Citrus Sinensis ID: 019778

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccEEEcccccccEEEEHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHcccc
ccccEcccccccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEccccccccccccccccHEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHEEEEcccccccccccEEcccccccccccEEEEEccccccEEEEEcccccccEEEEEccccccEEEEccHHHHHHHcccEccEEEEEEcccccEEEEEEEcccccccEEcccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
menygrskngaeaQTVLncidlsspdiQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRnekhrgytpvldelldpdtqvrgdykegyyigvevpegdpesekpfygpnvwpapdclpgwRETMERFQREALEVAKAVARIIALALdldadffdkpeMLGQAIATLRLLHyegqisdpskgmygagahsdyGLITLLATdevaglqickdrdakpqlwedvapmkgAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVepshdclveclptcksdknppkfppikcetyLSQRYKDTHADLnmynkqqt
menygrskngaeAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVlrnekhrgytpvldelldpdtqvrgDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPtcksdknppkfppIKCETYLSQRYKDTHADLNMYNKQQT
MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIalaldldadFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
**************TVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEV**********FYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCK*********PIKCETYLSQ*****************
****************LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDE*********GDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDP*****GAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADL********
**********AEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
*********GAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQ*
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.738 0.683 0.310 2e-32
A6BM06368 1-aminocyclopropane-1-car N/A no 0.812 0.741 0.3 2e-30
Q76NT9368 1-aminocyclopropane-1-car no no 0.812 0.741 0.3 2e-30
Q7LL04321 UPF0676 protein C1494.01 yes no 0.803 0.841 0.331 4e-27
P40902397 Sexual differentiation pr no no 0.913 0.773 0.267 1e-25
A2A1A0352 S-norcoclaurine synthase N/A no 0.800 0.764 0.315 2e-25
Q96330336 Flavonol synthase/flavano no no 0.800 0.800 0.296 3e-25
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.818 0.811 0.298 6e-25
O49561338 Gibberellin 2-beta-dioxyg no no 0.738 0.733 0.299 2e-24
Q07512348 Flavonol synthase/flavano N/A no 0.839 0.810 0.293 3e-23
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 148/283 (52%), Gaps = 35/283 (12%)

Query: 34  LKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKV---LRNEKHRGYTPVL 90
           ++ AC + GFFY+  HGI QE ++ +   SK+FF +  + KMK    L  +  RGY  V 
Sbjct: 38  IENACKNFGFFYIKGHGIDQELIDRLERLSKKFFSLDQSIKMKYRMELAQKAWRGYFVVG 97

Query: 91  DELLDPDTQVRGDYKEGYYIGVEVPEGDPE--SEKPFYGPNVWPAPD-----CLPGWRET 143
            EL    T    D+KEG Y+G E+ +  P   ++ P +G N++P  +      + G+++T
Sbjct: 98  GEL----TSGLKDWKEGLYLGTELNDDHPLVIAQTPLHGLNLFPTLEEEIEYDIVGFKDT 153

Query: 144 MERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQIS------- 196
           +  +  +  ++  ++  +IA++L+L AD+F         +   R+ +Y   IS       
Sbjct: 154 ILTYIDKVTKLGHSLMELIAISLNLSADYF-SSRYTKDPLILYRIFNYPSIISSGDDNKT 212

Query: 197 ------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIV 250
                 D  K  +G G H+DYG++T+L  D+V GLQ+          W    P+KG F+ 
Sbjct: 213 TGESSDDNDKVEWGVGEHTDYGVLTILYQDDVGGLQVHSKNG-----WISAPPIKGTFVC 267

Query: 251 NLGDMLERWSNCIFKSTLHRVL--GTGRERYSIAFFVEPSHDC 291
           N+GDML+R +  +++ST HRV    +GR+R S   F +P+ + 
Sbjct: 268 NIGDMLDRMTGGLYRSTPHRVELNRSGRDRISFPLFFDPNFNS 310

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
225445104358 PREDICTED: probable iron/ascorbate oxido 0.982 0.921 0.830 1e-165
297738763330 unnamed protein product [Vitis vinifera] 0.982 1.0 0.830 1e-164
255546339340 Hyoscyamine 6-dioxygenase, putative [Ric 1.0 0.988 0.794 1e-163
225445102364 PREDICTED: probable iron/ascorbate oxido 0.982 0.906 0.815 1e-163
388522983340 unknown [Medicago truncatula] 0.958 0.947 0.816 1e-160
224143624336 predicted protein [Populus trichocarpa] 0.958 0.958 0.820 1e-160
255641899331 unknown [Glycine max] 0.958 0.972 0.820 1e-159
356495885331 PREDICTED: probable iron/ascorbate oxido 0.958 0.972 0.801 1e-158
255636224331 unknown [Glycine max] 0.958 0.972 0.798 1e-158
223944829329 unknown [Zea mays] gi|413947624|gb|AFW80 0.964 0.984 0.753 1e-150
>gi|225445104|ref|XP_002283713.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/336 (83%), Positives = 303/336 (90%), Gaps = 6/336 (1%)

Query: 1   MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVF 60
           MEN G+S       +VLNCIDLSSPDI +SVSLLKQACLD GFFYV+NHGISQEFM+EVF
Sbjct: 29  MENRGQSF------SVLNCIDLSSPDIHKSVSLLKQACLDSGFFYVINHGISQEFMDEVF 82

Query: 61  SQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPE 120
           +QSKRFF +PL+EKMK LRNEKHRGYTPVLDE+LDP+ QV GDYKEGYYIGVEVPE DP+
Sbjct: 83  AQSKRFFTLPLSEKMKHLRNEKHRGYTPVLDEVLDPENQVNGDYKEGYYIGVEVPEHDPK 142

Query: 121 SEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLG 180
           SEKPFYGPNVWPA D LP WR+TME+F +EALEVAKAVARIIALALDL+ DFFDKPEMLG
Sbjct: 143 SEKPFYGPNVWPAADRLPEWRQTMEKFHQEALEVAKAVARIIALALDLERDFFDKPEMLG 202

Query: 181 QAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWED 240
             IATLRLLHYEGQISDP KG+YGAGAHSDYGLITLLATD+V GLQICKD+DA+PQ WE 
Sbjct: 203 DPIATLRLLHYEGQISDPLKGIYGAGAHSDYGLITLLATDDVLGLQICKDKDARPQTWEY 262

Query: 241 VAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCK 300
           VAP+KGAFIVNLGDMLERWSNCIFKSTLHRVL  G ERYSIA+FVEPSHDCLVECLPTCK
Sbjct: 263 VAPLKGAFIVNLGDMLERWSNCIFKSTLHRVLVHGPERYSIAYFVEPSHDCLVECLPTCK 322

Query: 301 SDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT 336
           SDKNPPKFPP+KC TYL+QRYKDTHADLN+Y K Q 
Sbjct: 323 SDKNPPKFPPVKCGTYLTQRYKDTHADLNLYTKHQA 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738763|emb|CBI28008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546339|ref|XP_002514229.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223546685|gb|EEF48183.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225445102|ref|XP_002283708.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388522983|gb|AFK49553.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224143624|ref|XP_002325020.1| predicted protein [Populus trichocarpa] gi|222866454|gb|EEF03585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255641899|gb|ACU21218.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356495885|ref|XP_003516801.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|255636224|gb|ACU18453.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|223944829|gb|ACN26498.1| unknown [Zea mays] gi|413947624|gb|AFW80273.1| hypothetical protein ZEAMMB73_441487 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.943 0.963 0.698 3.3e-127
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.973 0.990 0.612 1.1e-112
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.583 0.685 0.649 1.6e-94
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.747 1.0 0.602 2e-88
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.729 0.991 0.456 3.2e-58
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.880 0.848 0.384 4.1e-49
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.791 0.768 0.359 4.3e-38
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.797 0.845 0.343 2.2e-34
TAIR|locus:2074800332 AT3G50210 [Arabidopsis thalian 0.836 0.846 0.313 1.4e-32
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.925 0.891 0.314 6e-32
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 222/318 (69%), Positives = 267/318 (83%)

Query:    17 LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMK 76
             LNCIDL++ D+  SV  LKQACLDCGFFYV+NHGIS+EFM++VF QSK+ F +PL EKMK
Sbjct:    12 LNCIDLANDDLNHSVVSLKQACLDCGFFYVINHGISEEFMDDVFEQSKKLFALPLEEKMK 71

Query:    77 VLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDC 136
             VLRNEKHRGYTPVLDELLDP  Q+ GD+KEGYYIG+EVP+ DP  +KPFYGPN WP  D 
Sbjct:    72 VLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADV 131

Query:   137 LPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQIS 196
             LPGWRETME++ +EAL V+ A+AR++         +FD+ EMLG+ IAT+RLL Y+G IS
Sbjct:   132 LPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDRTEMLGKPIATMRLLRYQG-IS 190

Query:   197 DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDML 256
             DPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A PQ WE V P+KGAFIVNLGDML
Sbjct:   191 DPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDML 250

Query:   257 ERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETY 316
             ERWSN  FKSTLHRVLG G+ERYSI FFVEP+HDCLVECLPTCKS+   PK+PPIKC TY
Sbjct:   251 ERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTY 310

Query:   317 LSQRYKDTHADLNMYNKQ 334
             L+QRY++THA+L++Y++Q
Sbjct:   311 LTQRYEETHANLSIYHQQ 328
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2074800 AT3G50210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7LL04YQK1_SCHPONo assigned EC number0.33100.80350.8411yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016670001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (330 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 0.0
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-87
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-84
PLN02485329 PLN02485, PLN02485, oxidoreductase 7e-55
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 4e-40
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 3e-39
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-36
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-36
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 7e-35
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 4e-32
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-31
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-29
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 4e-27
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 8e-27
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 3e-26
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-25
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-24
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 7e-24
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-23
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-23
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-22
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-20
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-18
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-17
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-16
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 9e-16
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-13
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 5e-08
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-06
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 9e-04
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  503 bits (1295), Expect = 0.0
 Identities = 231/334 (69%), Positives = 283/334 (84%), Gaps = 3/334 (0%)

Query: 1   MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVF 60
           MEN+  +K+     + LNCIDL++ D+  SV+ LKQACLDCGFFYV+NHGI++EFM++VF
Sbjct: 1   MENH--TKDSTMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVF 58

Query: 61  SQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPE 120
            QSK+FF +PL EKMKVLRNEKHRGYTPVLDE LDP  Q+ GD+KEGYYIG+EVP+ DP 
Sbjct: 59  EQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPH 118

Query: 121 SEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLG 180
            +KPFYGPN WP  D LPGWRETME++ +EAL V+ A+A+++ALALDLD  +FD+ EMLG
Sbjct: 119 WDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLG 178

Query: 181 QAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWED 240
           + IAT+RLL Y+G ISDPSKG+Y  GAHSD+G++TLLATD V GLQICKD++A PQ WE 
Sbjct: 179 KPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY 237

Query: 241 VAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCK 300
           V P+KGAFIVNLGDMLERWSN  FKSTLHRVLG G+ERYSI FFVEP+HDCLVECLPTCK
Sbjct: 238 VPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCK 297

Query: 301 SDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQ 334
           S+ + PK+PPIKC TYL+QRY++THA L++Y++Q
Sbjct: 298 SESDLPKYPPIKCSTYLTQRYEETHAKLSIYHQQ 331

Length = 332
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.93
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.9
PLN03176120 flavanone-3-hydroxylase; Provisional 99.71
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 95.62
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.16
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.12
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 92.99
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 91.4
TIGR02466201 conserved hypothetical protein. This family consis 89.03
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 84.5
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 83.07
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=4.9e-77  Score=556.44  Aligned_cols=331  Identities=69%  Similarity=1.238  Sum_probs=283.8

Q ss_pred             CCCCCCCCCCCCCCCcccEEeCCCccHHHHHHHHHHHhhcccEEEEEccCCCHHHHHHHHHHHHHHhCCCHHHHhhhccC
Q 019778            1 MENYGRSKNGAEAQTVLNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRN   80 (336)
Q Consensus         1 ~~~~~~~~~~~~~~~~iPvIDl~~~~~~~~~~~l~~A~~~~GfF~l~~hGi~~~~~~~~~~~a~~fF~lp~e~K~~~~~~   80 (336)
                      |||.  -++..+....||+|||+..++..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++...
T Consensus         1 ~~~~--~~~~~~~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~   78 (332)
T PLN03002          1 MENH--TKDSTMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRN   78 (332)
T ss_pred             CCcc--cccccCCCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccC
Confidence            6666  44555677899999998666778899999999999999999999999999999999999999999999999766


Q ss_pred             CCCccccccCceeccCCCCCCCCceeeeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 019778           81 EKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVAR  160 (336)
Q Consensus        81 ~~~~GY~~~~~e~~~~~~~~~~d~~E~f~~~~~~~~~~p~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~  160 (336)
                      ...+||.+.+.+..+.......|++|.|+++...+.+++......+++|.||....+|+||+++++|+++|.+|+..||+
T Consensus        79 ~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~  158 (332)
T PLN03002         79 EKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAK  158 (332)
T ss_pred             CCCCCcCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            66899998877765433223479999999986555554433334567899998644689999999999999999999999


Q ss_pred             HHHHhCCCCccccCCccccccccceeeecccCCCCCCCCCCCCccccCCCcCceeeEeeCCCCceeEEeCCCCCCCceEE
Q 019778          161 IIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWED  240 (336)
Q Consensus       161 ~l~~~Lgl~~~~~~~~~~~~~~~s~lrl~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLqV~~~~~~~~~~W~~  240 (336)
                      +|+++||+++++|.+......+.+.||++||||++.. ....+|+++|||+|+||||+||+++||||+..+...+|+|++
T Consensus       159 ~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~-~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~  237 (332)
T PLN03002        159 LLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDP-SKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY  237 (332)
T ss_pred             HHHHHcCCChHHhccccccCCCchheeeeeCCCCCCc-ccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEE
Confidence            9999999999999821244556789999999998753 335799999999999999999999999998753112378999


Q ss_pred             ccccCCeEEEECCchhHHhhCCccccccceecCCCCCceeeEEeecCCCCceeecCCCCCCCCCCCCCCCcCHHHHHHHH
Q 019778          241 VAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQR  320 (336)
Q Consensus       241 v~~~~~~~iVn~Gd~l~~~T~G~~ka~~HRV~~~~~~R~Si~~F~~P~~d~~i~p~~~~~~~~~~~~~~~~t~~e~~~~~  320 (336)
                      |+|.||++|||+||+|++||||+|||++|||+.++.+||||+||++|+.|++|.|+++++++++|.+|++++++||+..+
T Consensus       238 Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~pl~~~~~~~~p~~y~~~~~~e~l~~~  317 (332)
T PLN03002        238 VPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQR  317 (332)
T ss_pred             CCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEecCCcccCCCCcccCCCccHHHHHHHH
Confidence            99999999999999999999999999999999877799999999999999999999999998899999999999999999


Q ss_pred             HHhhhhcccccccc
Q 019778          321 YKDTHADLNMYNKQ  334 (336)
Q Consensus       321 ~~~~~~~~~~~~~~  334 (336)
                      +...|...+.++++
T Consensus       318 ~~~~~~~~~~~~~~  331 (332)
T PLN03002        318 YEETHAKLSIYHQQ  331 (332)
T ss_pred             HHHHhhhhccccCC
Confidence            99999866655543

>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-23
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-15
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-15
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 7e-15
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 8e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-14
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-14
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-14
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 21/289 (7%)
Query: 42  GFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEK-HRGYTPVLDELLDPDTQV 100
           GF  + ++ + Q  ++     +K FF +P+  K +    +   RGY P   E        
Sbjct: 34  GFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHY 93
Query: 101 RGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVAR 160
             D KE ++ G ++P G     +     NVWPA   +P ++  +             V  
Sbjct: 94  --DLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLE 147
Query: 161 IIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATD 220
            I         FF      G ++  LRLLHY   I   + G+  AGAH D   ITLL   
Sbjct: 148 AIATYLKLERDFFKPTVQDGNSV--LRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGA 203
Query: 221 EVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-----TG 275
           E  GL++  DRD +   W  + P  G  ++N+GD LER +N +  ST+HRV+       G
Sbjct: 204 EEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 276 RERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKD 323
             RYS  FF+  + D  ++ L  C + +NP ++P  I  + +L QR ++
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-142
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-131
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 1e-120
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-109
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 4e-69
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-67
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  403 bits (1037), Expect = e-142
 Identities = 89/322 (27%), Positives = 144/322 (44%), Gaps = 23/322 (7%)

Query: 13  AQTVLNCIDLS--SPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMP 70
           + + ++ +  S  + D  +    L  +    GF  + ++ + Q  ++     +K FF +P
Sbjct: 3   STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP 62

Query: 71  LNEKMKVLR-NEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPN 129
           +  K +        RGY P   E          D KE +++G ++P G     +     N
Sbjct: 63  VETKKQYAGVKGGARGYIPFGVETAKGAD--HYDLKEFWHMGRDLPPGHR--FRAHMADN 118

Query: 130 VWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLL 189
           VW  P  +P ++  +         +   V   IA  L L+ DFF     +    + LRLL
Sbjct: 119 VW--PAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLL 174

Query: 190 HYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFI 249
           HY     D       AGAH D   ITLL   E  GL++  DRD +   W  + P  G  +
Sbjct: 175 HYPPIPKDA--TGVRAGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLV 228

Query: 250 VNLGDMLERWSNCIFKSTLHRVL-----GTGRERYSIAFFVEPSHDCLVECLPTCKSDKN 304
           +N+GDMLER +N +  ST+HRV+       G  RYS  FF+  + D  ++ L  C + +N
Sbjct: 229 INIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAEN 288

Query: 305 PPKFP-PIKCETYLSQRYKDTH 325
           P ++P  I  + +L QR ++  
Sbjct: 289 PDRYPESITADEFLQQRLREIK 310
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 93.02
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 91.57
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.45
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 89.24
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 87.73
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 85.23
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.79
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 81.37
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 81.25
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=8.2e-75  Score=537.87  Aligned_cols=299  Identities=29%  Similarity=0.518  Sum_probs=263.7

Q ss_pred             CCCCcccEEeCCC--ccHHHHHHHHHHHhhcccEEEEEccCCCHHHHHHHHHHHHHHhCCCHHHHhhhccC-CCCccccc
Q 019778           12 EAQTVLNCIDLSS--PDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRN-EKHRGYTP   88 (336)
Q Consensus        12 ~~~~~iPvIDl~~--~~~~~~~~~l~~A~~~~GfF~l~~hGi~~~~~~~~~~~a~~fF~lp~e~K~~~~~~-~~~~GY~~   88 (336)
                      |...+||||||+.  .++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ...+||.+
T Consensus         2 m~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~   81 (312)
T 3oox_A            2 MSTSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP   81 (312)
T ss_dssp             --CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEEC
T ss_pred             CCCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCcccccc
Confidence            4567899999973  25778999999999999999999999999999999999999999999999998774 67899999


Q ss_pred             cCceeccCCCCCCCCceeeeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 019778           89 VLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIALALDL  168 (336)
Q Consensus        89 ~~~e~~~~~~~~~~d~~E~f~~~~~~~~~~p~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl  168 (336)
                      .+.+.....  ...|++|.|.++.+.+.++|.  .....+|.||+.  +|+||+++++|+++|.+++..||++|+++||+
T Consensus        82 ~g~e~~~~~--~~~D~kE~~~~~~~~~~~~~~--~~~~~~n~wP~~--~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl  155 (312)
T 3oox_A           82 FGVETAKGA--DHYDLKEFWHMGRDLPPGHRF--RAHMADNVWPAE--IPAFKHDVSWLYNSLDGMGGKVLEAIATYLKL  155 (312)
T ss_dssp             CCCCCSTTS--CSCCCCEEEEECCCCCTTCGG--GGTSCCCCCCTT--STTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ccceecCCC--CCCCceeeeEeecCCCcCCcc--hhccCCCCCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            888765432  467999999997654433321  123567999987  79999999999999999999999999999999


Q ss_pred             CccccCCccccccccceeeecccCCCCCCCCCCCCccccCCCcCceeeEeeCCCCceeEEeCCCCCCCceEEccccCCeE
Q 019778          169 DADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAF  248 (336)
Q Consensus       169 ~~~~~~~~~~~~~~~s~lrl~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLqV~~~~~~~~~~W~~v~~~~~~~  248 (336)
                      ++++|.  +.+..+.+.||++||||++.. +.+ +|+++|||+|+||||+||+++||||+.++    |+|++|+|.||++
T Consensus       156 ~~~~f~--~~~~~~~~~lr~~~Ypp~~~~-~~~-~g~~~HtD~g~lTlL~qd~v~GLqV~~~~----g~W~~V~p~pg~~  227 (312)
T 3oox_A          156 ERDFFK--PTVQDGNSVLRLLHYPPIPKD-ATG-VRAGAHGDINTITLLLGAEEGGLEVLDRD----GQWLPINPPPGCL  227 (312)
T ss_dssp             CTTTTH--HHHTTCCCEEEEEEECCCSSC-CC---CEEEECCCSSEEEEECCTTSCEEEECTT----SCEEECCCCSSCE
T ss_pred             CHHHHH--HHhcCCcceeeeEecCCCCCC-cCC-cCccceecCceEEEEeEcCcCceEEECCC----CcEEECCCCCCeE
Confidence            999998  777778899999999999864 233 99999999999999999999999999876    7799999999999


Q ss_pred             EEECCchhHHhhCCccccccceecCC-----CCCceeeEEeecCCCCceeecCCCCCCCCCCCCCC-CcCHHHHHHHHHH
Q 019778          249 IVNLGDMLERWSNCIFKSTLHRVLGT-----GRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYK  322 (336)
Q Consensus       249 iVn~Gd~l~~~T~G~~ka~~HRV~~~-----~~~R~Si~~F~~P~~d~~i~p~~~~~~~~~~~~~~-~~t~~e~~~~~~~  322 (336)
                      |||+||+||+||||+|||++|||+++     +.+||||+||++|+.|++|.|+++++++++|++|+ ++|++||+.+|++
T Consensus       228 vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~  307 (312)
T 3oox_A          228 VINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLR  307 (312)
T ss_dssp             EEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHH
T ss_pred             EEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHH
Confidence            99999999999999999999999974     45899999999999999999999999998999999 9999999999998


Q ss_pred             hh
Q 019778          323 DT  324 (336)
Q Consensus       323 ~~  324 (336)
                      +.
T Consensus       308 ~~  309 (312)
T 3oox_A          308 EI  309 (312)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-57
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-56
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 7e-55
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-51
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  187 bits (475), Expect = 2e-57
 Identities = 70/309 (22%), Positives = 127/309 (41%), Gaps = 25/309 (8%)

Query: 20  IDLSSPD------IQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNE 73
           IDL + +       +  +  LK+A LD G  +++NHGI  + ME V    + FF + + E
Sbjct: 49  IDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEE 108

Query: 74  KMKVLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPA 133
           K K   ++          +L +  +         +++     + D               
Sbjct: 109 KEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDL-----------SIW 157

Query: 134 PDCLPGWRETMERFQREALEVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEG 193
           P     + E    + +    +A  V + +++ L L+ D  +K     + +  L++     
Sbjct: 158 PKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL-LLQMKINYY 216

Query: 194 QISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLG 253
                 +   G  AH+D   +T +  + V GLQ+  +       W     +  + ++++G
Sbjct: 217 PKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIG 271

Query: 254 DMLERWSNCIFKSTLHRVL-GTGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPI 311
           D LE  SN  +KS LHR L    + R S A F EP  D +V + LP   S ++P KFPP 
Sbjct: 272 DTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPR 331

Query: 312 KCETYLSQR 320
               ++  +
Sbjct: 332 TFAQHIEHK 340
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.89
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 82.66
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.7e-66  Score=486.60  Aligned_cols=288  Identities=26%  Similarity=0.427  Sum_probs=242.8

Q ss_pred             CCCCcccEEeCCC------ccHHHHHHHHHHHhhcccEEEEEccCCCHHHHHHHHHHHHHHhCCCHHHHhhhccCC---C
Q 019778           12 EAQTVLNCIDLSS------PDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNE---K   82 (336)
Q Consensus        12 ~~~~~iPvIDl~~------~~~~~~~~~l~~A~~~~GfF~l~~hGi~~~~~~~~~~~a~~fF~lp~e~K~~~~~~~---~   82 (336)
                      ....+||||||+.      ..+++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++....   .
T Consensus        41 ~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~  120 (349)
T d1gp6a_          41 EDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK  120 (349)
T ss_dssp             CCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTB
T ss_pred             CCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCC
Confidence            4456899999963      225678999999999999999999999999999999999999999999999997653   2


Q ss_pred             CccccccCceeccCCCCCCCCceeeeeeeccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 019778           83 HRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARII  162 (336)
Q Consensus        83 ~~GY~~~~~e~~~~~~~~~~d~~E~f~~~~~~~~~~p~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~l  162 (336)
                      ..||.....+.    .....++.+.+..... +.       .....|.||..  .+.|++.+++|+++|.+++..|++++
T Consensus       121 ~~~~g~~~~~~----~~~~~~~~~~~~~~~~-~~-------~~~~~n~wp~~--~~~f~e~~~~~~~~~~~la~~ll~~l  186 (349)
T d1gp6a_         121 IQGYGSKLANN----ASGQLEWEDYFFHLAY-PE-------EKRDLSIWPKT--PSDYIEATSEYAKCLRLLATKVFKAL  186 (349)
T ss_dssp             CSEEECCCCCS----TTCCCCSCEEEEEEEE-SG-------GGCCGGGSCCS--STTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccc----cccccchhhhhccccc-cc-------ccccccccccc--cchHHHHHHHHHHHHHHHHHhhhHHH
Confidence            33443322221    1233455554433211 11       23457899987  68999999999999999999999999


Q ss_pred             HHhCCCCccccCCcccc---ccccceeeecccCCCCCCCCCCCCccccCCCcCceeeEeeCCCCceeEEeCCCCCCCceE
Q 019778          163 ALALDLDADFFDKPEML---GQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWE  239 (336)
Q Consensus       163 ~~~Lgl~~~~~~~~~~~---~~~~s~lrl~~Yp~~~~~~~~~~~~~~~HtD~g~lTiL~qd~~~GLqV~~~~~~~~~~W~  239 (336)
                      +++||+++++|.  ...   ....+.||++||||++.  ....+|+++|||+|+||||+|+.++||||...     |+|+
T Consensus       187 a~~Lgl~~~~~~--~~~~~~~~~~~~lrl~~Yp~~~~--~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~~-----g~W~  257 (349)
T d1gp6a_         187 SVGLGLEPDRLE--KEVGGLEELLLQMKINYYPKCPQ--PELALGVEAHTDVSALTFILHNMVPGLQLFYE-----GKWV  257 (349)
T ss_dssp             HHHTTSCTTHHH--HHTTHHHHCEEEEEEEEECCCSS--TTTCCSEEEECCCSSEEEEEECSCCCEEEEET-----TEEE
T ss_pred             HHHcCCCHHHHH--HHhccccccceeeeecccccccc--hhhccccccCCCCcceEEEeccCCcceeeecC-----CceE
Confidence            999999999887  443   44677899999999875  56789999999999999999999999999764     5699


Q ss_pred             EccccCCeEEEECCchhHHhhCCccccccceecC-CCCCceeeEEeecCCCCcee-ecCCCCCCCCCCCCCCCcCHHHHH
Q 019778          240 DVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-TGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPIKCETYL  317 (336)
Q Consensus       240 ~v~~~~~~~iVn~Gd~l~~~T~G~~ka~~HRV~~-~~~~R~Si~~F~~P~~d~~i-~p~~~~~~~~~~~~~~~~t~~e~~  317 (336)
                      +|+|.+|++|||+||+|++||||+|||++|||+. ++.+||||+||++|+.|++| .|++++++.+.|++|++||++||+
T Consensus       258 ~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~  337 (349)
T d1gp6a_         258 TAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI  337 (349)
T ss_dssp             ECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHH
T ss_pred             EccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHH
Confidence            9999999999999999999999999999999986 67799999999999999865 899999999999999999999999


Q ss_pred             HHHHH
Q 019778          318 SQRYK  322 (336)
Q Consensus       318 ~~~~~  322 (336)
                      +.|+.
T Consensus       338 ~~rl~  342 (349)
T d1gp6a_         338 EHKLF  342 (349)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99884
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure