Citrus Sinensis ID: 019785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHcEEEEEEEcc
Coil and Loop (DISEMBL)
memdslpngnsaaasppqnptpaaaggmtpfpklTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNvadvsdsenfskddaVNHLTSLVSRLQGLKRkleegsrtEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQnkevapalawcsdnksrlkksksKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKsntecttykalfepkqwdFLVDQFKQEFCKLYGMTLEPLLNIYLQAGlsalntpypysVICEYFCWLHL
Flexible Loop (DISEMBL)
memdslpngnsaaasppqNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGlkrkleegsrtehlqaqKCRARLNHLEsadaenlaewnntRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALqnkevapalawcsdnksrlkkskskfEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Low Complexity Region (SEG)
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Disordered region (IsUnstruct)
*********************************LTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVA********************************************************AENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSD**********KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLH*
Disordered Region (DISOPRED)
****************************************LKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVI**********************SLV*********************QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Disordered Region (DISEMBL)
***********************AAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Disordered Region (DISPRO)
**********************************TQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVICEYFCWLHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q7SXR3	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.396	3e-54
Q6GR10	396	Macrophage erythroblast a	N/A	no	0.860	0.729	0.396	4e-54
Q5F398	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.393	2e-53
Q5RKJ1	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.393	2e-53
Q4VC33	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.393	2e-53
Q5R532	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.386	2e-52
Q7L5Y9	396	Macrophage erythroblast a	yes	no	0.860	0.729	0.386	2e-52
Q4R9A8	396	Macrophage erythroblast a	N/A	no	0.863	0.732	0.385	2e-52
Q5AS80	406	Protein fyv10 OS=Emericel	yes	no	0.818	0.677	0.351	9e-48
Q3MHJ2	434	Macrophage erythroblast a	yes	no	0.860	0.665	0.342	1e-47

>sp|Q7SXR3|MAEA_DANRE Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 179/295 (60%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-ENFSK-DDAV 92
           QL+ ALK+ E+  L+VP+E   K  R   + +++E + V   VA++  +  +F   D  V
Sbjct: 9   QLSMALKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSFPVVDTVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSALKRKAAESIQAEDESAKLCKRRIEHLKEHSSDQPASVNVWKKKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERQETATCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIEL+R    + A+ +ARK+ +      + E+++VM  LAF S+
Sbjct: 189 LRKMKSCLEFSLRIQEFIELIRQNKRMDAVRHARKHFSQAEGGQLDEVRQVMGMLAFPSD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWKMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCY 303

May play a possible role in erythroblast and macrophages maturation. May associate with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.
Danio rerio (taxid: 7955)

>sp|Q6GR10|MAEA_XENLA Macrophage erythroblast attacher OS=Xenopus laevis GN=maea PE=2 SV=2

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 117/295 (39%), Positives = 178/295 (60%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+ ALK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMALKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCSAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAMESIQAEDESAKLCKRRIEHLKEHSSDQTAAINMWKKKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E    LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSEIEDLVNIEMFLTAKEVEESLERQETMTCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++VM  LAF S+
Sbjct: 189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPSD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCY 303

May play a possible role in erythroblast and macrophages maturation. May associate with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Xenopus laevis (taxid: 8355)

>sp|Q5F398|MAEA_CHICK Macrophage erythroblast attacher OS=Gallus gallus GN=MAEA PE=2 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 177/295 (60%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAANMWKKKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E    LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERQETMTCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++VM  LAF S+
Sbjct: 189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPSD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCY 303

May play a possible role in erythroblast and macrophages maturation. May associate with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Gallus gallus (taxid: 9031)

>sp|Q5RKJ1|MAEA_RAT Macrophage erythroblast attacher OS=Rattus norvegicus GN=Maea PE=2 SV=2

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 177/295 (60%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASMWKRKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIELVR    L A+ +ARK+ +    + + E+++VM  LAF  +
Sbjct: 189 LRKMKSCLEFSLRIQEFIELVRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPPD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNSSVFTLTLQAGLSAIKTPQCY 303

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Rattus norvegicus (taxid: 10116)

>sp|Q4VC33|MAEA_MOUSE Macrophage erythroblast attacher OS=Mus musculus GN=Maea PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/295 (39%), Positives = 177/295 (60%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASMWKRKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIELVR    L A+ +ARK+ +    + + E+++VM  LAF  +
Sbjct: 189 LRKMKSCLEFSLRIQEFIELVRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPPD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNSSVFTLTLQAGLSAIKTPQCY 303

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Mus musculus (taxid: 10090)

>sp|Q5R532|MAEA_PONAB Macrophage erythroblast attacher OS=Pongo abelii GN=MAEA PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 176/295 (59%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++ M  LAF  +
Sbjct: 189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCY 303

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Pongo abelii (taxid: 9601)

>sp|Q7L5Y9|MAEA_HUMAN Macrophage erythroblast attacher OS=Homo sapiens GN=MAEA PE=1 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/295 (38%), Positives = 176/295 (59%), Gaps = 6/295 (2%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query: 210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
           L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++ M  LAF  +
Sbjct: 189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPD 248

Query: 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCY 303

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Homo sapiens (taxid: 9606)

>sp|Q4R9A8|MAEA_MACFA Macrophage erythroblast attacher OS=Macaca fascicularis GN=MAEA PE=2 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/296 (38%), Positives = 176/296 (59%), Gaps = 6/296 (2%)

Query: 35  TQLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDA 91
            QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  
Sbjct: 8   VQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSV 67

Query: 92  VNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKR 148
           V+ L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R
Sbjct: 68  VSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDR 127

Query: 149 ILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKS 208
           ++V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKS
Sbjct: 128 MMVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKS 187

Query: 209 RLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKS 268
           RL+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++ M  LAF  
Sbjct: 188 RLRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPP 247

Query: 269 NTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           +T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 248 DTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCY 303

Plays a role in erythroblast enucleation and in the development of the mature macrophages. Mediates the attachment of erythroid cell to mature macrophages, in correlation with the presence of MAEA at cell surface of mature macrophages; This MAEA-mediated contact inhibits erythroid cells apoptosis. Participates to erythroblastic island formation, which is the functional unit of definitive erythropoiesis. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Macaca fascicularis (taxid: 9541)

>sp|Q5AS80|FYV10_EMENI Protein fyv10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fyv10 PE=3 SV=2

 Score =  191 bits (484), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 101/287 (35%), Positives = 170/287 (59%), Gaps = 12/287 (4%)

Query: 51  PFEHYKKTIRTNHRAVEKE---ITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKR 107
           P E  ++ +++  R VE+E   +   +   A  S S N + +  +  L  ++SR+QGLKR
Sbjct: 26  PHELARRNLKSFQRIVEREKEYVLPALKEAAKASMSGNQTPEQTLATLDVMISRMQGLKR 85

Query: 108 KLEEGSRTEHLQAQKCRARLNHLE------SADAENLAEWNNTRVKRILVDYMLRMSYYE 161
           K+E   + E     + R R+ HL       S       +W+  R+ R+++D+MLR  Y E
Sbjct: 86  KMENLQQEEKKIHHQSRKRIQHLNQLYQIPSLTDVKYDQWSRVRLDRLVIDHMLRSGYSE 145

Query: 162 TAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221
           +A++LA + NI++LVD+ VF + +++ ++L+N E   AL WC++NK+ LKKS+   EF+L
Sbjct: 146 SAQRLARAKNIEELVDLNVFVQCQRIAESLRNGETKDALQWCNENKAALKKSQYNLEFEL 205

Query: 222 RLQEFIELVRGENNLR---AITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKAL 278
           RLQ++IE++R  +  +   A+ +AR+YLAP+  T   E++R    LAF  NT    YK++
Sbjct: 206 RLQQYIEMIRTRDRAKFVDAMVHARRYLAPYDETQSAEIRRAAGLLAFPPNTRAEPYKSM 265

Query: 279 FEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYS 325
           +  ++W +L + F +   +L  +   PL++I L AGLSAL TP  +S
Sbjct: 266 YASERWVYLSELFIRTHHELLSLPSRPLMHIALSAGLSALKTPACHS 312

Involved in the proteasome-dependent degradation of fructose-1,6-bisphosphatase.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q3MHJ2|MAEA_BOVIN Macrophage erythroblast attacher OS=Bos taurus GN=MAEA PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 177/333 (53%), Gaps = 44/333 (13%)

Query: 36  QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD--SENFSKDDAV 92
           QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++    S   + D  V
Sbjct: 9   QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query: 93  NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
           + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct: 69  SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query: 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
           +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct: 129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query: 210 LKKSKSK--------------------------------------FEFQLRLQEFIELVR 231
           L+K K +                                       EF LR+QEFIEL+R
Sbjct: 189 LRKMKGRQSEHDAKTGRKSRVASGSPKESEDLGMETIKGKPELSCLEFSLRIQEFIELIR 248

Query: 232 GENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQF 291
               L A+ +ARK+ +    + + E+++VM  LAF  +T  + YK L +P +W  L+ QF
Sbjct: 249 QNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPPDTHISPYKDLLDPARWRMLIQQF 308

Query: 292 KQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
           + +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct: 309 RYDNYRLHQLGNSSVFTLTLQAGLSAIKTPQCY 341

Plays a role in erythroblast enucleation and in the development of the mature macrophages and mediates the attachment of erythroid cell to mature macrophages. Associates with F-actin to regulate actin distribution in erythroblasts and macrophages. May contribute to nuclear architecture and cells division events.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
356536518	414	PREDICTED: macrophage erythroblast attac	0.970	0.787	0.801	1e-145
224098160	412	predicted protein [Populus trichocarpa]	0.964	0.786	0.765	1e-143
225448765	412	PREDICTED: macrophage erythroblast attac	0.964	0.786	0.804	1e-142
356574997	414	PREDICTED: macrophage erythroblast attac	0.967	0.785	0.792	1e-140
255568187	414	erythroblast macrophage protein emp, put	0.967	0.785	0.772	1e-140
449451687	469	PREDICTED: macrophage erythroblast attac	0.976	0.699	0.765	1e-137
357445017	873	Macrophage erythroblast attacher [Medica	0.955	0.367	0.754	1e-135
297816802	418	hypothetical protein ARALYDRAFT_485927 [	0.973	0.782	0.691	1e-132
145332851	323	LisH/CRA/RING-U-box domain-containing pr	0.952	0.990	0.694	1e-131
15233170	418	LisH/CRA/RING-U-box domain-containing pr	0.973	0.782	0.685	1e-130

>gi|356536518|ref|XP_003536784.1| PREDICTED: macrophage erythroblast attacher-like [Glycine max]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 289/328 (88%), Gaps = 2/328 (0%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           MEMDSLPNGN+ + +P  + T  A     P   L QLTE+LKLEHQFLRVPFE+YKKT+R
Sbjct: 1   MEMDSLPNGNNTSGTP-ISATATANPAQPPSSNLPQLTESLKLEHQFLRVPFEYYKKTLR 59

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
            NHRAVEKE+++VIS V + + + + S DDAVNHL SLVSRLQGLKRKLEEGSR EHLQA
Sbjct: 60  ANHRAVEKEMSAVISGVNEAA-ATDLSPDDAVNHLNSLVSRLQGLKRKLEEGSRAEHLQA 118

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           QKCR RL+HLESADAEN++EWNNTR+KRILVDYMLRMSYY+TA KLAESSN+QDLVDI+V
Sbjct: 119 QKCRVRLDHLESADAENMSEWNNTRMKRILVDYMLRMSYYDTAVKLAESSNLQDLVDIDV 178

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAIT 240
           FQEAKKVIDALQNK+VAPALAWC+DNKSRLKKSKSK EFQLRLQEFIELVR ENNLRAIT
Sbjct: 179 FQEAKKVIDALQNKDVAPALAWCADNKSRLKKSKSKLEFQLRLQEFIELVRAENNLRAIT 238

Query: 241 YARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYG 300
           YARKYLAPWGATHMKELQRV+ATLAFK +TEC TYK LFE KQWD+LVDQFKQEFCKLYG
Sbjct: 239 YARKYLAPWGATHMKELQRVIATLAFKRDTECATYKVLFEAKQWDYLVDQFKQEFCKLYG 298

Query: 301 MTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           MTLEPLLNIYLQAGLSAL TPY Y   C
Sbjct: 299 MTLEPLLNIYLQAGLSALKTPYCYEDDC 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098160|ref|XP_002311128.1| predicted protein [Populus trichocarpa] gi|222850948|gb|EEE88495.1| predicted protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/328 (76%), Positives = 284/328 (86%), Gaps = 4/328 (1%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           MEMDSLPNGNS   +     T  +    +   KLTQLTE+LKLEHQFLRVPFEHYKKTIR
Sbjct: 1   MEMDSLPNGNSTIPTTIIPTTTPSTALSS---KLTQLTESLKLEHQFLRVPFEHYKKTIR 57

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
           TNHRAVEKE++SVIS V D +DS + S DDAV HLTSLVSRLQGLKRKLEEGSRTE+LQA
Sbjct: 58  TNHRAVEKEVSSVISVVNDAADS-DISNDDAVQHLTSLVSRLQGLKRKLEEGSRTENLQA 116

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           Q+CRAR++HLESADAENL+EWNN R+KRILVDYMLRMSYY+T  KLAESS++ DLVDI+V
Sbjct: 117 QRCRARIDHLESADAENLSEWNNMRMKRILVDYMLRMSYYDTGLKLAESSDMLDLVDIDV 176

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAIT 240
           F E+K+VIDALQ +EVAPALAWC+DNK+RLKKSKSKFEFQLRLQE++ELVR E++LRAIT
Sbjct: 177 FLESKRVIDALQKREVAPALAWCADNKTRLKKSKSKFEFQLRLQEYVELVRAEDHLRAIT 236

Query: 241 YARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYG 300
           YARKYLAPW ATHMKE+QRV A +AFKSN EC  YK  FEPKQWD+LV+QFKQEFC+LYG
Sbjct: 237 YARKYLAPWAATHMKEMQRVFAIVAFKSNPECAVYKVFFEPKQWDYLVEQFKQEFCRLYG 296

Query: 301 MTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           MTLEPLLNI+LQAGLSAL TPY Y   C
Sbjct: 297 MTLEPLLNIFLQAGLSALKTPYCYEDDC 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448765|ref|XP_002281688.1| PREDICTED: macrophage erythroblast attacher [Vitis vinifera] gi|297736449|emb|CBI25320.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/328 (80%), Positives = 290/328 (88%), Gaps = 4/328 (1%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           MEM+SLPNGNS AA        AAA    P  K  QL E+LKLEHQFLRVPFEH+KK+IR
Sbjct: 1   MEMESLPNGNSVAAV---VAAAAAAAAAAPSSKFNQLAESLKLEHQFLRVPFEHFKKSIR 57

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
            NHR VEKE+++VIS VAD ++++  S D+AV+HL SLVSRLQGLKRKLEEGSRTEHLQA
Sbjct: 58  ANHRIVEKEMSAVISGVADAANAD-LSGDEAVHHLNSLVSRLQGLKRKLEEGSRTEHLQA 116

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           QKCRARL+HLESADA+NL+EWNNTR+KRILVDYMLRMSYY+TA KL ESSN+QDLVDIEV
Sbjct: 117 QKCRARLDHLESADADNLSEWNNTRLKRILVDYMLRMSYYDTAMKLVESSNLQDLVDIEV 176

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAIT 240
           F EAK+VIDALQNKEVAPALAWC++NKSRLKKSKSKFEFQLRLQEFIELVR ENNLRAI 
Sbjct: 177 FHEAKRVIDALQNKEVAPALAWCAENKSRLKKSKSKFEFQLRLQEFIELVRAENNLRAIA 236

Query: 241 YARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYG 300
           YARK+LAPWGAT+MKELQRVMATLAFKSNTEC TYK LFEPKQWD+LVDQFKQEFC+LYG
Sbjct: 237 YARKHLAPWGATNMKELQRVMATLAFKSNTECATYKVLFEPKQWDYLVDQFKQEFCRLYG 296

Query: 301 MTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           MTLEPLLNIYLQAGLSAL TPY Y   C
Sbjct: 297 MTLEPLLNIYLQAGLSALKTPYCYQDDC 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574997|ref|XP_003555629.1| PREDICTED: macrophage erythroblast attacher-like [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/327 (79%), Positives = 283/327 (86%), Gaps = 2/327 (0%)

Query: 3   MDSLPNGN-SAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRT 61
           MDSLPNGN +A        T  A         L QLTE+LKLEHQFLRVPFEHYKKT+R 
Sbjct: 1   MDSLPNGNNTAGTPISATATATANPAPPQSSNLPQLTESLKLEHQFLRVPFEHYKKTLRA 60

Query: 62  NHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQ 121
           NHRAVEKE+++VIS V + + + + S DDAVNHL SLV RLQGLKRKLEEGSR EHLQAQ
Sbjct: 61  NHRAVEKEMSAVISGVTEAA-AADLSPDDAVNHLNSLVCRLQGLKRKLEEGSRAEHLQAQ 119

Query: 122 KCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVF 181
           KCR RL+HLESADAEN++EWNNTR+KRILVDYMLRMSYY+TA KLA+SSN+QDLVDI+VF
Sbjct: 120 KCRVRLDHLESADAENMSEWNNTRMKRILVDYMLRMSYYDTAVKLAKSSNLQDLVDIDVF 179

Query: 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITY 241
           QEAKKVIDALQNK+VAPALAWC+DNKSRLKKSKSK EFQLRLQEFIELVR ENNLRAITY
Sbjct: 180 QEAKKVIDALQNKDVAPALAWCADNKSRLKKSKSKMEFQLRLQEFIELVRAENNLRAITY 239

Query: 242 ARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLYGM 301
           ARKYLAPWGATHMKELQRV+ATLAFK +TEC+TYK LFE KQWD+LVDQFKQEFCKLYGM
Sbjct: 240 ARKYLAPWGATHMKELQRVIATLAFKRDTECSTYKVLFEAKQWDYLVDQFKQEFCKLYGM 299

Query: 302 TLEPLLNIYLQAGLSALNTPYPYSVIC 328
           TLEPLLNIYLQAGLSAL TPY Y   C
Sbjct: 300 TLEPLLNIYLQAGLSALKTPYCYEDDC 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568187|ref|XP_002525069.1| erythroblast macrophage protein emp, putative [Ricinus communis] gi|223535650|gb|EEF37316.1| erythroblast macrophage protein emp, putative [Ricinus communis]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/329 (77%), Positives = 288/329 (87%), Gaps = 4/329 (1%)

Query: 1   MEMDSLPNGNSAAA-SPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTI 59
           MEMDSLPNGNS  + +   NP+PA+          ++LTE+LKLEHQFLRVPFEHYKKTI
Sbjct: 1   MEMDSLPNGNSTPSITTLTNPSPASTTATAAIS--SKLTESLKLEHQFLRVPFEHYKKTI 58

Query: 60  RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ 119
           R NHRAVEKE++SVIS V+DV+D +  SK  AV HLT+LVS+LQGLKRKLEEGS+TE+LQ
Sbjct: 59  RANHRAVEKEVSSVISGVSDVADLD-VSKHYAVQHLTNLVSKLQGLKRKLEEGSKTENLQ 117

Query: 120 AQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIE 179
           AQ+CRARL+HLES D ENL+EWNNTR+KRILVDYMLRMSYY+T  KLAESSN+ DLVDI+
Sbjct: 118 AQRCRARLDHLESIDVENLSEWNNTRLKRILVDYMLRMSYYDTGMKLAESSNMMDLVDID 177

Query: 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAI 239
           VFQEA++VIDALQN+EVAPALAWC+DNKSRLKKSKSKFEFQLRLQEFIELVR ENN+RAI
Sbjct: 178 VFQEARRVIDALQNREVAPALAWCADNKSRLKKSKSKFEFQLRLQEFIELVRAENNMRAI 237

Query: 240 TYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY 299
            Y+RKYLAPWGAT+MKELQ+VMATLAFKS+TEC  YK LFE KQWD+LVDQFKQEFC+LY
Sbjct: 238 AYSRKYLAPWGATYMKELQQVMATLAFKSHTECVKYKVLFEAKQWDYLVDQFKQEFCRLY 297

Query: 300 GMTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           GMTLEPLLNIYL AGLSAL TPY Y   C
Sbjct: 298 GMTLEPLLNIYLHAGLSALKTPYCYEDDC 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451687|ref|XP_004143593.1| PREDICTED: macrophage erythroblast attacher-like [Cucumis sativus]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/329 (76%), Positives = 282/329 (85%), Gaps = 1/329 (0%)

Query: 1   MEMDSLPNGNSA-AASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTI 59
           ME+DS+PNG++   A P      AAA         T L E+LKLEHQFLRVPFEHYKK I
Sbjct: 53  MEVDSIPNGSATETAMPNATAAAAAAPITPAPSNFTGLAESLKLEHQFLRVPFEHYKKAI 112

Query: 60  RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ 119
           R NHR  EKE+++VIS+V + +D +N S ++AV+H  SLVSRLQGLKRKLEEGSRTE +Q
Sbjct: 113 RANHRVAEKEVSAVISSVTEAADRDNMSTEEAVHHFNSLVSRLQGLKRKLEEGSRTEQMQ 172

Query: 120 AQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIE 179
           AQKCRARL HLESADA+NLAEWN+TR+KRILVDYMLRMSY+ETA KL+ESSNIQDLVDI+
Sbjct: 173 AQKCRARLVHLESADADNLAEWNSTRLKRILVDYMLRMSYFETAMKLSESSNIQDLVDID 232

Query: 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAI 239
           VFQEAK+VIDALQNKE+APALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRG+ N++AI
Sbjct: 233 VFQEAKRVIDALQNKEIAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGDKNMQAI 292

Query: 240 TYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY 299
            YARKYLAPWGATHMKELQRVMATLAFKS+TEC  YK LFEPKQWD LVD F+QEFCK+Y
Sbjct: 293 AYARKYLAPWGATHMKELQRVMATLAFKSSTECAVYKVLFEPKQWDHLVDVFRQEFCKIY 352

Query: 300 GMTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           GMTLEPLLNIYLQAGLSAL TPY Y   C
Sbjct: 353 GMTLEPLLNIYLQAGLSALKTPYCYENDC 381

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445017|ref|XP_003592786.1| Macrophage erythroblast attacher [Medicago truncatula] gi|355481834|gb|AES63037.1| Macrophage erythroblast attacher [Medicago truncatula]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/334 (75%), Positives = 278/334 (83%), Gaps = 13/334 (3%)

Query: 1   MEMDSLPNGNSAAASPPQ------NPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEH 54
           MEMDS+PNGN+ AA          NPTPA      P   L +LTE+LKLEHQFLRVPFEH
Sbjct: 459 MEMDSIPNGNNTAAGAQIGAIAAVNPTPA------PSSNLPRLTESLKLEHQFLRVPFEH 512

Query: 55  YKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSR 114
           YKKTIR NHR VEKE+++VIS V+D + S+  S DDAVNHL SLVSRLQGLKRKLEEG+R
Sbjct: 513 YKKTIRANHRVVEKEMSAVISGVSDAAGSD-LSPDDAVNHLNSLVSRLQGLKRKLEEGNR 571

Query: 115 TEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQD 174
            E+LQAQKCR R+ HLESA+AEN++EWN TR+KRILVDYMLRMSYY+TAEKLAE SN+QD
Sbjct: 572 AENLQAQKCRVRIEHLESAEAENMSEWNTTRLKRILVDYMLRMSYYDTAEKLAECSNLQD 631

Query: 175 LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGEN 234
           LVDI+VFQEAK VIDALQNK+ APALAWC+DNKSRLKKSKSK EFQLRLQEFIELVR E+
Sbjct: 632 LVDIDVFQEAKTVIDALQNKDAAPALAWCADNKSRLKKSKSKLEFQLRLQEFIELVRTES 691

Query: 235 NLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQE 294
           NLRAI YA+KYLAPW   HMKELQ V A LAFK +T CT YK LFEPKQWD+LVD FKQE
Sbjct: 692 NLRAIAYAKKYLAPWAGNHMKELQEVTALLAFKRDTPCTKYKVLFEPKQWDYLVDHFKQE 751

Query: 295 FCKLYGMTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           FCKLYGMTLEPLLNIYLQAGLSAL TPY Y   C
Sbjct: 752 FCKLYGMTLEPLLNIYLQAGLSALKTPYCYEDDC 785

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816802|ref|XP_002876284.1| hypothetical protein ARALYDRAFT_485927 [Arabidopsis lyrata subsp. lyrata] gi|297322122|gb|EFH52543.1| hypothetical protein ARALYDRAFT_485927 [Arabidopsis lyrata subsp. lyrata]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/331 (69%), Positives = 274/331 (82%), Gaps = 4/331 (1%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           ME+DS  NGNS A       T   +  + P  +  Q TE+LKLEHQ LRVPFEHYKKTIR
Sbjct: 1   MEIDSATNGNSDAVMTESTATITPSPVVVPSSRSNQFTESLKLEHQLLRVPFEHYKKTIR 60

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
           TNHR+ EKE++++++ V +++DS+ +SKD  V+ LTSLV+RLQGLKRKLEEGS  E+LQA
Sbjct: 61  TNHRSFEKEVSTIVNGVGELADSD-WSKDVTVSRLTSLVTRLQGLKRKLEEGSNVENLQA 119

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           Q+CRAR++HL+S D EN+ EWNNT++KRILVDYMLRMSY+ETA KL+ESSNI DLVDI++
Sbjct: 120 QRCRARIDHLDSVDVENITEWNNTKLKRILVDYMLRMSYFETATKLSESSNILDLVDIDI 179

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR---GENNLR 237
           F+EAKKVIDAL+N+EVA ALAWC+DNK+RLKKSKSKFEFQLRLQEFIELVR    ++  +
Sbjct: 180 FREAKKVIDALKNREVASALAWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTADSYQK 239

Query: 238 AITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCK 297
           AI YARK+LA WGATHM ELQ V+ATLAFKS TEC  YK LFEP+QW+ LVDQFKQEFCK
Sbjct: 240 AIQYARKHLASWGATHMNELQHVLATLAFKSTTECLKYKVLFEPQQWNILVDQFKQEFCK 299

Query: 298 LYGMTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           LYGMT+EPLLNIYLQAGLSAL TPY +   C
Sbjct: 300 LYGMTMEPLLNIYLQAGLSALKTPYGFEEGC 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332851|ref|NP_001078291.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] gi|332645815|gb|AEE79336.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/324 (69%), Positives = 268/324 (82%), Gaps = 4/324 (1%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           ME+DS  NGNS         T   +  +    +  Q TE+LKLEHQ LRVPFEHYKKTIR
Sbjct: 1   MEIDSATNGNSDTVMTESAATITPSPVVVSSSRSNQFTESLKLEHQLLRVPFEHYKKTIR 60

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
           TNHR+ EKE++++++ V +++DS ++SKDD V+ LT LV+RLQGLKRKLEEGS  E+LQA
Sbjct: 61  TNHRSFEKEVSTIVNGVGELADS-DWSKDDTVSRLTCLVTRLQGLKRKLEEGSNVENLQA 119

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           Q+CRAR++HL+S D EN+ EWNNT++KRILVDYMLRMSY+ETA KL+ESSNI DLVDI++
Sbjct: 120 QRCRARIDHLDSVDVENITEWNNTKLKRILVDYMLRMSYFETATKLSESSNIMDLVDIDI 179

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR---GENNLR 237
           F+EAKKVIDAL+N+EVA AL WC+DNK+RLKKSKSKFEFQLRLQEFIELVR    E+  +
Sbjct: 180 FREAKKVIDALKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKK 239

Query: 238 AITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCK 297
           AI YARK+LA WG THMKELQ V+ATLAFKS TEC+ YK LFE +QWD LVDQFKQEFCK
Sbjct: 240 AIQYARKHLASWGTTHMKELQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQFKQEFCK 299

Query: 298 LYGMTLEPLLNIYLQAGLSALNTP 321
           LYGMT+EPLLNIYLQAGLSAL TP
Sbjct: 300 LYGMTMEPLLNIYLQAGLSALKTP 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233170|ref|NP_191067.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] gi|7329637|emb|CAB82702.1| putative protein [Arabidopsis thaliana] gi|111074420|gb|ABH04583.1| At3g55070 [Arabidopsis thaliana] gi|332645814|gb|AEE79335.1| LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/331 (68%), Positives = 270/331 (81%), Gaps = 4/331 (1%)

Query: 1   MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
           ME+DS  NGNS         T   +  +    +  Q TE+LKLEHQ LRVPFEHYKKTIR
Sbjct: 1   MEIDSATNGNSDTVMTESAATITPSPVVVSSSRSNQFTESLKLEHQLLRVPFEHYKKTIR 60

Query: 61  TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
           TNHR+ EKE++++++ V +++DS ++SKDD V+ LT LV+RLQGLKRKLEEGS  E+LQA
Sbjct: 61  TNHRSFEKEVSTIVNGVGELADS-DWSKDDTVSRLTCLVTRLQGLKRKLEEGSNVENLQA 119

Query: 121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
           Q+CRAR++HL+S D EN+ EWNNT++KRILVDYMLRMSY+ETA KL+ESSNI DLVDI++
Sbjct: 120 QRCRARIDHLDSVDVENITEWNNTKLKRILVDYMLRMSYFETATKLSESSNIMDLVDIDI 179

Query: 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR---GENNLR 237
           F+EAKKVIDAL+N+EVA AL WC+DNK+RLKKSKSKFEFQLRLQEFIELVR    E+  +
Sbjct: 180 FREAKKVIDALKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKK 239

Query: 238 AITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCK 297
           AI YARK+LA WG THMKELQ V+ATLAFKS TEC+ YK LFE +QWD LVDQFKQEFCK
Sbjct: 240 AIQYARKHLASWGTTHMKELQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQFKQEFCK 299

Query: 298 LYGMTLEPLLNIYLQAGLSALNTPYPYSVIC 328
           LYGMT+EPLLNIYLQAGLSAL TPY     C
Sbjct: 300 LYGMTMEPLLNIYLQAGLSALKTPYGLEEGC 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2097248	418	AT3G55070 "AT3G55070" [Arabido	0.955	0.767	0.695	3.7e-119
DICTYBASE|DDB_G0284463	423	maea "CT11-RanBPM domain-conta	0.833	0.661	0.433	2.1e-61
ZFIN|ZDB-GENE-030131-294	396	maea "macrophage erythroblast	0.860	0.729	0.396	1.7e-52
UNIPROTKB|Q5F398	396	MAEA "Macrophage erythroblast	0.860	0.729	0.396	1.5e-51
MGI|MGI:1891748	396	Maea "macrophage erythroblast	0.860	0.729	0.396	1.5e-51
RGD|1309877	396	Maea "macrophage erythroblast	0.860	0.729	0.396	1.5e-51
UNIPROTKB|Q7L5Y9	396	MAEA "Macrophage erythroblast	0.860	0.729	0.389	6.5e-51
UNIPROTKB|Q3MHJ2	434	MAEA "Macrophage erythroblast	0.538	0.417	0.390	6e-50
UNIPROTKB|E7ESC7	434	MAEA "Macrophage erythroblast	0.538	0.417	0.390	1.6e-49
UNIPROTKB|B4DVN3	395	MAEA "cDNA FLJ54556, highly si	0.818	0.696	0.389	6.7e-49

TAIR|locus:2097248 AT3G55070 "AT3G55070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 226/325 (69%), Positives = 269/325 (82%)

Query:     1 MEMDSLPNGNSAAASPPQNPTPAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIR 60
             ME+DS  NGNS         T   +  +    +  Q TE+LKLEHQ LRVPFEHYKKTIR
Sbjct:     1 MEIDSATNGNSDTVMTESAATITPSPVVVSSSRSNQFTESLKLEHQLLRVPFEHYKKTIR 60

Query:    61 TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQA 120
             TNHR+ EKE++++++ V +++DS+ +SKDD V+ LT LV+RLQGLKRKLEEGS  E+LQA
Sbjct:    61 TNHRSFEKEVSTIVNGVGELADSD-WSKDDTVSRLTCLVTRLQGLKRKLEEGSNVENLQA 119

Query:   121 QKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV 180
             Q+CRAR++HL+S D EN+ EWNNT++KRILVDYMLRMSY+ETA KL+ESSNI DLVDI++
Sbjct:   120 QRCRARIDHLDSVDVENITEWNNTKLKRILVDYMLRMSYFETATKLSESSNIMDLVDIDI 179

Query:   181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR---GENNLR 237
             F+EAKKVIDAL+N+EVA AL WC+DNK+RLKKSKSKFEFQLRLQEFIELVR    E+  +
Sbjct:   180 FREAKKVIDALKNREVASALTWCADNKTRLKKSKSKFEFQLRLQEFIELVRVDTAESYKK 239

Query:   238 AITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCK 297
             AI YARK+LA WG THMKELQ V+ATLAFKS TEC+ YK LFE +QWD LVDQFKQEFCK
Sbjct:   240 AIQYARKHLASWGTTHMKELQHVLATLAFKSTTECSKYKVLFELRQWDVLVDQFKQEFCK 299

Query:   298 LYGMTLEPLLNIYLQAGLSALNTPY 322
             LYGMT+EPLLNIYLQAGLSAL TPY
Sbjct:   300 LYGMTMEPLLNIYLQAGLSALKTPY 324

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0284463 maea "CT11-RanBPM domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 124/286 (43%), Positives = 192/286 (67%)

Query:    41 LKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLV 99
             ++LE   L+VPFE   K+ R + +++EKE+ +VI+ + +++      SKDDA+N +  L+
Sbjct:    42 IQLERSLLKVPFECINKSFRISQKSIEKEMNNVITQITEINKKRLTISKDDAINTVDKLL 101

Query:   100 SRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESA-DAENLAE----WNNTRVKRILVDYM 154
             +R+Q LKRK+E+    E  Q +K ++RL+HL  A + +N  +    +NNTR+ RIL+DY 
Sbjct:   102 NRVQQLKRKMEDVKLEEEQQIKKLKSRLSHLNIATNCQNQKDHREIFNNTRINRILIDYF 161

Query:   155 LRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK 214
             LR  YY++A + +    I+D VDIE+F  +KKV++ L   +   AL WC++NKS+LKK  
Sbjct:   162 LREGYYDSAIEFSNQLKIKDFVDIEIFLSSKKVVEGLNKFDCTEALNWCNENKSKLKKIN 221

Query:   215 SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTT 274
             S  EF LR+QEFIELVR    ++AI YA+ +++P  +T+MKE+QRV ATL FK +T C  
Sbjct:   222 STLEFNLRIQEFIELVRLGKMMQAIAYAKVHISPNSSTNMKEIQRVAATLVFKKDTTCDR 281

Query:   275 YKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNT 320
             YK LF+ K+W  L+ QFK +  +L+ ++ + +L+I LQ+GLS L T
Sbjct:   282 YKKLFDSKKWSELICQFKNDNFQLHSLSTKSMLDISLQSGLSVLKT 327

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-294 maea "macrophage erythroblast attacher" [Danio rerio (taxid:7955)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 117/295 (39%), Positives = 179/295 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-ENFSK-DDAV 92
             QL+ ALK+ E+  L+VP+E   K  R   + +++E + V   VA++  +  +F   D  V
Sbjct:     9 QLSMALKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSFPVVDTVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAE---WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+   ++  A    W   R+ R+
Sbjct:    69 SLLDGVVEKLSALKRKAAESIQAEDESAKLCKRRIEHLKEHSSDQPASVNVWKKKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERQETATCLAWCHDNKSR 188

Query:   210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
             L+K KS  EF LR+QEFIEL+R    + A+ +ARK+ +      + E+++VM  LAF S+
Sbjct:   189 LRKMKSCLEFSLRIQEFIELIRQNKRMDAVRHARKHFSQAEGGQLDEVRQVMGMLAFPSD 248

Query:   270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
             T  + YK L +P +W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP  Y
Sbjct:   249 THISPYKDLLDPARWKMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCY 303

GO:0051301 "cell division" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

UNIPROTKB|Q5F398 MAEA "Macrophage erythroblast attacher" [Gallus gallus (taxid:9031)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 117/295 (39%), Positives = 179/295 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAANMWKKKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E    LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERQETMTCLAWCHDNKSR 188

Query:   210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
             L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++VM  LAF S+
Sbjct:   189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPSD 248

Query:   270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
             T  + YK L +P +W  L+ QF+ +  +L+ +    +  I LQAGLSA+ TP  Y
Sbjct:   249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTITLQAGLSAIKTPQCY 303

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

MGI|MGI:1891748 Maea "macrophage erythroblast attacher" [Mus musculus (taxid:10090)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 117/295 (39%), Positives = 179/295 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASMWKRKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query:   210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
             L+K KS  EF LR+QEFIELVR    L A+ +ARK+ +    + + E+++VM  LAF  +
Sbjct:   189 LRKMKSCLEFSLRIQEFIELVRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPPD 248

Query:   270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
             T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct:   249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNSSVFTLTLQAGLSAIKTPQCY 303

GO:0003779 "actin binding" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=ISO

GO:0005826 "actomyosin contractile ring" evidence=ISO

GO:0005856 "cytoskeleton" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007155 "cell adhesion" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0033033 "negative regulation of myeloid cell apoptotic process" evidence=ISO

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IMP

GO:0048822 "enucleate erythrocyte development" evidence=IMP

GO:0051301 "cell division" evidence=IEA

RGD|1309877 Maea "macrophage erythroblast attacher" [Rattus norvegicus (taxid:10116)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 117/295 (39%), Positives = 179/295 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSSCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASMWKRKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query:   210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
             L+K KS  EF LR+QEFIELVR    L A+ +ARK+ +    + + E+++VM  LAF  +
Sbjct:   189 LRKMKSCLEFSLRIQEFIELVRQNKRLDAVRHARKHFSQAEGSQLDEVRQVMGMLAFPPD 248

Query:   270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
             T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct:   249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNSSVFTLTLQAGLSAIKTPQCY 303

GO:0003779 "actin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005819 "spindle" evidence=IEA;ISO

GO:0005826 "actomyosin contractile ring" evidence=IEA;ISO

GO:0005856 "cytoskeleton" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA;ISO

GO:0007010 "cytoskeleton organization" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0033033 "negative regulation of myeloid cell apoptotic process" evidence=IEA;ISO

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0048821 "erythrocyte development" evidence=ISO

GO:0048822 "enucleate erythrocyte development" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q7L5Y9 MAEA "Macrophage erythroblast attacher" [Homo sapiens (taxid:9606)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 115/295 (38%), Positives = 178/295 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query:   210 LKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269
             L+K KS  EF LR+QEFIEL+R    L A+ +ARK+ +    + + E+++ M  LAF  +
Sbjct:   189 LRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPD 248

Query:   270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
             T  + YK L +P +W  L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct:   249 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCY 303

GO:0007049 "cell cycle" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0048822 "enucleate erythrocyte development" evidence=IEA

GO:0003779 "actin binding" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=NAS

GO:0033033 "negative regulation of myeloid cell apoptotic process" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q3MHJ2 MAEA "Macrophage erythroblast attacher" [Bos taurus (taxid:9913)]

 Score = 322 (118.4 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 73/187 (39%), Positives = 113/187 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query:   210 LKKSKSK 216
             L+K K +
Sbjct:   189 LRKMKGR 195

GO:0016363 "nuclear matrix" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0043249 "erythrocyte maturation" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E7ESC7 MAEA "Macrophage erythroblast attacher" [Homo sapiens (taxid:9606)]

 Score = 322 (118.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 73/187 (39%), Positives = 113/187 (60%)

Query:    36 QLTEALKL-EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAV 92
             QL+  LK+ E+  L+VP+E   K  R   + +++E + V   VA++  + +   + D  V
Sbjct:     9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVV 68

Query:    93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRI 149
             + L  +V +L  LKRK  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R+
Sbjct:    69 SLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRM 128

Query:   150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR 209
             +V+++LR  YY TA KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSR
Sbjct:   129 MVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSR 188

Query:   210 LKKSKSK 216
             L+K K +
Sbjct:   189 LRKMKGR 195

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|B4DVN3 MAEA "cDNA FLJ54556, highly similar to Homo sapiens macrophage erythroblast attacher (MAEA), transcript variant 1, mRNA" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 109/280 (38%), Positives = 168/280 (60%)

Query:    50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENF--SKDDAVNHLTSLVSRLQGLKR 107
             VP+E   K  R   + +++E + V   VA++  + +   + D  V+ L  +V +L  LKR
Sbjct:    23 VPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVVSLLDGVVEKLSVLKR 82

Query:   108 KLEEGSRTEHLQAQKCRARLNHLE--SADAENLAE-WNNTRVKRILVDYMLRMSYYETAE 164
             K  E  + E   A+ C+ R+ HL+  S+D    A  W   R+ R++V+++LR  YY TA 
Sbjct:    83 KAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMVEHLLRCGYYNTAV 142

Query:   165 KLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224
             KLA  S I+DLV+IE+F  AK+V ++L+ +E A  LAWC DNKSRL+K KS  EF LR+Q
Sbjct:   143 KLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQ 202

Query:   225 EFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQW 284
             EFIEL+R    L A+ +ARK+ +    + + E+++ M  LAF  +T  + YK L +P +W
Sbjct:   203 EFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARW 262

Query:   285 DFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPY 324
               L+ QF+ +  +L+ +    +  + LQAGLSA+ TP  Y
Sbjct:   263 RMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCY 302

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080412 hypothetical protein (412 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	4e-55
smart00757	99	smart00757, CRA, CT11-RanBPM	2e-20
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	3e-11
COG5109	396	COG5109, COG5109, Uncharacterized conserved protei	5e-04

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  176 bits (449), Expect = 4e-55
 Identities = 63/144 (43%), Positives = 92/144 (63%), Gaps = 1/144 (0%)

Query: 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAI 239
           VF+E  K+ ++L N ++  AL WC++NK  L K  S  EF+LRLQ+FIEL+R    L A+
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 240 TYARKYLA-PWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKL 298
            YAR+ LA  +   H+KE+Q++M  LAF   T+ + YK+L  P +W+ L ++F +   KL
Sbjct: 61  EYARENLAPFFNEQHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILKL 120

Query: 299 YGMTLEPLLNIYLQAGLSALNTPY 322
            G++ E  L I L+AGLSAL T  
Sbjct: 121 LGLSSESPLEILLKAGLSALKTLL 144

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 83.9 bits (208), Expect = 2e-20
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 237 RAITYARKYLAPWGATH---MKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQ 293
            A+ YAR+ LAP+   H   +KEL++ MA LA+   TE + YK L  P Q + L ++   
Sbjct: 5   EALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNS 64

Query: 294 EFCKLY-GMTLEPLLNIYLQAGLSALNTP 321
              +L  G + E  L I L AGL+AL T 
Sbjct: 65  AILELLHGKSSESPLEILLSAGLAALKTL 93

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGEN 234
            F E K++ + +   +   AL W S  K  L +  SK EF+LR Q+F+ELVR   
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGK 55

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|227440 COG5109, COG5109, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 24/163 (14%)

Query: 179 EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNL-R 237
           + F + KKVI  +  K     + +    +  L K  ++ E +L L     L+        
Sbjct: 137 DGFVKLKKVISGISEKSTFLLIEF-LQIEGYLSKGDTESELELYLVSHESLLLIHKRYDE 195

Query: 238 AITYARKYLAPWGATHMKELQRVMATLAFKSNTECT--------------TYKALFEP-- 281
           A+      LA +   H+++++ ++  L                           + +P  
Sbjct: 196 ALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIE 255

Query: 282 ------KQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSAL 318
                 K    L++ FK E+C   GM     L   ++ G  A 
Sbjct: 256 DIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAF 298

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
KOG0396	389	consensus Uncharacterized conserved protein [Funct	100.0
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	100.0
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.94
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.75
COG5109	396	Uncharacterized conserved protein, contains RING Z	99.46
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.35
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.86
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.74
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.61
KOG1477	469	consensus SPRY domain-containing proteins [General	95.72
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	86.81
PF04136	157	Sec34: Sec34-like family ; InterPro: IPR007265 Sec	85.5
KOG1333	241	consensus Uncharacterized conserved protein [Funct	85.32
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	82.75

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-70  Score=514.81  Aligned_cols=298  Identities=39%  Similarity=0.655  Sum_probs=284.8

Q ss_pred             chhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCChHHHHHHHHHHHHHHHHHHHHHhhh
Q 019785           37 LTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS----ENFSKDDAVNHLTSLVSRLQGLKRKLEEG  112 (336)
Q Consensus        37 ~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~----~~~~~~~~~~~ld~li~kl~~lkrkl~~~  112 (336)
                      ++|++++||++||||||.++|+||+.||.|+||+++|...++++.+.    ...+.+.+++.+|.||.+++.+||++++.
T Consensus         1 ~~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~   80 (389)
T KOG0396|consen    1 MTFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEY   80 (389)
T ss_pred             CcchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999773    13458999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhh---ccCc-chhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 019785          113 SRTEHLQAQKCRARLNHLE---SADA-ENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVI  188 (336)
Q Consensus       113 ~~~e~~~~~~~~~Rl~~L~---~~~~-~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~  188 (336)
                      ++.|.+.+++|++||+|+.   +.+. .+...|+++++||+|+|||+|+||+++|..|.++++|++++|+|+|.+++.|+
T Consensus        81 iq~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~  160 (389)
T KOG0396|consen   81 IQSEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIR  160 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHH
Confidence            9999999999999999999   3344 67889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccC
Q 019785          189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKS  268 (336)
Q Consensus       189 ~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~  268 (336)
                      ++|+.|++.|||.||++|+..|+|.+|.|||++|+|+|||||+.+++.+||+|||+||.||+.++.++++.+||+|||++
T Consensus       161 ~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~  240 (389)
T KOG0396|consen  161 DSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPK  240 (389)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCcccC---CCCccccc
Q 019785          269 NTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSV---ICEYFCWL  334 (336)
Q Consensus       269 ~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~~---~~~~~~~~  334 (336)
                      .+.+++|..+++++||+.|+++|.++++++||+|.+|+|.+.+++|+|++|||.|+.+   .+.+.|||
T Consensus       241 ~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~Cpv  309 (389)
T KOG0396|consen  241 YTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPNNCPV  309 (389)
T ss_pred             ccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999987   45566776

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-35  Score=277.38  Aligned_cols=181  Identities=30%  Similarity=0.599  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc--ccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785          144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDL--VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL  221 (336)
Q Consensus       144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~--~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L  221 (336)
                      +.||.+|+.||+|+|+.|+|+.|++|+|+...  .-...|.++++|.++|+.||+++||+|+..|+.+|...+|.|||.|
T Consensus       117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~L  196 (394)
T KOG2817|consen  117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKL  196 (394)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHH
Confidence            44799999999999999999999999999754  3468899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCChH--HHHHHHHHhccchhhhcHHHHHHHHHHhcccCC-CCCCchhhhcCcccHHHHHHHHHHHHHHH
Q 019785          222 RLQEFIELVRGENNL--RAITYARKYLAPWGATHMKELQRVMATLAFKSN-TECTTYKALFEPKQWDFLVDQFKQEFCKL  298 (336)
Q Consensus       222 r~q~fIELir~~~~~--eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~-~~~~~y~~L~~~~rw~~L~~~F~~~~~~l  298 (336)
                      |.++|+++++.|+-.  +||.|||+|++||+..+..|||.+|++|.|... .+.+||.+++++..|.++++.|.++||.+
T Consensus       197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycal  276 (394)
T KOG2817|consen  197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCAL  276 (394)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHH
Confidence            999999999998655  999999999999999999999999999999766 56799999999999999999999999999


Q ss_pred             hCCCCCchhHHHHHhchhccCCCCcc
Q 019785          299 YGMTLEPLLNIYLQAGLSALNTPYPY  324 (336)
Q Consensus       299 ~gl~~~s~L~~~l~aGlsaLkt~~C~  324 (336)
                      +|+|.+|||.+++.||++||++...|
T Consensus       277 lg~s~eSPL~v~v~aG~~Alp~Llk~  302 (394)
T KOG2817|consen  277 LGISVESPLSVLVNAGCIALPQLLKY  302 (394)
T ss_pred             cCCCccCcHHHHHHhhHHHHHHHHHH
Confidence            99999999999999999998876544

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=100.00  E-value=2.6e-33  Score=239.21  Aligned_cols=141  Identities=40%  Similarity=0.682  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHH
Q 019785          181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRV  260 (336)
Q Consensus       181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~  260 (336)
                      |.++++|+++|++||+++|++||++|+|.|.+.++.|+|.|++|+|||||+.|+..+||+|||+++.|+...+.++++++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~   81 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL   81 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999988877789999999


Q ss_pred             HHHhcccCCCC--CCchhhhcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCC
Q 019785          261 MATLAFKSNTE--CTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTP  321 (336)
Q Consensus       261 m~lLaf~~~~~--~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~  321 (336)
                      |++|+|.++..  ++||++++++++|+.|++.|++++|+.+|+|.+|||+.++++|++++||.
T Consensus        82 ~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   82 MSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999876  68999999999999999999999999999999999999999999999986

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.94  E-value=2.7e-26  Score=206.55  Aligned_cols=174  Identities=22%  Similarity=0.367  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785          143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL  221 (336)
Q Consensus       143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~-~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L  221 (336)
                      +..+|++|++||..+||.++|+.|++++|+.. .+|.+.+.++.+|+.+|+.|++..|++.+++..|.+...+..|.|.|
T Consensus        26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L  105 (228)
T KOG2659|consen   26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL  105 (228)
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence            57899999999999999999999999999987 78999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHhccchhhh---cHHHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHHHHHHHH
Q 019785          222 RLQEFIELVRGENNLRAITYARKYLAPWGAT---HMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKL  298 (336)
Q Consensus       222 r~q~fIELir~~~~~eAi~yar~~l~~~~~~---~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l  298 (336)
                      ++|+||||||+|+..+||+|+|.+++|++..   .+.+++++|++|+|.++ +.+|+..+++.++|.++|+.+++++++.
T Consensus       106 q~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~-~~sp~~~l~~~s~R~kvA~~vN~aiL~~  184 (228)
T KOG2659|consen  106 QQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELS-QESPSAELLSQSLRQKVASEVNSAILAS  184 (228)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCc-ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999976   47899999999999965 4599999999999999999999999999


Q ss_pred             hCCCCCchhHHHHHhchhc
Q 019785          299 YGMTLEPLLNIYLQAGLSA  317 (336)
Q Consensus       299 ~gl~~~s~L~~~l~aGlsa  317 (336)
                      ++....|.|..++..++.+
T Consensus       185 ~~~~~~~~l~~llk~~~~~  203 (228)
T KOG2659|consen  185 QEHESEPKLPFLLKLISWA  203 (228)
T ss_pred             hcccccchHHHHHHHHHHH
Confidence            9999999999998766655

>smart00757 CRA CT11-RanBPM

Probab=99.75  E-value=1.7e-18  Score=138.17  Aligned_cols=94  Identities=37%  Similarity=0.553  Sum_probs=88.1

Q ss_pred             CChHHHHHHHHHhccchhhhc---HHHHHHHHHHhcccCCCCCCchhhhcCcccHHHHHHHHHHHHHHHh-CCCCCchhH
Q 019785          233 ENNLRAITYARKYLAPWGATH---MKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY-GMTLEPLLN  308 (336)
Q Consensus       233 ~~~~eAi~yar~~l~~~~~~~---~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~-gl~~~s~L~  308 (336)
                      +++.+||+|||+++++|...+   .++|+++||+|||.++.+.+||+++++++||+.++++|++++|..+ |++.+|+|.
T Consensus         1 ~~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~   80 (99)
T smart00757        1 GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLE   80 (99)
T ss_pred             CcHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHH
Confidence            357899999999999999888   7899999999999987567999999999999999999999999999 999999999


Q ss_pred             HHHHhchhccCCCCcccC
Q 019785          309 IYLQAGLSALNTPYPYSV  326 (336)
Q Consensus       309 ~~l~aGlsaLkt~~C~~~  326 (336)
                      +++++|+.+++|..|+..
T Consensus        81 ~~~~~~~~~~~~l~~~~~   98 (99)
T smart00757       81 ILLSAGLAALKTLLEKGG   98 (99)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999999754

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=99.46  E-value=5.4e-12  Score=117.52  Aligned_cols=179  Identities=16%  Similarity=0.163  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhh
Q 019785          144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD-IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR  222 (336)
Q Consensus       144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d-~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr  222 (336)
                      ..++.+.-.++.+.|-..-+..++.+.|++++.. .+.|.-++.|.+.|.+.++..-++|. +-...|.+.++.+|++|.
T Consensus       101 v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~  179 (396)
T COG5109         101 VTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELY  179 (396)
T ss_pred             eeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHH
Confidence            3466677777778887777888888999988775 58999999999999999999999999 778889998887777766


Q ss_pred             HHH--HHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCCC------C-----------------CCchhh
Q 019785          223 LQE--FIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNT------E-----------------CTTYKA  277 (336)
Q Consensus       223 ~q~--fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~~------~-----------------~~~y~~  277 (336)
                      .-.  +.-++-. ++++|+.|.++.++.|...|...|+..|-.|.+.+..      .                 .-.|.+
T Consensus       180 ~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdID  258 (396)
T COG5109         180 LVSHESLLLIHK-RYDEALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDID  258 (396)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHH
Confidence            554  4444443 8999999999999999999999999999999985430      0                 012222


Q ss_pred             hcCcccHHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCccc
Q 019785          278 LFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYS  325 (336)
Q Consensus       278 L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~  325 (336)
                      - -..-|..|...|.++||+..|+|.+|||...+.+|.+|++....+.
T Consensus       259 k-vnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~  305 (396)
T COG5109         259 K-VNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSG  305 (396)
T ss_pred             H-hhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhh
Confidence            1 1357999999999999999999999999999999999987766553

>smart00668 CTLH C-terminal to LisH motif

Probab=99.35  E-value=1.3e-12  Score=94.04  Aligned_cols=55  Identities=38%  Similarity=0.583  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCCh
Q 019785          181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENN  235 (336)
Q Consensus       181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~  235 (336)
                      |.++.+|+++|+.|++++|++||+++++.+.+.+|.++|.|++|+||||++.|+.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            6789999999999999999999999999999999999999999999999998864

Alpha-helical motif of unknown function.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.86  E-value=3e-05  Score=48.91  Aligned_cols=32  Identities=34%  Similarity=0.689  Sum_probs=29.6

Q ss_pred             cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 019785          142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ  173 (336)
Q Consensus       142 ~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~  173 (336)
                      .+..++++|.+||.++||.++|..|.+|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999875

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.74  E-value=5.3e-05  Score=46.22  Aligned_cols=27  Identities=26%  Similarity=0.575  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHh
Q 019785          144 TRVKRILVDYMLRMSYYETAEKLAESS  170 (336)
Q Consensus       144 ~~l~rlI~dyLlR~G~~~tA~~L~~es  170 (336)
                      +.||++|.+||.++||.+||..|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.61  E-value=0.00061  Score=66.65  Aligned_cols=120  Identities=12%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc-ccHHHHHHHHHHHHHHHcCChHHHHHHHHhhchhhhhcCCchhHhh
Q 019785          143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQDL-VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL  221 (336)
Q Consensus       143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~-~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L  221 (336)
                      +..+-|++.+.|+..||-+++..+..|+||--. .|..      ...+.++.|++..|+.-...-.-...+......|.+
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~k------lf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv   90 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTK------LFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLV   90 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHH------HHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHH
Confidence            457789999999999999999999999998532 3444      466788999999998877666333344456788999


Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCC
Q 019785          222 RLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN  269 (336)
Q Consensus       222 r~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~  269 (336)
                      ..|.|+|+++.|++.+|+...|..+.+... +.+.+.++...|++++.
T Consensus        91 ~kQ~fLEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~  137 (519)
T KOG0293|consen   91 NKQIFLEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSND  137 (519)
T ss_pred             HHHHHHHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhcccc
Confidence            999999999999999999999977776543 56778888888887654

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=95.72  E-value=0.0036  Score=63.46  Aligned_cols=172  Identities=13%  Similarity=0.068  Sum_probs=133.2

Q ss_pred             HHHHHHHHHhChHHHHHHHHHHhCC-CCccc---HHHHH--------HHHHHHHHHHcCChHHHHHHHHhhchhhhh---
Q 019785          148 RILVDYMLRMSYYETAEKLAESSNI-QDLVD---IEVFQ--------EAKKVIDALQNKEVAPALAWCSDNKSRLKK---  212 (336)
Q Consensus       148 rlI~dyLlR~G~~~tA~~L~~es~i-~~~~d---~e~f~--------~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k---  212 (336)
                      ..+..|++..|+.+++..++....- .+.+.   ...+.        .+.......-.+-+..+.+.|.+..+..++   
T Consensus       254 ~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~  333 (469)
T KOG1477|consen  254 VPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQ  333 (469)
T ss_pred             CCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccce
Confidence            4788899999999999888765432 11111   11111        122222333457778888888888777776   


Q ss_pred             ----cCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhh-----hcHHHHHHHHHHhcccCCCCCCchhhhcCccc
Q 019785          213 ----SKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGA-----THMKELQRVMATLAFKSNTECTTYKALFEPKQ  283 (336)
Q Consensus       213 ----~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~-----~~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~r  283 (336)
                          ..+..-+.++++.+|.+.+.|.+...++|-+..+++...     ...+.++.+++||+|.++.. ++-..++++..
T Consensus       334 ~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~-s~~g~~~~~~~  412 (469)
T KOG1477|consen  334 VFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEE-SPVGYLLDPIQ  412 (469)
T ss_pred             eecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCccc-CccccccCccc
Confidence                347888999999999999999999999999999988766     34678999999999999875 66788889999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCchhHHHHHhchhccCCCCcccC
Q 019785          284 WDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYPYSV  326 (336)
Q Consensus       284 w~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkt~~C~~~  326 (336)
                      .+-+++..+.+.+...+.+.+++|..++.      +++.|...
T Consensus       413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~------~~~~~~~~  449 (469)
T KOG1477|consen  413 REPVAEALNSAILETDNNSKDPDLERVLS------QTPAELSL  449 (469)
T ss_pred             chhHHhhhcccccccCCCCccchhhhhhc------cchhhHhh
Confidence            99999999999999999999999888886      67777554

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=86.81  E-value=1.9  Score=36.65  Aligned_cols=48  Identities=13%  Similarity=0.405  Sum_probs=42.7

Q ss_pred             CchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHH
Q 019785          215 SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA  262 (336)
Q Consensus       215 s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~  262 (336)
                      +.+-|=+.+.=|++||..|...+|..|..++-..+...+..+|+++.+
T Consensus        38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~   85 (142)
T PF04494_consen   38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSS   85 (142)
T ss_dssp             GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            568999999999999999999999999999999998888888888865

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1

Probab=85.50  E-value=23  Score=30.61  Aligned_cols=37  Identities=11%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             ChHHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHh
Q 019785          195 EVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR  231 (336)
Q Consensus       195 di~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir  231 (336)
                      .++.||+++.+|...-....-.+-|+--+.+.+.|||
T Consensus       103 ~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk  139 (157)
T PF04136_consen  103 RLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIK  139 (157)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4788999999986543332223344444444444444

This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.32  E-value=15  Score=33.33  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHH----HHhhchhhhhcC----C
Q 019785          144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAW----CSDNKSRLKKSK----S  215 (336)
Q Consensus       144 ~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W----~~~n~~~L~k~~----s  215 (336)
                      .++|.++-+||+=.|+..|-++|-.|...+......+=....+..+++..+|++..-+.    =+...++|....    .
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            67899999999999999999888877665432222111223345556667777654332    223344444432    3


Q ss_pred             chhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhcccCCCCCCchhhhcCcccHHHH
Q 019785          216 KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFL  287 (336)
Q Consensus       216 ~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLaf~~~~~~~~y~~L~~~~rw~~L  287 (336)
                      .||-.|.+...+--|..++...|=+|.+|.-+...  +..|=+.-+.+=-.+...+.+|++..|+. .|.++
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq--nq~eWkDWF~fPf~~~a~~tppf~~~F~k-tw~e~  154 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ--NQAEWKDWFVLPFLPSAKDTPPFRKYFDK-TWIEI  154 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh--cchhhhhheecccCCCCCCCccHHHHHHh-hhhHh
Confidence            56666777777777778888888888876433322  12222233222222333455788887754 57665

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=82.75  E-value=2.4  Score=35.54  Aligned_cols=65  Identities=11%  Similarity=0.311  Sum_probs=49.0

Q ss_pred             HHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHh
Q 019785          200 LAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL  264 (336)
Q Consensus       200 L~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lL  264 (336)
                      -.|+.+.-..-+..=+.+-|=+.+.-|++||.+|...+|..|..++-.-+...|.++|+++.+..
T Consensus        12 ~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~   76 (133)
T cd08044          12 RKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSIT   76 (133)
T ss_pred             HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccC
Confidence            34665552222222245889999999999999999999999999988888777888888886544

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 48/325 (14%), Positives = 88/325 (27%), Gaps = 81/325 (24%)

Query: 44  EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSEN--FSKDDAVNHLTSLVSR 101
           EHQ+       YK  +     A          +  DV D      SK++ ++H+      
Sbjct: 13  EHQY------QYKDILSVFEDAFVDNF-----DCKDVQDMPKSILSKEE-IDHIIMSKDA 60

Query: 102 LQGLKRKLEEGSRTEHLQAQKCRARLNHLESADAENLAEWNNTRVKRILVD-YMLRMSYY 160
           + G  R          L +++       +E     N  ++  + +K       M+   Y 
Sbjct: 61  VSGTLRLFWT------LLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI 113

Query: 161 ETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAP---------------ALAWCSD 205
           E  ++L   + +    ++   Q   K+  AL     A                AL  C  
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 206 NK--------------SRLKKSKSKFEFQLRL-----QEFIELVRGENNLR-----AITY 241
            K                    ++  E   +L       +       +N++         
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 242 ARKYLAP-------------WGATHMK--ELQ-RVMATLAFKSNTE----CTTYKALFEP 281
            R+ L                 A       L  +++ T  FK  T+     TT     + 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 282 KQWDFLVDQFKQEFCKLYGMTLEPL 306
                  D+ K    K      + L
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	92.57
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	88.4
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	83.86
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	83.14
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	83.07
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	80.97

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=92.57  E-value=0.14  Score=38.94  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             hhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc
Q 019785          139 AEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDL  175 (336)
Q Consensus       139 ~~w~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~~  175 (336)
                      ....++.|++.|++||..+||.+++.+|.++.+++..
T Consensus         6 t~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A            6 SQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            3455689999999999999999999999999988743

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=88.40  E-value=0.83  Score=38.29  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             HHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhc
Q 019785          198 PALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLA  265 (336)
Q Consensus       198 ~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLa  265 (336)
                      .-..|+..+-..-+..-+.+-|=+.+.=|++||..|...+|-.|.+++-+-+...|.++|+++.++.-
T Consensus        33 ~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~  100 (156)
T 2nxp_A           33 GLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTK  100 (156)
T ss_dssp             HHHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCS
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence            34567777643333333678999999999999999999999999999888888788899999887543

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=83.14  E-value=0.72  Score=38.46  Aligned_cols=65  Identities=15%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             HHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHH
Q 019785          198 PALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMAT  263 (336)
Q Consensus       198 ~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~l  263 (336)
                      .-..|++.+-..-+..=+.|-|=+.+.=|++||..| ..+|-.|..++-+-+...|.++|+++.++
T Consensus        16 ~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i   80 (148)
T 2j49_A           16 MLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSV   80 (148)
T ss_dssp             HHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTC
T ss_pred             HHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcC
Confidence            345687776322222225688999999999999999 99999999988888877777888877663

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=83.07  E-value=1.7  Score=35.60  Aligned_cols=66  Identities=14%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             HHHHHHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHH
Q 019785          197 APALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMAT  263 (336)
Q Consensus       197 ~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~l  263 (336)
                      ..-..|++.+-..-+..=+.+-|=+.+.=|++||..|...+|-.|..++-+-+... .++|+++.++
T Consensus        13 ~~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i   78 (138)
T 2j4b_A           13 VSLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESI   78 (138)
T ss_dssp             HHHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTC
T ss_pred             HHHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcC
Confidence            34456887763333333367899999999999999999999999999887777665 6777777654

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=80.97  E-value=1.7  Score=33.10  Aligned_cols=33  Identities=15%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q 019785          142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQD  174 (336)
Q Consensus       142 ~~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~~  174 (336)
                      ...++|.+|--||...||..+|-.|.+|++|..
T Consensus         4 tsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            4 TSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            467899999999999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	93.65
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	87.81
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	82.51

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.65  E-value=0.047  Score=38.70  Aligned_cols=31  Identities=16%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 019785          143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQ  173 (336)
Q Consensus       143 ~~~l~rlI~dyLlR~G~~~tA~~L~~es~i~  173 (336)
                      +..|++.|++||..+|+.+++..|.++.+++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            5789999999999999999999999999886

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.46  Score=37.64  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             HHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHHhc
Q 019785          201 AWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLA  265 (336)
Q Consensus       201 ~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~lLa  265 (336)
                      .|+.+.-..-+..=+.+-|=+.+.=|++||.+|+..+|..|..++-.-+...|.++|+++.++.-
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~   93 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTK   93 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCS
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCC
Confidence            36655544333333678999999999999999999999999999888887788899999987643

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=82.51  E-value=0.93  Score=34.94  Aligned_cols=62  Identities=15%  Similarity=0.296  Sum_probs=46.8

Q ss_pred             HHHHhhchhhhhcCCchhHhhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHHH
Q 019785          201 AWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMAT  263 (336)
Q Consensus       201 ~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~eiq~~m~l  263 (336)
                      .|+..+-..-+..=+.+-|=+.+.=|++||.+|...+|..|.+++-..+. .+.++|+++.++
T Consensus        11 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i   72 (131)
T d2j4ba1          11 TWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESI   72 (131)
T ss_dssp             HHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTC
T ss_pred             HHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHcc
Confidence            57766544333333678899999999999999999999999998766664 477888888773