Citrus Sinensis ID: 019856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 335 | ||||||
| 224089879 | 401 | predicted protein [Populus trichocarpa] | 0.988 | 0.825 | 0.683 | 1e-134 | |
| 356570394 | 413 | PREDICTED: probable S-acyltransferase At | 0.961 | 0.779 | 0.664 | 1e-127 | |
| 356503336 | 413 | PREDICTED: probable S-acyltransferase At | 0.952 | 0.772 | 0.668 | 1e-127 | |
| 224139628 | 349 | predicted protein [Populus trichocarpa] | 0.889 | 0.853 | 0.720 | 1e-127 | |
| 357509139 | 414 | Palmitoyltransferase PFA4 [Medicago trun | 0.937 | 0.758 | 0.665 | 1e-123 | |
| 449453878 | 416 | PREDICTED: probable S-acyltransferase At | 0.952 | 0.766 | 0.632 | 1e-121 | |
| 225440248 | 399 | PREDICTED: probable S-acyltransferase At | 0.925 | 0.776 | 0.653 | 1e-120 | |
| 147844781 | 417 | hypothetical protein VITISV_043756 [Viti | 0.925 | 0.743 | 0.650 | 1e-119 | |
| 147844780 | 616 | hypothetical protein VITISV_043755 [Viti | 0.907 | 0.493 | 0.646 | 1e-117 | |
| 297741731 | 359 | unnamed protein product [Vitis vinifera] | 0.907 | 0.846 | 0.650 | 1e-116 |
| >gi|224089879|ref|XP_002308848.1| predicted protein [Populus trichocarpa] gi|222854824|gb|EEE92371.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/338 (68%), Positives = 278/338 (82%), Gaps = 7/338 (2%)
Query: 1 MLLMIKQENPFFNYPVLIGGLLLTVLDFTFLFMTSGRDPGIIPRNAQPPELDESVDLNTP 60
+LL++++++P ++ PVL+GGL+L ++DF FLFMTSGRDPGIIPRN QPPE DESV + +
Sbjct: 56 LLLLVRKDDPCYDIPVLVGGLVLAIMDFVFLFMTSGRDPGIIPRNCQPPESDESVGIPSQ 115
Query: 61 SIEWISNK--DVKLPRTKDLIVNGHSVRVKFCDTCLLYRPPRASHCSICNNCIQKFDHHC 118
S+EW++NK DVKLPRTKDLIVNGHS++VKFCDTCLLYRPPRASHCSICNNCIQKFDHHC
Sbjct: 116 SMEWVNNKITDVKLPRTKDLIVNGHSIKVKFCDTCLLYRPPRASHCSICNNCIQKFDHHC 175
Query: 119 PWVGQCIGLRNYVSFIFFISTSTFLCLYVFVFSWINIIRQEGDLSSIMRDDLLSVALIVY 178
PWVGQCIG RNY FI FI++ST LC+YVF FSW N++RQ G L S M +D+LSV LI Y
Sbjct: 176 PWVGQCIGRRNYPYFIGFITSSTTLCIYVFAFSWFNVLRQHGTLWSAMSNDVLSVVLIAY 235
Query: 179 CFVAVWFVGGLTVFHFYLICTNQTTYENFRYRYDKKENPFNRGILKNIKELFFSKIPPSM 238
CF+A WFVGGLT+FH YLI TNQTTYENFRYRYDKKENPFNRGI+KN K++FFSKIP S
Sbjct: 236 CFIAFWFVGGLTLFHVYLISTNQTTYENFRYRYDKKENPFNRGIIKNFKQVFFSKIPVSA 295
Query: 239 INFRTWVTEDDDSVAGSAAAEFNEGFIGSKDKFDIEM-GKYGKENDVRLPSILQNLDYSG 297
INFR WVTEDDDS+ G ++ N F+G K KFDIEM GK+GK+ + LPSILQNLDY
Sbjct: 296 INFREWVTEDDDSIKG--GSDINGNFVG-KGKFDIEMGGKFGKDGAMHLPSILQNLDYGS 352
Query: 298 IDDNLKKKEGNGADAFDPYFLPSEQVPKYSPRCSNERT 335
+DDNLKKK G AFDP+ P++Q SP+ S +++
Sbjct: 353 LDDNLKKK-GEEKPAFDPFLFPADQEQPNSPQISIDKS 389
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570394|ref|XP_003553374.1| PREDICTED: probable S-acyltransferase At5g05070-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356503336|ref|XP_003520466.1| PREDICTED: probable S-acyltransferase At5g05070-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224139628|ref|XP_002323200.1| predicted protein [Populus trichocarpa] gi|222867830|gb|EEF04961.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357509139|ref|XP_003624858.1| Palmitoyltransferase PFA4 [Medicago truncatula] gi|355499873|gb|AES81076.1| Palmitoyltransferase PFA4 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449453878|ref|XP_004144683.1| PREDICTED: probable S-acyltransferase At5g05070-like [Cucumis sativus] gi|449516361|ref|XP_004165215.1| PREDICTED: probable S-acyltransferase At5g05070-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225440248|ref|XP_002278657.1| PREDICTED: probable S-acyltransferase At5g05070 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147844781|emb|CAN79043.1| hypothetical protein VITISV_043756 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147844780|emb|CAN79042.1| hypothetical protein VITISV_043755 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297741731|emb|CBI32863.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 335 | ||||||
| TAIR|locus:2175349 | 413 | AT5G05070 "AT5G05070" [Arabido | 0.967 | 0.784 | 0.547 | 4.8e-94 | |
| TAIR|locus:2063172 | 411 | AT2G40990 [Arabidopsis thalian | 0.982 | 0.800 | 0.513 | 8.1e-92 | |
| TAIR|locus:2080555 | 477 | AT3G56930 [Arabidopsis thalian | 0.979 | 0.687 | 0.497 | 8.3e-90 | |
| TAIR|locus:2103650 | 338 | AT3G56920 [Arabidopsis thalian | 0.829 | 0.822 | 0.566 | 8.9e-86 | |
| TAIR|locus:2091960 | 443 | AT3G26935 "AT3G26935" [Arabido | 0.877 | 0.663 | 0.470 | 3.5e-68 | |
| TAIR|locus:2163001 | 410 | AT5G41060 [Arabidopsis thalian | 0.716 | 0.585 | 0.530 | 2.8e-66 | |
| TAIR|locus:2099483 | 476 | AT3G48760 [Arabidopsis thalian | 0.716 | 0.504 | 0.506 | 1.4e-64 | |
| TAIR|locus:2121949 | 407 | AT4G24630 [Arabidopsis thalian | 0.647 | 0.533 | 0.524 | 6.2e-62 | |
| WB|WBGene00012948 | 404 | dhhc-2 [Caenorhabditis elegans | 0.525 | 0.435 | 0.423 | 4.6e-40 | |
| UNIPROTKB|E1BUG4 | 493 | ZDHHC14 "Uncharacterized prote | 0.632 | 0.430 | 0.385 | 6.8e-40 |
| TAIR|locus:2175349 AT5G05070 "AT5G05070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 183/334 (54%), Positives = 226/334 (67%)
Query: 1 MLLMIKQENPFFNYPVLIGGXXXXXXXXXXXXXXSGRDPGIIPRNAQPPELDESVDLN-T 59
ML+ IK+ +PFFNY VL G S RDPGIIPRN L++ D + T
Sbjct: 81 MLVWIKRGDPFFNYTVLASGFILTLLDFTFLMLTSARDPGIIPRNKTSMILEDDSDSSLT 140
Query: 60 PSIEWISNK--DVKLPRTKDLIVNGHSVRVKFCDTCLLYRPPRASHCSICNNCIQKFDHH 117
S+EW++NK ++K+PRTKD+ VNG++++VKFCDTCLLYRPPRASHCSICNNC+Q+FDHH
Sbjct: 141 QSMEWVNNKTPNLKIPRTKDVFVNGYTIKVKFCDTCLLYRPPRASHCSICNNCVQRFDHH 200
Query: 118 CPWVGQCIGLRNYVXXXXXXXXXXXLCLYVFVFSWINIIRQEGDLSSIMRDDLLSVALIV 177
CPWVGQCI RNY LC+YVFVFSWIN+IRQ G L M DD++SV LIV
Sbjct: 201 CPWVGQCIARRNYPFFICFISSSTLLCIYVFVFSWINLIRQPGKLWRTMSDDIVSVILIV 260
Query: 178 YCFVAVWFVGGLTVFHFYLICTNQTTYENFRYRYDKKENPFNRGILKNIKELFFSKIPPS 237
Y FVAVWFVGGLT+FHFYL+ TNQTTYENFRYRYDKKENP+ RG+LKN+KE+ F+KIPPS
Sbjct: 261 YTFVAVWFVGGLTIFHFYLMSTNQTTYENFRYRYDKKENPYKRGLLKNVKEVLFAKIPPS 320
Query: 238 MINFRTWVTEDDDSVAGSAAAEFNEGFIGSKDKFDIEMG-KYGKENDVR-LPSILQNLD- 294
++ R V E+DD S +E+ + S ++D EMG K K + R LP +NLD
Sbjct: 321 QLDLRAMVPEEDDMTIASNDSEYESEYTSSV-RYDTEMGGKLIKRDSPRKLPLPTRNLDD 379
Query: 295 YSGIDDNLKKKEGNGADAFD--PYFLPSE-QVPK 325
I DN + DA D P F S+ +PK
Sbjct: 380 IKDISDNYDRSTTTREDASDRDPSFFSSQLDLPK 413
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| TAIR|locus:2063172 AT2G40990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080555 AT3G56930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2103650 AT3G56920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2091960 AT3G26935 "AT3G26935" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2163001 AT5G41060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2099483 AT3G48760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121949 AT4G24630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00012948 dhhc-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BUG4 ZDHHC14 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 335 | |||
| pfam01529 | 167 | pfam01529, zf-DHHC, DHHC palmitoyltransferase | 5e-43 | |
| COG5273 | 309 | COG5273, COG5273, Uncharacterized protein containi | 6e-31 |
| >gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 5e-43
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 28 FTFLFMTSGRDPGIIPRNAQPPELDESVDLNTPSIEWISNKDVKLPRTKDLIVNGHSVRV 87
F T DPG +P+N E ++ D +
Sbjct: 1 LWSYFKTIFTDPGYVPKNPTEKEQEKQPDEE-------------------SEEGDEEDEL 41
Query: 88 KFCDTCLLYRPPRASHCSICNNCIQKFDHHCPWVGQCIGLRNYVSFIFFISTSTFLCLYV 147
KFC TC + +PPR+ HC +CN C+ +FDHHCPW+ CIG RN+ F+ F+ T + +
Sbjct: 42 KFCSTCNIIKPPRSHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYLILL 101
Query: 148 FVFSWI---NIIRQEGDLSSIMRDDLLSVALIVYCFVAVWFVGGLTVFHFYLICTNQTTY 204
V S+ +IR ++ S+ L+V + F+ L FH YLI N TTY
Sbjct: 102 LVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLILKNITTY 161
Query: 205 ENFRYR 210
E + +
Sbjct: 162 EYIKKK 167
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This family includes the well known DHHC zinc binding domain as well as three of the four conserved transmembrane regions found in this family of palmitoyltransferase enzymes. Length = 167 |
| >gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn finger [General function prediction only] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 335 | |||
| KOG1311 | 299 | consensus DHHC-type Zn-finger proteins [General fu | 100.0 | |
| KOG1315 | 307 | consensus Predicted DHHC-type Zn-finger protein [G | 100.0 | |
| PF01529 | 174 | zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0 | 100.0 | |
| KOG1314 | 414 | consensus DHHC-type Zn-finger protein [General fun | 100.0 | |
| COG5273 | 309 | Uncharacterized protein containing DHHC-type Zn fi | 100.0 | |
| KOG1313 | 309 | consensus DHHC-type Zn-finger proteins [General fu | 100.0 | |
| KOG1312 | 341 | consensus DHHC-type Zn-finger proteins [General fu | 99.97 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.94 | |
| COG5273 | 309 | Uncharacterized protein containing DHHC-type Zn fi | 94.9 | |
| PF01529 | 174 | zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR0 | 94.29 | |
| KOG1311 | 299 | consensus DHHC-type Zn-finger proteins [General fu | 91.15 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 82.96 |
| >KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=354.59 Aligned_cols=218 Identities=37% Similarity=0.716 Sum_probs=174.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhc---CCcccCCCCCCCCccccccCCCCchhhcccCCCCCCcccceeecCceece
Q 019856 11 FFNYPVLIGGLLLTVLDFTFLFMTSGR---DPGIIPRNAQPPELDESVDLNTPSIEWISNKDVKLPRTKDLIVNGHSVRV 87 (335)
Q Consensus 11 ~~~~~~~~~~~~l~il~l~~l~~t~~~---DPG~vPr~~~~~~~~e~~~~~~~~~~~~~~~~~~~p~~k~~~v~g~~~~~ 87 (335)
.++..+.+.+.++.++.++.+..++++ |||++|++..+..+.. .+.+++++..++|..++.
T Consensus 50 ~~~~~~~~~~~if~~~~~~~~~~~~~~~~sdpg~~p~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 113 (299)
T KOG1311|consen 50 GVSPAVLVLGAIFFLLNILNLMLACFRMLSDPGIVPRADDEQIEDP----------------ERAPLYKNVDVNGIQVEW 113 (299)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccCCCceecCcccCCCCCc----------------cccccCCCcccCCcccce
Confidence 455667777777777778888888777 9999999752111000 034667888899999999
Q ss_pred eeccccccccCCCCccCCCCCcccccccccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----Ccc
Q 019856 88 KFCDTCLLYRPPRASHCSICNNCIQKFDHHCPWVGQCIGLRNYVSFIFFISTSTFLCLYVFVFSWINIIRQEG----DLS 163 (335)
Q Consensus 88 k~C~tC~~~kP~Rs~HC~~C~~CV~r~DHHCpWi~nCIG~~N~r~F~lFl~~~~~~~~~~~~~~~~~~~~~~~----~~~ 163 (335)
+||.+|+.+||||||||++||+||+||||||||+|||||+||||+|++|+++.++.+++.+++.++.+..... ...
T Consensus 114 ~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 193 (299)
T KOG1311|consen 114 KYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADNLKVNLT 193 (299)
T ss_pred EEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999888777554221 122
Q ss_pred --hhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcceeeeee-eccCCCCCCCCHhHHHHHHHhcCCCCCCCCcc
Q 019856 164 --SIMRDDLLSVALIVYCFVAVWFVGGLTVFHFYLICTNQTTYENFR-YRYDKKENPFNRGILKNIKELFFSKIPPSMIN 240 (335)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~v~~l~~~hlylI~~N~TT~E~~~-~~~~~~~npy~~G~~~N~~~vf~~~~~~~~~~ 240 (335)
.........++++++++++++++++|+.+|+++|.+|+||+|.++ ++...++++|++|.++|++++||.+.++++..
T Consensus 194 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~ 273 (299)
T KOG1311|consen 194 PVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSLDFVSRSNPYDLGLLKNLQEVFGGPLPLSWLS 273 (299)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhccccccccCCCchhHHHHHHHHhCCCCCccccc
Confidence 122223344566677888888899999999999999999999987 34444469999999999999999998887766
Q ss_pred CCcc
Q 019856 241 FRTW 244 (335)
Q Consensus 241 ~~~~ 244 (335)
....
T Consensus 274 p~~~ 277 (299)
T KOG1311|consen 274 PFAR 277 (299)
T ss_pred cccc
Confidence 5543
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| >KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
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| >PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
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| >KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only] | Back alignment and domain information |
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| >COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only] | Back alignment and domain information |
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| >KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only] | Back alignment and domain information |
|---|
| >PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 335 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 1e-04
Identities = 52/347 (14%), Positives = 109/347 (31%), Gaps = 92/347 (26%)
Query: 22 LLTVLDFTFLFMTSGR--DPGIIPRNAQPPELDESVDLNTPSIEWISNKDVKLPRTKDLI 79
+ +DF ++ P + Q +L +D N W S D + ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPN-----WTSRSD----HSSNIK 224
Query: 80 VNGHSVRVKFCDTCLLYRPPRASHC-----SICN-NCIQKFDHHCPWVGQCIGLRNYVSF 133
+ HS++ + LL P +C ++ N F+ C + + +
Sbjct: 225 LRIHSIQAELRR--LLKSKPYE-NCLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQV 277
Query: 134 IFFISTSTFLCLYV------F-------VFS-WINIIRQEGDLSSIMRD-DLLSVALIVY 178
F+S +T + + + +++ Q DL + + +++I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLSIIAE 335
Query: 179 CFVAVWFVGGLTVFHFYLICTNQTTYENFR-YRYDKKENPFNRGI--LK--NIKELF--- 230
I T++N++ DK + L+ +++F
Sbjct: 336 -----------------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 231 --F---SKIPPSMINFRTWVTEDDDSVAGSAAAEFNEGFIGSKDKFDIEMGKYGKENDVR 285
F + IP +++ W + S + +E K KE+ +
Sbjct: 379 SVFPPSAHIPTILLS-LIW-FDVIKSDVMVVVNKL-------HKYSLVE--KQPKESTIS 427
Query: 286 LPSILQNLDYSGIDDNLKKKEG------NGADAFDPYFLPSEQVPKY 326
+PSI L+ +N N FD L + +Y
Sbjct: 428 IPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 335 | |||
| d2ayja1 | 56 | Ribosomal protein L40e {Sulfolobus solfataricus [T | 82.29 |
| >d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Rubredoxin-like superfamily: Zn-binding ribosomal proteins family: Ribosomal protein L40e domain: Ribosomal protein L40e species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.29 E-value=0.29 Score=32.18 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=22.8
Q ss_pred ceeeccccccccCCCCccCCCCCcccc
Q 019856 86 RVKFCDTCLLYRPPRASHCSICNNCIQ 112 (335)
Q Consensus 86 ~~k~C~tC~~~kP~Rs~HC~~C~~CV~ 112 (335)
..+.|..|...-|+|+..|+.||.=-+
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~~nL 44 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hhHHHhhccccCCccccccccCCCCCc
Confidence 467999999999999999998876433
|