Citrus Sinensis ID: 019756

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------

MNTFGCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAGTFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQDSIITSFAGLR

cccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccc

ccEEHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccc

MNTFGCSLAYFFGNVIPWRILALIGVIPCVLQLIglffipesprwlVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFekagasgsigsrgiaIIQIPAVITSVLLmdkagrkplLMVITTSRTLfkmfdfvdqrgyengyQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGcsafnsiglagipfvimseifpinvkASAGSLVILICWSCSWIVTYTFNFMMqwssagtfFIFSGIGFFTVLFVAKIvpetkgrtlEEIQDSIITSFAGLR

MNTFGCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKagasgsigsrgiaiiQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWssagtffifsgigfftVLFVAKIVPETKGRTLEEIQDSIITSFAGLR

***FGCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQN*****************HIEI****SEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAGTFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQDSIIT******

MNTFGCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAA*******************LFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAGTFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQDSII*S*****

ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii

iiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii

ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		336	2.2.26 [Sep-21-2011]
Q3ECP7		470	Sugar transporter ERD6-li	yes	no	0.883	0.631	0.523	5e-92
P93051		463	Sugar transporter ERD6-li	no	no	0.872	0.632	0.461	4e-81
Q94CI7		474	Sugar transporter ERD6-li	no	no	0.883	0.626	0.467	6e-80
Q94AF9		467	Sugar transporter ERD6-li	no	no	0.872	0.627	0.449	2e-79
Q93Z80		458	Sugar transporter ERD6-li	no	no	0.880	0.646	0.444	2e-79
Q94CI6		478	Sugar transporter ERD6-li	no	no	0.883	0.621	0.436	2e-76
Q4F7G0		462	Sugar transporter ERD6-li	no	no	0.895	0.651	0.468	2e-75
Q8LBI9		482	Sugar transporter ERD6-li	no	no	0.892	0.622	0.458	4e-75
O04036		496	Sugar transporter ERD6 OS	no	no	0.883	0.598	0.427	1e-74
Q9SCW7		464	Sugar transporter ERD6-li	no	no	0.892	0.646	0.460	2e-73

>sp\|Q3ECP7\|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2	Back alignment and function desciption

 Score =  338 bits (866), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 170/325 (52%), Positives = 222/325 (68%), Gaps = 28/325 (8%)

Query: 4   FGCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLR 63
            G S+ Y  G+ I WRILALIG+IPCV+Q++GLF IPESPRWL K+GK +EFE  LQ LR
Sbjct: 169 LGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFEIALQRLR 228

Query: 64  GKGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAY 123
           G+ ADIS E+ EI+D+       SE  +++LFQ +YA SL++GVGLM+LQQFGG + +A+
Sbjct: 229 GESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGGVNGIAF 288

Query: 124 YTSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFV 183
           Y SSIFE AG S  IG   + ++QIP     VLLMDK+GR+PLL+               
Sbjct: 289 YASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLL--------------- 333

Query: 184 DQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIG 243
                        ISA G   GCFL+GLSF L+ VK ++  A  L L G +  +   S+G
Sbjct: 334 -------------ISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLG 380

Query: 244 LAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAGTFFIFSGIGF 303
           + GIP+VIMSEIFPI++K SAGSLV ++ W  SWI+++TFNF+M W+ AGTF++F+ +  
Sbjct: 381 MGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCG 440

Query: 304 FTVLFVAKIVPETKGRTLEEIQDSI 328
            TV+FVAK+VPETKGRTLEEIQ SI
Sbjct: 441 ATVIFVAKLVPETKGRTLEEIQYSI 465

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|P93051\|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2	Back alignment and function description

>sp\|Q94CI7\|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2	Back alignment and function description

>sp\|Q94AF9\|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2	Back alignment and function description

>sp\|Q93Z80\|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1	Back alignment and function description

>sp\|Q94CI6\|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1	Back alignment and function description

>sp\|Q4F7G0\|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1	Back alignment and function description

>sp\|Q8LBI9\|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2	Back alignment and function description

>sp\|O04036\|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3	Back alignment and function description

