Citrus Sinensis ID: 019821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFLHGDS
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHHccccccccEEEHEccccccccccHHHcccccccccEEEEEccccccccccccccHHcccccEEcccccccEEccccEEEEEEEEEEEEccccccccccEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHccHHHHcccccccc
Coil and Loop (DISEMBL)
mdqlessvppgfrfhpteEELVGYYLKRKINSLkidldviididlykiepwdIQARcnlgydeqnewyffshkdrkyptgtrtnrataAGFWKATGRDKAVLSKNKLIGMRKTLVFykgrapngsktdWIMHEYRlqtsengpiqeegWVVCRafrkptpnhrqgfepwnhscyirdcshvrsisdqshsdivaethlvhpnhqgtnfqqpfgsdnqqldyipagnnsffdnnqlielpqldsptistslaakdqglhrnnnniisinedceeersnnngagqcnnvtdWKNLDNLLESqvlmpfqntmpltpqnfeleaqgHVGHILGFLHGDS
Flexible Loop (DISEMBL)
mdqlessvppgfrfhpteEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFshkdrkyptgtrtnrataagfwkatgrdkavlsknkligmrktlvfykgrapngsktDWIMHEYRLQTsengpiqeeGWVVCRAFRKPTpnhrqgfepwnhSCYIRDCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPTISTSLaakdqglhrnNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFLHGDS
Low Complexity Region (SEG)
MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKidldviididlYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPtgtrtnrataagFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFLHGDS
Disordered region (IsUnstruct)
***************PTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSIS******IVAETHLV*******************LDYIPAGNNSFFDNNQLIE*********************************************QCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFL****
Disordered Region (DISOPRED)
*****SS**PGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQT*****IQEEGWVVCRAFR**********************************************************************************************************************************VTDWKNLDNLLES******************************FL****
Disordered Region (DISEMBL)
********PPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFLHGDS
Disordered Region (DISPRO)
*******VPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPT**********************************************TNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSP*****************************************NVTDWKNLDNLLESQVL******************QG*****L*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQVLMPFQNTMPLTPQNFELEAQGHVGHILGFLHGDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q9FWX2	395	NAC domain-containing pro	no	no	0.453	0.384	0.75	6e-70
Q84WP6	365	NAC domain-containing pro	no	no	0.456	0.419	0.660	5e-63
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.468	0.423	0.701	1e-62
Q9LPI7	358	NAC domain-containing pro	no	no	0.456	0.427	0.666	2e-61
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.465	0.511	0.675	4e-61
Q5Z6B6	276	NAC domain-containing pro	no	no	0.474	0.576	0.674	5e-60
Q9M274	334	NAC domain-containing pro	no	no	0.456	0.458	0.642	6e-60
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.447	0.439	0.684	7e-60
Q84TE6	324	NAC domain-containing pro	no	no	0.462	0.478	0.542	1e-45
Q93VY3	297	NAC domain-containing pro	no	no	0.474	0.535	0.493	3e-45

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  264 bits (675), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 134/152 (88%)

Query: 6   SSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQN 65
           S VPPGFRFHPT+EELV YYL++K+ S +I++D I DIDLYKIEPWD+Q  C +G++EQ+
Sbjct: 5   SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query: 66  EWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGS 125
           +WYFFSHKD+KYPTGTRTNRAT AGFWKATGRDKA+  ++ LIGMRKTLVFYKGRAPNG 
Sbjct: 65  DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query: 126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRK 157
           K+DWIMHEYRL+T ENG  QEEGWVVCR F+K
Sbjct: 125 KSDWIMHEYRLETDENGTPQEEGWVVCRVFKK 156

Transcription factor probably involved in xylem formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  241 bits (616), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 130/168 (77%), Gaps = 15/168 (8%)

Query: 5   ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQ 64
           +S VPPGFRFHPTEEEL+ YYL++K+NS++IDLDVI D+DL K+EPWDIQ  C +G   Q
Sbjct: 13  QSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQ 72

Query: 65  NEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
           N+WYFFSHKD+KYPTGTRTNRATAAGFWKATGRDK + S  + IGMRKTLVFYKGRAP+G
Sbjct: 73  NDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHG 132

Query: 125 SKTDWIMHEYRLQTSENGP---------------IQEEGWVVCRAFRK 157
            K+DWIMHEYRL  +   P                Q+EGWVVCR F+K
Sbjct: 133 QKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKK 180

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 113/161 (70%), Positives = 136/161 (84%), Gaps = 4/161 (2%)

Query: 7   SVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNE 66
           SVPPGFRFHPTEEEL+ YYLK+K++   IDLDVI ++DL K+EPW+++ +C +G   QNE
Sbjct: 16  SVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIGSGPQNE 75

Query: 67  WYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAV-LSKNKLIGMRKTLVFYKGRAPNGS 125
           WYFFSHKD+KYPTGTRTNRATAAGFWKATGRDK++ L+ +K IG+RKTLVFY GRAP+G 
Sbjct: 76  WYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYTGRAPHGQ 135

Query: 126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGF 166
           KT+WIMHEYRL  SEN  IQE+GWVVCR F+K   NH +GF
Sbjct: 136 KTEWIMHEYRLDDSEN-EIQEDGWVVCRVFKK--KNHFRGF 173

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabidopsis thaliana GN=NAC012 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 127/165 (76%), Gaps = 12/165 (7%)

Query: 5   ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQ 64
           +S VPPGFRFHPTEEEL+ YYL++K+NS KIDLDVI ++DL K+EPWDIQ  C +G   Q
Sbjct: 13  QSKVPPGFRFHPTEEELLHYYLRKKVNSQKIDLDVIREVDLNKLEPWDIQEECRIGSTPQ 72

Query: 65  NEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
           N+WYFFSHKD+KYPTGTRTNRAT AGFWKATGRDK + S  + IG+RKTLVFYKGRAP+G
Sbjct: 73  NDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIICSCVRRIGLRKTLVFYKGRAPHG 132

Query: 125 SKTDWIMHEYRLQ------------TSENGPIQEEGWVVCRAFRK 157
            K+DWIMHEYRL             T +     EEGWVVCR FRK
Sbjct: 133 QKSDWIMHEYRLDDTPMSNGYADVVTEDPMSYNEEGWVVCRVFRK 177

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulates the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 106/157 (67%), Positives = 128/157 (81%), Gaps = 1/157 (0%)

Query: 1   MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLG 60
           M      VPPGFRFHPT+EEL+ YYLK+KI+  K +++VI ++DL KIEPWD+Q RC +G
Sbjct: 1   MSSSNGGVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIG 60

Query: 61  YDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGR 120
              QNEWYFFSHKDRKYPTG+RTNRAT +GFWKATGRDK + +  K IGMRKTLVFYKGR
Sbjct: 61  STPQNEWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGR 120

Query: 121 APNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRK 157
           AP+G KTDWIMHEYR++ +E+ P  E+GWVVCR F+K
Sbjct: 121 APHGQKTDWIMHEYRIEDTEDDPC-EDGWVVCRVFKK 156

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score =  231 bits (590), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 130/163 (79%), Gaps = 4/163 (2%)

Query: 7   SVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNE 66
           SVPPGFRFHPT+EEL+ YYL++K+    IDLDVI +IDL K+EPWD++ RC +G   QNE
Sbjct: 9   SVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNE 68

Query: 67  WYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKL-IGMRKTLVFYKGRAPNGS 125
           WYFFSHKD+KYPTGTRTNRAT AGFWKATGRDKA+   N   IGMRKTLVFY GRAP+G 
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRAPHGK 128

Query: 126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEP 168
           KTDWIMHEYRL   +N  +QE+GWVVCR F K +  +++G  P
Sbjct: 129 KTDWIMHEYRLD-QDNVDVQEDGWVVCRVFMKKS--YQRGLNP 168

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  231 bits (589), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 127/168 (75%), Gaps = 15/168 (8%)

Query: 5   ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQ 64
           +S VPPGFRFHPTEEEL+ YYL++KI+++KIDLDVI DIDL K+EPWDIQ  C +G   Q
Sbjct: 8   QSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQ 67

Query: 65  NEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
           N+WYF+SHKD+KYPTGTRTNRAT  GFWKATGRDK + +    IGMRKTLVFYKGRAP+G
Sbjct: 68  NDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFYKGRAPHG 127

Query: 125 SKTDWIMHEYRLQTS-------------ENGPI--QEEGWVVCRAFRK 157
            K+DWIMHEYRL  S             E   +   +EGWVVCR F+K
Sbjct: 128 QKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKK 175

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  231 bits (589), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 125/152 (82%), Gaps = 2/152 (1%)

Query: 8   VPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEW 67
           VPPGFRFHPT+EEL+ YYLK+KI+  K +++VI ++DL K+EPWD+Q RC +G   QNEW
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 68  YFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKT 127
           YFFSHKDRKYPTG+RTNRAT AGFWKATGRDK + +  K IGMRKTLVFYKGRAP+G KT
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 128

Query: 128 DWIMHEYRLQTSENGPI--QEEGWVVCRAFRK 157
           DWIMHEYRL+ +++      E+GWVVCR F K
Sbjct: 129 DWIMHEYRLEDADDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/166 (54%), Positives = 116/166 (69%), Gaps = 11/166 (6%)

Query: 1   MDQLESSVPPGFRFHPTEEELVGYYLKRKI--NSLKIDLDVIIDIDLYKIEPWDIQARCN 58
           +  +E+ +PPGFRFHP ++ELV  YL R+   N+ +  L V+I +DL K EPWDI     
Sbjct: 12  ISMVEAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPL-VLIQVDLNKCEPWDIPKMAC 70

Query: 59  LGYDEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYK 118
           +G     +WYF+S +DRKY TG RTNRATA G+WKATG+D+ +L K KL+GMRKTLVFY+
Sbjct: 71  VG---GKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQ 127

Query: 119 GRAPNGSKTDWIMHEYRLQTSENGP-----IQEEGWVVCRAFRKPT 159
           GRAP G KTDW+MHE+RLQ S + P       +E WV+CR F K T
Sbjct: 128 GRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNT 173

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 113/164 (68%), Gaps = 5/164 (3%)

Query: 7   SVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNE 66
           S+PPGFRF+PT+EEL+  YL RK+      L VI DIDLYK +PWD+ ++   G   + E
Sbjct: 13  SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFG---EKE 69

Query: 67  WYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSK 126
           WYFFS +DRKYP G+R NR   +G+WKATG DK + +  + +G++K LVFY G+AP G+K
Sbjct: 70  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTK 129

Query: 127 TDWIMHEYRL--QTSENGPIQEEGWVVCRAFRKPTPNHRQGFEP 168
           T+WIMHEYRL   +  +G  + + WV+CR ++K + + RQ   P
Sbjct: 130 TNWIMHEYRLIEHSRSHGSSKLDDWVLCRIYKKTSGSQRQAVTP 173

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
312618442	322	wood-associated NAC domain transcription	0.916	0.953	0.661	1e-118
255571750	334	NAC domain-containing protein, putative	0.943	0.946	0.643	1e-114
327397094	319	transcription factor [Populus trichocarp	0.904	0.949	0.659	1e-112
224135535	319	NAC domain protein, IPR003441 [Populus t	0.904	0.949	0.653	1e-111
224146393	317	NAC domain protein, IPR003441 [Populus t	0.907	0.958	0.639	1e-111
225460730	313	PREDICTED: NAC domain-containing protein	0.913	0.977	0.637	1e-109
356533995	350	PREDICTED: NAC domain-containing protein	0.865	0.828	0.650	1e-105
356574587	352	PREDICTED: NAC domain-containing protein	0.853	0.812	0.643	1e-105
15217612	324	vascular related NAC-domain protein 7 [A	0.820	0.848	0.610	1e-96
297839039	326	hypothetical protein ARALYDRAFT_316163 [	0.862	0.886	0.583	2e-94

>gi|312618442|gb|ADR00341.1| wood-associated NAC domain transcription factor 6B [Populus trichocarpa] gi|327397096|dbj|BAK14365.1| transcription factor [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/337 (66%), Positives = 256/337 (75%), Gaps = 30/337 (8%)

Query: 3   QLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYD 62
           ++ES VPPGFRFHPTEEELVGYYLKRKI+S KIDLDVI +IDLYK+EPWDIQARCNLGY 
Sbjct: 2   EMESCVPPGFRFHPTEEELVGYYLKRKIDSQKIDLDVIANIDLYKMEPWDIQARCNLGYA 61

Query: 63  EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 122
           EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKN+LIGMRKTLVFYKGRAP
Sbjct: 62  EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNRLIGMRKTLVFYKGRAP 121

Query: 123 NGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVR 182
           NG KTDWIMHEYRLQTSE+GP QEEGWVVCRAF+KP+PN RQGFE W+H+ Y+ D +H R
Sbjct: 122 NGRKTDWIMHEYRLQTSEHGPPQEEGWVVCRAFKKPSPNQRQGFEAWSHAYYLNDINHAR 181

Query: 183 SISDQSHSDIVAETH-LVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFD-NNQLIELPQ 240
                S SD V   H +V PN QG +FQQPFGS++  +      N +F D NNQL+ELP+
Sbjct: 182 P---PSFSDTVTTAHNMVRPN-QGASFQQPFGSNSDLV-----SNQTFLDNNNQLVELPE 232

Query: 241 LDSP-TISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLES 299
           LDSP T+STS AAK+   H+        NED +EERSNN+     +   DWKN D LL S
Sbjct: 233 LDSPSTLSTSFAAKEGNFHQ-------TNEDYDEERSNNS-----SQYIDWKNFDTLLAS 280

Query: 300 QVL-----MPFQNTMPLTPQNFELEAQGHVGHILGFL 331
           QV       P Q+ +P  PQN++L A     ++  FL
Sbjct: 281 QVTDSSTSYPLQD-LPSIPQNYDLAAGQQDQYVSHFL 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571750|ref|XP_002526818.1| NAC domain-containing protein, putative [Ricinus communis] gi|223533822|gb|EEF35553.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/337 (64%), Positives = 253/337 (75%), Gaps = 21/337 (6%)

Query: 3   QLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYD 62
           ++ES VPPGFRFHPTEEELVGYYLKRKINSLK DL+VI+DIDLYK+EPW+I+ARC LGYD
Sbjct: 2   EMESCVPPGFRFHPTEEELVGYYLKRKINSLKFDLEVIVDIDLYKMEPWEIEARCKLGYD 61

Query: 63  EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 122
           EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP
Sbjct: 62  EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 121

Query: 123 NGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDC-SHV 181
           NG KTDWIMHEYRLQTSE+GP QEEGWVVCRAF+KP PN R GFE WNH+ Y  +  +HV
Sbjct: 122 NGRKTDWIMHEYRLQTSEHGPPQEEGWVVCRAFKKPIPNQRPGFEAWNHAYYTNNINNHV 181

Query: 182 RSISDQSHSDIVAETHLVHPNHQGT--NFQQPFGSDNQQLDYIPAGNNS--FFDNNQLIE 237
           R     + +     T ++H  +Q T  NF  P  S   +L    +G+++    DNNQLI+
Sbjct: 182 RPPFSSADTVTATATQMIHHQNQSTSSNFHHPLISSEPELV---SGSHTTLILDNNQLID 238

Query: 238 LPQLDSP--TISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDN 295
           LPQLDSP  T+STS A + +G H N+ + +  NED EEERSNN+         DWKNLD+
Sbjct: 239 LPQLDSPPSTLSTSFATR-KGYHHNSQSGVG-NEDFEEERSNNS-----TQFIDWKNLDS 291

Query: 296 LLESQVL---MPFQ-NTMPLTPQNFELEAQGHVGHIL 328
           LL SQV     PF   ++   PQ ++LE Q H+ H L
Sbjct: 292 LLASQVSDTGSPFAIPSLQSIPQGYDLEGQNHISHFL 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327397094|dbj|BAK14364.1| transcription factor [Populus trichocarpa]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/335 (65%), Positives = 250/335 (74%), Gaps = 32/335 (9%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           +ES VPPGFRFHPTEEELVGYYLKRKI+SLKIDLDVI+DIDLY +EPWDIQA+C LGYDE
Sbjct: 1   MESCVPPGFRFHPTEEELVGYYLKRKIHSLKIDLDVIVDIDLYNMEPWDIQAKCKLGYDE 60

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVL+KN+LIGMRKTLVFYKGRAPN
Sbjct: 61  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLTKNRLIGMRKTLVFYKGRAPN 120

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRS 183
           G KTDWIMHEYRLQTSE+GP QEEGWVVCRAF+KP PN RQGFE WNH+ Y+ + +H R 
Sbjct: 121 GRKTDWIMHEYRLQTSEHGPQQEEGWVVCRAFKKPIPNQRQGFEAWNHAYYVNNINHARP 180

Query: 184 ISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFD-NNQLIELPQLD 242
               S SD V  TH VHPN Q  +F QPF S +  + +       F D NN+L+ELPQLD
Sbjct: 181 ---PSFSDTVTTTHTVHPN-QSASFHQPFSSSSDLISH-----QEFLDNNNRLVELPQLD 231

Query: 243 SP-TISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQV 301
           SP T+STS A K+   H+        NED ++ERSNN+     +   DWK+LD LL SQV
Sbjct: 232 SPSTLSTSFAPKEGNFHQ-------TNEDYDDERSNNS-----SQYIDWKSLDTLLASQV 279

Query: 302 ------LMPFQNTMPLTPQNFELEA--QGHVGHIL 328
                   P QN  P   QN++L A  Q HV H L
Sbjct: 280 NDSSTSSFPLQN-FPSITQNYDLAAGQQDHVSHFL 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135535|ref|XP_002327242.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222835612|gb|EEE74047.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|312618440|gb|ADR00340.1| wood-associated NAC domain transcription factor 6A [Populus trichocarpa]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/335 (65%), Positives = 249/335 (74%), Gaps = 32/335 (9%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           +ES VPPGFRFHPTEEELVGYYLKRKI+SLKIDLDVI+DIDLY +EPWDIQA+C LGYDE
Sbjct: 1   MESCVPPGFRFHPTEEELVGYYLKRKIHSLKIDLDVIVDIDLYNMEPWDIQAKCKLGYDE 60

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVL+KN+LIGMRKTLVFYKGRAPN
Sbjct: 61  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLTKNRLIGMRKTLVFYKGRAPN 120

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRS 183
           G KTDWIMHEYRLQTSE+GP Q +GWVVCRAF+KP PN RQGFE WNH+ Y+ + +H R 
Sbjct: 121 GRKTDWIMHEYRLQTSEHGPQQAKGWVVCRAFKKPIPNQRQGFEAWNHAYYVNNINHARP 180

Query: 184 ISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFD-NNQLIELPQLD 242
               S SD V  TH VHPN Q  +F QPF S +  + +       F D NN+L+ELPQLD
Sbjct: 181 ---PSFSDTVTTTHTVHPN-QSASFHQPFSSSSDLISH-----QEFLDNNNRLVELPQLD 231

Query: 243 SP-TISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQV 301
           SP T+STS A K+   H+        NED ++ERSNN+     +   DWK+LD LL SQV
Sbjct: 232 SPSTLSTSFAPKEGNFHQ-------TNEDYDDERSNNS-----SQYIDWKSLDTLLASQV 279

Query: 302 ------LMPFQNTMPLTPQNFELEA--QGHVGHIL 328
                   P QN  P   QN++L A  Q HV H L
Sbjct: 280 NDSSTSSFPLQN-FPSITQNYDLAAGQQDHVSHFL 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146393|ref|XP_002325991.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222862866|gb|EEF00373.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/336 (63%), Positives = 247/336 (73%), Gaps = 32/336 (9%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           +ES VPPGFRFHPTEEELVGYYLKRKI+S KIDLDVI +IDLYK+EPWDIQARCNLGY E
Sbjct: 1   MESCVPPGFRFHPTEEELVGYYLKRKIDSQKIDLDVIANIDLYKMEPWDIQARCNLGYAE 60

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKN+LIGMRKTLVFYKGRAPN
Sbjct: 61  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNRLIGMRKTLVFYKGRAPN 120

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRS 183
           G KTDWIMHEY         +QEEGWVVCRAF+KP+PN RQGFE W+H+ Y+ D +H R 
Sbjct: 121 GRKTDWIMHEY--PNYSGFQMQEEGWVVCRAFKKPSPNQRQGFEAWSHAYYLNDINHARP 178

Query: 184 ISDQSHSDIVAETH-LVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFD-NNQLIELPQL 241
               S SD V   H +V PN QG +FQQPFGS++  +      N +F D NNQL+ELP+L
Sbjct: 179 ---PSFSDTVTTAHNMVRPN-QGASFQQPFGSNSDLV-----SNQTFLDNNNQLVELPEL 229

Query: 242 DSP-TISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQ 300
           DSP T+STS AAK+   H+        NED +EERSNN+     +   DWKN D LL SQ
Sbjct: 230 DSPSTLSTSFAAKEGNFHQ-------TNEDYDEERSNNS-----SQYIDWKNFDTLLASQ 277

Query: 301 VL-----MPFQNTMPLTPQNFELEAQGHVGHILGFL 331
           V       P Q+ +P  PQN++L A     ++  FL
Sbjct: 278 VTDSSTSYPLQD-LPSIPQNYDLAAGQQDQYVSHFL 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460730|ref|XP_002267778.1| PREDICTED: NAC domain-containing protein 7 [Vitis vinifera] gi|296081146|emb|CBI18172.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/328 (63%), Positives = 248/328 (75%), Gaps = 22/328 (6%)

Query: 3   QLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYD 62
           ++ES VPPGFRFHPTE+ELV YYLKRKINSLKIDLDVII+IDLY++EPWDIQ RC LGYD
Sbjct: 2   EMESCVPPGFRFHPTEQELVDYYLKRKINSLKIDLDVIIEIDLYRMEPWDIQDRCKLGYD 61

Query: 63  EQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 122
           EQNEWYFFSHKD+KYPTGTRTNRATAAGFWKATGRDKAV+ +N++IGMRKTLVFYKGRAP
Sbjct: 62  EQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVILRNRIIGMRKTLVFYKGRAP 121

Query: 123 NGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVR 182
           NG KTDWIMHEYRLQTSE+GP QEEGWVVCRAF+KPT +H+Q +E W+H+ Y+RD SHV 
Sbjct: 122 NGRKTDWIMHEYRLQTSEHGPPQEEGWVVCRAFKKPTSSHKQSYEAWSHAYYVRDSSHVE 181

Query: 183 SISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLD 242
             S  +    ++  H+VHPN QG  +Q+ FGS+ Q+L Y     N    NNQ  E+PQLD
Sbjct: 182 PPSLPA---TLSPMHMVHPN-QGF-YQRYFGSE-QELMY-----NHGIMNNQAFEIPQLD 230

Query: 243 SPT-ISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQV 301
           SP+ +S SLA K+   H   NN    +E  E+E S++          DWKNLD+LL SQ 
Sbjct: 231 SPSALSPSLATKEVFEHNGMNN----SEYFEDENSDH-----AKQYIDWKNLDDLLASQ- 280

Query: 302 LMPFQNTMPLTPQNFELEAQGHVGHILG 329
           L    ++ PL P N EL AQ  V H+LG
Sbjct: 281 LADTTSSAPLVPYNSELGAQNPVSHLLG 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533995|ref|XP_003535543.1| PREDICTED: NAC domain-containing protein 7-like [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/306 (65%), Positives = 235/306 (76%), Gaps = 16/306 (5%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           +ES VPPGFRFHPTE+ELVGYYLKRKINSLKIDLDVI++IDLYK+EPWDIQ RC LGY++
Sbjct: 19  MESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQ 78

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKD+KYPTGTRTNRATAAGFWKATGRDKAV+SKN++IGMRKTLVFYKGRAPN
Sbjct: 79  QNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPN 138

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFE-PWNHSC-----YIRD 177
           G KTDWIMHEYR QTSE+GP QEEGWVVCRAFRKP+P+HR GF+ PW  +      + RD
Sbjct: 139 GRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRPGFDHPWCSTSSQQQHFFRD 198

Query: 178 CSHVRSISDQSHSDIVAETHLV-HPNHQGTNFQQPFGSDNQQ-LDYIPAGNNSFFDNNQL 235
                S    S +DI+ ET+ V HPN +GT+F  PF SD+QQ L+ + +       + QL
Sbjct: 199 QIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLNNLLSNQTVAIMDKQL 258

Query: 236 IELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDN 295
           IELPQLDSPT S ++   +Q  H    N ++  E C +ERSNN+ A       DWK+LDN
Sbjct: 259 IELPQLDSPTASLAIKECNQQQH----NGLTNEEYCSDERSNNSNA----QGIDWKSLDN 310

Query: 296 LLESQV 301
           L  SQ+
Sbjct: 311 LFGSQL 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574587|ref|XP_003555427.1| PREDICTED: NAC domain-containing protein 7-like [Glycine max]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/306 (64%), Positives = 235/306 (76%), Gaps = 20/306 (6%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           +ES VPPGFRFHPTEEELVGYYLKRKINSLKIDLDVI++IDLYK+EPWDIQ RC LGY++
Sbjct: 26  MESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQ 85

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKD+KYPTGTRTNRATAAGFWKATGRDKAV+SKN++IGMRKTLVFYKGRAPN
Sbjct: 86  QNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPN 145

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSC-----YIRD- 177
           G KTDWIMHEYR QTSE+GP QEEGWVVCRAFRKP+P+HRQGF+PW  +      + RD 
Sbjct: 146 GRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGFDPWCSTSSQQQHFFRDQ 205

Query: 178 -CSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQ-LDYIPAGNNSFFDNNQL 235
             S+ R +S    +DI+ ET+ V    +GT+F   F SDNQQ L+ I +   +   + QL
Sbjct: 206 IQSYARPLSI---ADILNETNNVPHPVEGTSFSHSFNSDNQQHLNNIISNQTAIIMDKQL 262

Query: 236 IELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDN 295
           +ELPQLDSPT S ++   +Q  H    N ++  E C +ERSN++  G      DWK+ DN
Sbjct: 263 LELPQLDSPTASLAIKECNQQQH----NGLTNEEYCSDERSNSSAQG-----IDWKSFDN 313

Query: 296 LLESQV 301
           L  SQ+
Sbjct: 314 LFGSQL 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217612|ref|NP_177338.1| vascular related NAC-domain protein 7 [Arabidopsis thaliana] gi|12324533|gb|AAG52219.1|AC021665_2 NAM-like protein; 48543-50167 [Arabidopsis thaliana] gi|21553558|gb|AAM62651.1| NAM-like protein [Arabidopsis thaliana] gi|111074362|gb|ABH04554.1| At1g71930 [Arabidopsis thaliana] gi|332197133|gb|AEE35254.1| vascular related NAC-domain protein 7 [Arabidopsis thaliana]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/303 (61%), Positives = 214/303 (70%), Gaps = 28/303 (9%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           ++SS+PPGFRFHPTEEELVGYYL RKINS+K  LDVI++IDLYK+EPWDIQARC LGY+E
Sbjct: 5   MQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKMEPWDIQARCKLGYEE 64

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKN +IGMRKTLV+YKGRAPN
Sbjct: 65  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIGMRKTLVYYKGRAPN 124

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQ-GFEPWNHSCYIRDCSHVR 182
           G K+DWIMHEYRLQ SE  P+QEEGWVVCRAFRKP PN R  G+EPW +  Y     HV 
Sbjct: 125 GRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYEPWQNQLY-----HVE 179

Query: 183 SISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLD 242
           S ++ S S  +  +H +  +    N  Q   S+N    Y P   +S       IELPQLD
Sbjct: 180 SSNNYSSSVTMNTSHHIGASSSSHNLNQMLMSNNH---YNPNNTSSSMHQYGNIELPQLD 236

Query: 243 SPTISTSLAA-KDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQV 301
           SP++S SL   KDQ            NE  E+E        +  N  DW+ LD LLE+QV
Sbjct: 237 SPSLSPSLGTNKDQ------------NESFEQEEE------KSFNCVDWRTLDTLLETQV 278

Query: 302 LMP 304
           + P
Sbjct: 279 IHP 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839039|ref|XP_002887401.1| hypothetical protein ARALYDRAFT_316163 [Arabidopsis lyrata subsp. lyrata] gi|297333242|gb|EFH63660.1| hypothetical protein ARALYDRAFT_316163 [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/319 (58%), Positives = 222/319 (69%), Gaps = 30/319 (9%)

Query: 4   LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDE 63
           ++SS+PPGFRFHPTEEELVGYYL+RKINS+K  LDVI++IDLYK+EPWDIQARC LGY+E
Sbjct: 5   MQSSMPPGFRFHPTEEELVGYYLERKINSMKSALDVIVEIDLYKMEPWDIQARCKLGYEE 64

Query: 64  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPN 123
           QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKN +IGMRKTLV+YKGRAPN
Sbjct: 65  QNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNIVIGMRKTLVYYKGRAPN 124

Query: 124 GSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQ-GFEPWNHSCYIRDCSHVR 182
           G K+DWIMHEYRLQ SE  P+QEEGWVVCRAFRKP PN R  G+EPW +  Y     HV 
Sbjct: 125 GRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYEPWQNQLY-----HVE 179

Query: 183 SISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLD 242
           + ++ S S  +  +H +  +    N  Q   S+N    Y P   +S        ELPQLD
Sbjct: 180 NSNNYSSSVTMNTSHHIGASSSNHNLNQMLMSNNH---YNPNNVSSSMHQYGNNELPQLD 236

Query: 243 SPTISTSLAA-KDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLESQV 301
           SP++S SL   KDQ            NE  E+E        +  N  DW+ LD+LLE+QV
Sbjct: 237 SPSLSPSLGTNKDQ------------NESFEQEEE------KSFNCVDWRTLDSLLETQV 278

Query: 302 LMPFQNTMPLTPQNFELEA 320
             P    + +T  +FE ++
Sbjct: 279 THPHNPNVLMT--SFETQS 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2016049	324	VND7 "vascular related NAC-dom	0.940	0.972	0.507	3.4e-77
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.877	0.805	0.448	1.8e-64
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.856	0.761	0.445	1.8e-64
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.453	0.384	0.631	7.8e-60
TAIR|locus:2155046	292	NAC105 "NAC domain containing	0.752	0.863	0.462	7.3e-59
TAIR|locus:2026232	394	ANAC026 "Arabidopsis NAC domai	0.832	0.708	0.428	9.9e-55
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.859	0.827	0.401	3.4e-54
TAIR|locus:2019833	371	SMB "SOMBRERO" [Arabidopsis th	0.805	0.727	0.420	1e-52
TAIR|locus:2122804	341	NAC070 "NAC domain containing	0.447	0.439	0.592	9.8e-50
TAIR|locus:2044360	365	NST1 "NAC SECONDARY WALL THICK	0.456	0.419	0.535	9.8e-50

TAIR|locus:2016049 VND7 "vascular related NAC-domain protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 169/333 (50%), Positives = 203/333 (60%)

Query:     1 MDQL-ESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNL 59
             MD + +SS+PPGFRFHPTEEELVGYYL RKINS+K           YK+EPWDIQARC L
Sbjct:     1 MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKMEPWDIQARCKL 60

Query:    60 GYDEQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKG 119
             GY+EQNEWYFFSHKDRKYP            FWKATGRDKAVLSKN +IGMRKTLV+YKG
Sbjct:    61 GYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIGMRKTLVYYKG 120

Query:   120 RAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQ-GFEPWNHSCYIRDC 178
             RAPNG K+DWIMHEYRLQ SE  P+QEEGWVVCRAFRKP PN R  G+EPW +  Y    
Sbjct:   121 RAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQRPLGYEPWQNQLY---- 176

Query:   179 SHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIEL 238
              HV S ++ S S  +  +H +  +    N  Q   S+N    Y P   +S       IEL
Sbjct:   177 -HVESSNNYSSSVTMNTSHHIGASSSSHNLNQMLMSNNH---YNPNNTSSSMHQYGNIEL 232

Query:   239 PQLDSPTISTSLAA-KDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLL 297
             PQLDSP++S SL   KDQ          S N  C + R+ +        V    N + L+
Sbjct:   233 PQLDSPSLSPSLGTNKDQNESFEQEEEKSFN--CVDWRTLDTLLE--TQVIHPHNPNILM 288

Query:   298 -ESQVLMPFQNTMPLTPQNFELEAQGHVGHILG 329
              E+Q   P  +  P   Q++  E + ++ H LG
Sbjct:   289 FETQSYNPAPS-FPSMHQSYN-EVEANIHHSLG 319

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 144/321 (44%), Positives = 188/321 (58%)

Query:     1 MDQLES-SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNL 59
             M+ +ES SVPPGFRFHPT+EELVGYYL++KI S K           Y+IEPWD+Q +C +
Sbjct:     1 MEPMESCSVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQEQCRI 60

Query:    60 GYDEQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKG 119
             GY+EQNEWYFFSHKD+KYP            FWKATGRDKAV  K KLIGMRKTLVFYKG
Sbjct:    61 GYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKG 120

Query:   120 RAPNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCS 179
             RAPNG K+DWIMHEYRL++ EN P QEEGWVVCRAF+K      +  E W+ S +  + +
Sbjct:   121 RAPNGKKSDWIMHEYRLESDENAPPQEEGWVVCRAFKKRATGQAKNTETWSSSYFYDEVA 180

Query:   180 H--VRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIE 237
                V S+ D    D +++    H N  G           Q+L+ +  G N +  +NQ I+
Sbjct:   181 PNGVNSVMDPI--DYISKQQ--H-NIFGKGLMC-----KQELEGMVDGIN-YIQSNQFIQ 229

Query:   238 LPQLDSPTI------STSLAAKDQGLHRNNNNIISINEDCE-----EERSNNNGAGQCNN 286
             LPQL SP++      S+S++      + N    ++  E  E     E+R       Q   
Sbjct:   230 LPQLQSPSLPLMKRPSSSMSITSMDNNYNYKLPLADEESFESFIRGEDRRKKKK--QVMM 287

Query:   287 VTDWKNLDNLLESQVLMPFQN 307
               +W+ LD  + SQ++    N
Sbjct:   288 TGNWRELDKFVASQLMSQEDN 308

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 142/319 (44%), Positives = 186/319 (58%)

Query:     1 MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLG 60
             +DQ   SVPPGFRFHPT+EELVGYYL++K+ S K           Y+IEPWD+Q  C +G
Sbjct:     4 VDQ-SCSVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDIDLYRIEPWDLQESCRIG 62

Query:    61 YDEQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGR 120
             Y+E+NEWYFFSHKD+KYP            FWKATGRDKAV  K+KLIGMRKTLVFYKGR
Sbjct:    63 YEERNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGR 122

Query:   121 APNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRK-PTPNHRQGFEPWNHSCYIRDC- 178
             APNG KTDWIMHEYRL++ EN P QEEGWVVCRAF+K P     +  E W+ S +  +  
Sbjct:   123 APNGQKTDWIMHEYRLESDENAPPQEEGWVVCRAFKKKPMTGQAKNTETWSSSYFYDELP 182

Query:   179 SHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSD---NQQLDYIPAGNNSFFDNNQL 235
             S VRS+++               N+     Q  F  D    Q+L+    G N F   +Q 
Sbjct:   183 SGVRSVTEPL-------------NYVSKQKQNVFAQDLMFKQELEGSDIGLN-FIHCDQF 228

Query:   236 IELPQLDSPTIS--------TSLAA--KDQGLHRNN--NNIISINEDCEEERSNNNGAGQ 283
             I+LPQL+SP++         TS+ +  K++ +++ +     +S N        +      
Sbjct:   229 IQLPQLESPSLPLTKRPVSLTSITSLEKNKNIYKRHLIEEDVSFNALISSGNKDKKKKKT 288

Query:   284 CNNVTDWKNLDNLLESQVL 302
                 TDW+ LD  + SQ++
Sbjct:   289 SVMTTDWRALDKFVASQLM 307

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 96/152 (63%), Positives = 114/152 (75%)

Query:     6 SSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQN 65
             S VPPGFRFHPT+EELV YYL++K+ S +           YKIEPWD+Q  C +G++EQ+
Sbjct:     5 SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query:    66 EWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGS 125
             +WYFFSHKD+KYP            FWKATGRDKA+  ++ LIGMRKTLVFYKGRAPNG 
Sbjct:    65 DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query:   126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRK 157
             K+DWIMHEYRL+T ENG  QEEGWVVCR F+K
Sbjct:   125 KSDWIMHEYRLETDENGTPQEEGWVVCRVFKK 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2155046 NAC105 "NAC domain containing protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 124/268 (46%), Positives = 165/268 (61%)

Query:     1 MDQLES-SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNL 59
             +DQ  S S+PPGFRFHPT+EELVGYYLK+KI S +           YKIEPWD+Q RC +
Sbjct:     4 VDQDYSCSIPPGFRFHPTDEELVGYYLKKKIASQRIDLDVIREIDLYKIEPWDLQERCRI 63

Query:    60 GYDEQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKG 119
             GY+EQ EWYFFSH+D+KYP            FWKATGRDKAV   +KLIGMRKTLVFY+G
Sbjct:    64 GYEEQTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTLVFYRG 123

Query:   120 RAPNGSKTDWIMHEY-RLQTSENGPIQEEGWVVCRAFRKPT--PNHRQGFEPWNHSCYIR 176
             RAPNG K+DWI+HEY  L++ +N P QEEGWVVCRAF+K T  P  R+  + W+ +C   
Sbjct:   124 RAPNGQKSDWIIHEYYSLESHQNSPPQEEGWVVCRAFKKRTTIPTKRR--QLWDPNCLFY 181

Query:   177 DCSHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSF--FDNNQ 234
             D + +    D+         H  +P+   T F+Q   S+   +     G+      D++Q
Sbjct:   182 DDATLLEPLDKR------ARH--NPDFTATPFKQELLSEASHVQDGDFGSMYLQCIDDDQ 233

Query:   235 LIELPQLDSPTISTSLAAKDQGLHRNNN 262
               +LPQL+SP++ + +         N++
Sbjct:   234 FSQLPQLESPSLPSEITPHSTTFSENSS 261

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2026232 ANAC026 "Arabidopsis NAC domain containing protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 126/294 (42%), Positives = 165/294 (56%)

Query:     6 SSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQN 65
             S VPPGFRFHPT+EELV YYL++K+ S +           YKIEP D+Q  C +G +EQ+
Sbjct:     5 SQVPPGFRFHPTDEELVDYYLRKKVASKRIEIDIIKDVDLYKIEPCDLQELCKIGNEEQS 64

Query:    66 EWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGS 125
             EWYFFSHKD+KYP            FWKATGRDKA+  ++ LIGMRKTLVFYKGRAPNG 
Sbjct:    65 EWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYIRHSLIGMRKTLVFYKGRAPNGQ 124

Query:   126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGFEPWNHSCYIRDCSHVRSIS 185
             K+DWIMHEYRL+TSENG  QEEGWVVCR F+K      +    + HS   +   +   +S
Sbjct:   125 KSDWIMHEYRLETSENGTPQEEGWVVCRVFKKKLAATVRKMGDY-HSSPSQHW-YDDQLS 182

Query:   186 DQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIELPQLDSPT 245
               +   I +      PNH            +QQ   +P G N+F +NN  ++  Q     
Sbjct:   183 FMASEIISSSPRQFLPNHHYNRHH------HQQT--LPCGLNAFNNNNPNLQCKQELELH 234

Query:   246 ISTSLAAKDQGLHRNNNNIISINEDCEEERSNNNGAGQCNNVTDWKNLDNLLES 299
              +  +  + Q  H   +  + + +  E   SN N     NN T  +N+ NL +S
Sbjct:   235 YNQMVQHQQQNHHLRESMFLQLPQ-LESPTSNCNSDN--NNNT--RNISNLQKS 283

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 124/309 (40%), Positives = 169/309 (54%)

Query:     1 MDQLESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLG 60
             M+ L + +PPG+RFHPT+EELV YYLK K+               YKIEPWDIQ  C  G
Sbjct:     1 MESL-AHIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRG 59

Query:    61 YDEQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGR 120
               E+ EWYFFSHKD+KYP            FWKATGRDKA+ SK +L+GMRKTLVFYKGR
Sbjct:    60 TGEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGR 119

Query:   121 APNGSKTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKP--TPNHRQGFEPWNHSCYIRDC 178
             APNG K+DWIMHEYRL+T ENGP  EEGWVVCRAF+K   T N+       N    +   
Sbjct:   120 APNGQKSDWIMHEYRLETDENGPPHEEGWVVCRAFKKKLTTMNYN------NPRTMMGSS 173

Query:   179 SHVRSISDQSHSDIVAETHLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDNNQLIEL 238
             S   S       D+    +   P+ +     Q  GS +  L  +   +   +     + L
Sbjct:   174 SGQESNWFTQQMDVGNGNYYHLPDLESPRMFQ--GSSSSSLSSLHQNDQDPYG----VVL 227

Query:   239 PQLDSPTISTSLAAKDQG--LHRNNNNIISINEDCEEERSNNNGAGQCNN--VTDWKNLD 294
               +++    T++  +D G  +  +++++I +N    +   +       +N  V DW+ LD
Sbjct:   228 STINATP--TTIMQRDDGHVITNDDDHMIMMNTSTGDHHQSGLLVNDDHNDQVMDWQTLD 285

Query:   295 NLLESQVLM 303
               + SQ++M
Sbjct:   286 KFVASQLIM 294

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2019833 SMB "SOMBRERO" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 130/309 (42%), Positives = 166/309 (53%)

Query:     7 SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNE 66
             SVPPGFRFHPTEEEL+ YYLK+K++               K+EPW+++ +C +G   QNE
Sbjct:    16 SVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKEKCRIGSGPQNE 75

Query:    67 WYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAV-LSKNKLIGMRKTLVFYKGRAPNGS 125
             WYFFSHKD+KYP            FWKATGRDK++ L+ +K IG+RKTLVFY GRAP+G 
Sbjct:    76 WYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTLVFYTGRAPHGQ 135

Query:   126 KTDWIMHEYRLQTSENGPIQEEGWVVCRAFRKPTPNHRQGF------EPWNHSCYI---R 176
             KT+WIMHEYRL  SEN  IQE+GWVVCR F+K   NH +GF      +  +H  YI    
Sbjct:   136 KTEWIMHEYRLDDSEN-EIQEDGWVVCRVFKKK--NHFRGFHQEQEQDHHHHHQYISTNN 192

Query:   177 DCSHVRSISDQS--HSDIVAET--HLVHPNHQGTNFQQPFGSDNQQLDYIPAGNNSFFDN 232
             D  H   I   S  HS ++     H  H +H G     P       L +   G+      
Sbjct:   193 DHDHHHHIDSNSNNHSPLILHPLDHHHHHHHIGRQIHMPLHEFANTLSH---GS------ 243

Query:   233 NQLIELPQLDSPTISTSLAAKDQGLHRNNNNIISINEDCEEE----RSNNNGAGQCNNVT 288
                + LPQL SP  + + AA         + I + + +C +      SNNN  G      
Sbjct:   244 ---MHLPQLFSPDSAAAAAAAAASAQPFVSPINTTDIECSQNLLRLTSNNNYGG------ 294

Query:   289 DWKNLDNLL 297
             DW  LD LL
Sbjct:   295 DWSFLDKLL 303

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010455 "positive regulation of cell fate commitment" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0003002 "regionalization" evidence=IMP

TAIR|locus:2122804 NAC070 "NAC domain containing protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 90/152 (59%), Positives = 105/152 (69%)

Query:     8 VPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNEW 67
             VPPGFRFHPT+EEL+ YYLK+KI+  K            K+EPWD+Q RC +G   QNEW
Sbjct:     9 VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query:    68 YFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKT 127
             YFFSHKDRKYP            FWKATGRDK + +  K IGMRKTLVFYKGRAP+G KT
Sbjct:    69 YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 128

Query:   128 DWIMHEYRLQTSENGPIQ--EEGWVVCRAFRK 157
             DWIMHEYRL+ +++      E+GWVVCR F K
Sbjct:   129 DWIMHEYRLEDADDPQANPSEDGWVVCRVFMK 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2044360 NST1 "NAC SECONDARY WALL THICKENING PROMOTING FACTOR1" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 90/168 (53%), Positives = 108/168 (64%)

Query:     5 ESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQ 64
             +S VPPGFRFHPTEEEL+ YYL++K+NS++            K+EPWDIQ  C +G   Q
Sbjct:    13 QSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQ 72

Query:    65 NEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
             N+WYFFSHKD+KYP            FWKATGRDK + S  + IGMRKTLVFYKGRAP+G
Sbjct:    73 NDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHG 132

Query:   125 SKTDWIMHEYRLQTSENGP---------------IQEEGWVVCRAFRK 157
              K+DWIMHEYRL  +   P                Q+EGWVVCR F+K
Sbjct:   133 QKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKK 180

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009834 "secondary cell wall biogenesis" evidence=IGI;IMP

GO:0009901 "anther dehiscence" evidence=IGI

GO:0009809 "lignin biosynthetic process" evidence=IGI

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC055 NAC domain protein, IPR003441 (319 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-79

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  236 bits (604), Expect = 8e-79
 Identities = 86/130 (66%), Positives = 103/130 (79%), Gaps = 4/130 (3%)

Query: 9   PPGFRFHPTEEELVGYYLKRKINSLKIDL-DVIIDIDLYKIEPWDIQARCNLGYDEQNEW 67
           PPGFRFHPT+EELV YYLKRK+    + L DVI ++D+YK EPWD+      G D   EW
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGD--REW 59

Query: 68  YFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKN-KLIGMRKTLVFYKGRAPNGSK 126
           YFFS +DRKYP G+RTNRAT +G+WKATG+DK VLSK  +++GM+KTLVFYKGRAP G K
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 127 TDWIMHEYRL 136
           TDW+MHEYRL
Sbjct: 120 TDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.3e-42  Score=294.32  Aligned_cols=127  Identities=51%  Similarity=1.072  Sum_probs=96.6

Q ss_pred             CCCCceeCCChHHHHHHHHHHHHccCCCCC-CeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCccccc
Q 019821            8 VPPGFRFHPTEEELVGYYLKRKINSLKIDL-DVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTNRA   86 (335)
Q Consensus         8 LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~-~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~nRa   86 (335)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||+.|||+|++....   .+++||||+++++++.++.|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~---~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKG---GDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS----SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccC---CCceEEEEEecccccCCccccccc
Confidence            799999999999999999999999999877 7999999999999999953222   346999999999999999999999


Q ss_pred             CCCCeeeecCCCeEEec-CCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeC
Q 019821           87 TAAGFWKATGRDKAVLS-KNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQ  137 (335)
Q Consensus        87 tggG~WK~tG~~k~I~~-~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~  137 (335)
                      +++|+||++|+.++|.+ +|.+||+|++|+||.++.+++.+|+|+||||+|+
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999996 8999999999999998888999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	335
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		1e-32
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-32
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-32

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 7   SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNE 66
           S+PPGFRF+PT+EEL+  YL RK                YK +PW +  +   G   + E
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKE 72
Query: 67  WYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSK 126
           WYFFS +DRKYP            +WKATG DK + ++ + +G++K LVFY G+AP G+K
Sbjct: 73  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 127 TDWIMHEYRL--QTSENGPIQEEGWVVCRAFRK 157
           T+WIMHEYRL   +  NG  + + WV+CR ++K
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 92/153 (60%), Gaps = 5/153 (3%)
Query: 7   SVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYDEQNE 66
           S+PPGFRF+PT+EEL+  YL RK                YK +PW +  +   G   + E
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKE 75
Query: 67  WYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSK 126
           WYFFS +DRKYP            +WKATG DK + ++ + +G++K LVFY G+AP G+K
Sbjct: 76  WYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 127 TDWIMHEYRL--QTSENGPIQEEGWVVCRAFRK 157
           T+WIMHEYRL   +  NG  + + WV+CR ++K
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 168

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 10/162 (6%)
Query: 3   QLESSVPPGFRFHPTEEELVGYYLKRKINSLKXXXXXXXXXXXYKIEPWDIQARCNLGYD 62
           + E ++PPGFRFHPT++ELV +YL RK    +           YK +PWD+  R   G  
Sbjct: 10  EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG-- 67
Query: 63  EQNEWYFFSHKDRKYPXXXXXXXXXXXXFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAP 122
              EWYFF+ +DRKYP            +WKATG DK V  + + +G++K LVFY G+AP
Sbjct: 68  -AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAP 126
Query: 123 NGSKTDWIMHEYRL-------QTSENGPIQEEGWVVCRAFRK 157
            G KTDWIMHEYRL         ++ G ++ + WV+CR + K
Sbjct: 127 RGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1ut7_A	171	No apical meristem protein; transcription regulati	1e-101
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-99

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  294 bits (755), Expect = e-101
 Identities = 76/161 (47%), Positives = 109/161 (67%), Gaps = 5/161 (3%)

Query: 5   ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQ 64
           + S+PPGFRF+PT+EEL+  YL RK       L +I +IDLYK +PW +  +   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70

Query: 65  NEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
            EWYFFS +DRKYP G+R NR   +G+WKATG DK + ++ + +G++K LVFY G+AP G
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 125 SKTDWIMHEYRL--QTSENGPIQEEGWVVCRAFRKPTPNHR 163
           +KT+WIMHEYRL   +  NG  + + WV+CR ++K +   +
Sbjct: 131 TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  289 bits (742), Expect = 2e-99
 Identities = 78/169 (46%), Positives = 109/169 (64%), Gaps = 10/169 (5%)

Query: 2   DQLESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGY 61
            + E ++PPGFRFHPT++ELV +YL RK    ++ + +I ++DLYK +PWD+  R   G 
Sbjct: 9   AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG- 67

Query: 62  DEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRA 121
               EWYFF+ +DRKYP G+R NRA   G+WKATG DK V  + + +G++K LVFY G+A
Sbjct: 68  --AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKA 125

Query: 122 PNGSKTDWIMHEYRLQTSE-------NGPIQEEGWVVCRAFRKPTPNHR 163
           P G KTDWIMHEYRL  +         G ++ + WV+CR + K     +
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7.8e-55  Score=388.92  Aligned_cols=153  Identities=50%  Similarity=1.073  Sum_probs=134.6

Q ss_pred             ccCCCCCCceeCCChHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCcc
Q 019821            4 LESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRT   83 (335)
Q Consensus         4 ~~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~   83 (335)
                      .+..|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++.+..|   +++||||+++++||++|.|.
T Consensus        11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~R~   87 (174)
T 3ulx_A           11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGSRP   87 (174)
T ss_dssp             STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----CCS
T ss_pred             cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCCCc
Confidence            346899999999999999999999999999999999999999999999999986544   47999999999999999999


Q ss_pred             cccCCCCeeeecCCCeEEecCCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeCCCCCCC-------CCCCceEEEEEEE
Q 019821           84 NRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENGP-------IQEEGWVVCRAFR  156 (335)
Q Consensus        84 nRatggG~WK~tG~~k~I~~~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~~~-------~~~~~~VLCRIyk  156 (335)
                      ||+|++||||++|+++.|..+|.+||+||+|+||.|+++++.||+|+||||+|......+       ...++|||||||+
T Consensus        88 nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           88 NRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             CEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             eeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            999999999999999999988999999999999999999999999999999999864321       2468999999999


Q ss_pred             cCC
Q 019821          157 KPT  159 (335)
Q Consensus       157 K~~  159 (335)
                      |+.
T Consensus       168 K~~  170 (174)
T 3ulx_A          168 KKN  170 (174)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            875

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=3.2e-54  Score=383.96  Aligned_cols=153  Identities=48%  Similarity=1.023  Sum_probs=131.0

Q ss_pred             cCCCCCCceeCCChHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCccc
Q 019821            5 ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTN   84 (335)
Q Consensus         5 ~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~n   84 (335)
                      +..|||||||+|||||||.+||++|+.|.+++.++|.++|||++|||+|++....|   +++||||+++++|+++|.|++
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g---~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CC
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC---CccEEEEeccccccCCCCccc
Confidence            46899999999999999999999999999999999999999999999999986544   579999999999999999999


Q ss_pred             ccCCCCeeeecCCCeEEecCCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeCCCCCC--CCCCCceEEEEEEEcCCC
Q 019821           85 RATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSENG--PIQEEGWVVCRAFRKPTP  160 (335)
Q Consensus        85 RatggG~WK~tG~~k~I~~~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~~--~~~~~~~VLCRIykK~~~  160 (335)
                      |+|++|+||++|+++.|..++.+||+||+|+||+|+++++.||+|+||||+|...+..  ....++|||||||+|+..
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            9999999999999999998889999999999999999999999999999999986522  234689999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	7e-67

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  205 bits (523), Expect = 7e-67
 Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 5/155 (3%)

Query: 5   ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQ 64
           + S+PPGFRF+PT+EEL+  YL RK       L +I +IDLYK +PW +  +   G    
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGE--- 70

Query: 65  NEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNG 124
            EWYFFS +DRKYP G+R NR   +G+WKATG DK + ++ + +G++K LVFY G+AP G
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 125 SKTDWIMHEYRL--QTSENGPIQEEGWVVCRAFRK 157
           +KT+WIMHEYRL   +  NG  + + WV+CR ++K
Sbjct: 131 TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-51  Score=362.28  Aligned_cols=151  Identities=50%  Similarity=1.049  Sum_probs=129.2

Q ss_pred             cCCCCCCceeCCChHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCchhhhhhcCCCCCCCeEEEEeecCCCCCCCCccc
Q 019821            5 ESSVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIIDIDLYKIEPWDIQARCNLGYDEQNEWYFFSHKDRKYPTGTRTN   84 (335)
Q Consensus         5 ~~~LPPGfRF~PTDEELV~~YLr~Kv~g~pl~~~vI~dvDVY~~ePwdL~~~~~~G~~~~~eWYFFs~r~kK~~~G~R~n   84 (335)
                      +..|||||||+|||||||.+||++|+.|.+++.++|+++|||+.|||+|++....+   +++||||+++++++++|.|.+
T Consensus        14 ~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~---~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---EKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC---SSEEEEEEECCC-------CC
T ss_pred             cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccC---cceEEEEeeeccccCCCCccc
Confidence            46899999999999999999999999999999999999999999999999875433   478999999999999999999


Q ss_pred             ccCCCCeeeecCCCeEEecCCeEEEeEEEEeeeccCCCCCCCcCeEEEEEEeCCCCC--CCCCCCceEEEEEEEcC
Q 019821           85 RATAAGFWKATGRDKAVLSKNKLIGMRKTLVFYKGRAPNGSKTDWIMHEYRLQTSEN--GPIQEEGWVVCRAFRKP  158 (335)
Q Consensus        85 RatggG~WK~tG~~k~I~~~G~vIG~KKtLvFy~gr~p~g~KT~WiMhEYrL~~~~~--~~~~~~~~VLCRIykK~  158 (335)
                      |++++|+||++|+++.|.++|.+||+||+|+||+++++++.+|+|+||||+|.....  .....++|||||||+|+
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999987643  23346789999999985