.+.+.+. ..++..+++++.|+++||+|||+++.++.++.+++.++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 85 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC
Confidence 3444445555555666644 344455544433 333445789999999999999999999999999999999999
Q ss_pred cchh--------HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc------------
Q 019729 136 KDSS--------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------------ 195 (336)
Q Consensus 136 ~~~~--------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~------------ 195 (336)
+++. .+++.|+++|++.+...+....++.|++|+++|++..+..+.+..+|.++++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~ 165 (394)
T TIGR00883 86 PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALL 165 (394)
T ss_pred CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 8865 47888999999999999999999999999999999999999999999998887652
Q ss_pred cchhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHH
Q 019729 196 FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (336)
Q Consensus 196 ~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (336)
..+||+.+++.+++.++..+....+||++++..+++ ++++.+...++.
T Consensus 166 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 213 (394)
T TIGR00883 166 EWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE--------------------------------KHKKKRGPIRET 213 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh--------------------------------ccccccCCHHHH
Confidence 237999999887776666555556677654211000 000011223444
Q ss_pred hcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHH-hcCCCCcchhHHHHHHHH
Q 019729 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFA-NAGKINISLDVILPIVEA 329 (336)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~ 329 (336)
++++.+ +..... ...+......+....+.|.+++ +.|.++.+.+.+.....+
T Consensus 214 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 266 (394)
T TIGR00883 214 LTKHRK-PFLLGL-GLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLI 266 (394)
T ss_pred HHhchH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Confidence 444321 122222 2223333345567778888884 458888777766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=169.08 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=165.5
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hcchhHH
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFL 141 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~ 141 (336)
....+..|.+.++++.+..+.+++.+...++..+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 44556778888888889999999999999999999999999999999999999888877776655442 4677888
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHh
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+||.+++.+ +|++.+++.++..++..+..
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999888888899999999999999999999999999999999988665 79999998887777766666
Q ss_pred hcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhh
Q 019729 218 FFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLS 297 (336)
Q Consensus 218 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (336)
+.+|++++.. .+. + + ..++....++..++++..+..++......+
T Consensus 194 ~~l~~~~~~~---~~~-------------~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (417)
T PRK10489 194 LRLPALPPPP---QPR-------------E-H--------------PLRSLLAGFRFLLASPVVGGIALLGGLLTM---- 238 (417)
T ss_pred HhCCCCCCCC---ccc-------------c-c--------------chHHHHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence 6777654310 000 0 0 000011123344555443333332221111
Q ss_pred chHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 019729 298 GINGVLFYSSNIFAN-AGKINISLDVILPIVE 328 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (336)
......+.|.++++ .|.++...+.+.+...
T Consensus 239 -~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~ 269 (417)
T PRK10489 239 -ASAVRVLYPALADEVWQMGAAQIGLLYAAVP 269 (417)
T ss_pred -HHhHHHhhHHHHHhccCCChhHhHHHHHHHH
Confidence 23456678888888 5998888877665443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=158.03 Aligned_cols=164 Identities=27% Similarity=0.444 Sum_probs=146.8
Q ss_pred HhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc
Q 019729 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK 136 (336)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~ 136 (336)
+..+..++......+..|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.++..++.+++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 85 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS 85 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc
Confidence 34445556667777888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~ 212 (336)
+++.+++.|++.|++.+...+...+++.|++|+++|++..++.+....+|..+++.+++.+ +||+.+++.+++.++
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765 699999988887776
Q ss_pred HHHHhhcc
Q 019729 213 LIPGLFFI 220 (336)
Q Consensus 213 ~~~~~~~~ 220 (336)
..+...++
T Consensus 166 ~~~~~~~~ 173 (352)
T cd06174 166 LALLLLFL 173 (352)
T ss_pred HHHHHHHH
Confidence 65554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=159.01 Aligned_cols=165 Identities=20% Similarity=0.152 Sum_probs=138.4
Q ss_pred hhhhhhccccccchhhHhHhhhccCCchh-----HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 019729 58 GPIQFGFTCGYSSPTQAEIISDLKLTISE-----FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII 132 (336)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 132 (336)
+.+..++......+.+|.+.+++|.+..+ .+++.++..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 33444455566778889999999988654 4888999999999999999999999999999999999999999998
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHH
Q 019729 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (336)
Q Consensus 133 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~ 208 (336)
.+.++++.+++.|++.|++.+ ..+....++.+++|+++|+++.++.+.+..+|.+++|.+++.+ +||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITAS 180 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 899999999999999999754 5677788999999999999999999999999999998888654 89999998887
Q ss_pred HHHHHHHH-hhcccCc
Q 019729 209 PCTLLIPG-LFFIPES 223 (336)
Q Consensus 209 ~~~~~~~~-~~~~~e~ 223 (336)
+.++..+. .+++||.
T Consensus 181 ~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 181 VLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHhccC
Confidence 76665443 4455654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=155.94 Aligned_cols=229 Identities=14% Similarity=0.154 Sum_probs=159.2
Q ss_pred ccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHHhh---c
Q 019729 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISFS---K 136 (336)
Q Consensus 66 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~ 136 (336)
....++..|.+.+++|+|.++.+++..+ .+...+ .+++|+++||+ ||||. ++.+.++.+++.+..++. .
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 3455677888999999999999998755 444444 99999999998 89887 456777777777777776 3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h--------hHHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N--------WRVLAV 204 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~--------w~~~~~ 204 (336)
+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ + ||..|+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~ 161 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF 161 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence 4556677777888888888899999999999999999999999999999999998888543 6 999999
Q ss_pred HhHHHHHHHHHHhh-cccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHH
Q 019729 205 LGVLPCTLLIPGLF-FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFP 283 (336)
Q Consensus 205 ~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (336)
+.++..++..+..+ ..||+++. + +. + . ++ +++....++++++++..++
T Consensus 162 i~ai~~l~~~~~~~~~~~e~~~~---~-~~---------------~-~---~~--------~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 162 WTALLILPGLLVTLFLAKEPQED---A-SV---------------P-K---PL--------TQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHhccCCCcc---c-cc---------------c-h---hH--------HHHHHHHHHHHHHhcCchH
Confidence 98887777655544 34664220 0 00 0 0 00 0001223455666654333
Q ss_pred HHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 019729 284 LMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVE 328 (336)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 328 (336)
.+..+....+. ....+....+.|.++.+.|+++.+.+.+.++.+
T Consensus 211 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~ 254 (356)
T TIGR00901 211 ALLLLLLIVLY-KLGDSAATVLTTLFLLDMGFSKEEIALVAKING 254 (356)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHH
Confidence 33332222222 233456667788888888999888877665433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=153.04 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=119.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 019729 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (336)
Q Consensus 80 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 159 (336)
.+.+..-.|.+.+.+.+++.+.++.+|.++||+|||+++++|++..++...+.+.++|+..+++.|++.|+.. +...+.
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~k-gnl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFK-GNLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CchHHH
Confidence 3334455799999999999999999999999999999999999999999999999999977777799999998 467778
Q ss_pred hHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccchh------HHHH----HHhHHHHHH-HHHHhhcccCch
Q 019729 160 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNW------RVLA----VLGVLPCTL-LIPGLFFIPESP 224 (336)
Q Consensus 160 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w------~~~~----~~~~~~~~~-~~~~~~~~~e~~ 224 (336)
.++++|.+++|+|+.+++.++..+++|.++||++++++.- +.+| ++..+++.. .....+++|||-
T Consensus 142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 8999999999999999999999999999999999988732 1112 222233333 234556789984
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-18 Score=146.63 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=186.3
Q ss_pred HHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 019729 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (336)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~ 133 (336)
.++...++.|+......+.+|.+++.++++..+++++...+..++.+.+++.|++.+|+|+|+.+++++.++++++.++.
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444566777777888899999999999999999999999999999999999999999999999999999999999885
Q ss_pred ---hhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-------------
Q 019729 134 ---FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------- 197 (336)
Q Consensus 134 ---~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------- 197 (336)
...++..++++-++.|.|.+...+..+.+++...+++.-...+.+.+...++|.+++|++++.+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 4567889999999999999999999999999999999889999999999999999999998544
Q ss_pred ----------hhHHHHHHhHHHHHHHHHHhhc--ccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhc
Q 019729 198 ----------NWRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSS 265 (336)
Q Consensus 198 ----------~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (336)
.|+++|...+...++..+.... .|+.+. ...+..
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------------~~~~~~ 222 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------------AAPSLG 222 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------cccccc
Confidence 2666777666555544443332 333211 000001
Q ss_pred hhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 019729 266 RRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVE 328 (336)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (336)
+.+.....++++++..+.-.++..++...+ ..+..|++.++.+ .|.+..+++..++...
T Consensus 223 ~~~~~~~~~l~~~~~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~ 282 (422)
T COG0738 223 ASGSAGLSSLFQNKHLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFW 282 (422)
T ss_pred ccccchHHHHHhChHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 111115678888888777777666666655 4688899999988 5888888887766543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-18 Score=153.68 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=166.1
Q ss_pred hhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhH-HHHHHHHHHHHHHHHH
Q 019729 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKG-SLMIAAVPNIIGWLII 132 (336)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~ 132 (336)
++..|+..+.....+|.+.++.|+|.++.|++..+... .+..+++|+++||+ |||| .++++.++.+++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 45556677777788899999999999999999777765 69999999999999 8765 6888888888888777
Q ss_pred Hhhc---chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc-----chhHHHHH
Q 019729 133 SFSK---DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----VNWRVLAV 204 (336)
Q Consensus 133 ~~~~---~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----~~w~~~~~ 204 (336)
++.+ +.+.+++..++.++..+...++..+++.|++|+++|+++.++...+..+|.++++.++.. .+||..|+
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~ 165 (402)
T PRK11902 86 AFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYL 165 (402)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHH
Confidence 7763 466677777888888888999999999999999999999999999989998888776533 38999999
Q ss_pred HhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHH
Q 019729 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (336)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (336)
+.++..++..+..+++||+++.. ++.++ . +++....++++++++.++..
T Consensus 166 i~a~~~l~~~l~~~~~~e~~~~~---~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 166 LMAGLMLAGALTTLWAPEPEVPA---RPPRS---------------------L-------GEAVVGPLRDFFSRRGAWAL 214 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCcccc---cccch---------------------h-------HHHHHHHHHHHHhCcCHHHH
Confidence 98887766655556677754310 00000 0 00112345677788776665
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHH
Q 019729 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPI 326 (336)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 326 (336)
++...+....... ......+.+.++.|+++.+.+.+++.
T Consensus 215 l~~~~l~~~~~~~---~~~~~~~~l~~~~G~~~~~~g~~~~~ 253 (402)
T PRK11902 215 LLLIVLYKLGDAF---AGSLSTTFLIRGAGFSAGEVGIVNKT 253 (402)
T ss_pred HHHHHHHHhHHHH---HHHHHHHHHHHhcCCCHHHHHHHHhH
Confidence 5543333322211 11223344556679998888887644
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=154.02 Aligned_cols=235 Identities=10% Similarity=0.007 Sum_probs=159.4
Q ss_pred HhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHH-HHHHHh
Q 019729 57 LGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA-VPNIIG-WLIISF 134 (336)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~-~~~~~~-~~~~~~ 134 (336)
+.++...+..+...|.+|.+.+++|.|..+.+++.+++.+...++++++|.++||+|||....... ....+. ...+..
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455577788899999999999999999999999999999999999999999854332111 111111 224446
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH
Q 019729 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (336)
Q Consensus 135 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~ 210 (336)
+++++.+++.|.++|.+.+...+...++..++ .++|++..|....+.++|.+++|.+++.+ |||..|++..+..
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 78899999999999998888888888887765 47889999999999999999999887655 8999888766543
Q ss_pred HHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHH
Q 019729 211 TLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGL 290 (336)
Q Consensus 211 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (336)
++.++.. .++++++. +++ ++ +++.......++++|++..+...+...+
T Consensus 169 ~~~~~~~-~~~~~~~~---~~~-~~---------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l 216 (382)
T TIGR00902 169 AFMLIGF-LIKPTIPP---KDA-IP---------------------------EDESQGDSAFIALLKNPMNLRFLAAVCL 216 (382)
T ss_pred HHHHHHH-HcCCCCCC---Ccc-cc---------------------------ccccccchhHHHHHcChHHHHHHHHHHH
Confidence 3333332 33333210 000 00 0000011235567777655444433333
Q ss_pred HHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 019729 291 LVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVEA 329 (336)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (336)
.. .+......+.|.++++.|.++.+.+.+.++..+
T Consensus 217 ~~----~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~ 251 (382)
T TIGR00902 217 IQ----GAHAAYYGFSAIYWQAAGISASATGLLWGIGVL 251 (382)
T ss_pred HH----HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHH
Confidence 22 234456668888888899999888887765433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=162.42 Aligned_cols=174 Identities=11% Similarity=0.056 Sum_probs=133.4
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH---HHhhcchhHHHHHHHH
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRLL 147 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l 147 (336)
..|.+ ++++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+. ...+++...+++++++
T Consensus 272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (490)
T PRK10642 272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM 351 (490)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44544 4668998888888888889999999999999999999999988877654433322 2233456777888999
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
.|++.+...+....++.|.+|++.|+++.++.+....+++.++|.+.+++ +|+..+++..+++++.++..+++||
T Consensus 352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pe 431 (490)
T PRK10642 352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKE 431 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99888877788888999999999999999974433445556677666543 4677777667777777777777899
Q ss_pred chhHHHHc-----CChHHHHHHHHHHhC
Q 019729 223 SPRWLAKM-----GMTEDFESSLQVLRG 245 (336)
Q Consensus 223 ~~~~~~~~-----~~~~~~~~~~~~~~~ 245 (336)
+|+++.++ ++.+|+.+.+++++.
T Consensus 432 s~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 432 TANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccCCCCCCccccccchhhHHHHhhcccc
Confidence 99988755 888999999998874
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=153.39 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=155.6
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchh----HHHHHHHHHHHHHHHHHHhhcchh
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLIISFSKDSS 139 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~ 139 (336)
...+...|.+|.+.+++|.|..+.|++.+++.++..++++++|.++||+||| +.+.++..+ ........+++++
T Consensus 18 ~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 95 (382)
T PRK11128 18 FAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSFW 95 (382)
T ss_pred HHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccHH
Confidence 3446677888889999999999999999999999999999999999999984 333222222 1223334467899
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 215 (336)
.+++.|++.|++.+...+...+++.++ .++|++..+.......+|..++|.+++.+ +||..|++.++..++..+
T Consensus 96 ~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 96 LLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence 999999999999888888888887776 35688888888888888888888888655 999999887765554444
Q ss_pred HhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHH
Q 019729 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQ 295 (336)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (336)
..++.||.++ +++.+ ++.++...+++++++++..+...+..++....
T Consensus 174 ~~~~~~~~~~----~~~~~----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~- 220 (382)
T PRK11128 174 GQLLRPTIMP----QGESR----------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGS- 220 (382)
T ss_pred HHHccCCCCC----ccccc----------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHH-
Confidence 4444454321 00000 00001123467777777655544433333222
Q ss_pred hhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHH
Q 019729 296 LSGINGVLFYSSNIFANAGKINISLDVILPIVEA 329 (336)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 329 (336)
+.....+.|.+.++.|.++.+.+.+.++..+
T Consensus 221 ---~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 251 (382)
T PRK11128 221 ---HAAYYGFSAIYWQAAGYSASTIGYLWSLGVV 251 (382)
T ss_pred ---hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHH
Confidence 2345566677888889998888887765444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=155.36 Aligned_cols=166 Identities=12% Similarity=0.119 Sum_probs=131.0
Q ss_pred cchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh------cchhHHH
Q 019729 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS------KDSSFLF 142 (336)
Q Consensus 69 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~~~ 142 (336)
++...+.+++++|++..+.+++.++. .....++++.|++.||+|+|+++.++.++.+++.++++++ ++++.++
T Consensus 46 fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 46 FNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 34567779999999999999988774 3445678889999999999999999999999999999987 6889999
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHH-HHHhhccc--hhHHHHHHhHHHHHHH-HHHhh
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV--NWRVLAVLGVLPCTLL-IPGLF 218 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~--~w~~~~~~~~~~~~~~-~~~~~ 218 (336)
+.|++.|++.+...+.....+.+|+| ++||.+.|+...+.++|.++ +++....+ +|+..+++.+++.++. ++.++
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999997 78999999999999999975 55555444 7888888777666555 33444
Q ss_pred ccc--CchhHHHHcCChHHH
Q 019729 219 FIP--ESPRWLAKMGMTEDF 236 (336)
Q Consensus 219 ~~~--e~~~~~~~~~~~~~~ 236 (336)
+++ +.+++..++++.+++
T Consensus 204 ~vr~p~~~~~~~~~~~~~~~ 223 (591)
T PTZ00207 204 FMRLPPFHLTGYQEKHLDEE 223 (591)
T ss_pred heeCCcchhhcccccCCCHH
Confidence 444 333433333333333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-17 Score=140.16 Aligned_cols=242 Identities=21% Similarity=0.209 Sum_probs=190.3
Q ss_pred HHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (336)
..+..+.+..+..--..+...|.++.+.+++|+|.+..|+++++..+...+.+++..++..|+|.++.+.+++++.+++.
T Consensus 12 ~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~ 91 (395)
T COG2807 12 LLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333344445555677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh----ccc-hhHHHHH
Q 019729 130 LIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----LFV-NWRVLAV 204 (336)
Q Consensus 130 ~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~-~w~~~~~ 204 (336)
++-... +.+.++.+-.+.|.+.+......++++.+.|| |+-+..+|+|....++|..+++.+. ... +||....
T Consensus 92 ~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 92 LIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 999887 66778889999999999999999999999998 6679999999998888777776655 333 7999999
Q ss_pred HhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHH
Q 019729 205 LGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPL 284 (336)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (336)
+-+.++++.++.|+.- ..|. +. ...+.+..+...+++++.-+.
T Consensus 170 ~WAl~allAl~~WlPq--~~r~-----~~-----------------------------~~~~~~~~~~~~vw~~~~aW~- 212 (395)
T COG2807 170 FWALLALLALLIWLPQ--ALRE-----QA-----------------------------ASIATKLVSVRKVWRSPLAWQ- 212 (395)
T ss_pred HHHHHHHHHHHHHhhh--cccc-----cc-----------------------------cccccccccccccccCchhHH-
Confidence 9888888887776532 1110 00 000111222344666654333
Q ss_pred HHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhhh
Q 019729 285 MIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVEALNST 333 (336)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~g~~ 333 (336)
..+++..+...+|....|+|.++.|.|+|+.+++.++++..+++..
T Consensus 213 ---vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~ 258 (395)
T COG2807 213 ---VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLP 258 (395)
T ss_pred ---HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHH
Confidence 3445556666788999999999999999999999999888876643
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=159.95 Aligned_cols=279 Identities=14% Similarity=0.116 Sum_probs=193.0
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.-+-|.+++...+......-....++...+.++++++.+.++.+|+.++......+..++.+.+.||+|.|.+.++|.++
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 33455555555555443333344555678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHH-HHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hh
Q 019729 125 NIIGWLIISFSKDSSFLFMG-RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~-r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w 199 (336)
..++.++.+++++.+++++. .++.|+|.|+.+......+..+|. |+|+.+.|+...+.++|.++-|.+...+ ||
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~ 199 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW 199 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence 99999999999999887775 799999999999999999998886 7899999999999999999988888666 99
Q ss_pred HHHHHHhHHHHHHHHHHhhcccC-chhHHHHcCChHHHHHHHH-----------HHhC-CChhhH----HHHHHHHHHhh
Q 019729 200 RVLAVLGVLPCTLLIPGLFFIPE-SPRWLAKMGMTEDFESSLQ-----------VLRG-FDTDIS----IEVNEIKRSVA 262 (336)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~----~~~~~~~~~~~ 262 (336)
|+.+++.+.+.+-.++.....++ ++..... .++..+..+ +... .+.... ....+.++..+
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPD 276 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCc
Confidence 99998877776666555444333 2221000 000000000 0000 000000 00111111111
Q ss_pred hhc-hhhhhhH----HHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHHhh
Q 019729 263 SSS-RRTAIRF----AELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVEALN 331 (336)
Q Consensus 263 ~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~g 331 (336)
+.. ...+... .++++++ .++.+.+.......+++....++|.+.++.|++..+++.++++.++..
T Consensus 277 ~~~~~~~~~~~~~~d~~ll~~~----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~ 346 (509)
T KOG2504|consen 277 KWRNSPLQAFLSMLDLSLLKDP----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSD 346 (509)
T ss_pred cccccchhhhhhhhhHHHHcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhh
Confidence 111 0111112 4666663 344445555555566788999999999999999999999887766644
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=154.65 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=130.5
Q ss_pred hhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-----chhHH-HHHHHHHHHHHHHHHHh
Q 019729 61 QFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-----GRKGS-LMIAAVPNIIGWLIISF 134 (336)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~ 134 (336)
..|.......+.+|.+.++.|.+.++.+.+ +.....+ ++.+++|+++||+ |||+. ++.+.++.+++...+++
T Consensus 23 ~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~ 100 (491)
T PRK11010 23 ASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF 100 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 344555667778888889999999998886 3333333 6899999999999 99885 66777777777777766
Q ss_pred h---cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc-----cchhHHHHHHh
Q 019729 135 S---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-----FVNWRVLAVLG 206 (336)
Q Consensus 135 ~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-----~~~w~~~~~~~ 206 (336)
. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++. ..|||..|++.
T Consensus 101 ~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 101 LEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 5 367788889999999999999999999999999999999999999999999888876553 34899999998
Q ss_pred HHHHHHHHHHhhcccCch
Q 019729 207 VLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 207 ~~~~~~~~~~~~~~~e~~ 224 (336)
++..++..+..+++||++
T Consensus 181 a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 181 AALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 887777766655678764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=169.56 Aligned_cols=221 Identities=15% Similarity=0.103 Sum_probs=152.7
Q ss_pred HhhhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 76 IISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI---AAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 76 ~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
+..+.+.+. ...++..+++.+.+.+.++++|+++||+|||+++.. +.+..++..+.....+++++++++|+++|++
T Consensus 42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH 121 (1140)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333344333 346888889999999999999999999999997643 2222233333333458899999999999999
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccCchhHH
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (336)
.+...++..+++.+++|+++|++++++.+++..+|.++||.+++.+ +|++.|+..++..++.+++.+++|+++..
T Consensus 122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 200 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA- 200 (1140)
T ss_pred HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC-
Confidence 9999999999999999999999999999999999999999999876 89988866666666666666677765420
Q ss_pred HHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHH
Q 019729 228 AKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSS 307 (336)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (336)
+... + .+. ...++....++.+.+++.++...+...+.++. ...+..++|
T Consensus 201 --~~~~-~--------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p 249 (1140)
T PRK06814 201 --APDL-K--------------IDR----------NIIRSTITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLP 249 (1140)
T ss_pred --CCCC-e--------------ecc----------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhH
Confidence 0000 0 000 00001122455666666655554444333332 235666788
Q ss_pred HHHHhc-CCCCcchhHHHHHHH
Q 019729 308 NIFANA-GKINISLDVILPIVE 328 (336)
Q Consensus 308 ~~~~~~-g~s~~~~~~~~~~~~ 328 (336)
.++.+. |.++...+.+++...
T Consensus 250 ~~~~~~~g~~~~~~g~~~~~~~ 271 (1140)
T PRK06814 250 LLAKETLGGDENVATLFLAVFS 271 (1140)
T ss_pred HHHHHHcCCchHHHHHHHHHHH
Confidence 888765 888888877765443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=154.90 Aligned_cols=171 Identities=17% Similarity=0.297 Sum_probs=135.8
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
++.+..+...++......+........++.+..++|-+ +...|+.+...++..++.++.|.++|.||||++++.+.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 34444444445444444455555666788899999965 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHH
Q 019729 126 IIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRV 201 (336)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~ 201 (336)
.++.++++.++|...++++..+.|++.|.... ....++|..|.|.|+...++..........+++.++..+ +|||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 99999999999999999999999999876664 456689999999999888777666555555566666433 8999
Q ss_pred HHHHhHHHHHHHHHHhh
Q 019729 202 LAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (336)
.|++.++...+.++..+
T Consensus 198 ~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998887766655433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=165.05 Aligned_cols=227 Identities=13% Similarity=0.054 Sum_probs=150.8
Q ss_pred hhHhHhhhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---hhcchhHHHHHHH
Q 019729 72 TQAEIISDLKLTIS--EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDSSFLFMGRL 146 (336)
Q Consensus 72 ~~~~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~ 146 (336)
..+.+..+++.+.+ ..+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. ..++++.+++.|+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~ 111 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTF 111 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34445556666543 468999999999999999999999999999999998876655554433 4578899999999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-h------------hHHHHHHhH-HHHHH
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-N------------WRVLAVLGV-LPCTL 212 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~------------w~~~~~~~~-~~~~~ 212 (336)
+.|++.+...++..+++.|++|+++|++++++...+..+|.++++.+++.+ . |++.+.+.. ...++
T Consensus 112 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (1146)
T PRK08633 112 LLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVL 191 (1146)
T ss_pred HHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888655 1 233333333 23333
Q ss_pred HHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHH
Q 019729 213 LIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLV 292 (336)
Q Consensus 213 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (336)
.++..+.+||+|.....+. ++ . ...........++.+++++..+..++...+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~--~~-------------~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (1146)
T PRK08633 192 GLIFAYRLPKVPAAAPEVF--DK-------------K-----------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFW 245 (1146)
T ss_pred HHHHHhcCcCCCCCCcccc--cc-------------c-----------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4445556777754210000 00 0 00000111223555666665554444333333
Q ss_pred HHHhhchHHHHHhHHHHHHh-cCCCCc-chhHHHHHHH
Q 019729 293 LQQLSGINGVLFYSSNIFAN-AGKINI-SLDVILPIVE 328 (336)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-~g~s~~-~~~~~~~~~~ 328 (336)
+. .+.+..+.|.++.+ .|++.. ..+++++...
T Consensus 246 ~~----~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ 279 (1146)
T PRK08633 246 FI----SQLAQANFPAYAKEVLGLDNTFQVQYLLAASA 279 (1146)
T ss_pred HH----HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 22 23455566766654 488887 6666654443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-16 Score=143.42 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=115.6
Q ss_pred cccchhhHh-HhhhccCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHH-HHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSL-MIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 67 ~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
....|.+|. +.+++|.+.++.|++.+...+ +..++.+++++ +||+||||.+ ..+.++.+++..+.+++++++.+++
T Consensus 32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (393)
T PRK15011 32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLF 110 (393)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455554 578899999999999776555 66666666666 9999998875 4556666677778888888888776
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcch--hHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH-H
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRG--SLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-G 216 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~ 216 (336)
.+.+.|...+...+....++.++.+++.|. ...++.+.+..+|.+++|.+++.+ |||..|++.++..++..+ .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 111 VGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 666555555577888888888888766553 345778888888999998888654 999999988877666544 4
Q ss_pred hhcccCch
Q 019729 217 LFFIPESP 224 (336)
Q Consensus 217 ~~~~~e~~ 224 (336)
++++||.+
T Consensus 191 ~~~~~~~~ 198 (393)
T PRK15011 191 WLFLPSMR 198 (393)
T ss_pred HhhcCccC
Confidence 45678764
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=144.45 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=113.6
Q ss_pred cccccchhhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhhc----
Q 019729 65 TCGYSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFSK---- 136 (336)
Q Consensus 65 ~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~---- 136 (336)
......|.+|.+ .+++|.++.+.+++.++..++..+++++.|+++||+|||+.++.+....+++.... .+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (396)
T TIGR00882 17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQS 96 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334455666654 56689999999999999999999999999999999999999988776665443322 1121
Q ss_pred -chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHH
Q 019729 137 -DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTL 212 (336)
Q Consensus 137 -~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~ 212 (336)
....+++.+++.|++.+...+....+..+..+ +++...+.......+|..++|.+++.+ +||..|++.+++.++
T Consensus 97 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~ 174 (396)
T TIGR00882 97 NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALI 174 (396)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHH
Confidence 22344566888888888878888777777543 344566666677778888888887654 899999998887776
Q ss_pred HHHHhhc-ccCc
Q 019729 213 LIPGLFF-IPES 223 (336)
Q Consensus 213 ~~~~~~~-~~e~ 223 (336)
..+..++ .||+
T Consensus 175 ~~~~~~~~~~~~ 186 (396)
T TIGR00882 175 LMLLLMFAKPKA 186 (396)
T ss_pred HHHHHHHhCCCC
Confidence 6554444 3443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=145.48 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=130.3
Q ss_pred chhhHhH-hhh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 019729 70 SPTQAEI-ISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (336)
Q Consensus 70 ~~~~~~~-~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 145 (336)
.+.+|.+ .++ +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+++.|
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 109 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGL 109 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 3455555 444 89999999999999999999999999999999 8999999999999999999999988888888999
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCc---chhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
++.|++.|...+...+++++++|+++ |+.+.++++.+.++|.++||.+++.+ +|++.|++.++..++.++..+
T Consensus 110 ~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 110 GTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred HHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764 88899999999999999999988765 899999987765555544433
Q ss_pred c
Q 019729 219 F 219 (336)
Q Consensus 219 ~ 219 (336)
+
T Consensus 190 ~ 190 (475)
T TIGR00924 190 A 190 (475)
T ss_pred H
Confidence 3
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=149.01 Aligned_cols=175 Identities=12% Similarity=0.093 Sum_probs=134.0
Q ss_pred CCChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHH
Q 019729 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIA 121 (336)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~ 121 (336)
++++..+.+...-..-.+.++... ......+.+++|++.++.+++.+++.....+..+++|+++|| +||||+++++
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~---~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQ---GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 344555555444444433332222 223444678899999999999999998888889999999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcchhH-HHHHHHHHHHHhhhhhhhHhHHHHhccCCCc--chhHHhHHHHHHHHHHHHHHHhhccc-
Q 019729 122 AVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV- 197 (336)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~- 197 (336)
.++++++.++++++++... ++++|+++|++.|...+...+++.|.+|+++ |+.+.+++..+.++|..++|.+++.+
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876444 5578999999999999999999999998874 47788888888888888887777554
Q ss_pred ---hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 198 ---NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 198 ---~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
|||+.|++.++..++.++.+...
T Consensus 168 ~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 168 DKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998765444444433333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-18 Score=145.56 Aligned_cols=142 Identities=14% Similarity=0.207 Sum_probs=130.7
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHh
Q 019729 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (336)
Q Consensus 81 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 160 (336)
+-+.++.|++.+...+.+++..++.|.+.||+|+|..+++|++.+..+.+++++.+++++++++|.++|+|.+...+...
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgl 181 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGL 181 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhH
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCc-chhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 161 VYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 161 ~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
+++++.+|.++ |++++|+.-.+.++|..+||++++.+ |.+.+|++.++++++-..+.+++-|
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999765 79999999999999999999999877 9999999999998888776665433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-16 Score=140.68 Aligned_cols=152 Identities=17% Similarity=0.082 Sum_probs=100.8
Q ss_pred ccchhhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---hhcch-----
Q 019729 68 YSSPTQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---FSKDS----- 138 (336)
Q Consensus 68 ~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~----- 138 (336)
...+..|.+ .+++|++..+.+++.++..++..+++++.|+++||+|||++++++..+.+++..... .++..
T Consensus 28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (420)
T PRK09528 28 SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNIL 107 (420)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 556999999999999999999999999999999999999999887666554432211 11111
Q ss_pred hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHH
Q 019729 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 139 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~ 215 (336)
...++.+++.|.+.....+....+..+ . .++++...+.......+|..++|.+++.+ +|++.|++.++..++.++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~ 185 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLV 185 (420)
T ss_pred HHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHH
Confidence 111222333333332333333333322 2 24567778888888888888888888766 899999988877776665
Q ss_pred Hhhccc
Q 019729 216 GLFFIP 221 (336)
Q Consensus 216 ~~~~~~ 221 (336)
..++++
T Consensus 186 ~~~~~~ 191 (420)
T PRK09528 186 LLFFAK 191 (420)
T ss_pred HHhccc
Confidence 555543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=137.80 Aligned_cols=160 Identities=15% Similarity=0.246 Sum_probs=123.5
Q ss_pred cccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHHHH-HHHHHHHHHHHHhhcchh
Q 019729 65 TCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLMIA-AVPNIIGWLIISFSKDSS 139 (336)
Q Consensus 65 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~ 139 (336)
......+..+.+.+++|.+....+++..+..+...+.+++.|+++| |+||||+++++ .+..+++.++++++++..
T Consensus 19 ~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~ 98 (477)
T TIGR01301 19 GWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG 98 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh
Confidence 3344455666678899999999999999999999999999999999 59999998875 566666667777765532
Q ss_pred -----------------HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcc--hhHHhHHHHHHHHHHHHHHHhhccc---
Q 019729 140 -----------------FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR--GSLGSVNQLSVTIGIMLAYLLGLFV--- 197 (336)
Q Consensus 140 -----------------~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~--- 197 (336)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+...++|.++|+.+++..
T Consensus 99 ~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 99 HLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 223333445557788888999999999998876 5789999999999999998887543
Q ss_pred ----------------hhHHHHHHhHHHHHHHHH-HhhcccCch
Q 019729 198 ----------------NWRVLAVLGVLPCTLLIP-GLFFIPESP 224 (336)
Q Consensus 198 ----------------~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 224 (336)
+.+..|++.+++.++..+ ..+.++|.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 456788888777766644 456688875
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=131.27 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=105.6
Q ss_pred chhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 70 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
.+..+.+.+++|++..+.|++.++..++..++++++|.++||+|| |+++.++.++.+++..+..+.++++.+++.|++.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLAN 102 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345556778899999999999999999999999999999999965 7788888888888888888889999999999999
Q ss_pred HHHhhhhhhhHhHHHH--------hccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH
Q 019729 149 GFGVGVISYTVPVYIA--------EIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 216 (336)
|++.+...+...++.. |......|.+..|. +|.+++|.+++.+ .|+ .|++.++..++..++
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 103 SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF 175 (418)
T ss_pred HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH
Confidence 9987666665554432 22222334444442 3444455554433 344 345555555555555
Q ss_pred hhcccCch
Q 019729 217 LFFIPESP 224 (336)
Q Consensus 217 ~~~~~e~~ 224 (336)
.+++||+|
T Consensus 176 ~~~~~e~~ 183 (418)
T TIGR00889 176 ALTLPDIP 183 (418)
T ss_pred HhcCCCCC
Confidence 66788875
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-14 Score=129.08 Aligned_cols=237 Identities=10% Similarity=-0.047 Sum_probs=156.7
Q ss_pred HHHHhhhhhhccccccchhhHhHhhhccCCchhHHHH--HHHHHHHHHHHHHHH-HHHHhhhchhHHHHHHHHHH-HHHH
Q 019729 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIF--GSLANVGAMVGAIAS-GQIAEYIGRKGSLMIAAVPN-IIGW 129 (336)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~Grr~~l~~~~~~~-~~~~ 129 (336)
.+...++..|...+...|.+|.+.++.|.|.++.|.+ .++..+...+.+++. ++..||+||||..++...+. +++.
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~ 84 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACL 84 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHH
Confidence 3444557777888888899999999999999999997 466688888888888 55799999999876655332 2222
Q ss_pred HHHH-h--hcc-hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh----ccchhHH
Q 019729 130 LIIS-F--SKD-SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG----LFVNWRV 201 (336)
Q Consensus 130 ~~~~-~--~~~-~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~~~w~~ 201 (336)
...+ + ..+ ..+++...++.++......+....+..|..++++++...+....+..+|.++++... ...+||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~ 164 (390)
T TIGR02718 85 ASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP 164 (390)
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 2222 1 222 233444455566677777777888889999888888888888888888888888644 3459999
Q ss_pred HHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccch
Q 019729 202 LAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYW 281 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (336)
.|++.+++.++..+..++++|+++. +.+. ++......++.+|++..
T Consensus 165 ~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~-------------------------------~~~~~~~~~~~l~~~~~ 210 (390)
T TIGR02718 165 AFLLVACVPLASLVCVLWLKDRAVA---SPEA-------------------------------PLARRASLFRFFRRPLA 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcC---cccc-------------------------------chhhHHHHHHHHcCcCH
Confidence 9999888777665555555433210 0000 00011235566777665
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHH
Q 019729 282 FPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDVILPIVE 328 (336)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 328 (336)
+..+....+... +......+.+.++++.|+++.+.+.+.....
T Consensus 211 ~~~~~~~~l~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~ 253 (390)
T TIGR02718 211 WSLLALALLSAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGG 253 (390)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHH
Confidence 544443333222 2334555677888888999998888765443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-15 Score=141.22 Aligned_cols=137 Identities=16% Similarity=0.081 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhcc
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 167 (336)
.+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++.+++.|++.++.++...++++|++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466777899999999999999999999999999999999999999888888888899999988889999999999999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHHHhhcccCch
Q 019729 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (336)
|++.|++++|+.+....+|.+++|.+++.+ +...++++.+++.+++.++.+++||+.
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999998755 345677777777777777777789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=135.11 Aligned_cols=141 Identities=16% Similarity=0.276 Sum_probs=117.2
Q ss_pred HhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHH
Q 019729 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFG 151 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~ 151 (336)
..+.+++|++.++.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+++.|++.|++
T Consensus 46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig 125 (500)
T PRK09584 46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG 125 (500)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34568899999998888888776666667899999999 5999999999999999999888874 456677889999999
Q ss_pred hhhhhhhHhHHHHhccCCCc--chhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHH
Q 019729 152 VGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 214 (336)
.|...+...+++.|++|+++ |..+.++++.+.++|..++|.+++.+ |||+.|++.++..++++
T Consensus 126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 99999999999999998654 44577888899999999999888765 89999998776555443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=128.95 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=121.0
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 155 (336)
+++++|.+..+.+++.++..++..++.++.|+++||+|||+.+..+.+...+........++++.+++.+++.+++.|..
T Consensus 243 l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~ 322 (393)
T PRK15011 243 IINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL 322 (393)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 55678999989998888888888899999999999999999888777666665555555677777888899988888888
Q ss_pred hhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
.+....+..|.+|+ +|+++.++++....+|..+++.+++.+ +|+..+++.+++.++.++..+++||
T Consensus 323 ~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 323 GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888888999985 599999998888888888888888665 8999999888888887777777665
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-15 Score=113.67 Aligned_cols=132 Identities=23% Similarity=0.373 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCC
Q 019729 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (336)
Q Consensus 91 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 170 (336)
.+...++..++.++.|++.||+|||+.+..+..+..++.+.....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHh-hcccC
Q 019729 171 MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL-FFIPE 222 (336)
Q Consensus 171 ~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~-~~~~e 222 (336)
+|++..+..+....+|..+++.+.+.+ +|++.+++.++..++..+.. ++.||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999998888655 79998888877766665443 34454
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=131.45 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=115.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEGFGVG 153 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g 153 (336)
+.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||+++++.++.+++.++++..+ +...+.+...+.+++.|
T Consensus 36 L~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 36 LTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 4667899999999999999999999999999999999 999999999999999887776543 22334444455556677
Q ss_pred hhhhhHhHHHHhccCCC--cchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH
Q 019729 154 VISYTVPVYIAEIAPQN--MRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 216 (336)
...+...++++|.+|++ +|..+.++.+.+.++|+.++|.+.+.+ ||++.|.++++..+++++.
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~ 184 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI 184 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence 77787889999999976 699999999999999999999998766 8999999876655544443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=128.50 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=130.8
Q ss_pred HHhhhhhhccccccchhhHhHhhh--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHH
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLII 132 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~ 132 (336)
.+..+..+...+.+.+..-.+.++ .+.+.+-.|++.++..++.+++++++|+.+.|.+. |+.++++.++..+++++.
T Consensus 40 ~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY 119 (488)
T KOG2325|consen 40 LLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLY 119 (488)
T ss_pred HHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHH
Confidence 333444445555555544334445 66677778999999999999999999999999996 889999999999999988
Q ss_pred -Hhh---c-chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----------
Q 019729 133 -SFS---K-DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---------- 197 (336)
Q Consensus 133 -~~~---~-~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---------- 197 (336)
++. + ..+.++++|++.|+|. +..++.-+|+++....++|.++++....+..+|.++||.++..+
T Consensus 120 ~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i 198 (488)
T KOG2325|consen 120 LALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMI 198 (488)
T ss_pred HHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEE
Confidence 332 3 5678999999999997 56778889999999999999999999998888888888887433
Q ss_pred -------hhHHHHHHhHHHHHHHHH-HhhcccCchh
Q 019729 198 -------NWRVLAVLGVLPCTLLIP-GLFFIPESPR 225 (336)
Q Consensus 198 -------~w~~~~~~~~~~~~~~~~-~~~~~~e~~~ 225 (336)
-+..+-|+.++..++..+ +.+++.|.++
T Consensus 199 ~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 199 LPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred cCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 134667777777777655 4456777654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=128.26 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=131.1
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAV 123 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 123 (336)
..+..|..-.+..++..+. ....+.+..+..-|+...+++..+..+-..+.++++|.++||++||++++.+.+
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~-------~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~ 83 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQ-------TVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQL 83 (524)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 3344454444444443332 233444555666788889999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhh-----cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-
Q 019729 124 PNIIGWLIISFS-----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV- 197 (336)
Q Consensus 124 ~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~- 197 (336)
+.++..+..++. .+.+.+++.-++.|++.+...|...+++.|..|+++...++++.+...+++.++||.+++.+
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 776655444332 36788889999999999999999999999999999999999999999999999999988765
Q ss_pred ---hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 198 ---NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 198 ---~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
|-.+.|++.++..++.++.....
T Consensus 164 a~~G~~~~f~inalsfl~~i~~l~~~ 189 (524)
T PF05977_consen 164 AFFGAAAAFLINALSFLISILALLRW 189 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66778887766655554444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=131.82 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=121.7
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 019729 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (336)
Q Consensus 79 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 158 (336)
+.+.+..+.+++.++..++..++.+++|++.||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677899999999999999999999999999999999999999988888888889988888999999998888888
Q ss_pred HhHHHHhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-hhcccCch
Q 019729 159 VPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (336)
...++.|.+|++.|++..+. ++....+|.++++.+.+.+ ||+..|++.+++.++..+. .+.+++.+
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88999999999999987765 6777888888888887665 8999999877776665443 33444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=125.31 Aligned_cols=143 Identities=12% Similarity=0.041 Sum_probs=121.1
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEG 149 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G 149 (336)
..+.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (377)
T TIGR00890 227 LYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVF 306 (377)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Confidence 3445667789888889999999999999999999999999999999999998888888877776643 33445678888
Q ss_pred HHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHH
Q 019729 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLI 214 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~ 214 (336)
++.+...+..+.++.|.+|+++|++..|+.+....+|..++|.+.+.+ ||++.|++.+++.++++
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 307 FTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 888888888889999999999999999999999999999999887654 89999988877766543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=125.01 Aligned_cols=150 Identities=10% Similarity=0.072 Sum_probs=125.4
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..|.+.++.|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|++
T Consensus 242 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 321 (406)
T PRK11551 242 WLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321 (406)
T ss_pred HHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999999999999887777777777777777777777788888998
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhhccc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLFFIP 221 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~~~~ 221 (336)
.+...+...+++.|.+|+++|++..|+.+....+|.+++|.+++.+ +|...++..+.+.++..+..+++.
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999999999999999998776 456666666666655555544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=129.44 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=117.2
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hchhH-HHHHHHHHHHHHHHHHHhhcc------hhH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKG-SLMIAAVPNIIGWLIISFSKD------SSF 140 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~ 140 (336)
..+.+.+++|+++.+.|++.++..+...+..|+.|+++|| +|||| .++++....+++.+++...++ ...
T Consensus 22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3445777899999999999999999999999999999998 68744 566777888888877776654 345
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHhcc-CCCcchhHHhHHHHHHHHHHHHHHHhh----c-------cchhHHHHHHhHH
Q 019729 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----L-------FVNWRVLAVLGVL 208 (336)
Q Consensus 141 ~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~----~-------~~~w~~~~~~~~~ 208 (336)
+++.+++.+++.+.......++..|.. ++++|++..++.+.+..+|..+++.+. . ..+||+.+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~ 181 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLAL 181 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHH
Confidence 666788888888877777888889987 468899999988877777765543332 1 2379999888887
Q ss_pred HHHHHHH-HhhcccCch
Q 019729 209 PCTLLIP-GLFFIPESP 224 (336)
Q Consensus 209 ~~~~~~~-~~~~~~e~~ 224 (336)
+.++..+ ..++++|++
T Consensus 182 l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 182 IGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHcCCEecC
Confidence 7766644 445567653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-13 Score=124.89 Aligned_cols=152 Identities=14% Similarity=0.263 Sum_probs=122.7
Q ss_pred hHhHhhhccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhH
Q 019729 73 QAEIISDLKLTI--------SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSF 140 (336)
Q Consensus 73 ~~~~~~~~g~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~ 140 (336)
.+.+.++.|.++ +..+.+.++..++..++.++.|+++||+|+|+++.++.++.+++..+..... +.+.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~ 310 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYAL 310 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 344555555443 5678999999999999999999999999999999999999988877666632 2356
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHH-HHHHHHHHHHHHhhccc----------hhHHHHHHhHHH
Q 019729 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----------NWRVLAVLGVLP 209 (336)
Q Consensus 141 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~ 209 (336)
+++.+++.|++.+...+....++.|++|+++|+++.|+.+ ....+|.++||.+++.+ ||+..|.+.+++
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~ 390 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGY 390 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 6778999999999888999999999999999999999997 67788999998888654 489999888777
Q ss_pred HHHHHH-HhhcccCch
Q 019729 210 CTLLIP-GLFFIPESP 224 (336)
Q Consensus 210 ~~~~~~-~~~~~~e~~ 224 (336)
.++..+ ..++++|+.
T Consensus 391 ~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 391 IAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 666644 455667763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-13 Score=120.38 Aligned_cols=153 Identities=22% Similarity=0.343 Sum_probs=135.3
Q ss_pred ccchhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 019729 68 YSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (336)
Q Consensus 68 ~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 145 (336)
......|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 272 (352)
T cd06174 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL 272 (352)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 334455555555 4899999999999999999999999999999999999 99999999999999999988888899999
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.+ +|+..+++.+++.++..+..+++
T Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 351 (352)
T cd06174 273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351 (352)
T ss_pred HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999999999999988655 89999999888888776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.7e-13 Score=119.72 Aligned_cols=146 Identities=15% Similarity=0.226 Sum_probs=121.5
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 155 (336)
+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++.+..
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 305 (375)
T TIGR00899 226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL 305 (375)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999998888887788889999999999999999998887776666666666677777888899999999888
Q ss_pred hhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 156 SYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
.+....++.|..|+ +|+.+.++++....+|..++|.+++.+ +|+..+++.+++.+++.+...+++|
T Consensus 306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 88888999999875 567999999988889999998888654 7999999988888877776665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=114.36 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=130.0
Q ss_pred CCChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 019729 43 DGSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAA 122 (336)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 122 (336)
+-.+++|.++++.++..+..++....+++........|| +.+..-|++.++.+.+....+++-|+.||+|-|..++++.
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 345678999999999999998888888888877888888 7778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc------chh--HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 123 VPNIIGWLIISFSK------DSS--FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 123 ~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
.+.+++..+-..+. .++ ....+..+.+.++-........+..-|||+++|..+..+-.++..+|.+++..+.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 99999998877653 233 5567788888887666666677888899999999999998888888888887776
Q ss_pred ccc
Q 019729 195 LFV 197 (336)
Q Consensus 195 ~~~ 197 (336)
..+
T Consensus 197 pil 199 (480)
T KOG2563|consen 197 PIL 199 (480)
T ss_pred cee
Confidence 444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=120.55 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=122.9
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..+.+..+.|.+ +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 238 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 315 (399)
T PRK05122 238 FITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFG 315 (399)
T ss_pred HHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344444555653 456667788889999999999999999999999999888888888888888888888889999999
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+ ||++.+++.+++.+++++..++++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 316 FSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988888888889999999999999999999988888877776554 89999998888777776665555443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=123.54 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=109.0
Q ss_pred hhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH--HHHhhcchhHHHHHHHH
Q 019729 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL--IISFSKDSSFLFMGRLL 147 (336)
Q Consensus 71 ~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~r~l 147 (336)
...|. +++++|++..+.++..++..++..++.+++|+++||+|||+.+.....+..++.. .....++...+.+.+++
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34554 4577999999999999999999999999999999999999887665444433322 22234556566677888
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH-HHHHHHHhhcc----------------chhHHHHHHhHHHH
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLF----------------VNWRVLAVLGVLPC 210 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~----------------~~w~~~~~~~~~~~ 210 (336)
.|++...........+.|.+|++.|+++.|+.+....+ |.+++|.+.+. .+|+..|++..++.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 88655444444456777999999999999999888776 65666665532 25899998887777
Q ss_pred HHHHHHhhc
Q 019729 211 TLLIPGLFF 219 (336)
Q Consensus 211 ~~~~~~~~~ 219 (336)
+++.+..++
T Consensus 439 ~~~~~~~~~ 447 (467)
T PRK09556 439 IGCICLMAI 447 (467)
T ss_pred HHHHHHHHH
Confidence 776555443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.3e-13 Score=121.45 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=111.3
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hc-chhHHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-DSSFLFMGRLLEGFG 151 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-~~~~~~~~r~l~G~~ 151 (336)
+.+++|.+......+..+..+...++.++.|+++||+|||++++.+.++.+++.+.+.. .. +...+++..++.|++
T Consensus 277 ~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (438)
T PRK09952 277 STQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIA 356 (438)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 45678888776666666667777889999999999999999988887766555433322 22 334444556777888
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHH-HHHHHHHHHHHHHhhccc------hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
.+...+..+++++|.+|++.|+.+.++. +.+..+|+.++|.+.+.+ +|+..+.+.++++++..+..+.++|+
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8888888999999999999999999984 455568888888887654 48888888888888777766666764
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-12 Score=113.38 Aligned_cols=226 Identities=17% Similarity=0.203 Sum_probs=148.9
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-RKGSLMIAAVPNIIGWLIISFSKDSSFLF 142 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (336)
+..+...|.++.+.++.|+|..+.|.+.++..+...++++++|.++||++ +|+.+.++.++.++..+.....++++.++
T Consensus 16 ~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 16 FAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 34455667888899999999999999999999999999999999999986 68888888888887777777888888888
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHH-----Hhhccchh---HHHHHHhHHHHHHHH
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY-----LLGLFVNW---RVLAVLGVLPCTLLI 214 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-----~~~~~~~w---~~~~~~~~~~~~~~~ 214 (336)
+.-++..+......|...++..+... +++.-.|-.-.++++|-+++. .+.+..++ ...+++.+...++..
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~ 173 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA 173 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence 88888888888888888888888875 344444444444444444442 22233222 245556555555555
Q ss_pred HHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHH
Q 019729 215 PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQ 294 (336)
Q Consensus 215 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (336)
...+.+|++|.. +. . .++.++....+..+++|+|.....++...+..
T Consensus 174 ~~~l~lp~~~~~---~~-~---------------------------~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~-- 220 (400)
T PF03825_consen 174 GFALFLPKTPPK---RS-A---------------------------KESVKKLLGLDALKLLKNPRFLVFLLAAFLIG-- 220 (400)
T ss_pred HHHHhCCCCccc---cc-c---------------------------CCCcccccchHHHHHhcCccHHHHHHHHHHHH--
Confidence 555667877620 00 0 00001111223346777766544433332222
Q ss_pred HhhchHHHHHhHHHHHHhcC-CCCcchhHHHHH
Q 019729 295 QLSGINGVLFYSSNIFANAG-KINISLDVILPI 326 (336)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~ 326 (336)
........|.+.++++.| .+....+.+.++
T Consensus 221 --~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l 251 (400)
T PF03825_consen 221 --ISHAAYYTFFSIYLQELGGYSGSTIGILWAL 251 (400)
T ss_pred --HHHHHHHHHHHHHHHHcccchhhHHHHHHHH
Confidence 234567778899999997 666666655443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=118.93 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=104.1
Q ss_pred hhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhH--HHH------HHHHHHHHHHHHHHhhcchhHH
Q 019729 71 PTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKG--SLM------IAAVPNIIGWLIISFSKDSSFL 141 (336)
Q Consensus 71 ~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~~ 141 (336)
...|. +.+++|.+..+.+++.++..++..++.++.|+++||+|||+ ... .+.++..+..+.....++.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA 315 (399)
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 34444 45668999999999999999999999999999999999996 111 1111111111111112233333
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHHHHHHH
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~~ 216 (336)
+....+.+++.+ ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+ + |+..+++.+++.++..+.
T Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 333444444444 7888999999999999999999999999999999999888765 5 898888887777666544
Q ss_pred h
Q 019729 217 L 217 (336)
Q Consensus 217 ~ 217 (336)
.
T Consensus 395 ~ 395 (399)
T TIGR00893 395 Y 395 (399)
T ss_pred H
Confidence 3
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-15 Score=140.04 Aligned_cols=262 Identities=16% Similarity=0.168 Sum_probs=3.0
Q ss_pred hhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh----
Q 019729 60 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---- 135 (336)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---- 135 (336)
+......++....++.+++.|+++.++.|++.+.+-++.++..++..++.+|..|-|.+-+|.++.+++++++++=
T Consensus 13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 3336677777888899999999999999999999999999999999999999989899999999999999887651
Q ss_pred --------c--------------------------------------chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCC
Q 019729 136 --------K--------------------------------------DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 169 (336)
Q Consensus 136 --------~--------------------------------------~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~ 169 (336)
. -+..++++.++.|+|....++...+|+-|..++
T Consensus 93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 0 024677789999999999999999999999999
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHhhccc--------------------------hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 170 NMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
++-+..+|+......+|.++|..+++.. .|..-|++.+++.++..+.++++|+.
T Consensus 173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999998888533 15555666666666666666666654
Q ss_pred hhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHH--hhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHH
Q 019729 224 PRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRS--VASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGING 301 (336)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (336)
-+. ..+.++.++ .++.+.++ ...++.++.+.. ..+..++-....+++++| ++++...+....+.....+
T Consensus 253 lp~---~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N----p~f~~~~la~~~~~~~~~G 323 (539)
T PF03137_consen 253 LPG---TSERQEEKE-SSERKEED-SDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN----PVFMCLILAGVFESFIVSG 323 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC---cccccchhh-hhhcchhh-hhhhcccccccccchhhhhhhHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHH
Confidence 221 100000000 00000000 000000000000 000111122334444444 5556666666666667788
Q ss_pred HHHhHHHHHHhc-CCCCcchhHHHHHHHHh
Q 019729 302 VLFYSSNIFANA-GKINISLDVILPIVEAL 330 (336)
Q Consensus 302 ~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~ 330 (336)
+..|.|.|++.. ++++..++.+.++..+.
T Consensus 324 ~~tF~pKylE~QF~~sas~A~~l~G~v~ip 353 (539)
T PF03137_consen 324 FATFLPKYLESQFGLSASQASLLTGIVSIP 353 (539)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhhhcc
Confidence 999999998755 99999998888765553
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=119.79 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=108.4
Q ss_pred hhhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH--HHHHh--hcchhHHHHHH
Q 019729 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW--LIISF--SKDSSFLFMGR 145 (336)
Q Consensus 71 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r 145 (336)
...|.+. +++|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+++..
T Consensus 240 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (394)
T TIGR00883 240 TYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV 319 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3445554 6789999999999999999999999999999999999998776554444332 22222 24566667778
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHH
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCT 211 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~ 211 (336)
++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+ + |+..++......+
T Consensus 320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 889999889999999999999999999999997 4566677888888887655 5 7777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-13 Score=123.38 Aligned_cols=145 Identities=11% Similarity=0.028 Sum_probs=119.0
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHH--HHHHHHHHHHHHHhhcchhHHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMI--AAVPNIIGWLIISFSKDSSFLFMGRL 146 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (336)
..++.+.++.|.+..+.+++.++..++..+++++.|+++||. ++|+...+ +.++.+++.+++...++++.+++.++
T Consensus 262 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 262 IFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 345666677899999999999999999999999999999973 34443333 33444455556667788888888999
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHH
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~ 215 (336)
+.|++.+...+...+++.|.+|++++++..++++....+|.+++|.+++.+ +|++.|++.++..++..+
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999765 588899888877665544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=116.72 Aligned_cols=150 Identities=15% Similarity=0.074 Sum_probs=122.1
Q ss_pred hhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 72 ~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
..|.+. +++|++..+.+++.+.+.++..++.++.|+++||+|||+.+.....+.++..++....++.+.+.+..++.|+
T Consensus 227 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 306 (394)
T PRK03699 227 WVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGF 306 (394)
T ss_pred HHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445454 6789999999999999999999999999999999999999988887777777776677777777777888999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
+.+..++...++..|..| ++++...+.......+|..++|.+.+.+ ||+..+++.+++.+++.+...++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 307 FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888888888888776 4567888888888889999999888665 8888888877777766555555443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.4e-12 Score=113.87 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=123.3
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..|.+.++.|.+..+.+.+.++..++..++.++.+++.||+|+|+.+.++.++.++..+..++.++.+.+++.+++.|+.
T Consensus 227 ~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~ 306 (382)
T TIGR00902 227 FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Confidence 44556577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHH-HHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 216 (336)
.+..++....++.+. |+++|+++.++++ ...++|.++++.+++.+ ++ ..|++.+++++++++.
T Consensus 307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 999999999999998 9999999999976 56778888888888766 54 4566666666655444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=117.09 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=121.2
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..+.+.++.+.+. .++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++
T Consensus 238 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 315 (392)
T PRK12382 238 FVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAG 315 (392)
T ss_pred HHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444555566553 45666777888899999999999999999999999988888888888888888888889999999
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+.+ ||+..|++.+++.++..+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 316 CSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9888888888999999999999999999999999999998888665 899999998887777655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=121.01 Aligned_cols=154 Identities=15% Similarity=0.058 Sum_probs=112.5
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--c-hh-HHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--D-SS-FLFMGRL 146 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~~-~~~~~r~ 146 (336)
...|.+.++.|.+.....+......++..++.++.++++||+|||+.++.+.++.+++.++++... + .. ....+.+
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 371 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 371 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 345777788898877777777788888999999999999999999999999999888877765431 2 11 2223344
Q ss_pred HHHHHhhh-hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc----------cchhHHHHHHhHHHHHHHHH
Q 019729 147 LEGFGVGV-ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----------FVNWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 147 l~G~~~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~ 215 (336)
+.+++.+. ..+....+++|.+|+++|+++.|+.+....+|.++++.+.. ..+|++.|++.++.+++..+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (479)
T PRK10077 372 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 451 (479)
T ss_pred HHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHH
Confidence 44444443 33667899999999999999999998888888877744332 23677778777766665544
Q ss_pred H-hhcccCch
Q 019729 216 G-LFFIPESP 224 (336)
Q Consensus 216 ~-~~~~~e~~ 224 (336)
+ +++.||++
T Consensus 452 ~~~~~~~e~~ 461 (479)
T PRK10077 452 FMWKFVPETK 461 (479)
T ss_pred HHHhccccCC
Confidence 4 44567764
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=126.01 Aligned_cols=266 Identities=16% Similarity=0.201 Sum_probs=193.5
Q ss_pred HHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q 019729 51 CVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL 130 (336)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 130 (336)
.+.+.++..+..++..+++...+..+.+.++++.++.|++.+.+-++..+...+..++.-|..|-+.+-+|.++++++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 33444555566666668888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh--------------------c---------------------------c----hh-HHHHHHHHHHHHhhhhhhh
Q 019729 131 IISFS--------------------K---------------------------D----SS-FLFMGRLLEGFGVGVISYT 158 (336)
Q Consensus 131 ~~~~~--------------------~---------------------------~----~~-~~~~~r~l~G~~~g~~~~~ 158 (336)
++++- + . ++ .++++.++.|+|....++.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 88761 0 0 22 5666789999999999999
Q ss_pred HhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----------------------hhHHHHHHhHHHHHHHHH
Q 019729 159 VPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----------------------NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~w~~~~~~~~~~~~~~~~ 215 (336)
..+|+-|...+++-...+|+......+|.++|.+++++. .|+.-|++++.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888543 277778888888888888
Q ss_pred HhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhh--hhchhhhhhHHHHhcccchHHHHHHHHHHHH
Q 019729 216 GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVA--SSSRRTAIRFAELKRKRYWFPLMIGIGLLVL 293 (336)
Q Consensus 216 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (336)
.++++|...+.- .+. ...+..+..+.+++ ..+.+.. +.-++-+...+++++|+ +++..++...
T Consensus 338 p~f~fPk~lp~~---~~~-~~~~~~~~~k~~~~-------~~~~~~~~~~~ikdfp~s~~~ll~N~----if~~~~l~~~ 402 (735)
T KOG3626|consen 338 PLFFFPKELPKS---QKR-KRARDLHVLKTESG-------GAKSDKTFGKKIKDFPKSIKRLLSNP----IFMLVVLASV 402 (735)
T ss_pred HHHhCcccCccc---ccc-chhhhhcccccccc-------cccCCcchhhhHHHHHHHHHHHhcCc----hHHHHHHHHH
Confidence 888888654311 000 00000000000000 0000000 01112234555666654 4555566666
Q ss_pred HHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHHhh
Q 019729 294 QQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEALN 331 (336)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~g 331 (336)
.+...+.+...|+|-|++.. |.++..+..+++..++.+
T Consensus 403 ~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~ 441 (735)
T KOG3626|consen 403 IESLAITGYITFLPKYLETQFGISASLANILTGSIGVPA 441 (735)
T ss_pred HHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh
Confidence 67777888999999999655 999999999887666543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=117.33 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhc
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~ 166 (336)
.+.+.++..++..++.++.|+++||+|||+.+..+..+.+++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 45666777788889999999999999999999999888888877777778888888899999999999999999999999
Q ss_pred cCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 167 APQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
.|+++|++..++.+....+|..+||.+++.+ +|+..|++.+++.++..+..+
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765 899999998888777665544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-12 Score=116.03 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=138.6
Q ss_pred HHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHH
Q 019729 53 LVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWL 130 (336)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~ 130 (336)
+++....+.++++. ..........+++|++..+...+..+..+.+.+|++++|++.||+|.| ++++++++++.+..+
T Consensus 286 fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 286 FLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 33333334454432 223333334568999999999999999999999999999999999999 898888888866555
Q ss_pred HHHh--------hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----
Q 019729 131 IISF--------SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (336)
Q Consensus 131 ~~~~--------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----- 197 (336)
...+ .++.+.+.+.-++.|+..|..++...++.+|+.|+++.+...|++....-..+++||.+.+.+
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555 567788999999999999999999999999999999999999999999999999999998776
Q ss_pred hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 198 NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
+-|+.++...++.+++++++++++..
T Consensus 445 ~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccch
Confidence 47788888888888888777777653
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-12 Score=118.65 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=118.6
Q ss_pred ccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hc------
Q 019729 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SK------ 136 (336)
Q Consensus 68 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------ 136 (336)
......|.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++.+++.++.++ .+
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 3444567778889999988899999999999999999999999999999999988888777766652 11
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTL 212 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~ 212 (336)
+...+....++.+.......+....++.|.+|+++|+++.++.+....+|.+++|.+.+.+ +|++.|++.++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL 461 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence 2222222333333333334466677889999999999999999999999999999887654 788888888877777
Q ss_pred HHHHh-hcccCch
Q 019729 213 LIPGL-FFIPESP 224 (336)
Q Consensus 213 ~~~~~-~~~~e~~ 224 (336)
..+.. ++.||++
T Consensus 462 ~~i~~~~~~~~~~ 474 (481)
T TIGR00879 462 GLIFVYFFLPETK 474 (481)
T ss_pred HHHHHheecccCC
Confidence 65554 4567653
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=116.49 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=125.2
Q ss_pred hhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 72 TQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 72 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
..|.+.++ +|.+..+.+++.++..++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+..+++.++.|+
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 324 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGY 324 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 44555555 89999999999999999999999999999999888888888888888888888888888777888899999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH-HHHHHHhhcccCch
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC-TLLIPGLFFIPESP 224 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~-~~~~~~~~~~~e~~ 224 (336)
+.+...+...+++.|..|++.|+++.++++....+|..+++.+.+.+ |++..+++.+.+. +++.+....+++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888888889999999999999999999988888888888888666 6666666555444 44455556667654
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-11 Score=110.23 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=111.5
Q ss_pred HhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHh
Q 019729 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW-LIISFSKDSSFLFMGRLLEGFGV 152 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~G~~~ 152 (336)
+.+.+++|.+..+.+++.++..++..+++++.|+++||+|||+... +..+..++. ++....++.+.++++.++.|++.
T Consensus 230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~ 308 (390)
T PRK03545 230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI 308 (390)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 4456668999999999999999999999999999999999887544 444444443 33345667777888888999988
Q ss_pred hhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
+...+.....+.+..| ++|+++.++++....+|..+||.+++.+ |++..+++.+++.+++++...
T Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 7777777788888876 6889999988887787777777777654 899999998888777655543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=115.75 Aligned_cols=122 Identities=19% Similarity=0.300 Sum_probs=102.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHHhhcchhHHHHHHHHHHHHhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IISFSKDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~ 154 (336)
+.+++|.+..+.+++.+...++..++.++.|++.||+|||+.+.++.++.++..+ .....++.+.+.+..++.|+..+.
T Consensus 265 ~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (405)
T TIGR00891 265 LKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG 344 (405)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHcc
Confidence 4567899999999999999999999999999999999999999888776543333 333445566666666777877777
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
..+..+.++.|.+|+++|+++.|+.+....+|..++|.+.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999988776
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=114.76 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=104.9
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
...|.+.+++|.+..+.+++.++..++..++.++.|+++||+|||+.+....+......++....++...+++..++.|+
T Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 350 (398)
T TIGR00895 271 NWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350 (398)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999955444443333333333335666777788899999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
+.+...+...+++.|.+|+++|+++.|+......+|..++|.+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999999999999999999998765
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=113.67 Aligned_cols=147 Identities=13% Similarity=0.133 Sum_probs=98.8
Q ss_pred hhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHH-HHHHHHHHHHHHHHHh--hcchhHHHHHH
Q 019729 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIISF--SKDSSFLFMGR 145 (336)
Q Consensus 72 ~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~~r 145 (336)
..|.+. ++.|++..+.+++..++.++..++.++.|+++||+ |||+.. .+...+..++.+...+ ..+....+++.
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 354 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM 354 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 455554 45789988999999999999999999999999999 555432 2222333333332222 23444444445
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHH-HHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIML-AYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
++.|.+..........++.|.+|++.|+++.|+.+....+|..+ +|.+.+.+ ||+..|++.++.++++++...
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 55555443333334456789999999999999998877777554 67766544 899999888877777655443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=111.87 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=117.9
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..|.+.++.|.+.++.+++.++..++..+++++.|++.||+|+|+++..+.++.+++.+... + ........++.|++
T Consensus 222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~ 298 (381)
T PRK03633 222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAA 298 (381)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHH
Confidence 45667777899999999999999999999999999999999999999888888777665443 2 23344567778887
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
.+...|...+++.|..|+++++...+.++....+|.+++|.+++.+ +|++.|++.+.+.++..+..+..
T Consensus 299 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 299 GFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 7778899999999999988888888888888899999999888766 78889988887777665555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-11 Score=114.24 Aligned_cols=164 Identities=14% Similarity=0.078 Sum_probs=116.7
Q ss_pred hhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHHHHHH-HHHHHH
Q 019729 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAAVPNI-IGWLII 132 (336)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~ 132 (336)
++..|+.........+.+.+++|++.++.+.+.+...+...+-.+ +|.++||++ ||+.++++.++.+ ++....
T Consensus 35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l 113 (468)
T TIGR00788 35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL 113 (468)
T ss_pred HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 344555523334455667788999999999999999999988665 999999998 7777777776663 443333
Q ss_pred HhhcchhHHH-HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHH---HHHHHHHHHHHHHhhcc----chhHHHHH
Q 019729 133 SFSKDSSFLF-MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVN---QLSVTIGIMLAYLLGLF----VNWRVLAV 204 (336)
Q Consensus 133 ~~~~~~~~~~-~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~g~~~~~~~~~~----~~w~~~~~ 204 (336)
+..++..... +..++.+++.+....+.-+++.|..+ +++....+.. .....+|.++++.+++. .+|+..|+
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~ 192 (468)
T TIGR00788 114 PGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFL 192 (468)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 4334544444 47889999999999999999999998 5555443333 33334666666666654 48999999
Q ss_pred HhHHHHHHHHHHhhcccCch
Q 019729 205 LGVLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 205 ~~~~~~~~~~~~~~~~~e~~ 224 (336)
+.+++.++..+..++++|++
T Consensus 193 ~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 193 ITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 98887777766667778853
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=120.35 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=105.8
Q ss_pred hhhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHH
Q 019729 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLL 147 (336)
Q Consensus 71 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l 147 (336)
...|.+. +++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..++.+..... .+.+.+.+..++
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFF 375 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3455555 5899999999999999999999999999999999999999888877766665544433 233334444455
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHH
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~ 208 (336)
.++...+..+..+.++.|.+|+++|++.+++.+....+|..++|.+++.+ ||+..+.+.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 376 QQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSF 440 (496)
T ss_pred HHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHH
Confidence 44444445567778999999999999999999888899999998888655 77776655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=117.80 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=102.7
Q ss_pred hhHhHhhhccCCchhHHH------------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc--
Q 019729 72 TQAEIISDLKLTISEFSI------------FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-- 137 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-- 137 (336)
..|.+.++.|.+..+.+. ...+..++..++.++.++++||+|||++++++..+.+++.++.++..+
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566777776542211 233445566778899999999999999998888877777665554321
Q ss_pred --hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--------------hhHH
Q 019729 138 --SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRV 201 (336)
Q Consensus 138 --~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~ 201 (336)
...+...-+...++..+..+..+.+.+|.+|++.|+++.++.+....+|.+++|.+.+.+ ++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 111111111222222334566778889999999999999999999999999998876543 2345
Q ss_pred HHHHhHHHHHHHHHHhhcccCchh
Q 019729 202 LAVLGVLPCTLLIPGLFFIPESPR 225 (336)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~e~~~ 225 (336)
.+++.+++.++..+..+++||++.
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccCCC
Confidence 666666666666555667899753
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=111.12 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=112.7
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHHHHh-----hcchhHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-IAAVPNIIGWLIISF-----SKDSSFLFMG 144 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~~ 144 (336)
...|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.+.. .++.+.+++.
T Consensus 243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR00897 243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALII 322 (402)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Confidence 3556677889999999999999999999999999999999999988764 333333333333222 2356666778
Q ss_pred HHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 145 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
.++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+ ||+..+++.+++.++..+...|+
T Consensus 323 ~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 323 AIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8888988877654 4456677655 6899999999999999999999888655 88899998888877766655554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-11 Score=108.63 Aligned_cols=152 Identities=18% Similarity=0.123 Sum_probs=116.5
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRLLEG 149 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G 149 (336)
...|.+.+++|.+..+.+.+.+++.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+ .-++.|
T Consensus 226 ~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g 303 (393)
T PRK09705 226 AWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCG 303 (393)
T ss_pred HHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHH
Confidence 345556567899999999999999999999999999999999999999988877777766554333 22222 234668
Q ss_pred HHhhhhhhhHhHHHHhccC-CCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHH-HhhcccC
Q 019729 150 FGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~-~~~~~~e 222 (336)
++.+...+.......+.++ +++|++..++.+....++..++|.+.+.+ +|+..+++.++..++..+ ...+.||
T Consensus 304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (393)
T PRK09705 304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA 383 (393)
T ss_pred HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888888877777777775 57899999999999999999999888766 477777777766666544 3556677
Q ss_pred ch
Q 019729 223 SP 224 (336)
Q Consensus 223 ~~ 224 (336)
++
T Consensus 384 ~~ 385 (393)
T PRK09705 384 RF 385 (393)
T ss_pred cc
Confidence 64
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=111.96 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=95.7
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF- 150 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~- 150 (336)
..|.+.++.|.+..+.+.+.++..++..++.++.|++.||+|||+.+..+.++.++..+.....++.....+.-++.|+
T Consensus 253 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (426)
T PRK12307 253 LLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLM 332 (426)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4566667789998889999999999999999999999999999999988887776665554433322222222233333
Q ss_pred -HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 151 -GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 151 -~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+..+..+..+.++.|.+|+++|+++.|+......+|..++|.+.+.+
T Consensus 333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 333 ATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 22233456678889999999999999999988899999999988766
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=113.92 Aligned_cols=135 Identities=16% Similarity=0.111 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHhhhhhhhHhHHHHhcc
Q 019729 90 FGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS--SFLFMGRLLEGFGVGVISYTVPVYIAEIA 167 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~g~~~~~~~~~~~~~~ 167 (336)
...+..+....+.++.+++.||+|||+.+.++.++.+++.++..+.++. +..++..++.+++.+..++....+.+|.+
T Consensus 360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 439 (505)
T TIGR00898 360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345566778889999999999999999999999988888887776644 44555566777777888889999999999
Q ss_pred CCCcchhHHhHHHHHHHHHHHHHHHhhccc--hhHHHHHHhHHHHHHHHHHhhcccCch
Q 019729 168 PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 168 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e~~ 224 (336)
|++.|+.+.|+.+....+|.+++|.+.+.. ++...+++.++..++..+..+++||+.
T Consensus 440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988722 455677777777777777777889874
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-12 Score=109.22 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcch
Q 019729 94 ANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRG 173 (336)
Q Consensus 94 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 173 (336)
..+...-|.++.+++.||+|||++|.++.++.+++.++...+.+.....+.-+..-++..+.+.+.+.|..|.+|++.|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34566789999999999999999999999999999998887765444444444445556677788899999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHhhccc--hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 174 SLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 174 ~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
++.|.......+|+++.|+++-.. +-..+..+.+.+.+++.++..++|-
T Consensus 470 tgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999998333 2234445555666666666667763
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=107.91 Aligned_cols=174 Identities=21% Similarity=0.186 Sum_probs=143.2
Q ss_pred HHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 019729 49 VFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (336)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (336)
-.+.+++.-..+.+|.+. ........-..++|++..+...+..+..+.+.+|++++|++.||+|.|+++..+.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence 344444555556666543 2222222234589999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHH
Q 019729 129 WLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLA 203 (336)
Q Consensus 129 ~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~ 203 (336)
++..-+......+.++..+.|.+.|..++...+|.++..|+++-+...|+++.....++++||.+.+.+ +-|..+
T Consensus 332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~ 411 (438)
T COG2270 332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGV 411 (438)
T ss_pred HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHH
Confidence 888777776677788889999999999999999999999999999999999999999999999988766 567777
Q ss_pred HHhHHHHHHHHHHhhcccCc
Q 019729 204 VLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~e~ 223 (336)
....++.+++++.++++|+.
T Consensus 412 ~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 412 LSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHhhHhhEEeecCC
Confidence 77777777777777777764
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=108.09 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=112.0
Q ss_pred hhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q 019729 72 TQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD-SSFLFMGRLLEG 149 (336)
Q Consensus 72 ~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G 149 (336)
..|.+.++ +|.+..+.+++.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..++.|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 312 (365)
T TIGR00900 233 LFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIG 312 (365)
T ss_pred HhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 44555554 8999999999999999999999999999999999999999888888888887777774 778888899999
Q ss_pred HHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
++.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 313 VGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=105.00 Aligned_cols=142 Identities=15% Similarity=0.118 Sum_probs=115.2
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~ 151 (336)
..|.+.++.|.+..+.+.+.++..++..+..++.|++.||+|+|+.+.++.++.+++.++.+..++.+.+++..++.|++
T Consensus 227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 306 (382)
T PRK11128 227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT 306 (382)
T ss_pred HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445577899998999999999999999999999999999999999999999988888888888989888899999999
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHH-HHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 215 (336)
.+...+....++.+. +++++++..+..+ ....+|..+||.+++.+ ++ ..++..+++++++++
T Consensus 307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 998889988998887 5566788888875 55667777888877666 55 455555555554433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-11 Score=108.79 Aligned_cols=151 Identities=12% Similarity=-0.012 Sum_probs=97.8
Q ss_pred hhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h--hcchhHHHHHHH
Q 019729 72 TQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--SKDSSFLFMGRL 146 (336)
Q Consensus 72 ~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~r~ 146 (336)
..|. +.+++|.+..+.+...++..++..+++++.|+++||+|||+.+.++.++.++..+... . .++....+..-.
T Consensus 265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (432)
T PRK10406 265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVM 344 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3444 4566899988888888888888899999999999999999988776655433332221 1 122222222222
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHH-HHHHHHHHhhccc---h-hHHHHHHhHHHHHHHHHHhhccc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT-IGIMLAYLLGLFV---N-WRVLAVLGVLPCTLLIPGLFFIP 221 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~~---~-w~~~~~~~~~~~~~~~~~~~~~~ 221 (336)
+.+++.+...+....+++|++|++.|+++.|+.+.... +++...|.+...+ + |...+++.++..++.++..++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 345 CALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 23334444455677889999999999999999765444 3333466655444 3 55566666666666655555544
Q ss_pred C
Q 019729 222 E 222 (336)
Q Consensus 222 e 222 (336)
+
T Consensus 425 ~ 425 (432)
T PRK10406 425 R 425 (432)
T ss_pred h
Confidence 3
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-11 Score=107.65 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=113.3
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHh
Q 019729 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (336)
Q Consensus 81 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 160 (336)
+.+....+.+.++..+...++.+..|++.||+|||+.+.++.++.++...+....++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778889999999999999999999999999999999988888888777888888888899999998877777777
Q ss_pred HHHHhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH
Q 019729 161 VYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 161 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 215 (336)
.++.+..+++.+++..+. ++....+|.++++.+++.+ ||+..|.+.+++.++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 888888998888887766 6778888888888777655 888898887777665544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-11 Score=106.86 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=124.6
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
|+...+.+++.++....|.+. ...+...+.++.|++.+++.+.+....+...+..+++.++.||+|||+.++.+..+.
T Consensus 268 R~~~~i~~~v~~~qq~sGi~a--i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINA--IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLM 345 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcce--eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 333445555555555554433 344455678888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---chh------HHHHHHHHHHHHhh-hhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHH----H
Q 019729 126 IIGWLIISFSK---DSS------FLFMGRLLEGFGVG-VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA----Y 191 (336)
Q Consensus 126 ~~~~~~~~~~~---~~~------~~~~~r~l~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~----~ 191 (336)
.+..+++.... +.. ..+++.++..++.+ +..|+.+-+.+|++|++.|..+.++......+..++- |
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp 425 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFP 425 (485)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776532 111 12334444444333 4578889999999999999999998877777665544 3
Q ss_pred HhhccchhHHHHHHhHHHHHHH-HHHhhcccCch
Q 019729 192 LLGLFVNWRVLAVLGVLPCTLL-IPGLFFIPESP 224 (336)
Q Consensus 192 ~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~e~~ 224 (336)
.+...+|- +.|++..+++++. +..+..+|||+
T Consensus 426 ~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 426 PLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 34444454 5555555555555 44666799995
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=109.12 Aligned_cols=151 Identities=12% Similarity=0.151 Sum_probs=114.7
Q ss_pred hHhHhhhccCCchhHHHHH-HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-cchhHHHHHHHH
Q 019729 73 QAEIISDLKLTISEFSIFG-SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLL 147 (336)
Q Consensus 73 ~~~~~~~~g~s~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l 147 (336)
.|.+.+++|++..+.+++. ....++..++.+++|+++||+|+|+.+.++.++.+++.+.. +.. ++...+.+.-++
T Consensus 246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3445667899999999987 46668999999999999999999998877666555544322 232 344444555666
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
..++.|...+...++..+..+++.+++..++.+....+|..+++.+++.+ ||+..|.+.+++++++++...+++++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666666677788899999999999999999998899988776666554 89999999888888887766665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-11 Score=110.62 Aligned_cols=151 Identities=15% Similarity=0.074 Sum_probs=107.4
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hchh-HHHHHHHHHHHHHHHHHHhhcc------hhH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRK-GSLMIAAVPNIIGWLIISFSKD------SSF 140 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~ 140 (336)
....+.+.+|++...+|.+.++..+...+..|+.|+++|| +||| +.++.+.+..+++.++....++ ...
T Consensus 32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3445778899999999999999999999999999999999 7774 5555676777777665555543 345
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHhcc-CCCcchhHHhHHHHHHHHHHHHHHHhh----cc-------chhHHHHHHhHH
Q 019729 141 LFMGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLG----LF-------VNWRVLAVLGVL 208 (336)
Q Consensus 141 ~~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~----~~-------~~w~~~~~~~~~ 208 (336)
+++..++.+.+.........++.+|+. ++++|.+..++...+..+|..+++.+. .. .+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 555666667766677777788999988 558899888887776666666654432 21 267777777666
Q ss_pred HHHHHHH-HhhcccC
Q 019729 209 PCTLLIP-GLFFIPE 222 (336)
Q Consensus 209 ~~~~~~~-~~~~~~e 222 (336)
++++..+ ..+..+|
T Consensus 192 i~~v~~~~~~~~~~e 206 (444)
T PRK09669 192 LGVVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHHHhCCeEE
Confidence 6555543 3334454
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=109.93 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=100.0
Q ss_pred hhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHH-HHHHHHHHHHHHHHH--hhcchhHHHHHH
Q 019729 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSL-MIAAVPNIIGWLIIS--FSKDSSFLFMGR 145 (336)
Q Consensus 72 ~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~--~~~~~~~~~~~r 145 (336)
..|.+. +++|++..+.+...++..++..++.++.|+++||+ ++|+.. ....+...+...... ...+.....+..
T Consensus 265 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (434)
T PRK11663 265 WGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACF 344 (434)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 445454 67899999999999999999999999999999999 333332 222111111111111 122333333344
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
+..|++...........+.|.+|+++|+++.|+.+....+|..++|.+.+.+ ||+..|++.++++++..+..+
T Consensus 345 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 345 FTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 4455543333334456778999999999999999999999999998887665 899999888887777655443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=111.96 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=108.0
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchh-------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
+.+++|++..+.+.+.++..++..++.+++|+++||+||| ..+.+..++.+++.++....++.+..++.-++.
T Consensus 279 l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~ 358 (476)
T PLN00028 279 FYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILF 358 (476)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999876 233333333344444445555655555556667
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc---chhHHHHHHhHHHHHHHHHHhhccc
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---VNWRVLAVLGVLPCTLLIPGLFFIP 221 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~ 221 (336)
+++.+...+...+++.+..| ++|+...|+.+.+..+|+++++.+... .+|+..|++.+++.+++.++.++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 359 SIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 77666666666667777654 789999999998888999888877642 2699999988888888777666665
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-10 Score=102.11 Aligned_cols=143 Identities=11% Similarity=0.069 Sum_probs=107.6
Q ss_pred HhHhhhccCCchhHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh------hcchhHHHHHHH
Q 019729 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------SKDSSFLFMGRL 146 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~r~ 146 (336)
+.+.+|.|+++++.+++..+.. ....++.++.|++.||+|+|+.+.++..+.++..+.... .++...+.....
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 4455668999999999888776 466778999999999999999998877665333332221 123333444555
Q ss_pred HHHHHhhhhhhhHhHHHHhccCC-CcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~ 216 (336)
+.+++.|...+...+.+.+..++ +.+++..++.+....+|..++|.+++.+ ||+..|++.+++.++.++.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 66777777878888887788776 8899999999999999999999998765 7888888877776665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=96.46 Aligned_cols=156 Identities=18% Similarity=0.235 Sum_probs=119.5
Q ss_pred cccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-------cchh
Q 019729 67 GYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-------KDSS 139 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (336)
..++...|++++.+|+|.++...+.++..+|..+| ++.|.+.|++|.+.++.+|.+...++..+...+ .+++
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 44556678899999999999999999999999875 889999999999999999999998888776653 3567
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hh-HHHHHHhHHHHHHHHH
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NW-RVLAVLGVLPCTLLIP 215 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w-~~~~~~~~~~~~~~~~ 215 (336)
.+.+..++.|.+.+...+.......+.|| ++||++.|+.-...++++.+-..+...+ +- ...+.....+.+++++
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 77777888888877777777777778898 6899999999999999887766655443 22 2333334444555555
Q ss_pred HhhcccCch
Q 019729 216 GLFFIPESP 224 (336)
Q Consensus 216 ~~~~~~e~~ 224 (336)
..++++..|
T Consensus 177 ~~~~vr~~~ 185 (250)
T PF06813_consen 177 AMFFVRPVP 185 (250)
T ss_pred HhhheeccC
Confidence 656665443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=103.27 Aligned_cols=174 Identities=15% Similarity=0.194 Sum_probs=133.8
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhh----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHH
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISD----LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSL 118 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l 118 (336)
+++..+.+..+=..=.|.++-.+. +..-++..+ +|++++++.-+.+++..---+..+++||++||+ |+|+++
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmra---iL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRA---ILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 445555554444444444432222 222234444 449999988888888887788899999999996 999999
Q ss_pred HHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCc--chhHHhHHHHHHHHHHHHHHHhh
Q 019729 119 MIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
.++.++++++-++.+.+. +...++++-.+.++|.|..=+-..+++.|.+|+++ |-...+++.++.++|++++|.+.
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 999999999999999884 78889999999999999999999999999998643 45577778888889999888888
Q ss_pred ccc----hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 195 LFV----NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 195 ~~~----~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
+++ ||...|..+++-..++++..+..
T Consensus 176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 766 89999988887777766655443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-12 Score=106.99 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHH
Q 019729 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPN 125 (336)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 125 (336)
++.++++.+|+..|..+++.........+.+.+.+++.++..++.+++..-..+-++++|++.|| +|-|..-++-+...
T Consensus 41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv 120 (459)
T KOG4686|consen 41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV 120 (459)
T ss_pred hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence 44556666666667777888777777888888889988899999999999999999999999997 68777665555555
Q ss_pred HHHHHHHHh---hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHh
Q 019729 126 IIGWLIISF---SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (336)
Q Consensus 126 ~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 193 (336)
.++-++++. .+.+|++.++|++.|+|.-..-.+...|+..||..|+-+.++|+......+|+.+--.+
T Consensus 121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~l 191 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLL 191 (459)
T ss_pred HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeee
Confidence 566665553 57899999999999999877778889999999999999999999988888887654333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-10 Score=96.25 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=104.8
Q ss_pred chhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 019729 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (336)
Q Consensus 70 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 149 (336)
+|..=.+.+++|+++.+++.+....+....+..++.|.++||+|||+.-++.+++++++++ +-..++++.++++|++.|
T Consensus 54 GpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 54 GPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred cchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHH
Confidence 3443345578999999999999999999999999999999999999999999999999986 455688999999999999
Q ss_pred HHhhhhhhhHhHHH-HhccCCCcc----hhHHhHHH-HHHHHHHHHHHHhhcc----c--hhHHHHHHhHHHHHHHHHHh
Q 019729 150 FGVGVISYTVPVYI-AEIAPQNMR----GSLGSVNQ-LSVTIGIMLAYLLGLF----V--NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 150 ~~~g~~~~~~~~~~-~~~~~~~~r----~~~~~~~~-~~~~~g~~~~~~~~~~----~--~w~~~~~~~~~~~~~~~~~~ 217 (336)
++....+.+--+++ .|.-..+.+ +...+... ...++-.+++..++.. . |...+|.....+.+++.++.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 99999888876554 454222211 11121111 1122222333333322 2 33567877777766665544
Q ss_pred h-cccCc
Q 019729 218 F-FIPES 223 (336)
Q Consensus 218 ~-~~~e~ 223 (336)
. .-+|.
T Consensus 213 ~~~W~EN 219 (354)
T PF05631_consen 213 LKTWPEN 219 (354)
T ss_pred Hhccccc
Confidence 3 33454
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-10 Score=107.12 Aligned_cols=126 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred hhHhHhh-hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHH
Q 019729 72 TQAEIIS-DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLL 147 (336)
Q Consensus 72 ~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l 147 (336)
..|.+.+ .+|.++.+.+++.....++..++.++.|++.||+|||+++..+..+.+++.++..+. ++.+.+.+..++
T Consensus 283 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (471)
T PRK10504 283 MTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFL 362 (471)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 4555544 589999999999998889999999999999999999999999988887776666553 233334456777
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
.|++.+..++....++.+..|++.|+.+.++.+....+|..+|+.+++.+
T Consensus 363 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 363 QGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999998887654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-11 Score=110.06 Aligned_cols=150 Identities=11% Similarity=0.118 Sum_probs=104.5
Q ss_pred HhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh----hhch-hHHHHHHHHHHHHHHHHHHhhcc------hhHHH
Q 019729 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGR-KGSLMIAAVPNIIGWLIISFSKD------SSFLF 142 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~ 142 (336)
..+.+.+|++...+|.+..+.-+...+..|+.|+++| |+|| |+.++++....+++.+++...++ +..++
T Consensus 31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~ 110 (473)
T PRK10429 31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC 110 (473)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3456678999999999999999999999999999999 5698 55666677777777655544332 23445
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhcc-CCCcchhHHhHHHHHHHHHHHHHHHhhc----c-------chhHHHHHHhHHHH
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIA-PQNMRGSLGSVNQLSVTIGIMLAYLLGL----F-------VNWRVLAVLGVLPC 210 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~-------~~w~~~~~~~~~~~ 210 (336)
+..++.+++.........++..|.. ++++|.+..++-..+..+|.++.+.+.. . .+|+...++.+++.
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 5566777788788888899999999 5899999888866666665444433221 1 14666666655555
Q ss_pred HHHHH-HhhcccCc
Q 019729 211 TLLIP-GLFFIPES 223 (336)
Q Consensus 211 ~~~~~-~~~~~~e~ 223 (336)
++..+ ..+..+|.
T Consensus 191 ~~~~~~~~~~~~e~ 204 (473)
T PRK10429 191 IVSTIITLRNVHEV 204 (473)
T ss_pred HHHHHHHHcCceec
Confidence 54433 33445654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=107.50 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=123.2
Q ss_pred hhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 72 ~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
.+|.+. +++|.+....|++.++..+|.++|.++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|+
T Consensus 240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~ 319 (524)
T PF05977_consen 240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGA 319 (524)
T ss_pred hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 455554 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 215 (336)
+.....+...+.+.+..|++.||+.++++++....+..+|..+.+.+ |.+..+.+.++..++..+
T Consensus 320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 99999889999999999999999999998877777666666666554 777777776665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=102.84 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=123.8
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHH
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMI 120 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~ 120 (336)
.++..|.+.+.-.+ .++.+..+.--.|. +.|..|+|..++++..+.+-.+++.|.+++|+++||. |||.+..+
T Consensus 250 ~Nk~iW~la~a~vf----vYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~ 325 (448)
T COG2271 250 KNKLIWLLALANVF----VYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL 325 (448)
T ss_pred cChHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence 34455555443333 33344333333332 5677899999999999999999999999999999996 77766554
Q ss_pred HH-HHHHHHHHHHHhhc--chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH-HHHHHHHhhcc
Q 019729 121 AA-VPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLF 196 (336)
Q Consensus 121 ~~-~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~ 196 (336)
.. ++..++.+..-.++ |+.+..++-+++|+..-+..-.......|..|++.-|++.|+.+.+..+ |...+....+.
T Consensus 326 i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~ 405 (448)
T COG2271 326 IFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY 405 (448)
T ss_pred HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence 44 33344444444454 4578888899999988888888888899999999999999999988888 77777665555
Q ss_pred c----hhHHHHHHhHHHHHHHHHHh
Q 019729 197 V----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 197 ~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
+ ||...|++..+.++++.+++
T Consensus 406 i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 406 IADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred eEecCCCcchHHHHHHHHHHHHHHH
Confidence 4 89988888777666665443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-10 Score=103.37 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=96.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhhhhhhhHhH
Q 019729 83 TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVISYTVPV 161 (336)
Q Consensus 83 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~~~~~~ 161 (336)
+....+++.++..++..++.+++++++||+|+|+++.++.++.+++.+...+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888899999999999999999999999999988888887776665 35566677788899999999999999
Q ss_pred HHHhccC-------CCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 162 YIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 162 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+++|..+ ++.+|...++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998875 55679999999999999988888877544
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=107.76 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=96.1
Q ss_pred hhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH---HHHHHHHhh--cchhHHHHHH
Q 019729 72 TQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLIISFS--KDSSFLFMGR 145 (336)
Q Consensus 72 ~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~~--~~~~~~~~~r 145 (336)
..|.+. +..|.+..+.++..++..++..++.++.|+++||+|+++....+..+.. ++.+..... .+.+...+..
T Consensus 273 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T TIGR00712 273 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICM 352 (438)
T ss_pred hHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 344444 4579999999999999999999999999999999975432222322221 222222222 2333333344
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHH-HHHHHHhhccc----hhHHHHHHhHHHHHHHHH-Hhhc
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFF 219 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~ 219 (336)
++.|++..+..........|.+|+++|+++.|+.+....+| .+++|.+.+.+ ||...+++.....+++.+ .+++
T Consensus 353 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T TIGR00712 353 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 432 (438)
T ss_pred HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 45555432222233356789999999999999988776665 45677776544 788888877666655544 3444
Q ss_pred ccCc
Q 019729 220 IPES 223 (336)
Q Consensus 220 ~~e~ 223 (336)
.||.
T Consensus 433 ~~~~ 436 (438)
T TIGR00712 433 MIGE 436 (438)
T ss_pred Hhhc
Confidence 5553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-11 Score=105.52 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=92.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHH-HHH-HHHHHHHHHHHh--hcchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLM-IAA-VPNIIGWLIISF--SKDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~-~~~-~~~~~~~~~~~~--~~~~~~~~~~r~l~G~ 150 (336)
+.+++|.+..+.+++.+...++..++.++.|++.||.++ |+... ... ....++...... ..+....++..++.|+
T Consensus 243 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 322 (379)
T TIGR00881 243 LTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGF 322 (379)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999998643 33222 222 122222222222 2344455566777777
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHH
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVL 202 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~ 202 (336)
......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+ ||++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 323 LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 66666667778899999999999999999999999999998887665 56543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=108.34 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=140.9
Q ss_pred ccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 019729 66 CGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFLFM 143 (336)
Q Consensus 66 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (336)
.......+|.+.++.|.+..+++.+.++..+...++.++.|+++|+.. ++.+..+++++.+++.+.+.+.++++.++.
T Consensus 314 ~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~ 393 (509)
T KOG2504|consen 314 FNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIV 393 (509)
T ss_pred HHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344455678888899999999999999999999999999999999988 566777888888888899999999999999
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhh
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
.-.+.|++.|.........+.|..+.++-..+.|+.....+++..+||++++.+ +|...|+++++..+++.++++
T Consensus 394 ~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 394 FSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 588999999999888887777
Q ss_pred ccc
Q 019729 219 FIP 221 (336)
Q Consensus 219 ~~~ 221 (336)
..|
T Consensus 474 ~~~ 476 (509)
T KOG2504|consen 474 ILR 476 (509)
T ss_pred HhH
Confidence 766
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-11 Score=110.03 Aligned_cols=151 Identities=17% Similarity=0.237 Sum_probs=114.5
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh----hhchhHHHH-HHHHHHHHHHHHHHhh-c-------ch
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE----YIGRKGSLM-IAAVPNIIGWLIISFS-K-------DS 138 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~-~-------~~ 138 (336)
..+.+.+..|+++...+.+..+..+..++..|+.|.++| |+||||..+ ++....+++.+++... + ..
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345577788999999999999999999999999999999 899766555 6777777777777765 4 12
Q ss_pred hHHHHHHHHHHHHhhhhhhhHhHHHHhccC-CCcchhHHhHHHHHHHHHHHHHHHhhcc----c-------hhHHHHHHh
Q 019729 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLG 206 (336)
Q Consensus 139 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~-------~w~~~~~~~ 206 (336)
..+.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+... + +|++..++.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 335666777788888888889999999998 5789999998888777777644443322 1 588888877
Q ss_pred HHHHHHHHH-HhhcccC
Q 019729 207 VLPCTLLIP-GLFFIPE 222 (336)
Q Consensus 207 ~~~~~~~~~-~~~~~~e 222 (336)
+++.++..+ ..+..+|
T Consensus 184 ~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHhhhhhheeee
Confidence 777666644 4455666
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-10 Score=102.18 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=90.8
Q ss_pred hhhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHH---hhcchhHHHHHH
Q 019729 71 PTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWL-IIS---FSKDSSFLFMGR 145 (336)
Q Consensus 71 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~r 145 (336)
...|.+. +.+|++..+.+++.....++..++.++.|+++||+|||+++..+..+..+..+ ... ..++...+.+..
T Consensus 259 ~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (434)
T PRK15075 259 VYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE 338 (434)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3455554 44899988889998899999999999999999999999988876554433221 111 123333444445
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHH-HHHHHHHHHHHHhhccc
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQ-LSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~ 197 (336)
++.|++.+...+....++.|.+|++.|+.+.++.+ .+..+++.++|.+.+.+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 66677777777777789999999999999999854 44445566677776543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=100.87 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=93.0
Q ss_pred ccccchhhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH--HHHH-HHHHhh----cc
Q 019729 66 CGYSSPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN--IIGW-LIISFS----KD 137 (336)
Q Consensus 66 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~~~~-~~~~~~----~~ 137 (336)
.+...|..+... ++.|++.++.|.+.++..+..++.+++.|.++||+|.||-++....+. ..+. +...+. .|
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n 102 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN 102 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544 458999999999999999999999999999999999776554433222 1122 221222 22
Q ss_pred h-hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHH
Q 019729 138 S-SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 138 ~-~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 213 (336)
. ...+++.+..|+......++.-+++.++. ++.+.-.|-.-.++++|.+++..+++.+ +.+..||++...+++.
T Consensus 103 ~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il 180 (412)
T PF01306_consen 103 FWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIIL 180 (412)
T ss_dssp -HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHH
Confidence 2 22233334445555555566666665554 3345555666677788888888777766 5667888877666655
Q ss_pred HHHhhcc
Q 019729 214 IPGLFFI 220 (336)
Q Consensus 214 ~~~~~~~ 220 (336)
.++.++.
T Consensus 181 ~lll~~~ 187 (412)
T PF01306_consen 181 LLLLLLL 187 (412)
T ss_dssp HHHHHSS
T ss_pred HHHHHHc
Confidence 5444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-09 Score=96.11 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=119.4
Q ss_pred ccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHH
Q 019729 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGRL 146 (336)
Q Consensus 68 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~ 146 (336)
.++..-|.+++..|++.+..+++.-++.++..+|..++|++.|| +.|+.+.....+.++..+...+.. +.+..++.-+
T Consensus 230 ~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~ 308 (394)
T COG2814 230 LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLF 308 (394)
T ss_pred hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34456677888999999999999999999999999999999999 999999988888777777666654 4555555666
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
+.|+..+.........+++ .-++.+..+.++....+++|..+|..+++.+ |+....++++++.++++++.+.
T Consensus 309 ~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 309 LWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 6777776666666666666 3358899999999888888888888888655 8889999998888887665543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-09 Score=94.33 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=124.2
Q ss_pred hhHhHhhh-ccCCchhHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 019729 72 TQAEIISD-LKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (336)
Q Consensus 72 ~~~~~~~~-~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 149 (336)
..|.+.+. .|++.+++. -+.-+..-.++...++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|
T Consensus 26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg 105 (412)
T PF01770_consen 26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG 105 (412)
T ss_pred chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 34445554 789888764 5666667788889999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------hhHHHHHHhHHHHHHHHHHhhcccCc
Q 019729 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPES 223 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~ 223 (336)
++.+ ...+..+|+-...|+++-.++.+....+..+|.+++..+++.+ +++...++......++++..+++|..
T Consensus 106 ~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~ 184 (412)
T PF01770_consen 106 LATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMP 184 (412)
T ss_pred HHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9884 4777788888888888888888888888878877777777554 56666667666666667777788876
Q ss_pred hhHH
Q 019729 224 PRWL 227 (336)
Q Consensus 224 ~~~~ 227 (336)
++-.
T Consensus 185 ~~S~ 188 (412)
T PF01770_consen 185 KRSL 188 (412)
T ss_pred Cccc
Confidence 6533
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-10 Score=100.79 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=100.4
Q ss_pred HhHhhhccCCchhHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-cchhHHHHHH---
Q 019729 74 AEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGR--- 145 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r--- 145 (336)
+.+.+++|+++++.+++.+... ++..++.+++|++.||+|+|+.+.++.++.++..+.. ++. ++.+.+++.-
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 313 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE 313 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 3466778999999999886654 5689999999999999999998887777666554333 343 3445444444
Q ss_pred -HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccchhHHHHHHhHHHHHHHHHHhhccc
Q 019729 146 -LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIP 221 (336)
Q Consensus 146 -~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 221 (336)
+..|++.+...+....++.+.+|.+.++...+....+..+++.++..+...+||+..|.+.++++++.+++.+..+
T Consensus 314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 314 NLCGGMGTAAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777788888888766655433333333333333444444556999999998888877766654433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-10 Score=115.93 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=116.4
Q ss_pred hHhhhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhh
Q 019729 75 EIISDLKLTIS-EFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVG 153 (336)
Q Consensus 75 ~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g 153 (336)
.+.+.+|.+.. ..+++.++..++.+++.+++|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+
T Consensus 258 ~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 258 YAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337 (1146)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35667899988 89999999999999999999999999999999999988888888888888888888888999999999
Q ss_pred hhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHH
Q 019729 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTL 212 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~ 212 (336)
+..+...+++.+..|++.|++++++.+....+|.++++.++..+ ++...+++.+.+.++
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888887777766544 344455554444333
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-10 Score=101.59 Aligned_cols=146 Identities=15% Similarity=0.056 Sum_probs=110.7
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHhhhhh
Q 019729 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMGRLLEGFGVGVIS 156 (336)
Q Consensus 78 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~g~~~ 156 (336)
++.+.+....+++.++..+.....+++.|.+.||+++|+.+..+..+.+++.+...+. ++.+.+++..++.|++.+...
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777888888888888888999999999999999999988888887777664 466667778899999998888
Q ss_pred hhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH-HhhcccCch
Q 019729 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPESP 224 (336)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 224 (336)
|....++.+..|++.|++..+..+ ...+|..+||.+++.+ +.+..|++.+....+..+ .....+|.|
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 888899999999999999988655 4557888888887665 566666665444443333 233344443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=97.20 Aligned_cols=144 Identities=16% Similarity=0.138 Sum_probs=118.4
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 019729 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (336)
Q Consensus 79 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 158 (336)
+-+.+....|.+.++..+.-.+...+.+++.+|+|.|+.++++..++++=.++++++++.+.+.+.+.+.|+..+.....
T Consensus 253 ~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva 332 (412)
T PF01306_consen 253 SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVA 332 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH-HhhcccC
Q 019729 159 VPVYIAEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP-GLFFIPE 222 (336)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~-~~~~~~e 222 (336)
...|+++.+|+|..++...+ .+....+|.++.+.+++.+ |.+..|++.+.+.++..+ ..+.+++
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 99999999999988888877 4678888888888887766 888888877776665544 4444544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=96.53 Aligned_cols=153 Identities=20% Similarity=0.324 Sum_probs=118.9
Q ss_pred hhhHhHhhhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-cchhHHHHH----
Q 019729 71 PTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-KDSSFLFMG---- 144 (336)
Q Consensus 71 ~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 144 (336)
...+.+.++.| .+....+.+.++..++-++.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+.
T Consensus 228 ~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~ 307 (400)
T PF03825_consen 228 TFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLG 307 (400)
T ss_pred HHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34455666777 777778888888888889999999999999999999999999999988888887 454443333
Q ss_pred HHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHH-HHHHHHHHHHHhhccc----------hhHHHHHHhHHHHHHH
Q 019729 145 RLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 145 r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~ 213 (336)
..+.|+..+..+.....|+.+..|++.|+++.++++. ..++|..+|..+++.+ .|...+.+.+.+.++.
T Consensus 308 q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~ 387 (400)
T PF03825_consen 308 QLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVI 387 (400)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999765 5788999988888766 3445555666655555
Q ss_pred HH-HhhcccCc
Q 019729 214 IP-GLFFIPES 223 (336)
Q Consensus 214 ~~-~~~~~~e~ 223 (336)
.+ .+++++|+
T Consensus 388 ~~~f~~~fk~~ 398 (400)
T PF03825_consen 388 LVLFVILFKPK 398 (400)
T ss_pred HHHHHhhccCC
Confidence 44 33445543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-09 Score=95.85 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=94.7
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~ 150 (336)
+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.+++... ++...++...++.|+
T Consensus 233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 312 (385)
T TIGR00710 233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI 312 (385)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999988887777776655543 233445556778899
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHH-HHHHHHHHhh
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT-IGIMLAYLLG 194 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~ 194 (336)
+.+...+.......|..| ++|+++.++.+.... .|.+.++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889999899999887 679999998776654 4666666655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-09 Score=98.66 Aligned_cols=143 Identities=14% Similarity=0.042 Sum_probs=105.9
Q ss_pred hHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHH-HHHHHHHHHHHHHHhhcc------hhHH
Q 019729 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLM-IAAVPNIIGWLIISFSKD------SSFL 141 (336)
Q Consensus 73 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~-~~~~~~~~~~~~~~~~~~------~~~~ 141 (336)
...+.+..|+++..+|.+..+.-+.-++.-|+.|.++|| +||||..+ ++.+..+++.+++...++ ...+
T Consensus 33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~ 112 (460)
T PRK11462 33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA 112 (460)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 334667789999999999999999999999999999996 69865554 566777777766654442 2345
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccC-CCcchhHHhHHHHHHHHHHHHHHHhhcc----c-------hhHHHHHHhHHH
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF----V-------NWRVLAVLGVLP 209 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~----~-------~w~~~~~~~~~~ 209 (336)
++.-++..++.........++.+|..+ +++|.+..++...+..+|..+++.+... . +|+....+.+++
T Consensus 113 ~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii 192 (460)
T PRK11462 113 AITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVV 192 (460)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence 556667788888888888899999997 7999999999888888877666554321 1 466666666665
Q ss_pred HHHHHH
Q 019729 210 CTLLIP 215 (336)
Q Consensus 210 ~~~~~~ 215 (336)
.+++.+
T Consensus 193 ~~i~~~ 198 (460)
T PRK11462 193 AFMMLA 198 (460)
T ss_pred HHHHHH
Confidence 555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=93.86 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=99.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhH
Q 019729 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTV 159 (336)
Q Consensus 80 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 159 (336)
+|+++++.+...+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++....++... ...-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999998888888777766655554332 345668899999999999
Q ss_pred hHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHH
Q 019729 160 PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVL 208 (336)
Q Consensus 160 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~ 208 (336)
.+...+..|+ +.+.+.++. ....+|.+++|.+.+.+ |.+..+++..+
T Consensus 252 ~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 252 FSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999998875 355666665 45668889898876655 56666664333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-09 Score=97.24 Aligned_cols=137 Identities=12% Similarity=0.177 Sum_probs=105.3
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----KDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~ 150 (336)
+.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+. .+.+.+++..++.|+
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF 321 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 456789999888988888888899999999999999999999998888777776666543 245566778888999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHH
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~ 213 (336)
+.+...+......... ++++|++..+.++....+|..+|+.+++.+ ++....+...+..++.
T Consensus 322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9888777766655444 458999999999999999999998888766 4444444444343333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-10 Score=102.82 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=96.7
Q ss_pred cchhhHhHhhhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 019729 69 SSPTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGS-LMIAAVPNIIGWLIISFSKDSSFLFMGR 145 (336)
Q Consensus 69 ~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r 145 (336)
+....|.+.+++ |.+..+.+.+.+...++..++.++.|+++||++||+. +....++.+++.++....++....+++-
T Consensus 261 ~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (412)
T TIGR02332 261 INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI 340 (412)
T ss_pred HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334566666664 6677888999999999999999999999999997774 3334434444333222222322222222
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHH
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPC 210 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~ 210 (336)
.+.+++.....+.......|.+|+++|+++.|+.+....+|.+++|.+.+.+ +|++.+++.++..
T Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 2333333333344455557889999999999999999999999999887654 5888887766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-09 Score=95.62 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=105.8
Q ss_pred hHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Q 019729 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGV 152 (336)
Q Consensus 73 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~ 152 (336)
.|.+.+++|++..+.+.+.+...++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~ 319 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF 319 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46677788999999999999999999999999999999965444344333334444455455667777778889999999
Q ss_pred hhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHH
Q 019729 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~ 213 (336)
+...+...+++.+..| +++++..+.......+|..+|+.+++.+ |++..++.++...++.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 9999989989999887 5566777777777778888888777665 7777777766554433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=100.57 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=105.1
Q ss_pred cchhhHhH-hhhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---cchhHHHH
Q 019729 69 SSPTQAEI-ISDLKLT-ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFM 143 (336)
Q Consensus 69 ~~~~~~~~-~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ 143 (336)
.....|.+ .+++|.+ ..+.+++.++..++..++.++.|++.||+|+|+.+.+......++.+...+. ++....+.
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLII 304 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34456655 7889999 7889999999999999999999999999999888777777776666655543 34566777
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHH
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (336)
.-++.|++.+...+....++.|.+|+++|+++.|+.+....+|..++|
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 305 ALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 888899999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=98.36 Aligned_cols=113 Identities=12% Similarity=0.203 Sum_probs=93.2
Q ss_pred hhHhHhhhccCCchhHHHHHHHHH-HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh-----------cchh
Q 019729 72 TQAEIISDLKLTISEFSIFGSLAN-VGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-----------KDSS 139 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~ 139 (336)
..|.+.+++|.+.++.+.+.++.. ++..++.+++|++.||+|||+.+.++.++.+++..+..+. ++.+
T Consensus 231 ~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 231 LTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 445555568999999988887665 6788999999999999999999988888887776655442 3456
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHH
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVT 184 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (336)
.+..+.++.+++.+...+...+++.|.+|+++||+..++.+...+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 677778899999999999999999999999999999999877654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-09 Score=96.81 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=110.7
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
..|.+.++.+.++.+.+++.++..++...+..+.+++.| |++.++.+..+.++.+++.++.+..++.+.+.+..++.|+
T Consensus 230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 309 (400)
T PRK11646 230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI 309 (400)
T ss_pred hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555665557778888888887777766666666665 5676777778888888888888888888777777888899
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---h-----hHHHHHHhHHHHHHHHHH
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---N-----WRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~-----w~~~~~~~~~~~~~~~~~ 216 (336)
+.+...+...+++.+..|+++|++..|+.+....+|..+||.+++.+ + ....++..++..++..+.
T Consensus 310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999988776 1 134445545555555443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=98.63 Aligned_cols=123 Identities=10% Similarity=0.181 Sum_probs=83.8
Q ss_pred HhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh----chhHHH-HHHHHHHHHHHHHHHhhc-----c--hhHH
Q 019729 74 AEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI----GRKGSL-MIAAVPNIIGWLIISFSK-----D--SSFL 141 (336)
Q Consensus 74 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~~~~~-----~--~~~~ 141 (336)
..+.+..|++..++|.+.++..+...+..++.|+++||. ||||.. .++.+...+..++....+ + ...+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA 112 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence 456777899999999999999999999999999999996 777755 555554544444332111 1 1223
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccCC-CcchhHHhHHHHH-----HHHHHHHHHHhhcc
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQLS-----VTIGIMLAYLLGLF 196 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-----~~~g~~~~~~~~~~ 196 (336)
+...++.+++.+...+...++..+..+. ++|....+.-..+ ..++..++|.++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445677888888887777777777654 6788776654433 33455566666543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=95.61 Aligned_cols=148 Identities=12% Similarity=0.090 Sum_probs=100.0
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---KGSLMI-AAVPNIIGWLIISFSKDSSFLFMGRL 146 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~ 146 (336)
..+|.+.++.|.+.. .+...++..+...++ .++++||..| |+.... ..++.+++....++..+....++.-.
T Consensus 213 ~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (368)
T TIGR00903 213 IWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIG 288 (368)
T ss_pred HHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 356666677787754 566655555555555 4677777654 343332 34444444444455555544455566
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--hhHHHHHHhHHHHHHHHHHhhcccC
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--NWRVLAVLGVLPCTLLIPGLFFIPE 222 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~e 222 (336)
+.|++....++...++.+|.+|++.|+++.|+.+....+|++++|.+.+.+ +-+..|.+.+++.+++.+..+.+++
T Consensus 289 l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~ 366 (368)
T TIGR00903 289 IAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLLPN 366 (368)
T ss_pred HHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777778888889999999999999999999999999998888777543 6666777777776666555444454
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-09 Score=95.14 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=94.9
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHhhh
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~ 154 (336)
++.+|.+....++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+.+ +.+.+++..++.|+|.+.
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 445676655555545555677888999999999999999999999988888877776644 456666778889999999
Q ss_pred hhhhHhHHHHhccCCC-------cchhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 155 ISYTVPVYIAEIAPQN-------MRGSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
..+...++.+|..|.+ ++|...++.+....+|..+++.+.+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988754 45888899999888888888777643
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.1e-09 Score=95.50 Aligned_cols=144 Identities=11% Similarity=0.183 Sum_probs=102.8
Q ss_pred hHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHH
Q 019729 73 QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-SKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 73 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G~~ 151 (336)
.|.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..++.+++
T Consensus 223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g 302 (382)
T PRK10091 223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAG 302 (382)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34466668999999999999999999999999999999999999999888887777765543 44555556666666666
Q ss_pred hhhhhhhHh-HHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhh
Q 019729 152 VGVISYTVP-VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 152 ~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
.+...+... ....+..+++.++.. ..+....+|..+||.+++.+ +|++.+.+.++.+++.+....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 303 LFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 554444433 344444444444443 34566778888888877654 688888887776666544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=111.75 Aligned_cols=134 Identities=12% Similarity=0.039 Sum_probs=109.1
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--------------------
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS-------------------- 135 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------- 135 (336)
+.+.+|.+....+++.++..++.+++.++.|+++|+.++++.+..+.++.+++.+.+++.
T Consensus 252 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 331 (1140)
T PRK06814 252 AKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSK 331 (1140)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcc
Confidence 455689999999999999999999999999999999887777666666665555544442
Q ss_pred cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHH
Q 019729 136 KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLP 209 (336)
Q Consensus 136 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~ 209 (336)
++.+.+++..++.|++.+...+...+++.+.+|++.||+++|..+....+|..+++.+.+.+ ++...+++.+++
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 56677778889999999999999999999999999999999999999999998888887655 445555544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=100.84 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=107.2
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--h--cchhHHHHHHH
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--S--KDSSFLFMGRL 146 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~--~~~~~~~~~r~ 146 (336)
..|.+ ++.+|.++.+.+++.....++..++.++.|++.||+|||+.+.++..+.+++.++..+ . .+++.+....+
T Consensus 277 ~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (485)
T TIGR00711 277 LLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQF 356 (485)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 34444 4558999999999999999999999999999999999999999998888888877663 2 34556667788
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+
T Consensus 357 l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 357 IRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888888889999999999999999999999998887665
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=99.71 Aligned_cols=149 Identities=15% Similarity=0.105 Sum_probs=100.7
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH--------HHHHHHH--HHHHHHHHh-hcchh
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSL--------MIAAVPN--IIGWLIISF-SKDSS 139 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~ 139 (336)
.+|.+ .+.+|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..+.... ..+..
T Consensus 283 ~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (465)
T TIGR00894 283 YLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY 362 (465)
T ss_pred HHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 44544 566899999999999999999999999999999998765321 1111111 111111222 22333
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-------hhHHHHHHhHHHHHH
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTL 212 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-------~w~~~~~~~~~~~~~ 212 (336)
..++.-.+.+.+.+...+.......|..| +.+|...++.+....+|++++|.+.+.+ +|+..|++.++..++
T Consensus 363 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i 441 (465)
T TIGR00894 363 LTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNIL 441 (465)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHH
Confidence 44444455555555555555555667776 5899999999999999999999888754 388888888877777
Q ss_pred HHHHhhccc
Q 019729 213 LIPGLFFIP 221 (336)
Q Consensus 213 ~~~~~~~~~ 221 (336)
..+...+++
T Consensus 442 ~~i~~~~~~ 450 (465)
T TIGR00894 442 CVIFYLIFG 450 (465)
T ss_pred HHHHeeeee
Confidence 766555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-09 Score=93.95 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=92.3
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 155 (336)
+.+++|.+..+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.+...+.++.+..+..-.+.+.+.+..
T Consensus 230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 309 (392)
T PRK10473 230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG 309 (392)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999888888877777665544444444444444443
Q ss_pred hhhHhHHHHhccCCCcc-hhHHhHHHHHHHHHHHHHHHhhccchhHHHHHHhHH
Q 019729 156 SYTVPVYIAEIAPQNMR-GSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVL 208 (336)
Q Consensus 156 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~w~~~~~~~~~ 208 (336)
.+. ....+..|.++| +.+.++...+..+|..+++.+.+.+++.......+.
T Consensus 310 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 310 FGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred hHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 333 233445554444 455556666667777777777777676554444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-08 Score=90.89 Aligned_cols=119 Identities=20% Similarity=0.148 Sum_probs=86.2
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hhh-cchhHHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SFS-KDSSFLFMGRLLEGFG 151 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~r~l~G~~ 151 (336)
+.+++|.++.+.+++.++..++..++.++.|++.||+|||+.+..+..+..+..+.. ... .+.+.+.++-.+.+.+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC 300 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999999999999988876654433222 222 2344444444445555
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHH-HHHHHHHHHHHhhc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLGL 195 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~ 195 (336)
.+...+....++.|..| ++|+.+.+..+. ...+|..+++.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666667778776 889999998654 35677778777754
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=88.47 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=109.0
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HHhhcchhHHHHHHHHHHHHhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISFSKDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~g~ 154 (336)
+++.+|+|+..++.+.+......++.+++.|.++||+|++...+.+..+..+..-. ..++ .+.=.+...++|+....
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysl 368 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSL 368 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHH
Confidence 68899999999999999999999999999999999999998888776665544432 2222 12223456677887766
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----h--h-HHHHHHhHHHHHHHHHHhhcc
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----N--W-RVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~--w-~~~~~~~~~~~~~~~~~~~~~ 220 (336)
.-...+..++...|.++-|++.|..+...++|-.+-|++++.+ + | +..|.+.+.+++....+++.+
T Consensus 369 lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 369 LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 6556778888899999999999999999999999999998776 1 3 355555666666665554444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=98.26 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=106.3
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGV 152 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~ 152 (336)
++..+|.++.+.+.......++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+...+..++.|++.
T Consensus 286 lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~ 365 (495)
T PRK14995 286 LQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSA 365 (495)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhH
Confidence 456689999999999999999999999999999999999999988888887777655432 35555667788999999
Q ss_pred hhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+
T Consensus 366 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 366 ASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999999999999999999999999887765
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=95.46 Aligned_cols=143 Identities=12% Similarity=0.019 Sum_probs=107.9
Q ss_pred hHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHH
Q 019729 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK-------DSSFLFMGRLL 147 (336)
Q Consensus 75 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l 147 (336)
.+++++|.++.+.+.+...+.+...+..+.+|+++||+|.+|++......++++..+.++.+ +...+++.-+.
T Consensus 244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999888888888877653 33333333333
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHHHhh
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
.++..|........++..++| ++-|...|+.....++|++.-|..-+.. .++..|++...+.+++.+..+
T Consensus 324 l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 324 LFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred HHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445556666665 4789999999999999987776665443 488888888777777765433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.8e-09 Score=93.52 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=98.6
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~ 150 (336)
..|.+.++.|.+..+.+.+.++..++..+++++.|++.||+ +||+.+..+.++.+++.+.+.+.++..... .-++.|+
T Consensus 219 ~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~ 297 (355)
T TIGR00896 219 WLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGL 297 (355)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHH
Confidence 45666677899999999999999999999999999999999 567777777777777777666655433322 4567899
Q ss_pred HhhhhhhhHhHHHHhccC-CCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 151 GVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+.|..++...+.+.+..+ +++++...++.+....+|..++|.+.+.+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988887777765554 56678888988888888888898887665
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-08 Score=91.92 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=101.7
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 156 (336)
++.+|.++.+.++....+.++..++.++.+++.||+|+|+++..+.++.+++.++..+.++.. .+..-.+.|++.+..+
T Consensus 287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~ 365 (438)
T PRK10133 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY 365 (438)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999988888777776666655542 3456678999999999
Q ss_pred hhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHHH
Q 019729 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTL 212 (336)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~ 212 (336)
|...+...+..|+ +.+.+.++..... +|..++|.+.+.+ | -|..|++..+..+.
T Consensus 366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999875 4667777765433 5666666665544 4 45666554444333
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-08 Score=92.65 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=90.1
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-----SKDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~ 150 (336)
+.+...-+.+..+++.++..++.+++.+++++++||+|+|+.+.++..+.+++.+...+ ..+.+.+++.-++.|+
T Consensus 257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~ 336 (473)
T PRK10429 257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNI 336 (473)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 33333334556677777777899999999999999999999999888776666554432 2345666777788999
Q ss_pred HhhhhhhhHhHHHHhccC-------CCcchhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 151 GVGVISYTVPVYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
+.+...+...++++|..+ .+..|...+......-+|..+++.+.+.
T Consensus 337 ~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 337 GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999965 3334557777877777888777776644
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=97.11 Aligned_cols=149 Identities=18% Similarity=0.169 Sum_probs=113.5
Q ss_pred hHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hch-hHHHHHHHHHHHHHHHHHHhhcc------hhHHHH
Q 019729 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGR-KGSLMIAAVPNIIGWLIISFSKD------SSFLFM 143 (336)
Q Consensus 75 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------~~~~~~ 143 (336)
.+.+..|+++..+|.+..+.-+.-++.-|+.|.++|| +|| |+.++++.+..++.+.++-.+++ ....++
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v 117 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV 117 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence 3677789999999999999999999999999999996 686 45566777888888888887763 344566
Q ss_pred HHHHHHHHhhhhhhhHhHHHHhccC-CCcchhHHhHHHHHHHHHHHHHHHhhcc-----------chhHHHHHHhHHHHH
Q 019729 144 GRLLEGFGVGVISYTVPVYIAEIAP-QNMRGSLGSVNQLSVTIGIMLAYLLGLF-----------VNWRVLAVLGVLPCT 211 (336)
Q Consensus 144 ~r~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~-----------~~w~~~~~~~~~~~~ 211 (336)
.-.+.+++......+..++.+|+.+ +++|.+..++-..+..+|.++...+... .||+...++.+++.+
T Consensus 118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~ 197 (467)
T COG2211 118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV 197 (467)
T ss_pred HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 6788889988888888999999985 5899999999888888886655443321 267777777666666
Q ss_pred HHHHH-hhcccCc
Q 019729 212 LLIPG-LFFIPES 223 (336)
Q Consensus 212 ~~~~~-~~~~~e~ 223 (336)
+..+. ++-++|.
T Consensus 198 i~~l~~~~~v~ER 210 (467)
T COG2211 198 ILLLFCFFNVKER 210 (467)
T ss_pred HHHHHHHHHhhcc
Confidence 55443 3334553
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-08 Score=92.90 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=105.8
Q ss_pred hHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 019729 75 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 75 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 154 (336)
.+++.+|.++.+.|++.+...++..+++++.+++.||+++|+++..+.. .++..+..++.++++..++..++.|++.+.
T Consensus 231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~ 309 (393)
T PRK11195 231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF 309 (393)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 3556789999999999999999999999999999999999988887753 344444555666777677778889999888
Q ss_pred hhhhHhHHHHhccCCCc-chhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHH
Q 019729 155 ISYTVPVYIAEIAPQNM-RGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 213 (336)
..+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +-+..+++.+...++.
T Consensus 310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (393)
T PRK11195 310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVA 372 (393)
T ss_pred hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888888888766554 79999999999999988888777644 4344444433333333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=93.50 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=103.7
Q ss_pred hhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHH
Q 019729 71 PTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLL 147 (336)
Q Consensus 71 ~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l 147 (336)
...+.+.++ +|.+ +..+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++.-++
T Consensus 246 ~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 324 (428)
T PF13347_consen 246 TFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFIL 324 (428)
T ss_pred hHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444444 4544 5678888899999999999999999999999999999999999998888875 88999999999
Q ss_pred HHHHhhhhhhhHhHHHHhccCC-------CcchhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
.|++.+..++...++++|..+. ++.|...+..+....+|..+++.+.+.
T Consensus 325 ~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 325 AGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred hHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999973 334778888888888887777776643
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-07 Score=85.55 Aligned_cols=139 Identities=19% Similarity=0.303 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHhh-cc-hhHHHHHHHHHHHHhhhhhhhHhHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIA-AVPNIIGWLIISFS-KD-SSFLFMGRLLEGFGVGVISYTVPVYI 163 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~~~~~~~~~~-~~-~~~~~~~r~l~G~~~g~~~~~~~~~~ 163 (336)
.++..++..+...+..|+.|-++|+-|+||.++.. ..+..++++++.+. ++ ++...+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999976665544 44445566666653 33 33444445555567888888899999
Q ss_pred HhccCCCcc--------------------------hhHHhHHHHHHHHHHHHHHHhhccc------------hhHHHHHH
Q 019729 164 AEIAPQNMR--------------------------GSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVL 205 (336)
Q Consensus 164 ~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~ 205 (336)
.|+.+++.+ ++..+.-...+.+|+++...+.-.+ +-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999988 8888887777778877766654222 24777777
Q ss_pred hHHHHHHH-HHHhhcccCchh
Q 019729 206 GVLPCTLL-IPGLFFIPESPR 225 (336)
Q Consensus 206 ~~~~~~~~-~~~~~~~~e~~~ 225 (336)
.++..++. +...+++||.|+
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCC
Confidence 77765554 445667787754
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=86.43 Aligned_cols=122 Identities=20% Similarity=0.110 Sum_probs=93.4
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH-HHHHHHHHHh--hcchhHHHHHHHHHHHHh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWLIISF--SKDSSFLFMGRLLEGFGV 152 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~--~~~~~~~~~~r~l~G~~~ 152 (336)
+.+.+|.+..+.+++.....++..++.++.+++.||+|++......... ..+....... ..+.+.+++..++.|++.
T Consensus 234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 313 (394)
T PRK11652 234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA 313 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4455899999999999888999999999999999999854433322222 2222222222 234566777789999999
Q ss_pred hhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccch
Q 019729 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN 198 (336)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 198 (336)
+...+...++..|.+| ++++...++.+....+|..+++.+++.+.
T Consensus 314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999887 67899999999999999999999987774
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-07 Score=88.17 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--hcchhHHHHHHHHHHHHhhhhhhhHhHH
Q 019729 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 162 (336)
+..+.+.....+...++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999999887766644433222 3456667778889999999999999999
Q ss_pred HHhccCC-------CcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 163 IAEIAPQ-------NMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 163 ~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
++|..+. +..|...+..+....+|..+++.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998862 2335567778777788888887776543
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-08 Score=84.34 Aligned_cols=148 Identities=24% Similarity=0.423 Sum_probs=117.4
Q ss_pred ccccccchhhHhHhhhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc--hh
Q 019729 64 FTCGYSSPTQAEIISDLKLTI--SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SS 139 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~ 139 (336)
+.........+.+..+++.+. ...++..+...++..++.++.|.+.||+|||+.+..+.....++.+.+++..+ .+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 344445556666777777665 47899999999999999999999999999998888888766666667777666 88
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHhccCC-CcchhHHhHHHH-HHHHHHHHHHHhhccc------hhHHHHHHhHHHHH
Q 019729 140 FLFMGRLLEGFGVGVISYTVPVYIAEIAPQ-NMRGSLGSVNQL-SVTIGIMLAYLLGLFV------NWRVLAVLGVLPCT 211 (336)
Q Consensus 140 ~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~ 211 (336)
.+++.|++.|++.+...+...+++.|++|. ++|+...+.... ...+|..+++.++..+ +||..+........
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 889999999999999999999999999997 678888888777 5777888887666433 68886666555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-07 Score=84.47 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=95.2
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH---Hh--hcchhHHHHHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLII---SF--SKDSSFLFMGRL 146 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~r~ 146 (336)
..|.+.+++|.+..+.++......++..++.++.+++.||+|+|+.+....+..+++.+.. .. .++...+++...
T Consensus 225 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (401)
T PRK11043 225 GSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFC 304 (401)
T ss_pred HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3455667789999999988888888999999999999999999987766555544443322 22 234555556677
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+.|++.+..++.......+..| ++|+++.++++.....+...++.+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 305 VMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888888988888878776 6899999999988777777777777655
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=86.46 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=72.3
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc----------------
Q 019729 133 SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF---------------- 196 (336)
Q Consensus 133 ~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~---------------- 196 (336)
+...+++.+++.-++.|.|.+...+..+.++++..|++++++.+++.+..+++|.+++|.+++.
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3456899999999999999999999999999999999999999999999999999999999863
Q ss_pred ----chhHHHHHHhHHHHHHHHHHhhc
Q 019729 197 ----VNWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 197 ----~~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
.+|+++|++.+.+.++..+.+.+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25888888665554444333333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=92.37 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=116.2
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHH
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRL 146 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~ 146 (336)
.+.+|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++.+..... ++.+.++..-+
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 35689999999999999999999999999999999999999999999998877554311 33334555678
Q ss_pred HHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-----hHHH---HHHhHHHHHHHH
Q 019729 147 LEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-----WRVL---AVLGVLPCTLLI 214 (336)
Q Consensus 147 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-----w~~~---~~~~~~~~~~~~ 214 (336)
+.+++.+..+.+...++.+..|++.+++..++.+...++|..+++.+++.+ | ++.. ..++.++.++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999877655 3 3322 223444455555
Q ss_pred HHhhcccC
Q 019729 215 PGLFFIPE 222 (336)
Q Consensus 215 ~~~~~~~e 222 (336)
...+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 55567785
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=92.34 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=117.4
Q ss_pred HHHhhhhhhccccccchhhHhHhhhccCCchh-HHHHHH----HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 019729 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISE-FSIFGS----LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (336)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~----~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (336)
..+-.+..++......+..+......+.+... .+.... ...+...+.++..|.++||+|||..+.+..+...+..
T Consensus 27 ~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~ 106 (463)
T KOG2816|consen 27 LFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPA 106 (463)
T ss_pred HHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhH
Confidence 33334444455444445554444444433222 222333 3467888999999999999999999999998888888
Q ss_pred HHHHhhcchhHHHHHHHHHHH--HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHH
Q 019729 130 LIISFSKDSSFLFMGRLLEGF--GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLA 203 (336)
Q Consensus 130 ~~~~~~~~~~~~~~~r~l~G~--~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~ 203 (336)
+...+.. +|. ++ +.|+ +.+.......++++|....++|....|+.+.....+..++|.+++.+ +.-..+
T Consensus 107 ~~~~~~~-~~~-~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f 181 (463)
T KOG2816|consen 107 LCLLFQG-YWF-FL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVF 181 (463)
T ss_pred HHHHHHH-HHH-hh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHH
Confidence 7777765 333 33 3333 23456777889999999999999999999999999999999988776 566778
Q ss_pred HHhHHHHHHHHH-HhhcccCchh
Q 019729 204 VLGVLPCTLLIP-GLFFIPESPR 225 (336)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~~e~~~ 225 (336)
.+..+..++..+ .++++||+-.
T Consensus 182 ~ia~~~~~~~~~y~~~~l~Esl~ 204 (463)
T KOG2816|consen 182 LIAAASGILSLLYMLLFLPESLQ 204 (463)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 887777777755 4567888743
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=90.14 Aligned_cols=129 Identities=9% Similarity=-0.109 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh-hc-----chhHHHHHHHHHHHHhhhhhhhHhH
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF-SK-----DSSFLFMGRLLEGFGVGVISYTVPV 161 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~-----~~~~~~~~r~l~G~~~g~~~~~~~~ 161 (336)
.....+..+...+..+++|+++||+|+|+++.++.+...++...... .+ +.+.+.+..+...++.|........
T Consensus 289 l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk 368 (462)
T PRK15034 289 LRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQ 368 (462)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHH
Confidence 33344556788899999999999999999999888877766643222 22 3455555444444555555566666
Q ss_pred HHHhccCC---------------------CcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHHHHH
Q 019729 162 YIAEIAPQ---------------------NMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 162 ~~~~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~~~~ 215 (336)
++.+++|+ ++-|.+.|+......+|+++-|.+-+.. ++...|+...++.+++++
T Consensus 369 ~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 369 MIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred hhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 77777764 1456778888888888888888554332 466777777776666654
Q ss_pred H
Q 019729 216 G 216 (336)
Q Consensus 216 ~ 216 (336)
+
T Consensus 449 ~ 449 (462)
T PRK15034 449 L 449 (462)
T ss_pred H
Confidence 4
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-07 Score=86.95 Aligned_cols=146 Identities=12% Similarity=0.166 Sum_probs=115.3
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcc--------hhHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKD--------SSFLF 142 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~~~ 142 (336)
....+.+.+|.+.+.+..+...+....-+..+++|+++|+ +||++.+.++.++..++.++.++... ....+
T Consensus 10 LvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l 89 (654)
T TIGR00926 10 LVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDL 89 (654)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHH
Confidence 3344566789998888888888888888999999999997 59999999999999999888776421 12355
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCc---chhHHhHHHHHHHHHHHHHHHhhccc-----------hhHHHHHHhHH
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNM---RGSLGSVNQLSVTIGIMLAYLLGLFV-----------NWRVLAVLGVL 208 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~-----------~w~~~~~~~~~ 208 (336)
++-.+.++|.|++-+...+...|.+++++ |.....++..+.++|+++++.+...+ +|...|.+.++
T Consensus 90 ~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i 169 (654)
T TIGR00926 90 LGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAI 169 (654)
T ss_pred HHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHH
Confidence 66778888999999999999999997643 55677778888889998887776443 48888888887
Q ss_pred HHHHHHHHh
Q 019729 209 PCTLLIPGL 217 (336)
Q Consensus 209 ~~~~~~~~~ 217 (336)
..+++++..
T Consensus 170 ~m~ia~lvf 178 (654)
T TIGR00926 170 LMILALIVF 178 (654)
T ss_pred HHHHHHHHH
Confidence 777765543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-09 Score=95.99 Aligned_cols=176 Identities=18% Similarity=0.057 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHH--------HHHH-HHHHHHHHHHHHHHHHhhhchhHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSI--------FGSL-ANVGAMVGAIASGQIAEYIGRKGSLMI 120 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~ 120 (336)
.-++..+..+|...+.....+.....+.+.+|+.+.+... ...+ ...+++.|-.+...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3445566667777666666666777788888876554322 1111 122333455666789999999999999
Q ss_pred HHHHHHHHHHHHHhhcc----hhHHHHHHHHHHH-HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc
Q 019729 121 AAVPNIIGWLIISFSKD----SSFLFMGRLLEGF-GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (336)
Q Consensus 121 ~~~~~~~~~~~~~~~~~----~~~~~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 195 (336)
+.+++.+..+..+...| ...++++..+..+ +.-+.......+-+|.+|.+.|++..|+.....-.|++++...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 99999999888887655 1222222222222 222333445566789999999999999999999999998866553
Q ss_pred c---------chhHHHHHHhHHHHHHHHHHhhcccCchh
Q 019729 196 F---------VNWRVLAVLGVLPCTLLIPGLFFIPESPR 225 (336)
Q Consensus 196 ~---------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 225 (336)
. .+.++.+++.+.+.++..+..+++|||.+
T Consensus 464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 3 37789999999999999998899999864
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-07 Score=78.84 Aligned_cols=168 Identities=17% Similarity=0.119 Sum_probs=128.3
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAV 123 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~ 123 (336)
.+..|.+.+...+..+.++.. ..-+|.+..|.|+|..+.|++.++..+..+..++....+.+|. ++|+..+....
T Consensus 207 ~~~aW~vtLfmGlqS~~~Y~~----~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 207 SPLAWQVTLFMGLQSLLYYIV----IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred CchhHHHHHHHHhhHHHHHHH----HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 344566655555554444332 3457888999999999999999999999999999999999965 67888888888
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCC-cchhHHhHHHHHHHHHHHHHHHhhccc-----
Q 019729 124 PNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN-MRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (336)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~~----- 197 (336)
++.++.+.+.+.+....++- -++.|++.|+.++....++.+..+.. +-+...++.+....+=..+||.+.+++
T Consensus 283 ~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 283 LMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 88888888888765433322 48999999999999999999888654 445566677777777788889998877
Q ss_pred hhHHHHHHhHHHHHHHHHHh
Q 019729 198 NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 198 ~w~~~~~~~~~~~~~~~~~~ 217 (336)
+|+...+......+...+.-
T Consensus 362 sw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 362 SWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 79988877666666554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-07 Score=87.01 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHHhh
Q 019729 87 FSIFGSLANVGAMVGAIAS----GQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD---------SSFLFMGRLLEGFGVG 153 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~g 153 (336)
.+++.++..+...+..++. +++.+|++.++.+.++.++.+++.+..+...+ .++++...++.|++.+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4666667776666666666 55566666667888999999999888776644 4578889999999999
Q ss_pred hhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--------------hhHHHHHHhHHHHHHHH
Q 019729 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLI 214 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~~~~~~~~~~~~ 214 (336)
...|...+++.+..|++.||+.+|.+.....+|..++..+.... +..+.|...++.+++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888887776665311 25566766665555443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-07 Score=85.32 Aligned_cols=131 Identities=21% Similarity=0.155 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch-----hHHH--HHHHHHHHHHHHHHHh---------hcchhHHHHHHHHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGR-----KGSL--MIAAVPNIIGWLIISF---------SKDSSFLFMGRLLEGF 150 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~ 150 (336)
.+++.++..+.-.+.+++..++-.|.+| +... .+|.++.+++.+..++ ..+++++++..++.|+
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888876654444443 3333 6788888877777664 3588889999999999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHh
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
|.....|...+++.+..|++.||+.+|++.....+|..+++.+.... +|...|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887544 67777777666655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=67.54 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=74.0
Q ss_pred hhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHH
Q 019729 62 FGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL 141 (336)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (336)
.|+.+..++|.+|.++++.++|.++.+++.+...+|+++|++...++.++..+++.+..+.+...+..+.+++.++.+.+
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45677788899999999999999999999999999999999999999999889999999999999999999999887654
|
Note that many members are hypothetical proteins. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.8e-07 Score=78.42 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=94.3
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhHHHHHHH-HHHHHHHHHHHhh-----c--------
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG-----RKGSLMIAA-VPNIIGWLIISFS-----K-------- 136 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~-~~~~~~~~~~~~~-----~-------- 136 (336)
+..|++++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+++.. .+...+..+..++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 567899998888888888877765 5899999999999 888777553 4434444333331 2
Q ss_pred ch---hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 137 DS---SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 137 ~~---~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
.+ ....+...+.|++.+...+...++++|..|+++|+++.++......+|.+++..+.+.+
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 13344577899999999999999999999999999999999999999999988887654
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-06 Score=79.59 Aligned_cols=115 Identities=17% Similarity=0.249 Sum_probs=92.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHhhhhhh
Q 019729 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK--DSSFLFMGRLLEGFGVGVISY 157 (336)
Q Consensus 80 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~ 157 (336)
+|-++....+.......+.+++.+++..+++|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.+++.+...+
T Consensus 267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence 455555666777777888888899999999999999999999999999998888765 677888888999999999999
Q ss_pred hHhHHHHhccC-------CCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 158 TVPVYIAEIAP-------QNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 158 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
..+++++|..+ .+.-|...+......-+|..++..+.
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999998874 23335666677766666666665444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-07 Score=83.93 Aligned_cols=177 Identities=16% Similarity=0.072 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 45 SVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
.++.......+.......|++ ....+.+.+.+..|.+.+. .+...+..+...++..++.++.||+|||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~--~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGIN--YVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCc--eEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence 334444344444433334433 3444566677777877554 5666667777788888889999999999999999999
Q ss_pred HHHHHHHHHhhcc-------------hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHH
Q 019729 125 NIIGWLIISFSKD-------------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191 (336)
Q Consensus 125 ~~~~~~~~~~~~~-------------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 191 (336)
+.++.++++.... ...+...-+.......+..++.+.+.+|.+|.+.|+++.++......+...+-.
T Consensus 369 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~ 448 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS 448 (513)
T ss_pred HHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence 9999988775421 111222223333334456667778999999999999999987666555544332
Q ss_pred Hhhc----cchhHHHHH-HhHHHHHHHH-HHhhcccCch
Q 019729 192 LLGL----FVNWRVLAV-LGVLPCTLLI-PGLFFIPESP 224 (336)
Q Consensus 192 ~~~~----~~~w~~~~~-~~~~~~~~~~-~~~~~~~e~~ 224 (336)
.... ..++...|. +.++..+... ...+++||+.
T Consensus 449 ~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETk 487 (513)
T KOG0254|consen 449 FFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETK 487 (513)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCC
Confidence 2221 112233333 3444444444 5667889985
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.8e-11 Score=109.53 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=98.4
Q ss_pred hhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH--h--h-cc----hhHHH
Q 019729 72 TQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS--F--S-KD----SSFLF 142 (336)
Q Consensus 72 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~-~~----~~~~~ 142 (336)
..+.+.+..+.+.. -....+..+...++.++..++.||+|||+.++.+.++.+++.+.++ . . ++ ....+
T Consensus 275 ~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 352 (451)
T PF00083_consen 275 YSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSI 352 (451)
T ss_pred cccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44556677777766 2233344455566777778999999999999999988888877664 1 1 11 11122
Q ss_pred HHHHHHHHH-hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHHHHHHH
Q 019729 143 MGRLLEGFG-VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 143 ~~r~l~G~~-~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~~ 216 (336)
+.-.+...+ ..+..++...+..|.+|.+.|+++.++......++.++++.+...+ + +.....+.++..+..++.
T Consensus 353 ~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~ 432 (451)
T PF00083_consen 353 VFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFV 432 (451)
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhhe
Confidence 222222222 2244566778899999999999999999888888888887776444 3 333333334444444556
Q ss_pred hhcccCch
Q 019729 217 LFFIPESP 224 (336)
Q Consensus 217 ~~~~~e~~ 224 (336)
.+++|||.
T Consensus 433 ~~~lpET~ 440 (451)
T PF00083_consen 433 YFFLPETK 440 (451)
T ss_pred eEEEeeCC
Confidence 77899985
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-08 Score=88.37 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=84.5
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh--hc--chhHHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF--SK--DSSFLFMGRLLEGFG 151 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~r~l~G~~ 151 (336)
+++.+|.++.+.+++.++..++..++.++.|+++||+|||+.+..+......+..+..+ .+ +.+.+++...+.+++
T Consensus 252 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (366)
T TIGR00886 252 FKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFF 331 (366)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999998887777666665555443 22 455555555556666
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHH
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 186 (336)
.|...+...+++.+..| +++|...|+.+....+|
T Consensus 332 ~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 332 SGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred hccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 66666777778888887 68999999988776654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.3e-08 Score=88.74 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=108.9
Q ss_pred HHHhhhhhhccccccchhhHhHh-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch---------hHHHHHHHHH
Q 019729 55 VALGPIQFGFTCGYSSPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR---------KGSLMIAAVP 124 (336)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~ 124 (336)
+.++.+........+....|.+. +-+|++..+.|++.++..+...+..+++|.++||.-+ |..-.++...
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~ 342 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGG 342 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHH
Confidence 33344444444444555566555 4589999999999999999999999999999998744 3333455566
Q ss_pred HHHHHHHHHhhcc-hhHHHHHHHHHHHHhhhhhhhH-hHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----
Q 019729 125 NIIGWLIISFSKD-SSFLFMGRLLEGFGVGVISYTV-PVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----- 197 (336)
Q Consensus 125 ~~~~~~~~~~~~~-~~~~~~~r~l~G~~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----- 197 (336)
.+++.+..++.++ .....+.-+..+.+..+....+ ..-..+. .+++-+..+|+.+....+..+++|.+.+.+
T Consensus 343 ~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t 421 (466)
T KOG2532|consen 343 PAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNT 421 (466)
T ss_pred HHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCC
Confidence 6666666666653 2212222222222222222222 2222222 457889999999999999999999998766
Q ss_pred --hhHHHHHHhHHHHHHHHHHhhc
Q 019729 198 --NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 198 --~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
.||..|++.+++.++..+...+
T Consensus 422 ~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 422 REEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred HHHHHHHHHHHHHHHHHhchheeE
Confidence 6999999999888877554443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=80.58 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhhcc---------------------hhHHHHHH
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSKD---------------------SSFLFMGR 145 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r 145 (336)
.+....+.+...+.+++..++++|+|+ |++..++.++.+++.+...+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 344555556666778888999999995 77778998888888877765442 25677778
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCC--CcchhHHhHHHHHHHHHHHHHHHhhccc------hhHHHHHHhHHHHHHHHHH-
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPG- 216 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~- 216 (336)
.+.|+..+..+.+.++++++..++ ++.|..+|+.|.+..+.+++.....+.+ +-.+.+.++++.++++.+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~ 467 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLA 467 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHH
Confidence 899999999999999999999995 4559999999999999998887766553 3446788888888887554
Q ss_pred hhcccCch
Q 019729 217 LFFIPESP 224 (336)
Q Consensus 217 ~~~~~e~~ 224 (336)
++.+|.++
T Consensus 468 ~~~~~~~~ 475 (477)
T TIGR01301 468 LILLPRPR 475 (477)
T ss_pred HHhCCCCC
Confidence 45567654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-06 Score=79.14 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHhhhhhhhHhHH
Q 019729 85 SEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKD--SSFLFMGRLLEGFGVGVISYTVPVY 162 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~ 162 (336)
...+.+..++.++.+++.+++++++||+|+|+.+..+..+.++..++..+.++ ...+++.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888889999999999999999999877655544443333333222 2234445566788777777777788
Q ss_pred HHhccCC-----Ccc--hhHHhHHHHHHHHHHHHHHHhhc
Q 019729 163 IAEIAPQ-----NMR--GSLGSVNQLSVTIGIMLAYLLGL 195 (336)
Q Consensus 163 ~~~~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~ 195 (336)
++|..+- .+| |...+......-+|..+++.+++
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877662 233 44445555666666666655543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.70 E-value=9e-07 Score=81.00 Aligned_cols=124 Identities=14% Similarity=-0.014 Sum_probs=92.3
Q ss_pred hhhHhHhhhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 71 PTQAEIISDL--KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 71 ~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
..++.+.++. +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... +..-++.
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~ 331 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLC 331 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3444444443 444444566677777888999999999999999999999999888888888888776544 5667788
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
|++.+..+|...+...+..+++.+....++... .+|+.+.|.+.+.+
T Consensus 332 glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~ 378 (410)
T TIGR00885 332 SAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFI 378 (410)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHH
Confidence 888889999999999999986654334443332 28888888877655
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=88.74 Aligned_cols=144 Identities=18% Similarity=0.225 Sum_probs=118.7
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVI 155 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 155 (336)
-.+++|-.+...|........+-++.-++.+++..|+|+-+++.+++.+.++=.+..++.+|.|+.+..-+++|+..+..
T Consensus 397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali 476 (618)
T KOG3762|consen 397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI 476 (618)
T ss_pred HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence 45677766677787777778888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHhccCCCcchhHHhHHHH-HHHHHHHHHHHhh----ccchhHHHHHHhHHHHHHHHHHhhc
Q 019729 156 SYTVPVYIAEIAPQNMRGSLGSVNQL-SVTIGIMLAYLLG----LFVNWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 156 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
+....+|++...|++.|..+.++.+. ..++|--+|.+++ ..++-|..|.+.++.+++.++....
T Consensus 477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998654 3444544555554 4457788888777766665554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.5e-06 Score=73.46 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=112.6
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHHh
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-YIGRKGSLMIAAVPNIIGWLIISF---SKDSSFLFMGRLLEGFGV 152 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~ 152 (336)
.+-+|++..+...++.....|.+++....|++.. |.++++.-.+++.+.+++..+..+ ..+.+.+...-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4558999999999999999999999999998887 678888877887777666655443 457788888999999999
Q ss_pred hhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc--------------hhHHHHHHhHHHHHHHHHH
Q 019729 153 GVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------NWRVLAVLGVLPCTLLIPG 216 (336)
Q Consensus 153 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------~w~~~~~~~~~~~~~~~~~ 216 (336)
|.+.....+.+.+...+++.|..+|.+.....++..++..+++.+ +|...|.+-++..++++++
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888777777776443 4556666655555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-06 Score=79.17 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHH-------HHHHHHHHHHHHHHHH-----hh-----cchhHHHHHHHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGS-------LMIAAVPNIIGWLIIS-----FS-----KDSSFLFMGRLLEG 149 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G 149 (336)
.+++.++..+...+..++.+++.||+|+|+. +.+|.++.+++.+..+ .. .+.++++..-++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3566666667787889999999999999873 6677777666654321 21 34677778899999
Q ss_pred HHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhc
Q 019729 150 FGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL 195 (336)
Q Consensus 150 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 195 (336)
+|.+...+...+++.+..|++.++.++|+++....+|..++..++.
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887774
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.7e-06 Score=65.33 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=91.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhH
Q 019729 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPV 161 (336)
Q Consensus 82 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 161 (336)
+++..--.-.++......+++++.+.+.+++|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..++....
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344343455666777788888999999999999999999999998655443 4567788899999999999999999999
Q ss_pred HHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 162 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
++.+..+++.|++..+++......+.++|..+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777777777776554
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-05 Score=71.82 Aligned_cols=213 Identities=14% Similarity=0.158 Sum_probs=128.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHHHHhhcc--hh-HHHHHHHHHHHHhhhhhhhHhH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKG-SLMIAAVPNIIGWLIISFSKD--SS-FLFMGRLLEGFGVGVISYTVPV 161 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~r~l~G~~~g~~~~~~~~ 161 (336)
..+...++..+...+-+|+.|.++|..|+|| .+-+...+..++.++..++++ ++ ..++...+..++.........+
T Consensus 59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence 3577788888899999999999999999555 555556666677777777665 44 3444567777888888888999
Q ss_pred HHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh------c----------------cchhHHHHHHhHHHHHHHHH-Hhh
Q 019729 162 YIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG------L----------------FVNWRVLAVLGVLPCTLLIP-GLF 218 (336)
Q Consensus 162 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~------~----------------~~~w~~~~~~~~~~~~~~~~-~~~ 218 (336)
++.+..++++-++..++-.....+|+.+.-.+. + ...-|..+.++++..++..+ .++
T Consensus 139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~ 218 (438)
T COG2270 139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL 218 (438)
T ss_pred HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence 999999988888877765555555555443332 0 01356667766666555433 444
Q ss_pred cccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhc
Q 019729 219 FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSG 298 (336)
Q Consensus 219 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (336)
.+++.++- +... .+.....-++-..++++.+++++....++.. +...-|
T Consensus 219 ~v~~~~~~---~~~~------------------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~----~~~~DG 267 (438)
T COG2270 219 NVHDAEKI---SSPP------------------------PTALRNGFKELKSTFKEIRGRKNLVLFLIAR----FFYIDG 267 (438)
T ss_pred cccccccc---cccc------------------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHhh
Confidence 55554320 0000 0000011112334555666555444433332 223335
Q ss_pred hHHHHHhHHHHHH-hcCCCCcchhHHHHHHHH
Q 019729 299 INGVLFYSSNIFA-NAGKINISLDVILPIVEA 329 (336)
Q Consensus 299 ~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~ 329 (336)
.+.+......+-. ++|++..+...+....++
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~v 299 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSV 299 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 6667776666666 559988777655443333
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-07 Score=78.40 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=120.1
Q ss_pred hHHHHHHHHHhhhhhhccccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHH
Q 019729 48 VVFCVLVVALGPIQFGFTCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVP 124 (336)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~ 124 (336)
.+.....++.++ ......-|.++. +.+.+..+.-+.|...--..+.+.++..+.|.++||++ |-.....+++.
T Consensus 272 I~~~agai~~~n----~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~ 347 (464)
T KOG3764|consen 272 ILLIAGAITFSN----SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLAT 347 (464)
T ss_pred Hhhhhcchhhcc----chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHH
Confidence 344444444443 344455566665 45556644446676666677899999999999999999 53344455566
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcc------hhHHhHHHHHHHHHHHHHHHhhccc-
Q 019729 125 NIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMR------GSLGSVNQLSVTIGIMLAYLLGLFV- 197 (336)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~g~~~~~~~~~~~- 197 (336)
.++++....+++++.++++-++..|++.+...+.......+..+.++- |...++...++++|..+||.+++.+
T Consensus 348 ~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv 427 (464)
T KOG3764|consen 348 VGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV 427 (464)
T ss_pred HHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence 667777778899999999999999999988888877777777765443 5678888999999999999999876
Q ss_pred ---hhHHHHHHhHHHHHHHHH
Q 019729 198 ---NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 198 ---~w~~~~~~~~~~~~~~~~ 215 (336)
|++|...+.++..++..-
T Consensus 428 ~~iGF~wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 428 EAIGFEWLMTIIGILNLIYAP 448 (464)
T ss_pred eehhHHHHHHHHHHHHHHHHH
Confidence 888887777777666533
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=81.35 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHhhhhhhhHhHH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFS--KDSSFLFMGRLLEGFGVGVISYTVPVY 162 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~~~~~~ 162 (336)
..++......++..+++.+.|.+..+++| |+.++++..++.+++-+++.. +|....++.-++.|++.|.........
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~ 429 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI 429 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence 46788888999999999999999999887 566667776666544444432 355556677889999999888888888
Q ss_pred HHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---------------------------------------------
Q 019729 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV--------------------------------------------- 197 (336)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------------------------- 197 (336)
+.-..|+++-+.+.++......+|+.+|..+...+
T Consensus 430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i 509 (599)
T PF06609_consen 430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI 509 (599)
T ss_pred eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence 88888999999999998888888887775543111
Q ss_pred ---------------------hhHHHHHHhHHHHHHHHHHhhcccCchhHH
Q 019729 198 ---------------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (336)
Q Consensus 198 ---------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (336)
++|+.|+....+.++++++.+++++..+++
T Consensus 510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m 560 (599)
T PF06609_consen 510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM 560 (599)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence 278899998888999988888888765543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-05 Score=71.00 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=82.0
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH-----hhcchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS-----FSKDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~r~l~G~ 150 (336)
+++.+|.+..+.++.......+..++..+.+.+.++.++++.+.....+..++.++.. ..+++...++..++.++
T Consensus 245 l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~ 324 (413)
T PRK15403 245 LIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAF 324 (413)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 4556799999999988888888888888888876554444443322222222222222 12333345667888888
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHH
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLP 209 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~ 209 (336)
|.+...+......- .-....+|++.++.+.....+..+++..++++ +-++.+...+++
T Consensus 325 G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 385 (413)
T PRK15403 325 GIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVV 385 (413)
T ss_pred HHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 88888877765332 22233578888888877777777777776655 233444444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=58.61 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=53.1
Q ss_pred ccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 019729 64 FTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP 124 (336)
Q Consensus 64 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 124 (336)
...+...|.+|.+.++.|++..+.|.+.++..+...++.+++|.++||+|+++.++....+
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3456667888888899999999999999999999999999999999999998877765544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-07 Score=79.53 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=101.6
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHH-HHHHHHHHHHHHhhcch-------
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLMIA-AVPNIIGWLIISFSKDS------- 138 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~~~~~~~~~~~~~~~------- 138 (336)
.+.+++..+.|++....+.+--..-+...+.+++.|..+|| |||||.++.. .++.+++.++.+++.+.
T Consensus 53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 34555778889999888888888888899999999999995 7988877655 45556777777765432
Q ss_pred ----------hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchh-HHhHHHHHHHHHHHHHHHhhccchhH
Q 019729 139 ----------SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLGLFVNWR 200 (336)
Q Consensus 139 ----------~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~~w~ 200 (336)
..++++-.+.=++........-+++.|.+.++++.+ +++++....++|+.+|..++.+.+|+
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~ 205 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLY 205 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCce
Confidence 233334444455666788889999999998887777 99999999999999999999888776
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=72.23 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=109.6
Q ss_pred hhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh---c--hhHHHHHHHHHHHHHHHHHHhhc----chhHH
Q 019729 71 PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI---G--RKGSLMIAAVPNIIGWLIISFSK----DSSFL 141 (336)
Q Consensus 71 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~~----~~~~~ 141 (336)
...+.+++++|+++++...+.++..+-. ...++.|.++|-+ | ||+-++++.++.+++.+..+..+ +....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 3456689999999999888777766654 4577899999987 3 45555566666655555555533 45556
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHhccC--CCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHH
Q 019729 142 FMGRLLEGFGVGVISYTVPVYIAEIAP--QNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~ 215 (336)
.+.-++..++......+.-+++.|... ++.|+...+.......+|.+++..+++.+ +++..|.+.+++.++..+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 666778888898999999999999883 33377788888888888999888887665 778888887777666654
Q ss_pred Hhhc-ccC
Q 019729 216 GLFF-IPE 222 (336)
Q Consensus 216 ~~~~-~~e 222 (336)
..++ .+|
T Consensus 170 ~~~~~~~e 177 (433)
T PF03092_consen 170 VALFLLEE 177 (433)
T ss_pred HHHHhhhh
Confidence 4443 444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-05 Score=69.56 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=99.8
Q ss_pred chhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 70 SPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 70 ~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
...++.+..+ .|.+..+.+...+.+..+..+|.+++.++..|+...|.+.+...+..+.++..+++++... +.+-++.
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~-~~~l~~i 334 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA-LYALFLI 334 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHH
Confidence 3344545555 8999999999999999999999999999999999999999999888888888888888544 4566788
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
|+..+..+|...+...+..| ++-... |..-....+|+.+.|.+.+.+
T Consensus 335 g~F~simfPTIfslal~~l~-~~ts~~-s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 335 GLFNSIMFPTIFSLALKNLG-EHTSVG-SGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred HHHhHHHHHHHHHHHHhccC-cccccc-ceeeeeheecchHHHHHHHHH
Confidence 99999999999999999998 444444 333444556777777777666
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00031 Score=64.78 Aligned_cols=126 Identities=8% Similarity=0.048 Sum_probs=91.1
Q ss_pred hhHhHhhhccCC-----chhHHHHHHHHHHHHHHH-HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh--c--c----
Q 019729 72 TQAEIISDLKLT-----ISEFSIFGSLANVGAMVG-AIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS--K--D---- 137 (336)
Q Consensus 72 ~~~~~~~~~g~s-----~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~--~---- 137 (336)
.+-.++|.+.++ .+...++-+...+...+. .++.+++++|++|++++.+....+....+++++. + +
T Consensus 25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 455577777663 245777777776665555 8899999999999999887776666665555543 1 1
Q ss_pred -----------------------hhHHHHHHHHHHHHhhhhhh-hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHh
Q 019729 138 -----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL 193 (336)
Q Consensus 138 -----------------------~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 193 (336)
.|...+.-+...+......+ ..+.+++|.++.++-.+..+++..+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444444445555 778999999999999999999999999999999988
Q ss_pred hccc
Q 019729 194 GLFV 197 (336)
Q Consensus 194 ~~~~ 197 (336)
...+
T Consensus 185 ~~~~ 188 (472)
T TIGR00769 185 IKYF 188 (472)
T ss_pred HHHH
Confidence 7554
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=73.98 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=100.6
Q ss_pred hHhHhhhc-cCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhhchh---------HHHHHHHHHHHHHHHHHHhhcchhH
Q 019729 73 QAEIISDL-KLTISE--FSIFGSLANVGAMVGAIASGQIAEYIGRK---------GSLMIAAVPNIIGWLIISFSKDSSF 140 (336)
Q Consensus 73 ~~~~~~~~-g~s~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---------~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (336)
+.++.+.+ |.+.++ ...+.++..++..+|.+..|+++...-+| -.+.+..+ +.++.+++++.-....
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~ 454 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA 454 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence 34566667 663322 22278888889999999988887222222 22333344 5555555555544367
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHH-HHhhccc--------------h---hHHH
Q 019729 141 LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLA-YLLGLFV--------------N---WRVL 202 (336)
Q Consensus 141 ~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~--------------~---w~~~ 202 (336)
+++..++.|++.|..+++....++|+|. |+-|+-..+......+|+.+- ..+.+.+ | .+..
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~ 533 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP 533 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence 8999999999999999999999999999 999999999888889988876 3333322 1 6788
Q ss_pred HHHhHHHHHHHHHHh
Q 019729 203 AVLGVLPCTLLIPGL 217 (336)
Q Consensus 203 ~~~~~~~~~~~~~~~ 217 (336)
|++.+.+++.+.+..
T Consensus 534 ~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 534 LAFLLGLSFLAFITS 548 (591)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777775543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=74.75 Aligned_cols=148 Identities=10% Similarity=0.004 Sum_probs=95.1
Q ss_pred hhhhhhccccccchhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh----hchhHHHHHHHHHHHHHH-HH
Q 019729 58 GPIQFGFTCGYSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEY----IGRKGSLMIAAVPNIIGW-LI 131 (336)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~ 131 (336)
+.+............+|.+.++ .|.+..+.+.+.+.+.++.+++.+++|+++|| +.+|........++.+.. +.
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAIS 360 (495)
T ss_pred HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555556667777776 66999999999999999999999999999999 778877777766665444 44
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchh-HHhHHHHHHHHHHHHHHHhh-cc----chhHHHHHH
Q 019729 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGS-LGSVNQLSVTIGIMLAYLLG-LF----VNWRVLAVL 205 (336)
Q Consensus 132 ~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~-~~----~~w~~~~~~ 205 (336)
....++.......-+..+.+.+...+.....+++......|.. ..+....+.+.++.+++.+- .. ..|.+.|..
T Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 361 LLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred HHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 4444434444444444444555666667777777776555544 34445555555555554443 22 256666643
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00013 Score=67.35 Aligned_cols=121 Identities=11% Similarity=0.205 Sum_probs=107.5
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHH-HHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASG-QIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 154 (336)
+...++++..+.+.+.+.......+++++.. .+...+|-|++..+|++...+..++.+++++.|+++....+.++. +.
T Consensus 268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~ 346 (463)
T KOG2816|consen 268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GI 346 (463)
T ss_pred EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cc
Confidence 5667899999999888888888888888777 888889999999999999999999999999999988888887775 47
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
..+...++++.+..++++|+..++....-++..+++|.+-+.+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 8899999999999999999999999999999999888876544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-05 Score=70.87 Aligned_cols=133 Identities=23% Similarity=0.332 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHhhhhhhhHhHHHHhccCC
Q 019729 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLFMGRLLEGFGVGVISYTVPVYIAEIAPQ 169 (336)
Q Consensus 93 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~ 169 (336)
.............+.+.|++|||..+..+.++..+++++.++..... ...+...+..++.+..+.....+.+|.+|+
T Consensus 358 ~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 358 LSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 33335566666668999999999999999999999999999876543 355556666667777777889999999999
Q ss_pred CcchhHHhHHHHHHHHHHHHHHHhhccchh--H-HHHHH-hHHHHHHHHHHhhcccCchh
Q 019729 170 NMRGSLGSVNQLSVTIGIMLAYLLGLFVNW--R-VLAVL-GVLPCTLLIPGLFFIPESPR 225 (336)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~w--~-~~~~~-~~~~~~~~~~~~~~~~e~~~ 225 (336)
..|..+.+.......+|.+++|.+...... . ..+.+ .....+.+++...++||+..
T Consensus 438 ~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 438 VVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 999999999999999999999988754421 1 12222 23333444455588999853
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.7e-05 Score=64.78 Aligned_cols=121 Identities=15% Similarity=0.212 Sum_probs=106.3
Q ss_pred hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 019729 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 77 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~ 154 (336)
...+|+++.+.|-+.+...++.++.+.......||.. -+-.+..++.+..-..++.+.++....+..+..+..+..+.
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~ 368 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS 368 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence 4678999999999998888888888888888888887 67777777777777777778888888888889999998888
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
..+....++....|.++||..+|+.....+++-++||.+++..
T Consensus 369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 8899999999999999999999999999999999999999655
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00075 Score=62.86 Aligned_cols=110 Identities=16% Similarity=0.169 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchh-H-----H-HHHHHHHHHHHHHHHHhh---------cchhHHHHHHHHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK-G-----S-LMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLEGF 150 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-~-----~-l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~ 150 (336)
.+|..++..+.-.+.+|+.+++=.|.+|| + . +.+|+++.+++.+.+.++ .+.+++++.-+++++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 57888888888888888888886676432 1 1 566777777776555431 256778888999999
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHH-HHHHHHHHHHhhcc
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLF 196 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~ 196 (336)
|.-...|+..+.+++..|++.|+..+|.+... ..+|..++..++..
T Consensus 390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764 46777777666543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00039 Score=63.38 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=97.8
Q ss_pred cchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh---hc-------ch
Q 019729 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF---SK-------DS 138 (336)
Q Consensus 69 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~-------~~ 138 (336)
+......+...-|+++...|..-+...+..+.+.+...++.+|+|..|.=+++......+..++.. .+ +.
T Consensus 277 f~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 277 FGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred CcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 344555566666999999999999999999999999999999999988888887766555544432 22 22
Q ss_pred hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 139 SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 139 ~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
..++.+-.+.-+|.=++.....-++.|..|+++||...|.-+....+-.++...++-.+
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444555666677777888999999999999999998888888777776666544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=59.25 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCC
Q 019729 91 GSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN 170 (336)
Q Consensus 91 ~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 170 (336)
.++......+++++.+.+.|+.|.|+.+.++...+....+...+-+ -+.+++...+.|+|.+..+.....|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 6777888899999999999999999999999999988877766654 556788999999999999999999999999999
Q ss_pred cchhHHhHHHHHHHHHHHHHHHhh
Q 019729 171 MRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 171 ~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
.+.+..++.......+.++|..+-
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhh
Confidence 999999998888887777775554
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0038 Score=57.21 Aligned_cols=109 Identities=20% Similarity=0.370 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHHHHHHHhh------------------cchhHHHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEY---IGRKGSLMIAAVPNIIGWLIISFS------------------KDSSFLFMGR 145 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r 145 (336)
.+...-...+|..++..+.+.+++| +||++.+.++..+..+.+++.-.. +++...++..
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 3444555566667777777777754 799999999998888887776553 1355777888
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
++.|++.+......+.++.... +++|..+.++.-.-..++..++-.....
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999 5889998888877777777665555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0012 Score=60.90 Aligned_cols=143 Identities=15% Similarity=0.240 Sum_probs=104.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHH
Q 019729 82 LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF----------SKDSSFLFMGRLLEGFG 151 (336)
Q Consensus 82 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~r~l~G~~ 151 (336)
+++...+.+..+..++.++|..+...+.-+..-|+++.++.++.++..+.-.. .++.+..+..-++..+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 88888898888889999999999988888888899888888777666553221 12222233345666776
Q ss_pred hhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------------hhHHHHHHhHHHHHHHHHHhhc
Q 019729 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 152 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
.+..+-+...+++|.+|+..-|+..++.....++|..++..++..+ +-.+..+++.+..++.+.+..+
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l 411 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL 411 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888999999999999999999888888888887777554 1224555566666666666667
Q ss_pred ccCch
Q 019729 220 IPESP 224 (336)
Q Consensus 220 ~~e~~ 224 (336)
+|+..
T Consensus 412 Lp~~~ 416 (433)
T PF03092_consen 412 LPPQK 416 (433)
T ss_pred cCCCc
Confidence 77653
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=59.82 Aligned_cols=112 Identities=23% Similarity=0.228 Sum_probs=79.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH---HHhhcchhHHHHHHHHHHHHhhhhhhhHh
Q 019729 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI---ISFSKDSSFLFMGRLLEGFGVGVISYTVP 160 (336)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 160 (336)
.++..+....+.+|-.++.--...+ |+-+.+.+.+.-++..+..++ .-+.++.+.+++.-+..|+..|..+.-..
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF 357 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTF 357 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4567788888887776665433222 332333322222222222222 22457888888889999999999999999
Q ss_pred HHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 161 VYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 161 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
..+.|-.|+++|..++|....+-.+|..++..++-.+
T Consensus 358 ~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 358 YRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=59.58 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh--c-c------hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCC---cchhHHhHHHHHH
Q 019729 116 GSLMIAAVPNIIGWLIISFS--K-D------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQN---MRGSLGSVNQLSV 183 (336)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~--~-~------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 183 (336)
|+++++.+++.+|.++..++ + . .+.++++-.+.++|.|+.-+...++.+|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888888888884443 2 2 257888899999999999999999999999876 3455667789999
Q ss_pred HHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhc
Q 019729 184 TIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 184 ~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
++|..+++.+..++ +|.+.|.++++..+++++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999998888776 7999999988887777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0015 Score=58.78 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccC
Q 019729 89 IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 168 (336)
.+.-+-.+-.++..+.+.++.+|+..+.=...+.++..++.++.+++++.+.-+++-.+.+++.|..-...-.+.+ .++
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG 141 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence 3444445566677788889999987555556677788889999999999988888889999988887777777644 555
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHHhhcc---c--hhHHHHHHhHHHHHHHHHHhh-cccC
Q 019729 169 QNMRGSLGSVNQLSVTIGIMLAYLLGLF---V--NWRVLAVLGVLPCTLLIPGLF-FIPE 222 (336)
Q Consensus 169 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~---~--~w~~~~~~~~~~~~~~~~~~~-~~~e 222 (336)
+ ...+.+..+.+.++++|+..-.. . +.|..+++...+.++..+..+ .+|.
T Consensus 142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 142 K----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred c----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 34666777777777776654322 2 456666666655554444433 4443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.033 Score=51.02 Aligned_cols=149 Identities=11% Similarity=-0.051 Sum_probs=74.6
Q ss_pred cccchhhHhHhhhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh------h--c-
Q 019729 67 GYSSPTQAEIISDLK-LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF------S--K- 136 (336)
Q Consensus 67 ~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~- 136 (336)
-++....+.+..+.. -+---.+...-+..+..++.++..|.+.||..|.++...+.+..-++..+.+. . +
T Consensus 19 R~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~ 98 (432)
T PF06963_consen 19 RMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS 98 (432)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 334444444444432 13223444455556677888889999999999999887776554333322221 1 1
Q ss_pred ---chhHH---HHHHHHHHH-HhhhhhhhHhHHHHhcc------CCCcchhHHhHHHHHHHHHHHHHHHhhccc----hh
Q 019729 137 ---DSSFL---FMGRLLEGF-GVGVISYTVPVYIAEIA------PQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NW 199 (336)
Q Consensus 137 ---~~~~~---~~~r~l~G~-~~g~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w 199 (336)
+.+.. ++.-.+.|. ..-.......+.=.||. +++.+.+.++...-.--+..+++|.+.+.+ +.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~ 178 (432)
T PF06963_consen 99 SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASP 178 (432)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 11111 111112221 11111112222223443 234444555555545555667777776655 66
Q ss_pred HHHHHHhHHHHHHHHH
Q 019729 200 RVLAVLGVLPCTLLIP 215 (336)
Q Consensus 200 ~~~~~~~~~~~~~~~~ 215 (336)
+...++.+...++.++
T Consensus 179 ~~~~~~i~~~N~~S~~ 194 (432)
T PF06963_consen 179 VIAAIFIAGWNLASVF 194 (432)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.02 Score=50.64 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=85.6
Q ss_pred hhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHH-HHHHHHHHHHHH
Q 019729 59 PIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAE-----YIGRKGSLMI-AAVPNIIGWLII 132 (336)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~-~~~~~~~~~~~~ 132 (336)
+...|.-.+... .+|.+.+.-|.|-++.+....++. -..-.+++.++.| |+||||..++ +..+.+..++..
T Consensus 40 YllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllL 116 (510)
T KOG3574|consen 40 YLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLL 116 (510)
T ss_pred HHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHH
Confidence 455566666666 788888888888877766544431 2344567888888 9999987543 334444444444
Q ss_pred Hhh-----------cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 133 SFS-----------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 133 ~~~-----------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
+.. ++...+....++.-+..+.-..+.-.+.-....+++-|.+......+...|.+++..+-
T Consensus 117 s~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 117 SYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 432 22223333445556666666666666666777888889888888888888888775543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0069 Score=57.56 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=111.2
Q ss_pred cchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhcc----------
Q 019729 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSKD---------- 137 (336)
Q Consensus 69 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~---------- 137 (336)
....+..+.++++.+...+.-..+.+.-...+..+.+++++|-| ||-+++.++.++..++.++..++..
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 44566678888898888888888888888888899999999986 8999999888888877655443211
Q ss_pred ---------------hhHHHHHHHHHHHHhhhhhhhHhHHHHhccC---C-Ccc--hhHHhHHHHHHHHHHHHHHHhhcc
Q 019729 138 ---------------SSFLFMGRLLEGFGVGVISYTVPVYIAEIAP---Q-NMR--GSLGSVNQLSVTIGIMLAYLLGLF 196 (336)
Q Consensus 138 ---------------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~---~-~~r--~~~~~~~~~~~~~g~~~~~~~~~~ 196 (336)
...++....+..+|.|+.-+...++-+|-++ + +.+ ...+.++.....+|..++..+.-+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 1245556677778999999999999999998 2 222 356777888888888887666544
Q ss_pred c----hhHHHHHHhHHHHHHHHHHh
Q 019729 197 V----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 197 ~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
. +|.+-|.+..+..++++++.
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHH
Confidence 4 89988888777666554443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.047 Score=51.56 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=69.5
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH---HHHHHH-H---hhcch-hHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI---IGWLII-S---FSKDS-SFLFMGRLL 147 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~-~---~~~~~-~~~~~~r~l 147 (336)
+.--+|-+....+.+.+++.+|..+|+.+++++.++.-++...+ -..+.. ++..+. . +.... ..++...++
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~-e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 119 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAV-ELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL 119 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888899999999999999999998874433333221 111111 111111 1 11111 122334556
Q ss_pred HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 148 EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 148 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
.++..|+..|....+..+... ++-+...|-......+|+++|.++.+++
T Consensus 120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 778888888887776655332 2234556666666677777776666443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.22 Score=46.51 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=73.3
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---------cc------------------
Q 019729 86 EFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD------------------ 137 (336)
Q Consensus 86 ~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~------------------ 137 (336)
....+-....+ +..+...+..+++++++|.+++-+....+.....++++. ++
T Consensus 59 ~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i 138 (491)
T PF03219_consen 59 VIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFI 138 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHH
Confidence 34444443323 556677788999999999998887766666555555542 11
Q ss_pred ----hhHHHHHHHHHHHHhhhhhh-hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 138 ----SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 138 ----~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
.|.+.+.-++.-+-.....+ .-+.+.+|.++.++-.+..+++..+.++|.+++..+...+
T Consensus 139 ~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 139 AMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222222332233334 4689999999999999999999999999999887776444
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0032 Score=54.79 Aligned_cols=149 Identities=15% Similarity=0.256 Sum_probs=108.3
Q ss_pred hhccCCchhHH-HHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 019729 78 SDLKLTISEFS-IFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVIS 156 (336)
Q Consensus 78 ~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 156 (336)
.+.+++..+.. -+.-+..-.+++.-.+.=.+.|-.-.|+++++-.+.......+..+.++.+.+=+.-++.|... ..-
T Consensus 34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaE 112 (433)
T KOG3810|consen 34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAE 112 (433)
T ss_pred CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHH
Confidence 34566655532 3334445566677777778899998899988888888888888889999988888888888876 456
Q ss_pred hhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------hhHHHHHHhHHHHHHHHHHhhcccCchhHH
Q 019729 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 227 (336)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 227 (336)
.+.++|+-+..+++++.++.+..-...-.|...|..++..+ ++...=.+......+..+..+++|..++-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 66788888888999999999998888888888887777655 344444444444455566667777666544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0048 Score=55.64 Aligned_cols=108 Identities=23% Similarity=0.130 Sum_probs=77.5
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch-hHHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHHHHhh
Q 019729 79 DLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-KGSLMIAAVPNIIGWLIISFSK----DSSFLFMGRLLEGFGVG 153 (336)
Q Consensus 79 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g 153 (336)
.-|.+....|++.....+++.+++.+.|.+.||... |.++++......++.+.....+ +.+.++..-.+.|++..
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~ 374 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT 374 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence 346666788999999999999999999999999874 6666666666555533222222 23455566778888888
Q ss_pred hhhhhHhHHHHhccCCCcchhHHhHHHHHHHHH
Q 019729 154 VISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG 186 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 186 (336)
+.+|+..-+-.|..-|..-+...|+.+....+=
T Consensus 375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f 407 (480)
T KOG2563|consen 375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIF 407 (480)
T ss_pred CCCCcceeeeeeeccccCCcccceeEEeehhHH
Confidence 899999888888876666677777765544443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.049 Score=50.02 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchh-------HHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRK-------GSLMIAAVPNIIGWLIISFS----------KDSSFLFMGRLLE 148 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~ 148 (336)
..+|..+...+.-++.+++..++..|.++| .-+-+++++.+.+.++.... .+.++++..-+++
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 357888888888899999999888886554 12345555555555544433 2567888899999
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhcc-------c---hhHHHHHHhHHHHHHHHH
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-------V---NWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~-------~---~w~~~~~~~~~~~~~~~~ 215 (336)
++|.=...|+..+++....|++-.+..++.+-.....|..++..++.. . .....|+.++...++..+
T Consensus 405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~ 481 (498)
T COG3104 405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGI 481 (498)
T ss_pred HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888777762 1 344566666665555433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0015 Score=54.77 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=75.4
Q ss_pred chhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 019729 70 SPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEG 149 (336)
Q Consensus 70 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G 149 (336)
.|..-.+.+.+|+.+.+++.+.........+...+.|-++||-|||+.-+.-++.+.++++ .-.++.|-.++++|.+-|
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGG 135 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGG 135 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhh
Confidence 3444446678899999999888888788888899999999999999975554444444432 334677888999999999
Q ss_pred HHhhhhhhhHhH-HHHhccCCCcchh
Q 019729 150 FGVGVISYTVPV-YIAEIAPQNMRGS 174 (336)
Q Consensus 150 ~~~g~~~~~~~~-~~~~~~~~~~r~~ 174 (336)
+.....+...-+ ++.|.- ++|+.
T Consensus 136 iaTsLLFSaFEsWliaEHn--ekr~F 159 (454)
T KOG4332|consen 136 IATSLLFSAFESWLIAEHN--EKRGF 159 (454)
T ss_pred HHHHHHHHHHHHHHHHHhh--hccCC
Confidence 999888887654 455654 34544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0011 Score=61.02 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=63.3
Q ss_pred hhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHHHHHhh
Q 019729 58 GPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMI-AAVPNIIGWLIISFS 135 (336)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~ 135 (336)
.++..+...+...|.++.+.+++|+++++.|.++..--+...++.|++|+++||+-+||.+++ +++....+.++..+.
T Consensus 19 f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 19 FYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred eeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence 344455566777888999999999999999999999999999999999999999986665555 456666677776664
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.028 Score=51.58 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=73.6
Q ss_pred HHhhhhhhccccccchhhHhHhhh--ccCCchhHHHHHHHH--HHHHHHHHHH-HHHHHhhhchhHHHHHHH-HHHHHHH
Q 019729 56 ALGPIQFGFTCGYSSPTQAEIISD--LKLTISEFSIFGSLA--NVGAMVGAIA-SGQIAEYIGRKGSLMIAA-VPNIIGW 129 (336)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~--~~~~~~~~~~-~g~l~dr~Grr~~l~~~~-~~~~~~~ 129 (336)
.+.++..|.-.+......|.+.++ -+.|-++.+...-+. +=.-++.+|+ =+..+.|+||||..++=. .+.++..
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m 85 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILM 85 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHH
Confidence 344566777777665567777776 677777765433221 1111233322 234555899999866443 2333333
Q ss_pred HHHHhhc----------------------ch--hHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH
Q 019729 130 LIISFSK----------------------DS--SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI 185 (336)
Q Consensus 130 ~~~~~~~----------------------~~--~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (336)
+..+... +. ..+....++.=+..+.-..+.-.+.-....+++++.+......+..+
T Consensus 86 ~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~ 165 (544)
T PF13000_consen 86 LYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTA 165 (544)
T ss_pred HHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhh
Confidence 3333211 00 01222222232333333333334445566778899988888888888
Q ss_pred HHHHHHHhh
Q 019729 186 GIMLAYLLG 194 (336)
Q Consensus 186 g~~~~~~~~ 194 (336)
|.+++..+-
T Consensus 166 Gyfls~tvF 174 (544)
T PF13000_consen 166 GYFLSFTVF 174 (544)
T ss_pred hHHHHHHHH
Confidence 887775543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=53.79 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhch-------hHHHHHHHH----HHHHHHHHHHhh-cchhHHHHHH
Q 019729 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGR-------KGSLMIAAV----PNIIGWLIISFS-KDSSFLFMGR 145 (336)
Q Consensus 78 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-------r~~l~~~~~----~~~~~~~~~~~~-~~~~~~~~~r 145 (336)
+-.|.+.++..++..++..++.+|.+++|.++||+.| .+.=.+... +.+...++.... .+...+....
T Consensus 276 ~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il 355 (493)
T KOG1330|consen 276 ELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLIL 355 (493)
T ss_pred HHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3346676777888999999999999999999999543 221111111 111122222222 2233334445
Q ss_pred HHHHHHh-hhhhhhHhHHHHhccCCCcchhHHhHHHHH-HHHHHHHHHHhhcc
Q 019729 146 LLEGFGV-GVISYTVPVYIAEIAPQNMRGSLGSVNQLS-VTIGIMLAYLLGLF 196 (336)
Q Consensus 146 ~l~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~ 196 (336)
++.|... ...++....+..|..|+++|..+.++-... ..+|.+-+|.+.+.
T Consensus 356 ~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 356 FLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred HHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence 5555533 345556677788999999999999985544 44455555534433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=41.28 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=88.2
Q ss_pred hhHhHhhhccCC---chhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhh---------cc-
Q 019729 72 TQAEIISDLKLT---ISEFSIFGSLANV-GAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---------KD- 137 (336)
Q Consensus 72 ~~~~~~~~~g~s---~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---------~~- 137 (336)
.+-.+++.+.++ +....++-+..-+ +..+..++.++++++..+.+++-+.+..+....+++++. ++
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 344466766554 3445666666666 778889999999999999999888877777777776652 11
Q ss_pred ----------------------hhHHHHHHHHHHHHhhhhhh-hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 138 ----------------------SSFLFMGRLLEGFGVGVISY-TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 138 ----------------------~~~~~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
.|...+...+.=+-...... .-+.+.+|.+..++-.+..++++.+.+++..++..+.
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 02222222222232233333 5678899999999999999999999999999888777
Q ss_pred ccc
Q 019729 195 LFV 197 (336)
Q Consensus 195 ~~~ 197 (336)
..+
T Consensus 205 ~~~ 207 (509)
T COG3202 205 SWL 207 (509)
T ss_pred HHH
Confidence 655
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.16 Score=46.90 Aligned_cols=127 Identities=9% Similarity=-0.020 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH-HHh----h---cchhHHHHHHHHHHHHhhhhhhhHhHHHH
Q 019729 93 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLI-ISF----S---KDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (336)
Q Consensus 93 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~~----~---~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 164 (336)
...+..++..+....+..|+..|.=+..++++..+..++ ..+ . ..++..++.-++.|++.+........+.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 444445555555556666666433233343322222211 111 1 13455566677888888888888877776
Q ss_pred hccCCCcchhHHhHHHHHHHHHHHHHHHhh-------cc---chhH--HHHHHhHHHHHHHHHHhhcccCch
Q 019729 165 EIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-------LF---VNWR--VLAVLGVLPCTLLIPGLFFIPESP 224 (336)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-------~~---~~w~--~~~~~~~~~~~~~~~~~~~~~e~~ 224 (336)
.+|++. ++.+..+.+++++++..+. .- ..++ ..|.+..++.+++++....++..|
T Consensus 133 -~fp~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~ 199 (437)
T TIGR00939 133 -VFPSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFGTPCVVQLICIVCYLLLPKLP 199 (437)
T ss_pred -cCCHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCH
Confidence 566543 3333444444443333222 11 2122 344445555666666666667666
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.4 Score=43.23 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc-----hhHHHHHHhHHHHHH
Q 019729 138 SSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-----NWRVLAVLGVLPCTL 212 (336)
Q Consensus 138 ~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~w~~~~~~~~~~~~~ 212 (336)
+...++.-.+.|++.|..........++ +|++.-...++-.+.++.+-+.+.-..-... +=...|.+..+..++
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~ll 195 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLL 195 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHH
Confidence 4555666777888887777777776664 5555444433333322222222111111111 222456666666777
Q ss_pred HHHHhhcccCch
Q 019729 213 LIPGLFFIPESP 224 (336)
Q Consensus 213 ~~~~~~~~~e~~ 224 (336)
+++++..+|..|
T Consensus 196 C~i~y~~l~~lp 207 (406)
T KOG1479|consen 196 CFVLYLVLPKLP 207 (406)
T ss_pred HHHHHHHhhcch
Confidence 777766777776
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.18 Score=46.60 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHH--HHHHHHHHHHHhh---------cchhHHHHHHHHHHHHhhh
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAA--VPNIIGWLIISFS---------KDSSFLFMGRLLEGFGVGV 154 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~--~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~g~ 154 (336)
-....+++++-.+|..+..+.. .-++| ++++.+. ++..-..++|..- ++-+..++.-++.|+..|-
T Consensus 310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 4566777777777777554321 11222 3333222 2222222333322 3556677789999999999
Q ss_pred hhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 155 ISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
..+....+..+..++++|..+..+...+..+|..+|..++
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888888887764
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.48 Score=43.03 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH--HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM--IAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIA 164 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 164 (336)
-|.+.++..+.+.++.+..|++..++.+-.-+. ...++.+...++++..++.+..+++-++.+.......++...-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888889999999999999977777644444 344555666777888899999988888888877777777777777
Q ss_pred hccCCCcchhHHhHHH
Q 019729 165 EIAPQNMRGSLGSVNQ 180 (336)
Q Consensus 165 ~~~~~~~r~~~~~~~~ 180 (336)
.....+.-+...|+..
T Consensus 367 ~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 367 KNLSEERYALVFGINT 382 (412)
T ss_pred HhccccceeeeeeeHH
Confidence 7776666666665544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.042 Score=50.77 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=50.9
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHH
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCT 211 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~ 211 (336)
++.|.+.-.......++-+|...+++++...++++.....+.+++|.+.... |.|+...+.+...+
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l 465 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLL 465 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHH
Confidence 4556666556667788899999999999999999999999999999888554 66666665444433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.0067 Score=57.43 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred cccccchhhHh-HhhhccCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHH---h--h
Q 019729 65 TCGYSSPTQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLIIS---F--S 135 (336)
Q Consensus 65 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~--~ 135 (336)
....+....|. ++.+|+.++++++.+..+..+ +.++|.+++|++..|+. .|..+.+..+...++.+... + .
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C 399 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC 399 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence 33334444554 566799999999888766655 77899999999999984 45555555444444433311 0 0
Q ss_pred c---------c----------------------------------------hhHHHHHHHHHHHHhhhhhhhHhHHHHhc
Q 019729 136 K---------D----------------------------------------SSFLFMGRLLEGFGVGVISYTVPVYIAEI 166 (336)
Q Consensus 136 ~---------~----------------------------------------~~~~~~~r~l~G~~~g~~~~~~~~~~~~~ 166 (336)
+ . ...+++..++.-+..+.........+-+.
T Consensus 400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~ 479 (539)
T PF03137_consen 400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC 479 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence 0 0 11233333333344444455555555667
Q ss_pred cCCCcchhHHhHHHHH-HHHHHHHHHHhhccc
Q 019729 167 APQNMRGSLGSVNQLS-VTIGIMLAYLLGLFV 197 (336)
Q Consensus 167 ~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~ 197 (336)
.|+++|+.++|+.... ..+|.+-+|++-+.+
T Consensus 480 V~~~~rs~AlGv~~~~~rllg~IPgPIifG~i 511 (539)
T PF03137_consen 480 VPPEQRSFALGVQWLIIRLLGFIPGPIIFGAI 511 (539)
T ss_dssp --------------------------------
T ss_pred CChhhcchhhhHHHHHHHhhcCcchHHHHhHH
Confidence 7777888887775433 445666666665443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.069 Score=51.88 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=46.6
Q ss_pred hhHh-HhhhccCCchhHHHHHHHHHH-HHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHH
Q 019729 72 TQAE-IISDLKLTISEFSIFGSLANV-GAMVGAIASGQIAEYIG--RKGSLMIAAVPNIIGWLI 131 (336)
Q Consensus 72 ~~~~-~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~ 131 (336)
.+|. +++.+|+++.+++++.+...+ +.+++.+++|+++||++ .|+.+.++.++..++.++
T Consensus 352 ~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 352 FLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 4444 456799999999999887766 67899999999999998 567777777666666544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.28 Score=42.78 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccC
Q 019729 95 NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAP 168 (336)
Q Consensus 95 ~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~ 168 (336)
.+.....+.+.+.+..++|-|+++.++...+..... .-+-+.+..++....+.|++.+..+..-.+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 344556677777999999999999988877754322 1223567788888999999999888887777776653
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.87 Score=41.14 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=74.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhhchhHHHHHHH-HHHHHHHHHHHh-------hcchhHHHHHHHHHHHHhhhhhh
Q 019729 87 FSIFGSL-ANVGAMVGAIASGQIAEYIGRKGSLMIAA-VPNIIGWLIISF-------SKDSSFLFMGRLLEGFGVGVISY 157 (336)
Q Consensus 87 ~~~~~~~-~~~~~~~~~~~~g~l~dr~Grr~~l~~~~-~~~~~~~~~~~~-------~~~~~~~~~~r~l~G~~~g~~~~ 157 (336)
...+... +++...+|.+.+.++-++= ||+..+... =...+..+.+.. -.+-+++++.-.+.|+..|-...
T Consensus 284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts 362 (406)
T KOG1479|consen 284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS 362 (406)
T ss_pred HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence 3445555 8888888877777766553 444333332 222233332221 34567788899999999999999
Q ss_pred hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
....+..+-.|++++..+..+.......|...|..++
T Consensus 363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998888888888888777776654
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.053 Score=47.66 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHH--HHHHHHHHHHH----------hhcchhHHHHHHHHHHHHhhhhh
Q 019729 90 FGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAA--VPNIIGWLIIS----------FSKDSSFLFMGRLLEGFGVGVIS 156 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~--~~~~~~~~~~~----------~~~~~~~~~~~r~l~G~~~g~~~ 156 (336)
...+++++-.+|..+.++..-+ -.+|+..+.+. ++..-..++|. +.++-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4567888888888887764321 13454444322 22222222221 12344667778899999999999
Q ss_pred hhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhh
Q 019729 157 YTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG 194 (336)
Q Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 194 (336)
+....+..+..++++|..+..+...+..+|..+|..++
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888887777665
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.32 Score=42.04 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH---HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIAEYIGRKGS---LMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVY 162 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 162 (336)
+.-|....+.+|-.+..--.-..--+ .-+. +.+-..++.+.-.+..+.++++..++.-+.-|+-.|..+.-..--
T Consensus 289 qYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~ 366 (409)
T KOG3880|consen 289 QYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHN 366 (409)
T ss_pred cchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 46788888777654432211111000 1111 122223333444455567888888888899999888888888777
Q ss_pred HHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc
Q 019729 163 IAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV 197 (336)
Q Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (336)
+.+-.++++|-.+++....+-.+|..++..++-.+
T Consensus 367 i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 367 IHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 88878889999999999999999999998887555
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=89.52 E-value=6.7 Score=36.69 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHh
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGR--KGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~ 165 (336)
|.+-++..+.+.+.++..|++-.++.+ ...+.+..++.+...++++.++|.+..+++.++.+.......++...-++.
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888899999999777754 234445556666677788889999999999999999998999999999998
Q ss_pred ccCCCcchhHHhHHHHHH
Q 019729 166 IAPQNMRGSLGSVNQLSV 183 (336)
Q Consensus 166 ~~~~~~r~~~~~~~~~~~ 183 (336)
....+.-|...|+.+...
T Consensus 381 ~L~~~~~aLvFGiNtfvA 398 (511)
T TIGR00806 381 SLSKELCALVFGINTFVA 398 (511)
T ss_pred HhcccceEEEEecHHHHH
Confidence 888777788888765443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.8 Score=30.78 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 019729 91 GSLANVGAMVGAIASGQIAEYI 112 (336)
Q Consensus 91 ~~~~~~~~~~~~~~~g~l~dr~ 112 (336)
.+.-+++..+.....||+.|||
T Consensus 48 lssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566667777889999997
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.81 E-value=8.1 Score=34.40 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhH--HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHh
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGRKG--SLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~ 165 (336)
|..-++..+.++++.+..|++.-++.|.. .+.++.+..+...++++.+++.|..+++.++.+.......++...-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 56667778888899999999988877653 4445556666677778888898888888888888777888888888888
Q ss_pred ccCCCcchhHHhHHHHH
Q 019729 166 IAPQNMRGSLGSVNQLS 182 (336)
Q Consensus 166 ~~~~~~r~~~~~~~~~~ 182 (336)
....+.-|...|+....
T Consensus 354 nL~~e~~gLvFGiNTFv 370 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFV 370 (433)
T ss_pred hhhhhhheeeeehHHHH
Confidence 88877778877775543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.64 Score=42.48 Aligned_cols=78 Identities=6% Similarity=-0.073 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHh
Q 019729 88 SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAE 165 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~ 165 (336)
.|=..++.+...+.+...-++++|+|-|+.+..+...+.++..+.+..++.......+...|+-.+....+.+..+++
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~ 412 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALAL 412 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence 455677777888999999999999997776666666666777677777777777777777775554444444444443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.22 E-value=19 Score=31.03 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchh--HHHHHHHHHHHHHHHHHHh----hc---chhHHHHHHHHHHHHhhhhhh
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRK--GSLMIAAVPNIIGWLIISF----SK---DSSFLFMGRLLEGFGVGVISY 157 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---~~~~~~~~r~l~G~~~g~~~~ 157 (336)
-|.+.+.+.++..+|+-+...+..|-..| ..+.+...+.++...+... ++ +...-+++.++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 47788888888889888888777765443 2333443333333322222 22 122335556666778899999
Q ss_pred hHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHH----HhhccchhHHHHHHhHHHHHHHHH
Q 019729 158 TVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY----LLGLFVNWRVLAVLGVLPCTLLIP 215 (336)
Q Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~ 215 (336)
....+-+++.|.+.|+..+.++-.-..+-.-++- .-+...+-|..|-++.++..+..+
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHH
Confidence 9999999999999999988876543332222111 111223677888888777665533
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.65 E-value=2.5 Score=41.38 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=41.9
Q ss_pred hhHh-HhhhccCCchhHHHHHHHH-HHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHH
Q 019729 72 TQAE-IISDLKLTISEFSIFGSLA-NVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNIIGWLI 131 (336)
Q Consensus 72 ~~~~-~~~~~g~s~~~~~~~~~~~-~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~~~~~~ 131 (336)
.+|. +.++||.+.+.+..+.... ..+.++|.+++|++..|+ +.|....+.++...+..+.
T Consensus 414 FlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 414 FLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred hhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 4444 5678999999998887544 446678999999999987 4566655555555444443
|
|
| >COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.90 E-value=28 Score=30.25 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHH
Q 019729 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEY---IGRKGSLMIAAV 123 (336)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~Grr~~l~~~~~ 123 (336)
++....+.+.++++..-+..+..+..+..+.+..+...+..++..+.. ...++..-.++ ||.||.=+++.+
T Consensus 22 r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~------A~~~a~r~~~~~~TfGy~R~eiLaa~ 95 (296)
T COG1230 22 RRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALI------AIKLARRPATKRFTFGYKRLEILAAF 95 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHH------HHHHhcCCCCCCCCccHhHHHHHHHH
Confidence 334444444444444444445555555667777776666555544442 22223333333 787777676666
Q ss_pred HHHHHHHHHHhh---------------cchhHHHHHHHHHHHHhhhhhhhHhHHHHhcc--CCCcchhHHhH-HHHHHHH
Q 019729 124 PNIIGWLIISFS---------------KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIA--PQNMRGSLGSV-NQLSVTI 185 (336)
Q Consensus 124 ~~~~~~~~~~~~---------------~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~--~~~~r~~~~~~-~~~~~~~ 185 (336)
..++..+..++. ++..++ .-.+.|+... ..... .+.+-- ..+.|+...-. -...+++
T Consensus 96 ~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml--~va~~GL~vN--~~~a~-ll~~~~~~~lN~r~a~LHvl~D~Lgsv 170 (296)
T COG1230 96 LNALLLIVVSLLILWEAIQRLLAPPPIHYSGML--VVAIIGLVVN--LVSAL-LLHKGHEENLNMRGAYLHVLGDALGSV 170 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccchH--HHHHHHHHHH--HHHHH-HhhCCCcccchHHHHHHHHHHHHHHHH
Confidence 666555544431 111222 2223333221 11111 111110 13445554443 5577888
Q ss_pred HHHHHHHhhccchhHHH
Q 019729 186 GIMLAYLLGLFVNWRVL 202 (336)
Q Consensus 186 g~~~~~~~~~~~~w~~~ 202 (336)
|.+++..+..+.+|.|.
T Consensus 171 ~vIia~i~i~~~~w~~~ 187 (296)
T COG1230 171 GVIIAAIVIRFTGWSWL 187 (296)
T ss_pred HHHHHHHHHHHhCCCcc
Confidence 88888888888888874
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=82.47 E-value=25 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHhhccchh
Q 019729 175 LGSVNQLSVTIGIMLAYLLGLFVNW 199 (336)
Q Consensus 175 ~~~~~~~~~~~g~~~~~~~~~~~~w 199 (336)
.....-.++.+|.+++..+....+.
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~ 191 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF 191 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444556666777777777666664
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=81.85 E-value=2 Score=36.29 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CcchhHHhHHHHHHHHHHHHH--HHhhc-----cc--hhHHHHHHhHHHHHHHHHHhhcc
Q 019729 170 NMRGSLGSVNQLSVTIGIMLA--YLLGL-----FV--NWRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 170 ~~r~~~~~~~~~~~~~g~~~~--~~~~~-----~~--~w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
|+|+........+.++|.++. |.+.. .+ +|++.+.+.+++.++.++....+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777778887765 33332 11 79999988887777666655443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=30 Score=30.95 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=55.5
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH-----HHHHHhh----cchhHHHHHHHHHHHH
Q 019729 81 KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG-----WLIISFS----KDSSFLFMGRLLEGFG 151 (336)
Q Consensus 81 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~-----~~~~~~~----~~~~~~~~~r~l~G~~ 151 (336)
|-..-+.+.+.+.+.....+|+...-++.|.--.-+.+.+-+++..++ .+-..|+ ++-+.+++..+++|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 545567888999999999999988887777543332222222221111 1111222 3556778888999999
Q ss_pred hhhhhhhHhHHHHh
Q 019729 152 VGVISYTVPVYIAE 165 (336)
Q Consensus 152 ~g~~~~~~~~~~~~ 165 (336)
.|.-.|....++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999998888776
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=81.02 E-value=14 Score=27.02 Aligned_cols=42 Identities=14% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 019729 87 FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIG 128 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~ 128 (336)
.+.......++..++..+.+.+.|..|.+..+.+......++
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 456666777777888888888888877766655544444333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=80.94 E-value=3.8 Score=27.53 Aligned_cols=39 Identities=5% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHhhchHHHHHhHHHHHHhcCCCCcchhHHHHHHHHhh
Q 019729 293 LQQLSGINGVLFYSSNIFANAGKINISLDVILPIVEALN 331 (336)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~g 331 (336)
+..+.+...+.-|.|.++++.|+++.+.+.+.++..++.
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~ 48 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIR 48 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHH
Confidence 334444567778899999999999999999988776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 336 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 3e-22 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 336 | |||
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 3e-04 |
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 6/180 (3%)
Query: 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASG 106
+ F L V + + + + F ++ + +
Sbjct: 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAP 280
Query: 107 QIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEI 166
I IG K +L++A + + SF+ + + + + L F V + YI
Sbjct: 281 LIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340
Query: 167 APQNMRGSLGSV-----NQLSVTIGIMLA-YLLGLFVNWRVLAVLGVLPCTLLIPGLFFI 220
++ V QL++ +LA + VLG++ + +F +
Sbjct: 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.92 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.87 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.75 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.62 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.61 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.54 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.51 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.48 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.4 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.07 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.96 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=242.78 Aligned_cols=273 Identities=30% Similarity=0.439 Sum_probs=218.0
Q ss_pred CChhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccC--------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 019729 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (336)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr 115 (336)
+++..+.+.++++++.+..|++.+.++..+|.+.++++. +....+++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677788888899999999999999999988877643 234578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHh
Q 019729 116 GSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177 (336)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 177 (336)
++++++.+++.++.++++ +++++++++++|+++|++.|+..+..+.+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc------------hhHHHHHHhHHHHHHHHHHhhcccCchhHHHHcCChHHHHHHHHHHhC
Q 019729 178 VNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 245 (336)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~~------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 245 (336)
+.+.+..+|.++++.++... .||+.+.+..+..++.++..+++||||+|+..+++.+++.+.+++.+.
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999888876432 588888888888888888889999999999999999999998887765
Q ss_pred CChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhcCCCCcchhH
Q 019729 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGKINISLDV 322 (336)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 322 (336)
++...++.. +.++..++ .++....... ...++..+......+.++.+.+.+.+|.+.+.+..+.+......
T Consensus 246 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (491)
T 4gc0_A 246 NTLATQAVQ-EIKHSLDH--GRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALL 316 (491)
T ss_dssp HHHHHHHHH-HHHHHHHH--HHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred CchhHHHHH-HHHHHHHh--hhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhh
Confidence 432221111 11111111 1111111112 22345566677778888889999999999999988877655433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=210.77 Aligned_cols=245 Identities=11% Similarity=0.090 Sum_probs=191.7
Q ss_pred HHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 019729 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (336)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 129 (336)
.....+++..+..++......+..|.+.+++|++..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34444555566667777788889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccch--------
Q 019729 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------- 198 (336)
Q Consensus 130 ~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------- 198 (336)
+++ +++++++.+++.|++.|++.+...+...++++|++|+++|+++.++.+.+..+|.++++.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 888999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ----------------------hHHHHHHhHHHHHHHHHHhhc--ccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHH
Q 019729 199 ----------------------WRVLAVLGVLPCTLLIPGLFF--IPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (336)
Q Consensus 199 ----------------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (336)
||+.|++.++..++..+..++ .||+++. ++ +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---------------~------- 240 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH---------------S------- 240 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC---------------C-------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc---------------c-------
Confidence 999998777665555443333 4554320 00 0
Q ss_pred HHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHHHHHHHHhhchHHHHHhHHHH-HHhc-CCCCcchhHHHHHHHHh
Q 019729 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GKINISLDVILPIVEAL 330 (336)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~~~~~~~~~~~ 330 (336)
++++++.+..++++++++..+...+...+... ....+..|.|.+ +++. |++..+++.+.++..+.
T Consensus 241 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 307 (438)
T 3o7q_A 241 -------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVC 307 (438)
T ss_dssp -------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred -------cccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHH
Confidence 00112233456677777665555444333332 345677888888 8887 99988888776655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=212.78 Aligned_cols=265 Identities=12% Similarity=0.052 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
+..+......+++.+..++......+..|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 34455666666777777788888888999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----
Q 019729 126 IIGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (336)
Q Consensus 126 ~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---- 197 (336)
+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999999999999999999999988654
Q ss_pred h-hHHHHHHhHHHHHHHH-HHhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHH
Q 019729 198 N-WRVLAVLGVLPCTLLI-PGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (336)
Q Consensus 198 ~-w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (336)
+ ||+.|++.+++.++.. +.++++||+|+....++..+. .. +... +.++..++.....+...++.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~---~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KN-DYPD---DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CC-C----------------CCTHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cc-cccc---cchhhhhcccccccchHHHH
Confidence 7 9999999888776654 445678888753211111000 00 0000 00000000111111223455
Q ss_pred hcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHHH
Q 019729 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVEA 329 (336)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~ 329 (336)
++++..+... +..+....+.+.+..|.|.++++ .|+++.+++.+.+...+
T Consensus 249 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 249 LPNKLLWYIA----IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 299 (451)
T ss_dssp SSCHHHHHHH----HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred HcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554433332 23333333456788889999988 59998888777655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=197.52 Aligned_cols=235 Identities=14% Similarity=0.195 Sum_probs=185.2
Q ss_pred HHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHh
Q 019729 55 VALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISF 134 (336)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 134 (336)
+++..+..++......+..|.+.+++|.+..+.+++.++..++..+++++.|+++||+|||+++.++.++.+++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34445555667777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHH
Q 019729 135 SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPC 210 (336)
Q Consensus 135 ~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~ 210 (336)
+++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+ +||+.+++.++..
T Consensus 85 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 85 TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765 8999999888877
Q ss_pred HHHHH-HhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHHhcccchHHHHHHHH
Q 019729 211 TLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIG 289 (336)
Q Consensus 211 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (336)
++..+ ..+++||+++.. ++ +++....+++.++++..+...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~- 208 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVD---AP--------------------------------RTRLLTSYKTLFGNSGFNCYLLML- 208 (375)
T ss_dssp HHHHCCCCCSSCCCSTTT---CC--------------------------------CCCTTTCSTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCcccCCCC---cc--------------------------------cccHHHHHHHHhcCcchHHHHHHH-
Confidence 77665 556678875410 00 001122334455554433333332
Q ss_pred HHHHHHhhchHHHHHhHHHHHHh-cCCCCcchhHHHHHHH
Q 019729 290 LLVLQQLSGINGVLFYSSNIFAN-AGKINISLDVILPIVE 328 (336)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 328 (336)
+....+.+.+..+.|.++++ .|.++.+++.+.+...
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 245 (375)
T 2gfp_A 209 ---IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPI 245 (375)
T ss_dssp ---HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 22333345677777888776 5888777776655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=172.22 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=128.0
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhh
Q 019729 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (336)
Q Consensus 80 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 158 (336)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhccCCCc--chhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 159 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
..++++|++|+++ |+.+.++++.+..+|..++|.+++.+ +||+.|++.++..++..+..+
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 77788889999999999999988765 899999998777666655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=153.72 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=131.2
Q ss_pred HhHhhhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHhhc-chhHHHHHH
Q 019729 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (336)
Q Consensus 74 ~~~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r 145 (336)
+.+.+++| ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34667889 9999999999999999999999999999999 999999999999999999999998 999999999
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhH---HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhh
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLF 218 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~ 218 (336)
++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|.+++|.+++.+ +||+.|++.+++.++..+..+
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 8889999999999988755 899999998877766655444
Q ss_pred c
Q 019729 219 F 219 (336)
Q Consensus 219 ~ 219 (336)
+
T Consensus 197 ~ 197 (524)
T 2xut_A 197 L 197 (524)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=132.04 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=127.5
Q ss_pred cchhhHhHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhhc--chhHHH
Q 019729 69 SSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFSK--DSSFLF 142 (336)
Q Consensus 69 ~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~~--~~~~~~ 142 (336)
.....|.+.++ +|.+..+.+++.++..++..++.++.|++.||+ |||+.+.++..+.. ++.++..+.+ +.+.+.
T Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T 1pw4_A 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350 (451)
T ss_dssp HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 33455656555 899999999999999999999999999999999 99999888877766 6666666653 667777
Q ss_pred HHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH-HHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHh
Q 019729 143 MGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (336)
Q Consensus 143 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~ 217 (336)
+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..+..
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 8888999998888999999999999999999999999999999 999999888665 78999998888777776655
Q ss_pred hcc
Q 019729 218 FFI 220 (336)
Q Consensus 218 ~~~ 220 (336)
+++
T Consensus 431 ~~~ 433 (451)
T 1pw4_A 431 IVV 433 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-17 Score=146.02 Aligned_cols=153 Identities=13% Similarity=0.083 Sum_probs=101.8
Q ss_pred chhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH---HHHHhhcch-hHHHHH
Q 019729 70 SPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFLFMG 144 (336)
Q Consensus 70 ~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~ 144 (336)
.+.+|. +++++|++..+.+++.++..++..++++++|+++||+|||++++++..+.+++. +...+.+.. ..++..
T Consensus 27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (417)
T 2cfq_A 27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVG 106 (417)
T ss_dssp TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 456689999999999999999999999999999999999999998887765432 111222211 112334
Q ss_pred HHHHHHHhhhhhhhHhHHHHhccCC--CcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHHHHHhhc
Q 019729 145 RLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 145 r~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
+.+.|++.|..++.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..++..+..++
T Consensus 107 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 107 SIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444444432 3556666776666777777888777655 7999998877765555555444
Q ss_pred ccC
Q 019729 220 IPE 222 (336)
Q Consensus 220 ~~e 222 (336)
.+|
T Consensus 187 ~~~ 189 (417)
T 2cfq_A 187 AKT 189 (417)
T ss_dssp SCC
T ss_pred cCc
Confidence 443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=133.60 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=112.2
Q ss_pred cchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhc----chhHHHHH
Q 019729 69 SSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSK----DSSFLFMG 144 (336)
Q Consensus 69 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~ 144 (336)
.....+.+.+..+.+.........+..+...++.++.+++.||+|||+.++.+....+++.+..+... +....++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 375 (491)
T 4gc0_A 296 VLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 375 (491)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 33455667778888887777888888899999999999999999999999999888887776655421 11222222
Q ss_pred HHH-HHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----------hhHHHHHHhHHHHHHH
Q 019729 145 RLL-EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 145 r~l-~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----------~w~~~~~~~~~~~~~~ 213 (336)
-++ .+....+..++.+.+.+|.+|++.|+++.|+......+|.++++.+...+ ++.+.|++.++++++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 222 22222344567789999999999999999999988888888776654322 3345666666666666
Q ss_pred HH-HhhcccCch
Q 019729 214 IP-GLFFIPESP 224 (336)
Q Consensus 214 ~~-~~~~~~e~~ 224 (336)
.+ .++++|||+
T Consensus 456 ~i~~~~~~PETk 467 (491)
T 4gc0_A 456 ALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHCCCCT
T ss_pred HHHHHheecCCC
Confidence 44 567899995
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=124.92 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=116.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhHhHHH
Q 019729 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (336)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~ 163 (336)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888999999999999999999999998888888877777777877787888888888777777788999
Q ss_pred HhccCCCcchhHHhH-HHHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-hhcccCch
Q 019729 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (336)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 224 (336)
+|.+|++.|+++.++ ++....+|.+++|.+++.+ +++..|.+.+++++++.+. +...||++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999998 5778888988898888755 6778888888777776554 44566654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=118.50 Aligned_cols=147 Identities=13% Similarity=-0.043 Sum_probs=117.7
Q ss_pred hhhHhH-h-hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 019729 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (336)
Q Consensus 71 ~~~~~~-~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 148 (336)
...|.+ . +.+|.+..+.+++.++..++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.++. -++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence 344444 4 445999999999999999999999999999999999999999999999999888888877765444 4888
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----h-hHHHHHHhHHHHHHHHHHhhcc
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFFI 220 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~-w~~~~~~~~~~~~~~~~~~~~~ 220 (336)
|++.+..++...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.+++.++.++..++.
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 888888766 4558888888887665 6 8878877666555544443333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=120.18 Aligned_cols=151 Identities=16% Similarity=0.053 Sum_probs=115.3
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-----HHHHHHHHHHHHHHhhc---------
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK--------- 136 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~--------- 136 (336)
..+.+ .+.++.+..+.+++.+...++..++.++.+++.||+|||+... .+.++.+++.++..+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4aps_A 305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV 384 (491)
T ss_dssp HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 33434 4446766567788888888999999999999999999987655 66777777766665532
Q ss_pred chhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhHHHHHHH
Q 019729 137 DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLL 213 (336)
Q Consensus 137 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~~~~~~~ 213 (336)
+.+.+++.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+ ++.+.|++.+++.++.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6677778889999999998999999999999999999999999999999999999998776 5566777777666665
Q ss_pred HHHh-hcccC
Q 019729 214 IPGL-FFIPE 222 (336)
Q Consensus 214 ~~~~-~~~~e 222 (336)
.+.. ++.++
T Consensus 465 ~~~~~~~~~~ 474 (491)
T 4aps_A 465 GIVLVFLSKR 474 (491)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHH
Confidence 4443 34443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.2e-11 Score=105.13 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=100.2
Q ss_pred hhHhH-hhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH-HHHHHH--HHHh--hcchhHHHHHH
Q 019729 72 TQAEI-ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMGR 145 (336)
Q Consensus 72 ~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r 145 (336)
..|.+ ++.+|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA 298 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence 33444 4448999999999999999999999999999999999833 223222 222222 2222 23566677788
Q ss_pred HHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----hhHHHHHH
Q 019729 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (336)
Q Consensus 146 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~w~~~~~~ 205 (336)
++.|++.+...+....++.|.+| ++|+++.++.+....+|..++|.+.+.+ +|+..+++
T Consensus 299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 89999999999999999999998 8999999999999999999998888766 45555544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=99.38 Aligned_cols=133 Identities=18% Similarity=0.145 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----hhhch----hHHHHHHHHHHHHHHHHHHhh---------cchhHHHHHHHHH
Q 019729 86 EFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS---------KDSSFLFMGRLLE 148 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~ 148 (336)
..+++.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 356666666677777777766654 55543 346667777777777766653 3566777888999
Q ss_pred HHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc------hh---------HHHHHHhHHHHHHH
Q 019729 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW---------RVLAVLGVLPCTLL 213 (336)
Q Consensus 149 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~------~w---------~~~~~~~~~~~~~~ 213 (336)
|++.+...+....++.|.+|+++|++++|+.+....+|..++|.+.+.+ +| +..|++.+.+.++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988665 24 33356666655555
Q ss_pred HHHhh
Q 019729 214 IPGLF 218 (336)
Q Consensus 214 ~~~~~ 218 (336)
.+..+
T Consensus 496 ~~~~~ 500 (524)
T 2xut_A 496 AIVFA 500 (524)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 336 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 25/217 (11%), Positives = 63/217 (29%), Gaps = 7/217 (3%)
Query: 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRK----GSLMIAAVPNIIGWLI 131
+ + + + S ++ G +++ + L++AA + +
Sbjct: 50 YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 109
Query: 132 ISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAY 191
+ + +F+ L G+ G+ + Q RG + SV + +G +
Sbjct: 110 PWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169
Query: 192 LLGLF---VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRGFDT 248
LL L A L + ++ LF G+ E ++
Sbjct: 170 LLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 229
Query: 249 DISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLM 285
E+ + + + + + +
Sbjct: 230 KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 266
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 336 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.65 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.61 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.52 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.5e-27 Score=211.65 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=187.1
Q ss_pred hhhHHHHHHHHHhhhhhhccccccchhhHhHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 019729 46 VSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPN 125 (336)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 125 (336)
+.+|.+...+.++++..+++...++...|.++ |+|+|.++.+++.+++.+++.++++++|+++||+|||+++.++.++.
T Consensus 21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 99 (447)
T d1pw4a_ 21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 99 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 45667777777777777777777777777665 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----cchhHHHHHHHHHHHHhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHHHHHHHHHhhccc----
Q 019729 126 IIGWLIISFS----KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---- 197 (336)
Q Consensus 126 ~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~---- 197 (336)
+++.++++++ ++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+..+|..+++.++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 100 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh
Confidence 9999988875 47789999999999999999999999999999999999999999999999999888776543
Q ss_pred -hhHHHHHHhHHHHHHHHH-HhhcccCchhHHHHcCChHHHHHHHHHHhCCChhhHHHHHHHHHHhhhhchhhhhhHHHH
Q 019729 198 -NWRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAEL 275 (336)
Q Consensus 198 -~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (336)
+||+.+++.+++.++..+ .+++.+++|+........+. ..+..++..+..+++....+...+..
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------KNDYPDDYNEKAEQELTAKQIFMQYV 245 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------CCC-------------CCTHHHHHHT
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------hhhcccchhhccccccchhhHHHHHH
Confidence 799998887777666544 44556666542211110000 00000000111111111222334445
Q ss_pred hcccchHHHHHHHHHHHHHHhhchHHHHHhHHHHHHhc-CCCCcchhHHHHHHHH
Q 019729 276 KRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANA-GKINISLDVILPIVEA 329 (336)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~ 329 (336)
++++..+ ......+......+....|.|.++.+. +.+..+.+...++..+
T Consensus 246 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 246 LPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296 (447)
T ss_dssp SSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred HcCchHH----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence 5543322 222333333334567778888888766 8888777776655444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=2.1e-16 Score=139.45 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=110.6
Q ss_pred cccccchhhHh-HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHH--
Q 019729 65 TCGYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFL-- 141 (336)
Q Consensus 65 ~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-- 141 (336)
..+...+.+|. +++++|+|..+.|++.+++.++..++++++|+++||+|||++++++..+..++.++..+..+....
T Consensus 22 ~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T d1pv7a_ 22 IMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33445566665 567799999999999999999999999999999999999999999999998888888877655443
Q ss_pred --HHHHHHHHHHhhhhhhhHhHHHHhccCC--CcchhHHhHHHHHHHHHHHHHHHhhccc---hhHHHHHHhH-HHHHHH
Q 019729 142 --FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGV-LPCTLL 213 (336)
Q Consensus 142 --~~~r~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~---~w~~~~~~~~-~~~~~~ 213 (336)
++.+.+.+.+.+...........+..++ +++....+........+..+++.+++.+ +|+..+.... ...+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 181 (417)
T d1pv7a_ 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp TCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHH
Confidence 3344444444444444444444333332 3344556666777777777787777655 4555554444 444444
Q ss_pred HHHhhcccCchh
Q 019729 214 IPGLFFIPESPR 225 (336)
Q Consensus 214 ~~~~~~~~e~~~ 225 (336)
.+..+..+++++
T Consensus 182 ~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 182 VLLFFAKTDAPS 193 (417)
T ss_dssp HHHHSSCCCSCS
T ss_pred HHHHHHhccccc
Confidence 555666676653
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.6e-15 Score=132.32 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=123.5
Q ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhh
Q 019729 78 SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISY 157 (336)
Q Consensus 78 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 157 (336)
++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 33445566678888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHhccCCCcchhHHhHH-HHHHHHHHHHHHHhhccc----hhHHHHHHhHHHHHHHHHH-hhcccC
Q 019729 158 TVPVYIAEIAPQNMRGSLGSVN-QLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPE 222 (336)
Q Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~-~~~~~e 222 (336)
...+++.|.+|++.|++..++. +....+|.+++|.+.+.+ ||+..+++.+++.++..++ .+.+++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999974 566778888888887655 8899998887777666544 344443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.9e-13 Score=120.89 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=109.5
Q ss_pred HhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH---h--hcchhHHHHHHHHHHH
Q 019729 76 IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS---F--SKDSSFLFMGRLLEGF 150 (336)
Q Consensus 76 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~~~~~r~l~G~ 150 (336)
+.+.++.+..+.++..++..++..++.++.|+++||++||+..........+..+... . ..+.+..+++-++.|+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 355 (447)
T d1pw4a_ 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355 (447)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999999987654444333322222222 1 3456677777888899
Q ss_pred HhhhhhhhHhHHHHhccCCCcchhHHhHHHHHHHH-HHHHHHHhhccc----hhHHHHHHhHHHHHHHHHHhhc
Q 019729 151 GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFF 219 (336)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~ 219 (336)
+.+...+....++.|.+|++.|+++.|+.+....+ |.+++|.+.+.+ ||+..+++.+.+.++..++.++
T Consensus 356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999998877665 556677776554 8998888877776666554443
|