>sp\|Q9SCW7\|ERDL1_ARATH Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		336
298205029		474	unnamed protein product [Vitis vinifera]	0.883	0.626	0.56	3e-97
359487977		920	PREDICTED: sugar transporter ERD6-like 5	0.883	0.322	0.56	5e-97
298205028		476	unnamed protein product [Vitis vinifera]	0.880	0.621	0.564	8e-97
310877856		475	putative ERD6-like transporter [Vitis vi	0.883	0.625	0.558	7e-96
310877858		477	putative ERD6-like transporter [Vitis vi	0.880	0.620	0.563	2e-95
359487982		491	PREDICTED: sugar transporter ERD6-like 5	0.892	0.610	0.548	3e-95
298205032		488	unnamed protein product [Vitis vinifera]	0.892	0.614	0.548	3e-95
255542516		476	sugar transporter, putative [Ricinus com	0.880	0.621	0.555	6e-95
224130930		478	predicted protein [Populus trichocarpa]	0.892	0.627	0.545	4e-93
356504068		486	PREDICTED: sugar transporter ERD6-like 5	0.877	0.606	0.549	2e-92

>gi\|298205029\|emb\|CBI34336.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/325 (56%), Positives = 231/325 (71%), Gaps = 28/325 (8%)

Query: 5   GCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRG 64
           G SL +F G +I WRILALIG IPC+LQ+IGLFFIPESPRWL K+G+E++    L+ LRG
Sbjct: 177 GFSLTFFVGTIISWRILALIGAIPCILQVIGLFFIPESPRWLAKVGREEDLVAALRRLRG 236

Query: 65  KGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYY 124
             ADISQEAAEI+D+ E  Q  SEAR+L+L QRRYA+SLI+GVGLM+LQQFGG++A+AYY
Sbjct: 237 VNADISQEAAEIQDYTEAFQHLSEARILDLLQRRYAHSLIVGVGLMVLQQFGGSNAIAYY 296

Query: 125 TSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVD 184
            S+IFE A  S + G R +AI+QIP  + +V L+DK GR+PLLMV               
Sbjct: 297 ASAIFESADFSSTFGIRAMAILQIPVTLLAVFLIDKCGRRPLLMV--------------- 341

Query: 185 QRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGL 244
                        SA GM   C ++ LSF L+++    +   ILVL+G +  +A  S+G+
Sbjct: 342 -------------SAAGMCLSCLVVALSFLLQDLHQWKEITPILVLIGILAYTASFSMGV 388

Query: 245 AGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAGTFFIFSGIGFF 304
           AG+P+V+MSEIFPIN+K SAGSLV L  W CSWI TYTFNF+ +WSSAGTF +FS I   
Sbjct: 389 AGLPWVVMSEIFPINIKGSAGSLVTLSNWFCSWITTYTFNFVFEWSSAGTFLLFSIICGA 448

Query: 305 TVLFVAKIVPETKGRTLEEIQDSII 329
           TVLFVAK++PETKGR LEEIQ ++I
Sbjct: 449 TVLFVAKLLPETKGRRLEEIQATMI 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359487977\|ref\|XP_002263553.2\| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205028\|emb\|CBI34335.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|310877856\|gb\|ADP37159.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

>gi\|310877858\|gb\|ADP37160.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359487982\|ref\|XP_002263320.2\| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|298205032\|emb\|CBI34339.3\| unnamed protein product [Vitis vinifera] gi\|310877848\|gb\|ADP37155.1\| putative ERD6-like transporter [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255542516\|ref\|XP_002512321.1\| sugar transporter, putative [Ricinus communis] gi\|223548282\|gb\|EEF49773.1\| sugar transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224130930\|ref\|XP_002328411.1\| predicted protein [Populus trichocarpa] gi\|222838126\|gb\|EEE76491.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356504068\|ref\|XP_003520821.1\| PREDICTED: sugar transporter ERD6-like 5-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		336
TAIR\|locus:2199539		470	AT1G54730 [Arabidopsis thalian	0.5	0.357	0.535	2e-79
TAIR\|locus:2066400		463	AT2G48020 [Arabidopsis thalian	0.5	0.362	0.494	4.7e-72
TAIR\|locus:2096234		458	AT3G05160 [Arabidopsis thalian	0.488	0.358	0.463	4.2e-69
TAIR\|locus:505006329		467	AT3G05165 [Arabidopsis thalian	0.488	0.351	0.469	1.4e-68
TAIR\|locus:2036039		464	AT1G08890 [Arabidopsis thalian	0.5	0.362	0.470	2.3e-68
TAIR\|locus:2146350		474	SFP1 [Arabidopsis thaliana (ta	0.488	0.345	0.469	6e-68
TAIR\|locus:2036084		496	ERD6 "EARLY RESPONSE TO DEHYDR	0.5	0.338	0.476	6.1e-66
TAIR\|locus:2146365		478	SFP2 [Arabidopsis thaliana (ta	0.520	0.366	0.44	1.6e-65
TAIR\|locus:2144975		482	AT5G18840 "AT5G18840" [Arabido	0.502	0.350	0.423	1.1e-64
TAIR\|locus:2079802		462	AT3G05400 [Arabidopsis thalian	0.488	0.354	0.463	1.6e-61

TAIR\|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 464 (168.4 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
 Identities = 90/168 (53%), Positives = 116/168 (69%)

Query:     5 GCSLAYFFGNVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRG 64
             G S+ Y  G+ I WRILALIG+IPCV+Q++GLF IPESPRWL K+GK +EFE  LQ LRG
Sbjct:   170 GVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVIPESPRWLAKVGKWEEFEIALQRLRG 229

Query:    65 KGADISQEAAEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYY 124
             + ADIS E+ EI+D+       SE  +++LFQ +YA SL++GVGLM+LQQFGG + +A+Y
Sbjct:   230 ESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSLVVGVGLMVLQQFGGVNGIAFY 289

Query:   125 TSSIFEKXXXXXXXXXXXXXXXQIPAVITSVLLMDKAGRKPLLMVITT 172
              SSIFE                QIP     VLLMDK+GR+PLL++  T
Sbjct:   290 ASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGRRPLLLISAT 337

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR\|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ECP7	ERDL5_ARATH	No assigned EC number	0.5230	0.8839	0.6319	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006086001	SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (475 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		336
pfam00083		449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-47
TIGR00879		481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-42
PRK10077		479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-36
TIGR00898		505	TIGR00898, 2A0119, cation transport protein	3e-14
TIGR01299		742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-05
TIGR00895		398	TIGR00895, 2A0115, benzoate transport	0.003

>gnl\|CDD\|215702 pfam00083, Sugar_tr, Sugar (and other) transporter	Back alignment and domain information

 Score =  165 bits (420), Expect = 2e-47
 Identities = 105/332 (31%), Positives = 165/332 (49%), Gaps = 41/332 (12%)

Query: 3   TFGCSLAYFFG-------NVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEF 55
           TFG  +A   G       N   WRI   +  +P +L LIGL F+PESPRWLV  GK +E 
Sbjct: 147 TFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEA 206

Query: 56  ETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLFQRR-YANSLIIGVGLMLLQQ 114
              L  LRG  +D+ QE  E +D +E S +  +A  L LF+ +     L++GV L + QQ
Sbjct: 207 RAVLAKLRG-VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQ 265

Query: 115 FGGASAMAYYTSSIFEKAGASGS-IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTS 173
             G +A+ YY+ +IFE  G S S + +  + ++       ++ L+D+ GR+PLL+     
Sbjct: 266 LTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLL----- 320

Query: 174 RTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGF 233
                                  + A GMA    ++G++            A I+ +V  
Sbjct: 321 -----------------------LGAAGMAICFLVLGVALLGVAKS---KGAGIVAIVFI 354

Query: 234 MGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSSAG 293
           +   AF ++G   +P+VI+SE+FP+ V+  A ++     W  ++++ + F  +       
Sbjct: 355 LLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY 414

Query: 294 TFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQ 325
            F +F+G+    +LFV   VPETKGRTLEEI 
Sbjct: 415 VFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl\|CDD\|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family	Back alignment and domain information

>gnl\|CDD\|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional	Back alignment and domain information

>gnl\|CDD\|233176 TIGR00898, 2A0119, cation transport protein	Back alignment and domain information

>gnl\|CDD\|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2	Back alignment and domain information

>gnl\|CDD\|233175 TIGR00895, 2A0115, benzoate transport	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		336
KOG0569		485	consensus Permease of the major facilitator superf	100.0
KOG0254		513	consensus Predicted transporter (major facilitator	99.97
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.95
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.95
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	99.94
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.94
TIGR00898		505	2A0119 cation transport protein.	99.92
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK10642		490	proline/glycine betaine transporter; Provisional	99.85
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	99.82
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	99.81
PRK09952		438	shikimate transporter; Provisional	99.76
PRK10489		417	enterobactin exporter EntS; Provisional	99.75
PRK12307		426	putative sialic acid transporter; Provisional	99.73
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.73
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.72
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.71
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.71
PRK11663		434	regulatory protein UhpC; Provisional	99.71
TIGR00891		405	2A0112 putative sialic acid transporter.	99.69
PRK15075		434	citrate-proton symporter; Provisional	99.68
PRK03893		496	putative sialic acid transporter; Provisional	99.68
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.67
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.66
TIGR00895		398	2A0115 benzoate transport.	99.65
TIGR00893		399	2A0114 d-galactonate transporter.	99.65
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.65
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.64
PRK03545		390	putative arabinose transporter; Provisional	99.63
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.63
PRK09528		420	lacY galactoside permease; Reviewed	99.63
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.63
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.62
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.61
PRK05122		399	major facilitator superfamily transporter; Provisi	99.6
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.6
PRK09705		393	cynX putative cyanate transporter; Provisional	99.59
PRK12382		392	putative transporter; Provisional	99.57
PRK15011		393	sugar efflux transporter B; Provisional	99.57
PRK11010		491	ampG muropeptide transporter; Validated	99.56
PRK09874		408	drug efflux system protein MdtG; Provisional	99.54
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.54
PRK10091		382	MFS transport protein AraJ; Provisional	99.52
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.52
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.52
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.51
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.51
KOG2533		495	consensus Permease of the major facilitator superf	99.49
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.49
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.48
TIGR00895		398	2A0115 benzoate transport.	99.47
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.47
PRK11663		434	regulatory protein UhpC; Provisional	99.47
TIGR00900		365	2A0121 H+ Antiporter protein.	99.47
PRK11043		401	putative transporter; Provisional	99.46
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.46
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.46
PRK10054		395	putative transporter; Provisional	99.46
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.46
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.46
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.46
TIGR00893		399	2A0114 d-galactonate transporter.	99.45
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.45
PLN00028		476	nitrate transmembrane transporter; Provisional	99.45
PRK03545		390	putative arabinose transporter; Provisional	99.45
PRK10504		471	putative transporter; Provisional	99.45
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.44
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.44
PRK11902		402	ampG muropeptide transporter; Reviewed	99.44
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.44
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.43
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.43
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.43
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.42
TIGR00891		405	2A0112 putative sialic acid transporter.	99.42
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.41
PRK03699		394	putative transporter; Provisional	99.41
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.41
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.4
KOG2532		466	consensus Permease of the major facilitator superf	99.39
PRK12307		426	putative sialic acid transporter; Provisional	99.39
TIGR00901		356	2A0125 AmpG-related permease.	99.39
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.39
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.39
PLN00028		476	nitrate transmembrane transporter; Provisional	99.38
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.38
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.37
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.37
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.37
KOG1330		493	consensus Sugar transporter/spinster transmembrane	99.36
PRK10091		382	MFS transport protein AraJ; Provisional	99.36
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.36
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.36
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.35
PRK03633		381	putative MFS family transporter protein; Provision	99.35
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.35
PRK10504		471	putative transporter; Provisional	99.34
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.34
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.34
PRK03699		394	putative transporter; Provisional	99.33
PRK10489		417	enterobactin exporter EntS; Provisional	99.33
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.33
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.33
PRK10054		395	putative transporter; Provisional	99.33
PRK09874		408	drug efflux system protein MdtG; Provisional	99.32
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.32
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.32
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.31
PRK03893		496	putative sialic acid transporter; Provisional	99.31
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.31
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.31
TIGR00900		365	2A0121 H+ Antiporter protein.	99.31
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.3
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.29
PRK11043		401	putative transporter; Provisional	99.29
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.28
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.28
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	99.28
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.27
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.27
PRK05122		399	major facilitator superfamily transporter; Provisi	99.27
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.27
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.26
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.25
PRK15462		493	dipeptide/tripeptide permease D; Provisional	99.24
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.24
PRK10642		490	proline/glycine betaine transporter; Provisional	99.23
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	99.23
PRK15075		434	citrate-proton symporter; Provisional	99.23
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.23
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.22
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.22
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.21
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.21
PRK10207		489	dipeptide/tripeptide permease B; Provisional	99.2
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.2
PRK12382		392	putative transporter; Provisional	99.2
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.2
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.19
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	99.18
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	99.18
PRK09952		438	shikimate transporter; Provisional	99.17
TIGR00805		633	oat sodium-independent organic anion transporter.	99.17
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.16
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.15
PRK09584		500	tppB putative tripeptide transporter permease; Rev	99.15
PRK09705		393	cynX putative cyanate transporter; Provisional	99.15
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.14
PRK09669		444	putative symporter YagG; Provisional	99.14
PRK10133		438	L-fucose transporter; Provisional	99.13
TIGR00898		505	2A0119 cation transport protein.	99.13
PRK03633		381	putative MFS family transporter protein; Provision	99.11
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.11
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.1
PF13347		428	MFS_2: MFS/sugar transport protein	99.1
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.1
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.09
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.09
PTZ00207		591	hypothetical protein; Provisional	99.07
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.06
TIGR00901		356	2A0125 AmpG-related permease.	99.06
PRK11010		491	ampG muropeptide transporter; Validated	99.06
TIGR00788		468	fbt folate/biopterin transporter. The only functio	99.06
KOG2615		451	consensus Permease of the major facilitator superf	99.06
COG2270		438	Permeases of the major facilitator superfamily [Ge	99.05
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	99.04
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.03
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.03
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	99.03
PRK09848		448	glucuronide transporter; Provisional	99.01
COG2211		467	MelB Na+/melibiose symporter and related transport	99.01
PRK10133		438	L-fucose transporter; Provisional	99.01
PRK09528		420	lacY galactoside permease; Reviewed	99.0
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	98.97
PRK10429		473	melibiose:sodium symporter; Provisional	98.96
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	98.96
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	98.94
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	98.94
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	98.93
PRK11902		402	ampG muropeptide transporter; Reviewed	98.93
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.91
PRK11462		460	putative transporter; Provisional	98.9
PRK15011		393	sugar efflux transporter B; Provisional	98.9
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.9
KOG0569		485	consensus Permease of the major facilitator superf	98.9
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	98.87
TIGR00896		355	CynX cyanate transporter. This family of proteins	98.85
KOG0254		513	consensus Predicted transporter (major facilitator	98.84
KOG3764		464	consensus Vesicular amine transporter [Intracellul	98.83
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.77
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.72
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	98.72
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.7
KOG2532		466	consensus Permease of the major facilitator superf	98.7
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.69
KOG2533		495	consensus Permease of the major facilitator superf	98.68
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	98.67
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.61
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.6
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	98.57
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.56
KOG1330		493	consensus Sugar transporter/spinster transmembrane	98.55
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	98.51
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	98.5
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.42
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	98.4
TIGR00788		468	fbt folate/biopterin transporter. The only functio	98.36
PF13347		428	MFS_2: MFS/sugar transport protein	98.34
KOG2816		463	consensus Predicted transporter ADD1 (major facili	98.31
TIGR00805		633	oat sodium-independent organic anion transporter.	98.31
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	98.23
KOG2325		488	consensus Predicted transporter/transmembrane prot	98.17
KOG3764		464	consensus Vesicular amine transporter [Intracellul	98.1
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.1
PRK09669		444	putative symporter YagG; Provisional	98.09
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.09
KOG2563		480	consensus Permease of the major facilitator superf	98.07
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.02
PRK10429		473	melibiose:sodium symporter; Provisional	98.01
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	98.0
PRK11462		460	putative transporter; Provisional	97.96
KOG3626		735	consensus Organic anion transporter [Secondary met	97.95
PTZ00207		591	hypothetical protein; Provisional	97.95
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	97.91
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.9
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.68
TIGR00926		654	2A1704 Peptide:H+ symporter (also transports b-lac	97.65
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.61
KOG2615		451	consensus Permease of the major facilitator superf	97.61
KOG3762		618	consensus Predicted transporter [General function	97.6
KOG2563		480	consensus Permease of the major facilitator superf	97.58
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	97.49
PRK09848		448	glucuronide transporter; Provisional	97.48
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.46
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.45
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.44
COG2211		467	MelB Na+/melibiose symporter and related transport	97.41
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.4
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	97.35
KOG2816		463	consensus Predicted transporter ADD1 (major facili	97.28
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	97.28
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	97.24
KOG3098		461	consensus Uncharacterized conserved protein [Funct	97.04
TIGR00769		472	AAA ADP/ATP carrier protein family. These proteins	96.99
PF12832		77	MFS_1_like: MFS_1 like family	96.89
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.8
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.6
COG0477		338	ProP Permeases of the major facilitator superfamil	96.52
KOG3626		735	consensus Organic anion transporter [Secondary met	96.49
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	96.19
TIGR00939		437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.88
KOG0637		498	consensus Sucrose transporter and related proteins	95.67
PF07672		267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.53
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	95.51
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.31
KOG2325		488	consensus Predicted transporter/transmembrane prot	95.22
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.63
COG2270		438	Permeases of the major facilitator superfamily [Ge	94.61
PF03219		491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.54
KOG3810		433	consensus Micronutrient transporters (folate trans	94.4
PF01733		309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.28
PF00854		372	PTR2: POT family; InterPro: IPR000109 This entry r	94.18
KOG1479		406	consensus Nucleoside transporter [Nucleotide trans	93.27
KOG3574		510	consensus Acetyl-CoA transporter [Inorganic ion tr	93.11
KOG1237		571	consensus H+/oligopeptide symporter [Amino acid tr	93.08
KOG3574		510	consensus Acetyl-CoA transporter [Inorganic ion tr	92.91
PF13000		544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.61
PF06779		85	DUF1228: Protein of unknown function (DUF1228); In	92.59
PRK03612		521	spermidine synthase; Provisional	91.37
COG3202		509	ATP/ADP translocase [Energy production and convers	90.51
PF02487		402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	86.47
KOG3098		461	consensus Uncharacterized conserved protein [Funct	86.24
KOG3762		618	consensus Predicted transporter [General function	84.08

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.3e-34  Score=268.05  Aligned_cols=298  Identities=29%  Similarity=0.474  Sum_probs=249.2

Q ss_pred             chhhHHHHHhh------CccchHHHHHHhHHHHHHHHHHHhcCCCChHHHHh-cCCHHHHHHHHHHHhCCCcchHHHHHH
Q 019756            3 TFGCSLAYFFG------NVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVK-IGKEKEFETTLQNLRGKGADISQEAAE   75 (336)
Q Consensus         3 ~~G~~l~~~l~------~~~gWr~~f~i~~i~~~i~~~~~~~lpEsp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~   75 (336)
                      ++|.+++..++      ..-.|++.+.+..+++++.++...++|||||||.. +++++||+++++++++++++.++..++
T Consensus       162 ~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~  241 (485)
T KOG0569|consen  162 VIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEM  241 (485)
T ss_pred             HHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHH
Confidence            45666665444      44479999999999999999999999999999987 899999999999999887433333222


Q ss_pred             HHHHHHHh-hchhhHHHHHHhhhhh-HHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHH
Q 019756           76 IRDHIEIS-QKHSEARLLNLFQRRY-ANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPA  150 (336)
Q Consensus        76 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g  150 (336)
                      .++..+++ .++++.++.|+++++. ++...+...+...+++++.+...+|...++++.|++..   +.+...++..++.
T Consensus       242 ~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~  321 (485)
T KOG0569|consen  242 LREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLS  321 (485)
T ss_pred             HHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            22222222 2236668899998754 45566677788889999999999999999999999876   7888899999999


Q ss_pred             HHHHHHhhhhcCCceeeeeecccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHH
Q 019756          151 VITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVL  230 (336)
Q Consensus       151 ~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (336)
                      ++++.+++||.|||++++.                            ++.++.+...++.......+...  .+..+..+
T Consensus       322 t~~~~~lid~~gRRpLll~----------------------------~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i  371 (485)
T KOG0569|consen  322 TLVSPFLIDRLGRRPLLLI----------------------------SLSLMAVALLLMSIALFLSNSFG--SWLSYLCI  371 (485)
T ss_pred             HHHHHHHHHhcCCcHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence            9999999999999999999                            99999998888887766654432  34556667


Q ss_pred             HHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHH
Q 019756          231 VGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ-WSSAGTFFIFSGIGFFTVLFV  309 (336)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~  309 (336)
                      .....+...++.|.+|+++.+.+|++|++.|+.++++.....|+++++....++.+.+ .+. ..|+.+.+.+.+..+..
T Consensus       372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~  450 (485)
T KOG0569|consen  372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYL  450 (485)
T ss_pred             HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999999999999999999998 444 88889999999999999


Q ss_pred             HhhccCCCCCCHHHHHHHHccc
Q 019756          310 AKIVPETKGRTLEEIQDSIITS  331 (336)
Q Consensus       310 ~~~~~et~~~~~~~~~~~~~~~  331 (336)
                      ++.+||||+|+.+|+.++++++
T Consensus       451 ~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  451 YRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999998887755

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>KOG3762 consensus Predicted transporter [General function prediction only]	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>TIGR00769 AAA ADP/ATP carrier protein family	Back alignment and domain information

>PF12832 MFS_1_like: MFS_1 like family	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)	Back alignment and domain information

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions	Back alignment and domain information

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]	Back alignment and domain information

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs	Back alignment and domain information

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters	Back alignment and domain information

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]	Back alignment and domain information

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]	Back alignment and domain information

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]	Back alignment and domain information

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters	Back alignment and domain information

>PRK03612 spermidine synthase; Provisional	Back alignment and domain information

>COG3202 ATP/ADP translocase [Energy production and conversion]	Back alignment and domain information

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3762 consensus Predicted transporter [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		336
4gby_A		491	The Structure Of The Mfs (Major Facilitator Superfa		2e-21

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Back alignment and structure

Iteration: 1

Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 143/322 (44%), Gaps = 51/322 (15%) Query: 14 NVIPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEA 73 N WR + IP +L L+ L+ +PESPRWL+ GK+++ E L+ + G +Q Sbjct: 195 NTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN-TLATQAV 253 Query: 74 AEIRDHIEISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKXX 133 EI+ ++ +K + RLL +F ++IGV L + QQF G + + YY +F+ Sbjct: 254 QEIKHSLDHGRK-TGGRLL-MFG---VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308 Query: 134 XXXXXXXXXXX---XXQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYEN 190 + + +++ +DK GRKPL + Sbjct: 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI---------------------- 346 Query: 191 GYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFV 250 I A GMA G F +G +FY A I+ L+ + A ++ + +V Sbjct: 347 ------IGALGMAIGMFSLGTAFY-------TQAPGIVALLSMLFYVAAFAMSWGPVCWV 393 Query: 251 IMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ--WXXXXXXXXXXX-----XXX 303 ++SEIFP ++ A ++ + W ++ V++TF M + W Sbjct: 394 LLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 Query: 304 XXVLFVAKIVPETKGRTLEEIQ 325 LF+ K VPETKG+TLEE++ Sbjct: 454 LAALFMWKFVPETKGKTLEELE 475

PyMOL of 4gby

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		336
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 57.2 bits (137), Expect = 4e-09
 Identities = 38/251 (15%), Positives = 69/251 (27%), Gaps = 60/251 (23%)

Query: 45  WLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDH---IEISQKHSEARLLNLF-QRRYA 100
           WL  +      ET L+ L+     I        DH   I++     +A L  L   + Y 
Sbjct: 186 WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 101 NSLII--GVGLMLLQQFGGASAMAYYTSSIFEKAGASGSIGSRGIAIIQIPAVITSVLLM 158
           N L++   V                  +  +        +  + I +      +T  L  
Sbjct: 245 NCLLVLLNV----------------QNAKAWNAFN----LSCK-ILLTTRFKQVTDFLSA 283

Query: 159 DKAGRKPL---LMVITTSRTLFKMF-DFVDQRGYENGYQYLQISAC-GMAFGCFLIGLSF 213
                  L    M +T       +   ++D R      Q L             +I  S 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVK-SLLLKYLDCR-----PQDLPREVLTTNPRRLSIIAES- 336

Query: 214 YLKEVKNMNDA-AHILVLVGFMGCSAFNSI---GLAGIPFVIMSE------IFPINVKAS 263
            +++     D   H+        C    +I    L  +      +      +FP +    
Sbjct: 337 -IRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 264 AGSLVILICWS 274
              L ++  W 
Sbjct: 389 TILLSLI--WF 397

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		336
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	99.98
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.73
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.65
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.64
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.62
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.47
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.46
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.44
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.36
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.35
2xut_A		524	Proton/peptide symporter family protein; transport	99.27
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	99.26
2xut_A		524	Proton/peptide symporter family protein; transport	99.08
2cfq_A		417	Lactose permease; transport, transport mechanism,	98.68

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

Probab=99.98  E-value=6.6e-31  Score=250.05  Aligned_cols=278  Identities=31%  Similarity=0.563  Sum_probs=207.5

Q ss_pred             cchHHHHHHhHHHHHHHHHHHhcCCCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhchhhHHHHHHh
Q 019756           16 IPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLF   95 (336)
Q Consensus        16 ~gWr~~f~i~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (336)
                      .+||+++.+..+++++.++.++++||||||+..+++.|++++.+++..+++...++. .+.++..+++++  ....... 
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-  272 (491)
T 4gc0_A          197 DGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV-QEIKHSLDHGRK--TGGRLLM-  272 (491)
T ss_dssp             THHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HTTHHHH-
T ss_pred             hhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH-HHHHHHHHhhhh--hhhHHHH-
Confidence            479999999999999999999999999999999999999999998886543222111 111111111111  1111111 


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecc
Q 019756           96 QRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITT  172 (336)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~  172 (336)
                        ...++..+......+.++.+.+.+.+|.+.+.+..+.+..   ......++..+++.++++++.||+|||+.++.   
T Consensus       273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~---  347 (491)
T 4gc0_A          273 --FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII---  347 (491)
T ss_dssp             --SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH---
T ss_pred             --hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc---
Confidence              2233445555566777777888999999999998877654   45667778889999999999999999999888   


Q ss_pred             cccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhh
Q 019756          173 SRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIM  252 (336)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (336)
                                               +...+.++++.++......       ...+..++....+..++..+..++.+.+.
T Consensus       348 -------------------------~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (491)
T 4gc0_A          348 -------------------------GALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLL  395 (491)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred             -------------------------chHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                                     7777777777666543322       22344455555666677778888999999


Q ss_pred             cccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------hhcchhhhHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 019756          253 SEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ-------WSSAGTFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQ  325 (336)
Q Consensus       253 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~et~~~~~~~~~  325 (336)
                      +|++|++.|++++|+.+..+++++++++.+.+.+.+       .+...++++++++++++.++.++++||||++++||+|
T Consensus       396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            999999999999999999999999999988876643       3455678899999999999999999999999999999


Q ss_pred             HHHcccCCC
Q 019756          326 DSIITSFAG  334 (336)
Q Consensus       326 ~~~~~~~~~  334 (336)
                      +.++++...
T Consensus       476 ~~f~~~~~~  484 (491)
T 4gc0_A          476 ALWEPETKK  484 (491)
T ss_dssp             GGTC-----
T ss_pred             HHhCCCCcc
Confidence            988876543

PyMOL of 4gc0

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		336
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.64
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.62
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.47
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.09

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=4.3e-17  Score=149.71  Aligned_cols=248  Identities=10%  Similarity=0.080  Sum_probs=137.7

Q ss_pred             ccchHHHHHHhHHHHHHH-HHHHhcCCCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhchhhHHHHH
Q 019756           15 VIPWRILALIGVIPCVLQ-LIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLN   93 (336)
Q Consensus        15 ~~gWr~~f~i~~i~~~i~-~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (336)
                      ..+||+.|++.++..++. ++.+.+++|+|+........++           ..+..+   +..++.+++...++...+.
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~  244 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPD---DYNEKAEQELTAKQIFMQY  244 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----------------CCTHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------hhhccc---chhhccccccchhhHHHHH
Confidence            448999999977665554 4555667777653211111100           000000   0011111111222333444


Q ss_pred             HhhhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-hCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeee
Q 019756           94 LFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEK-AGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMV  169 (336)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~  169 (336)
                      .++++..+......+.    ..........+.+.++.+ .+.+..   .......+..+++.++.+++.||.+||+....
T Consensus       245 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  320 (447)
T d1pw4a_         245 VLPNKLLWYIAIANVF----VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  320 (447)
T ss_dssp             TSSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHcCchHHHHHHHhhh----hhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence            4444444433332222    222244455556665544 455544   56667778889999999999999999875544


Q ss_pred             ecccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhh
Q 019756          170 ITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPF  249 (336)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (336)
                                                  ...............  .....    ...+...+ .....++...+..+...
T Consensus       321 ----------------------------~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~~  365 (447)
T d1pw4a_         321 ----------------------------GVFFMTLVTIATIVY--WMNPA----GNPTVDMI-CMIVIGFLIYGPVMLIG  365 (447)
T ss_dssp             ----------------------------HHHHHHHHHHHHHHT--TSCCT----TCHHHHHH-HHHHHHHHHTHHHHHHH
T ss_pred             ----------------------------cchhHHHHHHHHHHH--Hhccc----ccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence                                        222222222222211  11110    11222222 22233333444456667


Q ss_pred             hhhcccCCccchhhhhHHHHHHHHHH-HHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHHHhhccC
Q 019756          250 VIMSEIFPINVKASAGSLVILICWSC-SWIVTYTFNFMMQ-WSSAGTFFIFSGIGFFTVLFVAKIVPE  315 (336)
Q Consensus       250 ~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~e  315 (336)
                      .+..|.+|++.|+++.|+.+..++++ ..++|.+.+.+.+ .++...+.+.+++.+++.++...+.++
T Consensus       366 ~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999998885 5668999999888 778888888888777777766555443

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure