Citrus Sinensis ID: 019849

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MEEKGKRVMGLLVLLMFATFQGCFSEANQPPSKKKSTQSTAAHRFGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNFEWH
cccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEEcccccccccEEEEEEEcccccccccccccEEEEcccccccHHHHHHHcccccccEEEEcccccccEEEEccccccccccEEEEcccccccccEEEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccEEccccccccccEEEc
cHHHcccEEEEEEHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccHHHHHHccccccccccccccEEEEEEEccccccEEEEEEEEEEEEccccEEcccEEEEEEcccccccccccccccEEccccccccHHHHHHHccccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccccEEEEcccEEEEccEEEcccccEEEEEcccEEEcccHHHHHHHHHHHHHHccccEEEEccccccccEEEEcEEEEccccEEcc
MEEKGKRVMGLLVLLMFATFqgcfseanqppskkkstqstaahrfgstavfpitgnvyplgYYSVtlkignppklyeldidtgsdltwvqcnapctgctlppeslyhpknnlvacndpfcsafhlpenirceandqcdyevlyadhgsslgvlvtdhfplrltngsllgprlifgcgynqrnpgpkppptagvlglgLGKASILSQLQSLGLTRNVLGHclsvrgggylflghdlvpssgiawtpMSRDLLEKhyssgpaellfggkstgikGLQIIFdsgssytyfnsQAYKTTLDLMRKdlkgkpledtaeekalpvcwkgtwkcllgnfewh
MEEKGKRVMGLLVLLMFATFQGCFSEANQPPSKKKstqstaahrfgstavfpitgNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGkpledtaeekalpvcwkgtWKCLLGNFEWH
MEEKGKRVMGLLVLLMFATFQGCFSEANQPPSKKKSTQSTAAHRFGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNFEWH
*******VMGLLVLLMFATFQGCF*******************RFGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYN***********AGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDL**********EKALPVCWKGTWKCLLGNFEW*
******R***LLVLLMFATFQ**********************************NVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTL**********************************DQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLK*********EKALPVCWKGTWKCLLGNFEWH
MEEKGKRVMGLLVLLMFATFQGCFSE****************HRFGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNFEWH
****GKRVMGLLVLLMFATFQGCFSEANQPPSKKKSTQS*******STAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNFEW*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEKGKRVMGLLVLLMFATFQGCFSEANQPPSKKKSTQSTAAHRFGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWKCLLGNFEWH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q0IU52410 Aspartic proteinase Asp1 no no 0.826 0.675 0.460 1e-64
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.820 0.670 0.453 2e-59
Q9S9K4 475 Aspartic proteinase-like no no 0.865 0.610 0.296 2e-28
Q766C2438 Aspartic proteinase nepen N/A no 0.728 0.557 0.270 3e-14
Q766C3437 Aspartic proteinase nepen N/A no 0.641 0.491 0.299 4e-13
Q9LX20 528 Aspartic proteinase-like no no 0.731 0.464 0.293 1e-12
Q6XBF8437 Aspartic proteinase CDR1 no no 0.761 0.583 0.274 1e-11
Q3EBM5447 Probable aspartic proteas no no 0.653 0.489 0.316 1e-11
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.519 0.370 0.301 3e-11
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.814 0.546 0.256 1e-08
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/293 (46%), Positives = 184/293 (62%), Gaps = 16/293 (5%)

Query: 47  STAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLY 106
           S  V  + GNVYP+G++ +T+ IG+P K Y LDIDTGS LTW+QC+APCT C + P  LY
Sbjct: 22  SAVVLELHGNVYPIGHFFITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLY 81

Query: 107 HPK-NNLVACNDPFCSAFH--LPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLT 163
            P    LV C D  C+  +  L +  RC +  QCDY + Y D  SS+GVLV D F L  +
Sbjct: 82  KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140

Query: 164 NGSLLGPRLI-FGCGYNQ-RNPGPKPPPTAGVLGLGLGKASILSQLQSLG-LTRNVLGHC 220
           NG+   P  I FGCGY+Q +     P P   +LGL  GK ++LSQL+S G +T++VLGHC
Sbjct: 141 NGT--NPTTIAFGCGYDQGKKNRNVPIPVDSILGLSRGKVTLLSQLKSQGVITKHVLGHC 198

Query: 221 LSVRGGGYLFLGHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKG--LQIIF 278
           +S +GGG+LF G   VP+SG+ WTPM+R+   K+YS G   L F   S  I    + +IF
Sbjct: 199 ISSKGGGFLFFGDAQVPTSGVTWTPMNRE--HKYYSPGHGTLHFDSNSKAISAAPMAVIF 256

Query: 279 DSGSSYTYFNSQAYKTTLDLMRKDLKGK---PLEDTAEEKALPVCWKGTWKCL 328
           DSG++YTYF +Q Y+ TL +++  L  +     E T +++AL VCWKG  K +
Sbjct: 257 DSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGKDKIV 309

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
255558640424 nucellin, putative [Ricinus communis] gi 0.964 0.761 0.629 1e-117
224066811422 predicted protein [Populus trichocarpa] 0.949 0.753 0.627 1e-111
224082314410 predicted protein [Populus trichocarpa] 0.931 0.760 0.632 1e-110
356554625 452 PREDICTED: aspartic proteinase Asp1-like 0.964 0.714 0.597 1e-107
356500374 454 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.952 0.702 0.592 1e-101
15219354405 aspartyl protease-like protein [Arabidop 0.868 0.718 0.593 1e-100
449529533 437 PREDICTED: aspartic proteinase Asp1-like 0.859 0.659 0.604 2e-99
297841447410 hypothetical protein ARALYDRAFT_475850 [ 0.820 0.670 0.623 1e-98
449464178 437 PREDICTED: aspartic proteinase Asp1-like 0.859 0.659 0.601 1e-98
297842525 467 hypothetical protein ARALYDRAFT_476912 [ 0.874 0.627 0.591 2e-97
>gi|255558640|ref|XP_002520345.1| nucellin, putative [Ricinus communis] gi|223540564|gb|EEF42131.1| nucellin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/335 (62%), Positives = 258/335 (77%), Gaps = 12/335 (3%)

Query: 1   MEEKGKR-------VMGLLVLLMFATFQGCFSEANQPPSKKKSTQSTAAHRFGSTAVFPI 53
           ME+K KR       +     +++ ATF+G FS A+Q  + KKSTQ +    FGS+ V P+
Sbjct: 1   MEKKRKRRRFSSLLMQSTFFIVLAATFEGSFSAASQRCTLKKSTQHSC---FGSSLVLPV 57

Query: 54  TGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLV 113
            GNVYPLGYYSV+L IGNPPKL+ELDIDTGSDLTWVQC+APCTGCT P   LY P+NNL+
Sbjct: 58  FGNVYPLGYYSVSLYIGNPPKLFELDIDTGSDLTWVQCDAPCTGCTKPLHHLYKPRNNLL 117

Query: 114 ACNDPFCSAFHLPENIRCE-ANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRL 172
           +C DP CSA       +C+ A DQCDYE+ YAD GSSLGVLVTD+FPLRL NGS L P++
Sbjct: 118 SCIDPLCSAVQNSGTYQCQSATDQCDYEIQYADEGSSLGVLVTDYFPLRLMNGSFLRPKM 177

Query: 173 IFGCGYNQRNPGP-KPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFL 231
            FGCGY+Q++PGP  PPPT GVLGLG GK SI+SQLQ+LG+  NV+GHCLS +GGG+LF 
Sbjct: 178 TFGCGYDQKSPGPVAPPPTTGVLGLGNGKTSIISQLQALGVMGNVIGHCLSRKGGGFLFF 237

Query: 232 GHDLVPSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQA 291
           G D VPS GI+W PMS+  L+K+Y+SGPAELL+GGK TG K  + IFDSGSSYTYFN+Q 
Sbjct: 238 GQDPVPSFGISWAPMSQKSLDKYYASGPAELLYGGKPTGTKAEEFIFDSGSSYTYFNAQV 297

Query: 292 YKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGTWK 326
           Y++TL+L+RK+L GKPL D  EEKAL +CWKGT +
Sbjct: 298 YQSTLNLIRKELSGKPLRDAPEEKALAICWKGTKR 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066811|ref|XP_002302227.1| predicted protein [Populus trichocarpa] gi|222843953|gb|EEE81500.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082314|ref|XP_002306645.1| predicted protein [Populus trichocarpa] gi|222856094|gb|EEE93641.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554625|ref|XP_003545645.1| PREDICTED: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information
>gi|356500374|ref|XP_003519007.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase Asp1-like [Glycine max] Back     alignment and taxonomy information
>gi|15219354|ref|NP_175079.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|12320825|gb|AAG50556.1|AC074228_11 nucellin, putative [Arabidopsis thaliana] gi|332193902|gb|AEE32023.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449529533|ref|XP_004171754.1| PREDICTED: aspartic proteinase Asp1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297841447|ref|XP_002888605.1| hypothetical protein ARALYDRAFT_475850 [Arabidopsis lyrata subsp. lyrata] gi|297334446|gb|EFH64864.1| hypothetical protein ARALYDRAFT_475850 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449464178|ref|XP_004149806.1| PREDICTED: aspartic proteinase Asp1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842525|ref|XP_002889144.1| hypothetical protein ARALYDRAFT_476912 [Arabidopsis lyrata subsp. lyrata] gi|297334985|gb|EFH65403.1| hypothetical protein ARALYDRAFT_476912 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2204725 466 AT1G77480 [Arabidopsis thalian 0.913 0.656 0.578 2.7e-100
TAIR|locus:2205861405 AT1G44130 [Arabidopsis thalian 0.865 0.716 0.597 8.2e-99
TAIR|locus:2028466583 AT1G49050 [Arabidopsis thalian 0.868 0.499 0.419 9.3e-59
TAIR|locus:2200365 475 AT1G65240 [Arabidopsis thalian 0.874 0.616 0.296 3.8e-30
TAIR|locus:2183617 482 AT5G36260 [Arabidopsis thalian 0.674 0.468 0.336 2.9e-28
TAIR|locus:2040545 512 AT2G36670 [Arabidopsis thalian 0.731 0.478 0.301 8.1e-25
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.734 0.504 0.301 1.4e-22
TAIR|locus:2200023 492 AT1G08210 [Arabidopsis thalian 0.644 0.439 0.304 2.4e-22
TAIR|locus:2172661 493 AT5G22850 [Arabidopsis thalian 0.719 0.488 0.286 8.7e-22
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.522 0.393 0.340 3.2e-21
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 181/313 (57%), Positives = 233/313 (74%)

Query:    13 VLLMFATFQGCFSEANQPPSKKKSTQSTAAHRFGSTAVFPITGNVYPLGYYSVTLKIGNP 72
             V ++ A FQ   SEA +  S +   Q+    R  ST VFP++GNVYPLGYY V L IGNP
Sbjct:    22 VFILCARFQT--SEATKDSSAQVKLQN---RRLSSTVVFPVSGNVYPLGYYYVLLNIGNP 76

Query:    73 PKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENIRC- 131
             PKL++LDIDTGSDLTWVQC+APC GCT P    Y P +N + C+   CS   LP++  C 
Sbjct:    77 PKLFDLDIDTGSDLTWVQCDAPCNGCTKPRAKQYKPNHNTLPCSHILCSGLDLPQDRPCA 136

Query:   132 EANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPP-T 190
             +  DQCDYE+ Y+DH SS+G LVTD  PL+L NGS++  RL FGCGY+Q+NPGP PPP T
Sbjct:   137 DPEDQCDYEIGYSDHASSIGALVTDEVPLKLANGSIMNLRLTFGCGYDQQNPGPHPPPPT 196

Query:   191 AGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSSGIAWTPMSRDL 250
             AG+LGLG GK  + +QL+SLG+T+NV+ HCLS  G G+L +G +LVPSSG+ WT ++ + 
Sbjct:   197 AGILGLGRGKVGLSTQLKSLGITKNVIVHCLSHTGKGFLSIGDELVPSSGVTWTSLATNS 256

Query:   251 LEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLED 310
               K+Y +GPAELLF  K+TG+KG+ ++FDSGSSYTYFN++AY+  LDL+RKDL GKPL D
Sbjct:   257 PSKNYMAGPAELLFNDKTTGVKGINVVFDSGSSYTYFNAEAYQAILDLIRKDLNGKPLTD 316

Query:   311 TAEEKALPVCWKG 323
             T ++K+LPVCWKG
Sbjct:   317 TKDDKSLPVCWKG 329
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-110
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 4e-38
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-30
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 4e-25
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 8e-25
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-13
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-11
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-05
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 4e-04
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 0.002
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  322 bits (827), Expect = e-110
 Identities = 143/264 (54%), Positives = 168/264 (63%), Gaps = 38/264 (14%)

Query: 61  GYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFC 120
           GYY VT+ IGNPPK Y LDIDTGSDLTW+QC+APCTGC                      
Sbjct: 1   GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------- 38

Query: 121 SAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQ 180
                          QCDYE+ YAD GSS+GVLVTD F L+LTNGS   PR+ FGCGY+Q
Sbjct: 39  ---------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQ 83

Query: 181 RNPGPKPP-PTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSVRGGGYLFLGHDLVPSS 239
           + P   PP PT G+LGLG GK S+ SQL S G+ +NV+GHCLS  GGG+LF G DLVPSS
Sbjct: 84  QGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSS 143

Query: 240 GIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKGLQIIFDSGSSYTYFNSQAYKTTLDLM 299
           G+ WTPM R+  +KHYS GPA LLF G+ TG KGL+++FDSGSSYTYFN+QAY   L L 
Sbjct: 144 GVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAYFKPLTLK 203

Query: 300 RKDLKGKPLEDTAEEKALPVCWKG 323
                   L +   E  L +  KG
Sbjct: 204 FGKGWRTRLLEIPPENYLIISEKG 227

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
PTZ00165 482 aspartyl protease; Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.3
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.17
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.95
PF1365090 Asp_protease_2: Aspartyl protease 96.15
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.55
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.45
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 90.2
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 88.47
PF1365090 Asp_protease_2: Aspartyl protease 88.2
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 86.38
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.22
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 81.71
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 81.32
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-47  Score=372.10  Aligned_cols=267  Identities=28%  Similarity=0.520  Sum_probs=219.9

Q ss_pred             CCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCC----cccCCccccCCCCCCCCCCCCC
Q 019849           58 YPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNN----LVACNDPFCSAFHLPENIRCEA  133 (335)
Q Consensus        58 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S----~v~c~~~~C~~~~~~~~~~c~~  133 (335)
                      ...++|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++|    .++|.++.|..++.  ...|..
T Consensus        80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~  156 (431)
T PLN03146         80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD  156 (431)
T ss_pred             cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCC
Confidence            34679999999999999999999999999999999 999999888999999998    48999999987653  234766


Q ss_pred             CCCCeeEEEeCCCCeEEEEEEEEEEEeeccCC-CcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCCCchhhhhhhcCC
Q 019849          134 NDQCDYEVLYADHGSSLGVLVTDHFPLRLTNG-SLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGL  212 (335)
Q Consensus       134 ~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~g~  212 (335)
                      +..|.|.+.|+||+.+.|.+++|+|+|++..+ ...++++.|||++...+.+.  ...+||||||++..|++.||...  
T Consensus       157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~--~~~~GilGLG~~~~Sl~sql~~~--  232 (431)
T PLN03146        157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD--EKGSGIVGLGGGPLSLISQLGSS--  232 (431)
T ss_pred             CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc--CCCceeEecCCCCccHHHHhhHh--
Confidence            66799999999998889999999999964321 13578999999998766442  25899999999999999999764  


Q ss_pred             cceeeeeeecc-----CCCceEEeCCCCCCC-CCcEEEeCccCCCCCceEEeeeEEEeCcEEccccC--------ccEEE
Q 019849          213 TRNVLGHCLSV-----RGGGYLFLGHDLVPS-SGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGIKG--------LQIIF  278 (335)
Q Consensus       213 i~~~Fs~~L~~-----~~~G~l~~G~~~~~~-g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~~~--------~~~ii  278 (335)
                      +.++||+||.+     ...|.|+||+..+.. +++.|+|++.+..+.+|.|++++|+||++++.++.        +.+||
T Consensus       233 ~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~ii  312 (431)
T PLN03146        233 IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIII  312 (431)
T ss_pred             hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEE
Confidence            55699999963     247999999865443 45899999864324699999999999999876532        47999


Q ss_pred             eccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCccccc----Cccceeeeee
Q 019849          279 DSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKG----TWKCLLGNFE  333 (335)
Q Consensus       279 DSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~f~  333 (335)
                      ||||++++||+++|++|.++|.+++...+..  .....++.||+.    ..|.|+|||.
T Consensus       313 DSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~~~~~P~i~~~F~  369 (431)
T PLN03146        313 DSGTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTSDIKLPIITAHFT  369 (431)
T ss_pred             eCCccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCCCCCCCeEEEEEC
Confidence            9999999999999999999999999743221  123357899984    4589999994

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1htr_B329 Crystal And Molecular Structures Of Human Progastri 8e-04
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 47/234 (20%)
Query: 67  LKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFC---SAF 123
           + IG PP+ + +  DTGS   WV                       V C    C   S F
Sbjct: 18  ISIGTPPQNFLVLFDTGSSNLWVPS---------------------VYCQSQACTSHSRF 56
Query: 124 HLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNP 183
           +  E+     N Q  + + Y   GS  G    D     LT  S+  P   FG   N+   
Sbjct: 57  NPSESSTYSTNGQT-FSLQYGS-GSLTGFFGYD----TLTVQSIQVPNQEFGLSENEPGT 110
Query: 184 GPKPPPTAGVLGLGL-------GKASILSQLQSLGLTRNVLGHCLSVR----GGGYLFLG 232
                   G++GL            ++   +Q   LT  V    LS +    GG  +F G
Sbjct: 111 NFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGG 170
Query: 233 HDLVPSSG-IAWTPMSRDLLEKHYSSGPAELLFGGKSTG--IKGLQIIFDSGSS 283
            D    +G I W P++++L   ++  G  E L GG+++G   +G Q I D+G+S
Sbjct: 171 VDSSLYTGQIYWAPVTQEL---YWQIGIEEFLIGGQASGWCSEGCQAIVDTGTS 221

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-52
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 9e-49
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-45
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-09
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 4e-09
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 4e-08
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-07
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-07
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 6e-07
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 6e-07
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 8e-07
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 1e-06
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 2e-06
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 6e-06
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-05
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-05
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-05
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 2e-05
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-05
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-05
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 5e-05
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 6e-05
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-04
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 2e-04
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 3e-04
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-04
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 9e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  177 bits (449), Expect = 2e-52
 Identities = 48/310 (15%), Positives = 80/310 (25%), Gaps = 41/310 (13%)

Query: 47  STAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLY 106
           +  V P+  +    G +   L+   P     + +D   +  WV C               
Sbjct: 8   NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-QQYSSKTYQAPFC 65

Query: 107 HPKN----NLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRL 162
           H       N   C               C  N             + LG L  D   +  
Sbjct: 66  HSTQCSRANTHQCLSCPA-----ASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHA 120

Query: 163 TNGSLLG-------PRLIFGCGYNQRNPGPKPPPTAGVLGLGLGKASILSQLQSLGLTRN 215
           T GS          P+ +F C  +       P  T GV GLG    S+ +QL S    + 
Sbjct: 121 TQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQR 180

Query: 216 VLGHCLSVR--GGGYLFLGHDLVPSSGIAWTPMSRDLL--------EKHYSSGPAELLFG 265
               CLS      G +  G             +  DL         +  Y+     +   
Sbjct: 181 QFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRIN 240

Query: 266 GKS-----------TGIKGLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEE 314
             S            G      +  + + +       Y+    +  + L  +    +   
Sbjct: 241 QHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP 300

Query: 315 KALPVCWKGT 324
               +C+   
Sbjct: 301 --FGLCFNSN 308
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.85
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 81.16
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 81.1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1.2e-48  Score=376.52  Aligned_cols=276  Identities=20%  Similarity=0.301  Sum_probs=222.8

Q ss_pred             CCCceeeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCC
Q 019849           45 FGSTAVFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFH  124 (335)
Q Consensus        45 ~~s~~~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~  124 (335)
                      +.+.+.+|++++ ..+++|+++|.||||||++.|+|||||+++||+|. +|   .  ....|.    .+.|.++.|...+
T Consensus         5 ~~~~~~~pv~~d-~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c---~--~Sst~~----~v~C~s~~C~~~~   73 (413)
T 3vla_A            5 RPSALVVPVKKD-ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QN---Y--VSSTYR----PVRCRTSQCSLSG   73 (413)
T ss_dssp             CCSEEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SS---C--CCTTCE----ECBTTSHHHHHTT
T ss_pred             CCccEEEEeeec-CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CC---C--CCCCcC----ccCCCcccccccc
Confidence            466889999954 68999999999999999999999999999999998 65   2  112232    3899999998776


Q ss_pred             CCCCC--------CCCCCCCCeeEEEe-CCCCeEEEEEEEEEEEeeccCCC-----cCCCceEEEeeeecCCCCCCCCCc
Q 019849          125 LPENI--------RCEANDQCDYEVLY-ADHGSSLGVLVTDHFPLRLTNGS-----LLGPRLIFGCGYNQRNPGPKPPPT  190 (335)
Q Consensus       125 ~~~~~--------~c~~~~~~~~~~~Y-~~Gs~~~G~~~~D~v~~~~~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~  190 (335)
                      .+...        .|. .+.|.|.+.| ++|+.+.|.+++|+|+|+..+|.     ..++++.|||++....... ...+
T Consensus        74 ~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~-~~~~  151 (413)
T 3vla_A           74 SIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL-ASGV  151 (413)
T ss_dssp             CCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS-CTTC
T ss_pred             cCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc-cccc
Confidence            55322        233 2579999999 58889999999999999765443     4678999999987532111 2568


Q ss_pred             ceEEeeCCCCCchhhhhhhcCCcceeeeeeecc--CCCceEEeCCCCC-------CCCC-cEEEeCccCCC---------
Q 019849          191 AGVLGLGLGKASILSQLQSLGLTRNVLGHCLSV--RGGGYLFLGHDLV-------PSSG-IAWTPMSRDLL---------  251 (335)
Q Consensus       191 ~GIlGLg~~~~s~~~ql~~~g~i~~~Fs~~L~~--~~~G~l~~G~~~~-------~~g~-l~~~p~~~~~~---------  251 (335)
                      |||||||++++|++.||..++.++++||+||.+  ...|+|+||+.+.       ..++ +.|+|++.++.         
T Consensus       152 dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~  231 (413)
T 3vla_A          152 VGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG  231 (413)
T ss_dssp             CEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTT
T ss_pred             ccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccccc
Confidence            999999999999999999998889999999985  4689999998863       2567 99999998742         


Q ss_pred             --CCceEEeeeEEEeCcEEcccc----------CccEEEeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCc
Q 019849          252 --EKHYSSGPAELLFGGKSTGIK----------GLQIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPV  319 (335)
Q Consensus       252 --~~~~~v~~~~i~v~g~~~~~~----------~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~  319 (335)
                        ..+|.|.+++|+||++.+.++          .+.+||||||++++||+++|++|.++|.+++..++++++.....++.
T Consensus       232 ~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~  311 (413)
T 3vla_A          232 EPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGA  311 (413)
T ss_dssp             CCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSC
T ss_pred             CCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcc
Confidence              169999999999999988654          37899999999999999999999999999886444555433445789


Q ss_pred             ccccC----------ccceeeeee
Q 019849          320 CWKGT----------WKCLLGNFE  333 (335)
Q Consensus       320 C~~~~----------~~~~~~~f~  333 (335)
                      ||+.+          .|.+.|+|.
T Consensus       312 C~~~~~~~~~~~~~~lP~i~f~f~  335 (413)
T 3vla_A          312 CFSTDNILSTRLGPSVPSIDLVLQ  335 (413)
T ss_dssp             EEECTTCCEETTEECCCCEEEECS
T ss_pred             eeccCCccccccccCCCcEEEEEc
Confidence            99864          588999884
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 335
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-27
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-18
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-17
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-17
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-17
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 2e-16
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-16
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 4e-16
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 5e-16
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 5e-16
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 8e-16
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 7e-15
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-14
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 5e-14
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 5e-14
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 5e-14
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 8e-14
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-13
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-13
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-12
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-10
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-10
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  107 bits (267), Expect = 4e-27
 Identities = 46/273 (16%), Positives = 77/273 (28%), Gaps = 28/273 (10%)

Query: 50  VFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLP---PESLY 106
           + P+T +     Y  +    G       L +D    L W  C+       +P   P  L 
Sbjct: 4   LAPVTKDPATSLYT-IPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLL 57

Query: 107 HPKNNLVACNDPFCSAFHLPENIRCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGS 166
                   C  P C +                Y         + G L    F    T+GS
Sbjct: 58  ANAYPAPGCPAPSCGS-------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGS 110

Query: 167 LLGPRLIFGCGYNQRNPGP---KPPPTAGVLGLGLGKASILSQLQSLGLTRNVLGHCLSV 223
               ++  G              P  + GV GL     ++ +Q+ S     N    CL  
Sbjct: 111 KPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170

Query: 224 RGGGYLFLGHDLVP----SSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI-----KGL 274
            G G    G   VP    +  + +TP+        +      ++ G     +        
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230

Query: 275 QIIFDSGSSYTYFNSQAYKTTLDLMRKDLKGKP 307
            ++  +   Y       Y+  +D   K L  + 
Sbjct: 231 GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQH 263
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-40  Score=314.73  Aligned_cols=247  Identities=20%  Similarity=0.305  Sum_probs=204.4

Q ss_pred             eeeeeeCCCCCeeEEEEEEeCCCCcEEEEEEeCCCCceeEecCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCCCC
Q 019849           50 VFPITGNVYPLGYYSVTLKIGNPPKLYELDIDTGSDLTWVQCNAPCTGCTLPPESLYHPKNNLVACNDPFCSAFHLPENI  129 (335)
Q Consensus        50 ~~pl~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~y~p~~S~v~c~~~~C~~~~~~~~~  129 (335)
                      ..||.+  +.+.+|+++|.||||||++.|+|||||+++||+|+ +|..|..+.++.|+|++|+      +|+        
T Consensus        47 ~~~l~n--~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~-~C~~~~~~~~~~yd~~~Ss------t~~--------  109 (370)
T d3psga_          47 DEPLEN--YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSS------TFE--------  109 (370)
T ss_dssp             CCTTGG--GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCT------TCE--------
T ss_pred             cccccc--ccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc-cCCCcccccccccCCCccc------ccc--------
Confidence            456753  56789999999999999999999999999999999 9999988889999998874      111        


Q ss_pred             CCCCCCCCeeEEEeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeeecCCCCCCCCCcceEEeeCCCC------Cch
Q 019849          130 RCEANDQCDYEVLYADHGSSLGVLVTDHFPLRLTNGSLLGPRLIFGCGYNQRNPGPKPPPTAGVLGLGLGK------ASI  203 (335)
Q Consensus       130 ~c~~~~~~~~~~~Y~~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~~GIlGLg~~~------~s~  203 (335)
                          ..+|.|.+.|++| ++.|.+++|++.+    ++..++++.||++....+.+....+.+||+|||+..      .++
T Consensus       110 ----~~~~~~~~~Yg~G-s~~G~~~~d~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~  180 (370)
T d3psga_         110 ----ATSQELSITYGTG-SMTGILGYDTVQV----GGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPV  180 (370)
T ss_dssp             ----EEEEEEEEESSSC-EEEEEEEEEEEEE----TTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCH
T ss_pred             ----cCCCcEEEEeCCc-eEEEEEEEEEEee----eceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCch
Confidence                1468999999999 7999999999999    677889999999988766544346789999999874      458


Q ss_pred             hhhhhhcCCc-ceeeeeeecc--CCCceEEeCCCCC--CCCCcEEEeCccCCCCCceEEeeeEEEeCcEEccc-cCccEE
Q 019849          204 LSQLQSLGLT-RNVLGHCLSV--RGGGYLFLGHDLV--PSSGIAWTPMSRDLLEKHYSSGPAELLFGGKSTGI-KGLQII  277 (335)
Q Consensus       204 ~~ql~~~g~i-~~~Fs~~L~~--~~~G~l~~G~~~~--~~g~l~~~p~~~~~~~~~~~v~~~~i~v~g~~~~~-~~~~~i  277 (335)
                      +.+|..+++| +++|++|+.+  ..+|.|+||+++.  ..+++.|+|+...   .+|.|.++++.++|+.+.. .+..++
T Consensus       181 ~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~---~~w~v~~~~i~v~g~~~~~~~~~~ai  257 (370)
T d3psga_         181 FDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE---GYWQITLDSITMDGETIACSGGCQAI  257 (370)
T ss_dssp             HHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE---TTEEEEECEEESSSSEEECTTCEEEE
T ss_pred             hhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc---ceEEEEEeeEEeCCeEEecCCCccEE
Confidence            8899999999 8999999984  4578999999874  3789999999776   5999999999999887654 347999


Q ss_pred             EeccccceeeCHHHHHHHHHHHHHHhcCCCCCCCcCCCCcCcccccC-ccceeeee
Q 019849          278 FDSGSSYTYFNSQAYKTTLDLMRKDLKGKPLEDTAEEKALPVCWKGT-WKCLLGNF  332 (335)
Q Consensus       278 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~~f  332 (335)
                      |||||+++++|+++|++|.++|.+.....       ..-...|++.. .|.+.|+|
T Consensus       258 iDSGTs~~~lp~~~~~~i~~~l~~~~~~~-------~~~~~~C~~~~~~P~l~f~f  306 (370)
T d3psga_         258 VDTGTSLLTGPTSAIANIQSDIGASENSD-------GEMVISCSSIDSLPDIVFTI  306 (370)
T ss_dssp             ECTTCCSEEEEHHHHHHHHHHTTCEECTT-------CCEECCGGGGGGCCCEEEEE
T ss_pred             EecCCceEeCCHHHHHHHHHHhCCeeecC-------CcEEEeccccCCCceEEEEE
Confidence            99999999999999999998886544321       11223588864 59999998
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure