Citrus Sinensis ID: 019858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Secondary Structure (PSIPRED)
ccccEEEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEcccccccccccEEEEEcccEEEEcccccccccEEEEEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEccccccccccccEEEEEEEcccHHHHHHHHHcccccccccccccccEEEEEEEccEEEEEEEEEEcccccccccccEEEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEcccccccccccEEEEEEccHHHHHHcccccccccccEEEEEcccEEEEccccEEEcccEEEEEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccEEEccccccccHHHccccccccccccccccccccccccccEEEEEcccEEEEEHHcccccccccccHHHEEEEEEcccHHHHHHHHHcccccccccccEccccEEEEEEccccEEEEEEccccccccccccccEEEEEEEEEccccEEEEEEccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYykkkpqdnqvpiktllidgncrvedrglkthhghMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQesqvsngnKYVSFEYksgmdngrngsssdhesqfsaqededdghlNLMRrttigngppdlvhdwtreldsdlsnqninnqAFSRKHWRLLQCQNGLRIFEELlevdylprscsRAMKAVGVVEASCEEIFELVMSmdgtryewdcsfqygslveevDGHTAILYHRLqldwfpmfvwprdlcyvrywrrnddgsygsmrtvvhnqdmyELTWRVVDSTFPH
Flexible Loop (DISEMBL)
msskvvyegwmvrygrrkigrsfiHMRYFVLESRLLAYykkkpqdnqvpiktllidGNCRVEDRglkthhghmVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQhqesqvsngNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Low Complexity Region (SEG)
MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Disordered region (IsUnstruct)
****VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ*************************************************************LVHDWTRE********NINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVD*****
Disordered Region (DISOPRED)
****VVY*GWMVRYGRRKIGRSFIHMRYFVLESRLLAY**************LLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI**********************************************************************************NQAFSRKHWRLLQCQNGLRIFEE************RAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVV*N**MYELTWRVVDSTFP*
Disordered Region (DISEMBL)
MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDN********************DGHLNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Disordered Region (DISPRO)
**SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKS***************************LNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTWRVVDSTFPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
255557651	727	lipid binding protein, putative [Ricinus	0.916	0.422	0.928	1e-173
356496432	725	PREDICTED: uncharacterized protein LOC10	0.922	0.426	0.899	1e-168
357484695	725	Kinase-START [Medicago truncatula] gi|35	0.922	0.426	0.903	1e-167
449456757	724	PREDICTED: uncharacterized protein LOC10	0.913	0.422	0.902	1e-167
225427393	716	PREDICTED: uncharacterized protein LOC10	0.922	0.431	0.893	1e-165
297800150	718	hypothetical protein ARALYDRAFT_492951 [	0.916	0.427	0.889	1e-165
42566947	718	enhanced disease resistance 2 protein [A	0.916	0.427	0.885	1e-165
224139070	725	predicted protein [Populus trichocarpa]	0.946	0.437	0.858	1e-164
225427395	722	PREDICTED: uncharacterized protein LOC10	0.922	0.427	0.876	1e-164
359474679	715	PREDICTED: uncharacterized protein LOC10	0.922	0.432	0.876	1e-164

>gi|255557651|ref|XP_002519855.1| lipid binding protein, putative [Ricinus communis] gi|223540901|gb|EEF42459.1| lipid binding protein, putative [Ricinus communis]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/307 (92%), Positives = 296/307 (96%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK+KPQDNQVPIKT+LIDGNCRVE
Sbjct: 2   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTMLIDGNCRVE 61

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
           DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE VIDQHQESQV NGN
Sbjct: 62  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIEFVIDQHQESQVVNGN 121

Query: 123 KYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTREL 182
           KY+SFEYKSGMDNGR  SSSDHESQFSAQEDEDD + NL+RRTTIGNGPPD V DWTRE+
Sbjct: 122 KYISFEYKSGMDNGRTASSSDHESQFSAQEDEDDANPNLLRRTTIGNGPPDSVLDWTREV 181

Query: 183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE 242
           DS+LS QN NNQAFSRKHWRLLQCQNGLRIFEEL+EVDYLPRSCSRAMKAVGVVEA+CEE
Sbjct: 182 DSELSTQNANNQAFSRKHWRLLQCQNGLRIFEELVEVDYLPRSCSRAMKAVGVVEATCEE 241

Query: 243 IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302
           IFELVMSMDGTR+EWDCSFQYGSLVEEVDGHTAILYHRLQLDWFP F+WPRDLCYVRYWR
Sbjct: 242 IFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPAFIWPRDLCYVRYWR 301

Query: 303 RNDDGSY 309
           RNDDGSY
Sbjct: 302 RNDDGSY 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496432|ref|XP_003517072.1| PREDICTED: uncharacterized protein LOC100806401 [Glycine max]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/309 (89%), Positives = 294/309 (95%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK+KPQDNQVPIKTLLIDGNCR
Sbjct: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTLLIDGNCR 60

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           V+DRGLKTHHGHMVYVLSVYNKKEK HRI MAAFNIQEALIWKEKIE VIDQHQ +Q SN
Sbjct: 61  VDDRGLKTHHGHMVYVLSVYNKKEKNHRIMMAAFNIQEALIWKEKIEYVIDQHQGAQPSN 120

Query: 121 GNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTR 180
           GNKY+SFEYKSGMDNG+  SSSD ESQFSAQEDED+ H NL+RRTTIGNGPP+ V DWTR
Sbjct: 121 GNKYISFEYKSGMDNGKTASSSDRESQFSAQEDEDEPHPNLLRRTTIGNGPPESVFDWTR 180

Query: 181 ELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASC 240
           E+DSDLSNQNINNQAFSRKHWRLLQCQ+GLR FEEL EVDYLPRSCS+AMKAVGVVEA+C
Sbjct: 181 EIDSDLSNQNINNQAFSRKHWRLLQCQDGLRTFEELGEVDYLPRSCSKAMKAVGVVEATC 240

Query: 241 EEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY 300
           EEIF+LVMSMDGTR+EWDCSF +GSLVEEVDGHTA+LYHRLQLDWFPMFVWPRDLCYVRY
Sbjct: 241 EEIFKLVMSMDGTRFEWDCSFLHGSLVEEVDGHTAVLYHRLQLDWFPMFVWPRDLCYVRY 300

Query: 301 WRRNDDGSY 309
           WRRNDDGSY
Sbjct: 301 WRRNDDGSY 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484695|ref|XP_003612635.1| Kinase-START [Medicago truncatula] gi|355513970|gb|AES95593.1| Kinase-START [Medicago truncatula]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/311 (90%), Positives = 294/311 (94%), Gaps = 2/311 (0%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK+KPQDNQVPIKTLLIDGNCR
Sbjct: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTLLIDGNCR 60

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRIT-MAAFNIQEALIWKEKIELVIDQHQESQVS 119
           VEDRGLKTHHGHMVYVLSVYNKKEK HR+  MAAFNIQEALIWKEKIE VIDQHQ +Q S
Sbjct: 61  VEDRGLKTHHGHMVYVLSVYNKKEKNHRVMQMAAFNIQEALIWKEKIEYVIDQHQGAQPS 120

Query: 120 NGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDD-GHLNLMRRTTIGNGPPDLVHDW 178
           NGNKY+SFEYKSGMDNG+  SSSD ESQFSAQEDEDD  H NL+RRTTIGNGPP+ + DW
Sbjct: 121 NGNKYISFEYKSGMDNGKTASSSDRESQFSAQEDEDDEPHSNLLRRTTIGNGPPESIFDW 180

Query: 179 TRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA 238
           TRE+DSDLSNQN+NNQAFSRKHWRLLQCQNGLR+FEELLEVDYLPRS SRAMKAVGVVEA
Sbjct: 181 TREIDSDLSNQNVNNQAFSRKHWRLLQCQNGLRVFEELLEVDYLPRSYSRAMKAVGVVEA 240

Query: 239 SCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYV 298
           SCEEIFELVMSMDGTR+EWDCSFQ G LVEEVDGHTA+LYHRLQLDWFPMFVWPRDLCYV
Sbjct: 241 SCEEIFELVMSMDGTRFEWDCSFQEGRLVEEVDGHTAVLYHRLQLDWFPMFVWPRDLCYV 300

Query: 299 RYWRRNDDGSY 309
           RYWRRNDDGSY
Sbjct: 301 RYWRRNDDGSY 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456757|ref|XP_004146115.1| PREDICTED: uncharacterized protein LOC101209463 [Cucumis sativus] gi|449509520|ref|XP_004163612.1| PREDICTED: uncharacterized LOC101209463 [Cucumis sativus]

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/309 (90%), Positives = 292/309 (94%), Gaps = 3/309 (0%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKT+LIDGNCR
Sbjct: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTMLIDGNCR 60

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEAL+WKEKIELVID HQ SQV N
Sbjct: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALLWKEKIELVIDLHQGSQVPN 120

Query: 121 GNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTR 180
           GNK+VSFEYKSGMDNGR  SSSDHESQ SAQEDEDD H NL+RRTTIGNGPP+ V DWTR
Sbjct: 121 GNKFVSFEYKSGMDNGRTASSSDHESQMSAQEDEDDAHPNLLRRTTIGNGPPESVFDWTR 180

Query: 181 ELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASC 240
           E+ SD SNQN N+QAFSRKHWRL+QCQNGLRIFEEL+EVDYLPRS SRAMKAVGVVEA+C
Sbjct: 181 EIGSDFSNQNANSQAFSRKHWRLVQCQNGLRIFEELVEVDYLPRSYSRAMKAVGVVEATC 240

Query: 241 EEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY 300
           E+IFELVMSMDGTR+EWDCSFQYGSLVEEVDGHTAILYHRLQLDW   FVWPRDLCYVRY
Sbjct: 241 EQIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDW---FVWPRDLCYVRY 297

Query: 301 WRRNDDGSY 309
           WRRNDDG+Y
Sbjct: 298 WRRNDDGNY 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427393|ref|XP_002262725.1| PREDICTED: uncharacterized protein LOC100246589 isoform 1 [Vitis vinifera]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/309 (89%), Positives = 294/309 (95%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           ++SKVVYEGWMVR GRRKIGRS+IHMRYFVLESRLLAYYK+KPQ N VPIKTLLIDGNCR
Sbjct: 2   VASKVVYEGWMVRCGRRKIGRSYIHMRYFVLESRLLAYYKRKPQHNVVPIKTLLIDGNCR 61

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           VEDRGLKTHHG+MVYVLS+YNKKEKYHRITMAAFNIQEAL+WKEKIE VIDQHQ+ QV+N
Sbjct: 62  VEDRGLKTHHGYMVYVLSIYNKKEKYHRITMAAFNIQEALLWKEKIESVIDQHQDLQVAN 121

Query: 121 GNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTR 180
           GNKY+SFEYKSGMDNGR  SSSDHESQFSAQ+DE+D H +L+RR TIGNG PD V DWTR
Sbjct: 122 GNKYISFEYKSGMDNGRAASSSDHESQFSAQDDEEDTHRDLVRRKTIGNGIPDSVLDWTR 181

Query: 181 ELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASC 240
           E+DS+LSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA+C
Sbjct: 182 EIDSELSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATC 241

Query: 241 EEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY 300
           EEIFELVMSMDG R+EWDCSFQ GSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY
Sbjct: 242 EEIFELVMSMDGKRFEWDCSFQDGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY 301

Query: 301 WRRNDDGSY 309
           WRRNDDGSY
Sbjct: 302 WRRNDDGSY 310

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800150|ref|XP_002867959.1| hypothetical protein ARALYDRAFT_492951 [Arabidopsis lyrata subsp. lyrata] gi|297313795|gb|EFH44218.1| hypothetical protein ARALYDRAFT_492951 [Arabidopsis lyrata subsp. lyrata]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 273/307 (88%), Positives = 288/307 (93%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           SKVVYEGWMVRYGRRKIGRS+IHMRYFVLE RLLAYYKKKPQD QVPIKT+LIDGNCRVE
Sbjct: 2   SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVE 61

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
           DRGLKTHHGHMVYVLSVYNKKEK HRITMAAFNIQEAL+WKEKIE VIDQHQESQV NG 
Sbjct: 62  DRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQ 121

Query: 123 KYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTREL 182
           +YVSFEYKSGMD GR  SSSDHESQFSA EDE+D   +LMRRTTIGNGPP+ V DWT+E 
Sbjct: 122 QYVSFEYKSGMDTGRTASSSDHESQFSAPEDEEDSRRSLMRRTTIGNGPPESVLDWTKEF 181

Query: 183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE 242
           D++L+NQN NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA+CE+
Sbjct: 182 DAELANQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCED 241

Query: 243 IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302
           IFEL+MSMDGTRYEWDCSFQYGSLVEEVDGHTA+LYHRL LDWFPM VWPRDLCYVRYWR
Sbjct: 242 IFELLMSMDGTRYEWDCSFQYGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDLCYVRYWR 301

Query: 303 RNDDGSY 309
           RNDDGSY
Sbjct: 302 RNDDGSY 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566947|ref|NP_193639.2| enhanced disease resistance 2 protein [Arabidopsis thaliana] gi|332658730|gb|AEE84130.1| enhanced disease resistance 2 protein [Arabidopsis thaliana]

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 272/307 (88%), Positives = 288/307 (93%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           SKVVYEGWMVRYGRRKIGRS+IHMRYFVLE RLLAYYKKKPQD QVPIKT+LIDGNCRVE
Sbjct: 2   SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVE 61

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
           DRGLKTHHGHMVYVLSVYNKKEK HRITMAAFNIQEAL+WKEKIE VIDQHQESQV NG 
Sbjct: 62  DRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQ 121

Query: 123 KYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTREL 182
           +YVSFEYKSGMD GR  SSSDHESQFSA EDE+D   +LMRRTTIGNGPP+ V DWT+E 
Sbjct: 122 QYVSFEYKSGMDTGRTASSSDHESQFSAAEDEEDSRRSLMRRTTIGNGPPESVLDWTKEF 181

Query: 183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE 242
           D++L+NQN +NQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA+CEE
Sbjct: 182 DAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEE 241

Query: 243 IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302
           IFEL+MSMDGTRYEWDCSFQ+GSLVEEVDGHTA+LYHRL LDWFPM VWPRDLCYVRYWR
Sbjct: 242 IFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDLCYVRYWR 301

Query: 303 RNDDGSY 309
           RNDDGSY
Sbjct: 302 RNDDGSY 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139070|ref|XP_002326760.1| predicted protein [Populus trichocarpa] gi|222834082|gb|EEE72559.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/318 (85%), Positives = 291/318 (91%), Gaps = 1/318 (0%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           SKV++EGWMVRYGRRKIGRSFIHMRYFVLE  LLAYYKKKP+DNQVPIKTLLIDGNCRVE
Sbjct: 2   SKVIFEGWMVRYGRRKIGRSFIHMRYFVLEPTLLAYYKKKPEDNQVPIKTLLIDGNCRVE 61

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
           DRGLKT HGHMVYVLSVYNKK+KY+RITMAAFNIQE L+WK KIE VIDQHQESQV NGN
Sbjct: 62  DRGLKTQHGHMVYVLSVYNKKDKYNRITMAAFNIQEQLMWKGKIEFVIDQHQESQVPNGN 121

Query: 123 KYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTREL 182
           KY SFEYKSGMDNGR  SSSD E QF AQEDED+ H NL+RRTTIGNGPP  V DWT+E 
Sbjct: 122 KYASFEYKSGMDNGRTASSSDCEIQFIAQEDEDESHTNLLRRTTIGNGPPASVFDWTQEF 181

Query: 183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE 242
           DSDL+NQN NNQAFSRKHWRLLQCQNGLRIFEELLEV+YLPRSCSRAMKAVGVVEASCEE
Sbjct: 182 DSDLTNQNANNQAFSRKHWRLLQCQNGLRIFEELLEVEYLPRSCSRAMKAVGVVEASCEE 241

Query: 243 IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302
           IFEL+MSMD  R+EWDCSFQ+GSLVEEVDGHTAILYHRLQLDWFP+FVWPRDLCYVRYWR
Sbjct: 242 IFELIMSMDAKRFEWDCSFQHGSLVEEVDGHTAILYHRLQLDWFPIFVWPRDLCYVRYWR 301

Query: 303 RNDDGSYGSM-RTVVHNQ 319
           RNDDGSY  + R+ VH +
Sbjct: 302 RNDDGSYVVLFRSRVHEK 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427395|ref|XP_002262787.1| PREDICTED: uncharacterized protein LOC100246589 isoform 3 [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/315 (87%), Positives = 294/315 (93%), Gaps = 6/315 (1%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           ++SKVVYEGWMVR GRRKIGRS+IHMRYFVLESRLLAYYK+KPQ N VPIKTLLIDGNCR
Sbjct: 2   VASKVVYEGWMVRCGRRKIGRSYIHMRYFVLESRLLAYYKRKPQHNVVPIKTLLIDGNCR 61

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           VEDRGLKTHHG+MVYVLS+YNKKEKYHRITMAAFNIQEAL+WKEKIE VIDQHQ+ QV+N
Sbjct: 62  VEDRGLKTHHGYMVYVLSIYNKKEKYHRITMAAFNIQEALLWKEKIESVIDQHQDLQVAN 121

Query: 121 GNKYVSFEYKSGMDNGRNGSSSDHESQ------FSAQEDEDDGHLNLMRRTTIGNGPPDL 174
           GNKY+SFEYKSGMDNGR  SSSDHESQ      FSAQ+DE+D H +L+RR TIGNG PD 
Sbjct: 122 GNKYISFEYKSGMDNGRAASSSDHESQNSIIVRFSAQDDEEDTHRDLVRRKTIGNGIPDS 181

Query: 175 VHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG 234
           V DWTRE+DS+LSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG
Sbjct: 182 VLDWTREIDSELSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG 241

Query: 235 VVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD 294
           VVEA+CEEIFELVMSMDG R+EWDCSFQ GSLVEEVDGHTAILYHRLQLDWFPMFVWPRD
Sbjct: 242 VVEATCEEIFELVMSMDGKRFEWDCSFQDGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD 301

Query: 295 LCYVRYWRRNDDGSY 309
           LCYVRYWRRNDDGSY
Sbjct: 302 LCYVRYWRRNDDGSY 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474679|ref|XP_003631511.1| PREDICTED: uncharacterized protein LOC100246589 [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/315 (87%), Positives = 294/315 (93%), Gaps = 6/315 (1%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           ++SKVVYEGWMVR GRRKIGRS+IHMRYFVLESRLLAYYK+KPQ N VPIKTLLIDGNCR
Sbjct: 2   VASKVVYEGWMVRCGRRKIGRSYIHMRYFVLESRLLAYYKRKPQHNVVPIKTLLIDGNCR 61

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           VEDRGLKTHHG+MVYVLS+YNKKEKYHRITMAAFNIQEAL+WKEKIE VIDQHQ+ QV+N
Sbjct: 62  VEDRGLKTHHGYMVYVLSIYNKKEKYHRITMAAFNIQEALLWKEKIESVIDQHQDLQVAN 121

Query: 121 GNKYVSFEYKSGMDNGRNGSSSDHESQ------FSAQEDEDDGHLNLMRRTTIGNGPPDL 174
           GNKY+SFEYKSGMDNGR  SSSDHESQ      FSAQ+DE+D H +L+RR TIGNG PD 
Sbjct: 122 GNKYISFEYKSGMDNGRAASSSDHESQNSIIVRFSAQDDEEDTHRDLVRRKTIGNGIPDS 181

Query: 175 VHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG 234
           V DWTRE+DS+LSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG
Sbjct: 182 VLDWTREIDSELSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVG 241

Query: 235 VVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD 294
           VVEA+CEEIFELVMSMDG R+EWDCSFQ GSLVEEVDGHTAILYHRLQLDWFPMFVWPRD
Sbjct: 242 VVEATCEEIFELVMSMDGKRFEWDCSFQDGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD 301

Query: 295 LCYVRYWRRNDDGSY 309
           LCYVRYWRRNDDGSY
Sbjct: 302 LCYVRYWRRNDDGSY 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2117134	724	EDR2 "ENHANCED DISEASE RESISTA	0.916	0.424	0.869	2.6e-150
TAIR|locus:2163548	719	AT5G45560 [Arabidopsis thalian	0.916	0.426	0.856	7.1e-148
TAIR|locus:2102465	733	AT3G54800 [Arabidopsis thalian	0.397	0.181	0.404	6.7e-34
TAIR|locus:2057547	737	AT2G28320 [Arabidopsis thalian	0.420	0.191	0.406	1e-31
TAIR|locus:2182417	811	AT5G35180 [Arabidopsis thalian	0.892	0.368	0.264	7.6e-21

TAIR|locus:2117134 EDR2 "ENHANCED DISEASE RESISTANCE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
 Identities = 272/313 (86%), Positives = 288/313 (92%)

Query:     3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
             SKVVYEGWMVRYGRRKIGRS+IHMRYFVLE RLLAYYKKKPQD QVPIKT+LIDGNCRVE
Sbjct:     2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDYQVPIKTMLIDGNCRVE 61

Query:    63 DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
             DRGLKTHHGHMVYVLSVYNKKEK HRITMAAFNIQEAL+WKEKIE VIDQHQESQV NG 
Sbjct:    62 DRGLKTHHGHMVYVLSVYNKKEKSHRITMAAFNIQEALMWKEKIESVIDQHQESQVPNGQ 121

Query:   123 KYVSFEYKSGMDNGRNGSSSDHESQ------FSAQEDEDDGHLNLMRRTTIGNGPPDLVH 176
             +YVSFEYKSGMD GR  SSSDHESQ      FSA EDE+D   +LMRRTTIGNGPP+ V 
Sbjct:   122 QYVSFEYKSGMDTGRTASSSDHESQSAISFRFSAAEDEEDSRRSLMRRTTIGNGPPESVL 181

Query:   177 DWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV 236
             DWT+E D++L+NQN +NQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV
Sbjct:   182 DWTKEFDAELANQNSDNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV 241

Query:   237 EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLC 296
             EA+CEEIFEL+MSMDGTRYEWDCSFQ+GSLVEEVDGHTA+LYHRL LDWFPM VWPRDLC
Sbjct:   242 EATCEEIFELLMSMDGTRYEWDCSFQFGSLVEEVDGHTAVLYHRLLLDWFPMIVWPRDLC 301

Query:   297 YVRYWRRNDDGSY 309
             YVRYWRRNDDGSY
Sbjct:   302 YVRYWRRNDDGSY 314

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2163548 AT5G45560 [Arabidopsis thaliana (taxid:3702)]

 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 263/307 (85%), Positives = 284/307 (92%)

Query:     3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
             SKVVYEGWMVRYGRRKIGRS+IHMRYFVLE RLLAYYKKKPQDNQ+PIKT++IDGNCRVE
Sbjct:     2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLEPRLLAYYKKKPQDNQLPIKTMVIDGNCRVE 61

Query:    63 DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGN 122
             DRGLKTHHGHMVYVLS+YNKKEK+HRITMAAFNIQEAL+WKEKIE VIDQHQ+S V +G 
Sbjct:    62 DRGLKTHHGHMVYVLSIYNKKEKHHRITMAAFNIQEALMWKEKIECVIDQHQDSLVPSGQ 121

Query:   123 KYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTREL 182
             +YVSFEYK GMD GR  SSSDHES FSA EDE+D   +L+RRTTIGNGPP+ + DWT+E 
Sbjct:   122 QYVSFEYKPGMDAGRTASSSDHESPFSALEDENDSQRDLLRRTTIGNGPPESILDWTKEF 181

Query:   183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE 242
             D++LSNQ+ +NQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA+CEE
Sbjct:   182 DAELSNQSSSNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEE 241

Query:   243 IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302
             IFELVMSMDGTRYEWDCSF  G LVEEVDGHTAILYHRL LDWFPM VWPRDLCYVRYWR
Sbjct:   242 IFELVMSMDGTRYEWDCSFHNGRLVEEVDGHTAILYHRLLLDWFPMVVWPRDLCYVRYWR 301

Query:   303 RNDDGSY 309
             RNDDGSY
Sbjct:   302 RNDDGSY 308

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008289 "lipid binding" evidence=ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
 Identities = 57/141 (40%), Positives = 83/141 (58%)

Query:   177 DWTRELDSDLSNQNIN---NQA---FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSR-- 228
             DWT    ++ S+ ++N   N A    +   W++  CQNGLR+F+E  + D   R      
Sbjct:   150 DWTNYSSTNYSSTSLNVETNVAPDVIAPSPWKIFGCQNGLRLFKEAKDWDSRGRHWDDHP 209

Query:   229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPM 288
             A+ AVGV++ + E+IF  +MS+   R EWD  F  G++VE +DGHT I++ +L  DW P 
Sbjct:   210 AIMAVGVIDGTSEDIFNTLMSLGPLRSEWDFCFYKGNVVEHLDGHTDIIHLQLYSDWLPW 269

Query:   289 FVWPRDLCYVRYWRRNDDGSY 309
              +  RDL   RYWRR DDG+Y
Sbjct:   270 GMNRRDLLLRRYWRREDDGTY 290

GO:0005543 "phospholipid binding" evidence=IEA

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
 Identities = 59/145 (40%), Positives = 82/145 (56%)

Query:   177 DWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSR-AMKAVGV 235
             DWT  L S      +     +   W +  CQNGLR+F+E  E D L R     A+ AVGV
Sbjct:   153 DWT--LRSSARVDPVTTDVVAPSPWTIFGCQNGLRLFKEAKERDSLGRWDDHPAIMAVGV 210

Query:   236 VEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDL 295
             V+ + E IF+ ++S+  +R EWD  F  GS+VE +DGHT I++ +L  DW P  +  RD 
Sbjct:   211 VDGTSETIFQTLLSLGPSRSEWDFCFYQGSVVEHLDGHTDIIHKQLYSDWLPWGMKRRDF 270

Query:   296 CYVRYWRRNDDGSYGSM-RTVVHNQ 319
                RYWRR DDG+Y  +  +V H +
Sbjct:   271 SLRRYWRREDDGTYVILYHSVFHKK 295

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2182417 AT5G35180 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 88/333 (26%), Positives = 147/333 (44%)

Query:     7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ--VPIKTLLIDGNCRVEDR 64
             Y GW+   G  KIG  + ++R+  +  + +  YK+ P +N    PI+  +I     +E+ 
Sbjct:    60 YFGWVYHLGVNKIGHEYCNLRFLFIRGKYVEMYKRDPHENPDIKPIRRGVIGPTMVIEEL 119

Query:    65 GL-KTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNK 123
             G  K +HG  VYV+  YN+ ++  +  +A     EAL W E  E    Q  E  +S G  
Sbjct:   120 GRRKVNHGD-VYVIRFYNRLDESRKGEIACATAGEALKWVEAFEEA-KQQAEYALSRGG- 176

Query:   124 YVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRELD 183
               S   K  M+     ++ D E           G   L+R   IG GP  L+   +  L 
Sbjct:   177 --STRTKLSME-----ANIDLEGHRPRVRRYAYGLKKLIR---IGQGPESLLRQ-SSTLV 225

Query:   184 SDLSNQNI-----NNQAFSRKHWRLLQCQNGL-RIFEELLEV-------DYLPRSCSRAM 230
             +D+          N  A     W+ ++  N + R+F +++ +       D       R +
Sbjct:   226 NDVRGDGFYEGGDNGDAIEAHEWKCVRTINVIKRLFGKIVVLKRVRIFEDVANFKAGRGV 285

Query:   231 --KAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFP 287
               KAV VVEAS + +FE+++++D   RYEWD        ++  +GH  ++Y      +  
Sbjct:   286 LVKAVAVVEASADTVFEVLLNIDKHQRYEWDAVTGDSEKIDSYEGHYDVIYCIYDPKYLS 345

Query:   288 MFVWPRDLCYVRYWRRNDDGSYGSMR-TVVHNQ 319
              +   RD  + R W R  DG+Y  ++   VH +
Sbjct:   346 RWQSKRDFVFSRQWVRGQDGTYTILQFPAVHKK 378


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       335   0.00092  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  275 KB (2144 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.35u 0.10s 29.45t   Elapsed:  00:00:01
  Total cpu time:  29.35u 0.10s 29.45t   Elapsed:  00:00:01
  Start:  Mon May 20 20:29:37 2013   End:  Mon May 20 20:29:38 2013

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
PLN00188	719	PLN00188, PLN00188, enhanced disease resistance pr	0.0
cd00177	193	cd00177, START, Lipid-binding START domain of mamm	7e-28
smart00234	205	smart00234, START, in StAR and phosphatidylcholine	1e-21
smart00233	102	smart00233, PH, Pleckstrin homology domain	1e-07
pfam01852	205	pfam01852, START, START domain	1e-06
pfam00169	101	pfam00169, PH, PH domain	6e-06
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	1e-05
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	9e-05

>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2); Provisional

 Score =  690 bits (1782), Expect = 0.0
 Identities = 287/308 (93%), Positives = 297/308 (96%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           +SKVVYEGWMVRYGRRKIGRS+IHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV
Sbjct: 1   ASKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 60

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNG 121
           EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE VIDQHQ+SQV NG
Sbjct: 61  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNG 120

Query: 122 NKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNLMRRTTIGNGPPDLVHDWTRE 181
           NKY SFEYKSGMDNGR  SSSDHESQFSAQEDE+D H +L+RRTTIGNGPPD V DWT+E
Sbjct: 121 NKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDLLRRTTIGNGPPDSVLDWTKE 180

Query: 182 LDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE 241
            DS+LSNQN NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA+CE
Sbjct: 181 FDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE 240

Query: 242 EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYW 301
           EIFELVMSMDGTR+EWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYW
Sbjct: 241 EIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYW 300

Query: 302 RRNDDGSY 309
           RRNDDGSY
Sbjct: 301 RRNDDGSY 308

Length = 719

>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

 Score =  107 bits (268), Expect = 7e-28
 Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 9/117 (7%)

Query: 193 NQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDG 252
                 + W+L++ ++G++I+ +  E   L       +KA GV+ AS E++FEL+M +D 
Sbjct: 9   ELLEEPEGWKLVKEKDGVKIYTKPYEDSGLK-----LLKAEGVIPASPEQVFELLMDID- 62

Query: 253 TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309
            R +WD +F+   ++EE+D HT I+Y++ +    P  V PRD  Y+R  R+ DDG+Y
Sbjct: 63  LRKKWDKNFEEFEVIEEIDEHTDIIYYKTKP---PWPVSPRDFVYLRRRRKLDDGTY 116

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells. Length = 193

>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 213 FEELLEVDYLP---RSCSRAMKAVGVVEASCEEIFELVMSMDGT-RYEWDCSFQYGSLVE 268
            E   EV  +    R    A + VGVV   C ++ E +M  D   R EWD +      +E
Sbjct: 26  NENGDEVRSIFSPGRKPGEAFRLVGVVPMVCADLVEELM-DDLEYRPEWDKNVAKAETLE 84

Query: 269 EVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYG-SMRTVVHNQDM 321
            +D  T I YH +        V PRD  +VRYWR ++DGSY     +V H    
Sbjct: 85  VIDNGTVI-YHYVSKFAA-GPVSPRDFVFVRYWREDEDGSYAVVDVSVTHPTSP 136

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein. Length = 205

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 5   VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ-VPIKTLLIDGNCRVED 63
           V+ EGW+ +             RYFVL +  L YYK K       P  ++ + G C V +
Sbjct: 1   VIKEGWLYKKSGGGKKS--WKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSG-CTVRE 57

Query: 64  RGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111
                      +   +     K   + + A + +E   W E +   I 
Sbjct: 58  APDPDSSKKP-HCFEIKTSDRK--TLLLQAESEEEREKWVEALRKAIA 102

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|216740 pfam01852, START, START domain

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 222 LPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRL 281
                  A +A GVV      + E ++     R +WD   +    +E +    A+ Y+  
Sbjct: 37  FEPDHGEASRASGVVPMVLALLVEELLDDMEYRAQWDKDVRSAETLEVISSGGALQYYVA 96

Query: 282 QLDWFPMFVWPRDLCYVRYWRRNDDGSY 309
           +L   P  + PRD  ++RYWR+  DG Y
Sbjct: 97  ELQA-PTPLSPRDFVFLRYWRQLGDGVY 123

Length = 205

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 5   VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR 64
           V+ EGW+++ G           RYFVL   +L YYK   + +  P  ++ + G C+V   
Sbjct: 1   VIKEGWLLKKGSGGRKS--WKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSG-CQVTKV 57

Query: 65  GLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110
                         +     +     + A + +E   W + I   I
Sbjct: 58  PDSEDGKR-KNCFEIRTGDRE--TFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
            +V+ +GW+++ G  K G      R+FVL    L YY K  + N + + +L+++  C V 
Sbjct: 11  QEVIEKGWLLKEGG-KGGNLTKKKRWFVLTPNSLDYY-KSSERNALKLGSLVLNSLCSVV 68

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111
               K +     +  +V+ +K  Y+  T      +EA  W   I+ VID
Sbjct: 69  PPDEKVYKETGYWTFTVHGRKHSYYLYT--KLQ-EEANRWVNAIQEVID 114

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 7   YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGL 66
            EGW+ + G + +       R+FVL   +L YYK K   ++ P   + +     VE    
Sbjct: 1   KEGWLKKRGGKGLKSW--KKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSS 58

Query: 67  KTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEK 105
                       +    ++     + A + +E   W E 
Sbjct: 59  SGKP----NCFELVT-PDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	100.0
cd08904	204	START_STARD6-like Lipid-binding START domain of ma	99.86
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	99.83
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	99.83
cd08872	235	START_STARD11-like Ceramide-binding START domain o	99.82
cd08909	205	START_STARD13-like C-terminal lipid-binding START	99.81
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	99.81
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	99.77
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	99.76
cd08871	222	START_STARD10-like Lipid-binding START domain of m	99.76
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	99.74
cd08906	209	START_STARD3-like Cholesterol-binding START domain	99.74
cd00177	193	START Lipid-binding START domain of mammalian STAR	99.74
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	99.73
cd08914	236	START_STARD15-like Lipid-binding START domain of m	99.73
smart00234	206	START in StAR and phosphatidylcholine transfer pro	99.72
PF01852	206	START: START domain; InterPro: IPR002913 START (St	99.7
cd08913	240	START_STARD14-like Lipid-binding START domain of m	99.67
cd08874	205	START_STARD9-like C-terminal START domain of mamma	99.66
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	99.64
cd08905	209	START_STARD1-like Cholesterol-binding START domain	99.63
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	99.63
cd08908	204	START_STARD12-like C-terminal lipid-binding START	99.58
cd08907	205	START_STARD8-like C-terminal lipid-binding START d	99.57
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.57
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.54
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.51
cd08902	202	START_STARD4-like Lipid-binding START domain of ma	99.51
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.45
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.4
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.39
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.39
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.37
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.36
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.36
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.35
KOG2761	219	consensus START domain-containing proteins involve	99.35
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	99.34
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.34
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.32
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.27
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.24
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.24
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.23
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.1
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.07
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.04
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.0
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	98.97
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	98.97
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	98.97
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	98.89
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.89
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	98.88
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	98.87
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	98.83
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	98.8
PF15409	89	PH_8: Pleckstrin homology domain	98.7
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	98.4
cd08875	229	START_ArGLABRA2_like C-terminal lipid-binding STAR	98.23
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	97.85
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.71
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	97.56
KOG0690	516	consensus Serine/threonine protein kinase [Signal	97.53
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	97.45
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	97.44
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	97.26
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	97.24
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	97.17
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	97.11
PF15408	104	PH_7: Pleckstrin homology domain	97.06
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	96.49
PLN02866	1068	phospholipase D	96.49
PTZ00267	478	NIMA-related protein kinase; Provisional	96.46
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	96.22
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	96.11
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	96.09
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	95.9
cd08864	208	SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-	95.83
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	95.77
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	95.48
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	94.32
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	94.32
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	93.7
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	92.26
KOG3751	622	consensus Growth factor receptor-bound proteins (G	91.99
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	91.04
PTZ00283	496	serine/threonine protein kinase; Provisional	90.84
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	89.93
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	89.29
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	88.56
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	88.07
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	86.63
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	86.11
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	85.95
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	85.83

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=100.00  E-value=9.9e-101  Score=792.93  Aligned_cols=323  Identities=89%  Similarity=1.421  Sum_probs=314.1

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      ++.+.||||||++|+||||++|||+|||||+||+|+|||++|.++++|||+|+||+||||||+|||+|||++||||+|||
T Consensus         1 ~~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn   80 (719)
T PLN00188          1 ASKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   80 (719)
T ss_pred             CCcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhhhccCCCccccccccccCCCCCCCCCCccccccccccccccccccc
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNL  161 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~~~~s~~~~~~~~~~~~~s~s~~~s~~~~~~~~~~~~~~l  161 (335)
                      +++|++|+||||.|+|||++||+||++||+|+++.....+++|++++++..+.+|++.++++++++++++...++.++.+
T Consensus        81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  160 (719)
T PLN00188         81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL  160 (719)
T ss_pred             CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence            99999999999999999999999999999999999888888999999999899999999999999988888888889999


Q ss_pred             eeeeeecCCCCCCcccCcccccCccccCCCCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHH
Q 019858          162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE  241 (335)
Q Consensus       162 ~rr~tig~gp~~~~~dwt~~~~~~~~n~~~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe  241 (335)
                      .||+|||||||.++.|||...+.+.+|+++++||++.++|+||+|+||||||+|+.+++|++++++++|||||||+||||
T Consensus       161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE  240 (719)
T PLN00188        161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE  240 (719)
T ss_pred             ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCCHH
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhh
Q 019858          242 EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDM  321 (335)
Q Consensus       242 ~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~  321 (335)
                      +||++||+++.+|+|||+++++++|||+||+||||+|++++|.|+|++++|||||++|||+|++||+|+|+++||+||+|
T Consensus       241 ~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c  320 (719)
T PLN00188        241 EIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC  320 (719)
T ss_pred             HHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 019858          322 YEL  324 (335)
Q Consensus       322 ~~~  324 (335)
                      |-.
T Consensus       321 PP~  323 (719)
T PLN00188        321 GPQ  323 (719)
T ss_pred             CCC
Confidence            743

>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins

Probab=99.86  E-value=3.7e-21  Score=176.05  Aligned_cols=119  Identities=15%  Similarity=0.226  Sum_probs=106.3

Q ss_pred             cCCcEEEEeecCeEEEEEec-ccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          198 RKHWRLLQCQNGLRIFEELL-EVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~-~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      .+.|++....+|+.|+.... +      ..+.++|+.|+|+++|++||+++.++. .|.+||.++.+.++||+||+||+|
T Consensus        21 ~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~I   93 (204)
T cd08904          21 TSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTFI   93 (204)
T ss_pred             ccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcEE
Confidence            37899999999999999864 3      235799999999999999999988754 799999999999999999999999


Q ss_pred             EEEEEeeCccc-CcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          277 LYHRLQLDWFP-MFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       277 vy~~~~p~wlp-~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      +|.+.++  +| ..++|||||.+|+|+|.++|+|+|+..||+||+||...
T Consensus        94 ~~~~~~~--~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~  141 (204)
T cd08904          94 CHTITQS--FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSS  141 (204)
T ss_pred             EEEeccc--ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCC
Confidence            9999987  33 34999999999999998889999999999999998764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=99.83  E-value=3.9e-20  Score=166.52  Aligned_cols=123  Identities=17%  Similarity=0.316  Sum_probs=106.7

Q ss_pred             ccccCCcEEEEeec-CeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhh-ccCCCcccccceeeeeeEEEEEeC
Q 019858          195 AFSRKHWRLLQCQN-GLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDG  272 (335)
Q Consensus       195 v~~~~~W~l~~~~n-Glrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm-~~d~~R~eWD~~~~~~~vVE~iD~  272 (335)
                      ++....|++..-++ |+.||....+.      .+.++|++|+|++||++||+.|+ +++ .|.+||..+.++++||++|+
T Consensus        20 ~~~~~~W~l~~~~~~~i~i~~r~~~~------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d~   92 (208)
T cd08868          20 ILTDPGWKLEKNTTWGDVVYSRNVPG------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVIDD   92 (208)
T ss_pred             HhcCCCceEEEecCCCCEEEEEEcCC------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEecC
Confidence            34455899999987 99999997652      33689999999999999998665 666 69999999999999999999


Q ss_pred             cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |++|+|...+|. +|+.+++||||++|+|++.+ |+|+|+..|++||+++.+-.
T Consensus        93 ~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g  144 (208)
T cd08868          93 NTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKN  144 (208)
T ss_pred             CcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCC
Confidence            999999999876 45679999999999999875 78999999999999986643

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=99.83  E-value=3e-20  Score=168.85  Aligned_cols=121  Identities=19%  Similarity=0.244  Sum_probs=104.8

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCC-CcccccceeeeeeEEEEEeCcccE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~-~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      +..|++..-.||+.||......     ..+..+|++|+|++||++||++|++.+. .|.+||..+.+++|||+||+++.|
T Consensus        21 ~~~W~~~~~~~~i~v~~~~~~~-----~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i   95 (208)
T cd08903          21 ESGWKTCRRTNEVAVSWRPSAE-----FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSV   95 (208)
T ss_pred             ccCCEEEEcCCCEEEEeeecCC-----CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEE
Confidence            5789999999999999885420     1124699999999999999999998754 789999999999999999999999


Q ss_pred             EEEEEeeCccc-CcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          277 LYHRLQLDWFP-MFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       277 vy~~~~p~wlp-~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      +|.  +.+|.| ..+++||||.+|+|++.+||+|+|.+.|+.||+|+.+.
T Consensus        96 ~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~  143 (208)
T cd08903          96 CRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQA  143 (208)
T ss_pred             EEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCC
Confidence            877  666753 34999999999999999999999999999999988664

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=99.82  E-value=7.3e-20  Score=170.24  Aligned_cols=119  Identities=18%  Similarity=0.285  Sum_probs=105.8

Q ss_pred             CCcEEEEeecCeEEEEEecccCCCCccCcc--ceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSR--AMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~--~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ..|+++.++||++||....+..     ...  .+||+++|. +|+++++++++|++ .|.+||..+...+|||++|+|++
T Consensus        26 ~~W~l~~~~~gikVy~r~~~~s-----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~~   99 (235)
T cd08872          26 DGWQLFAEEGEMKVYRREVEED-----GVVLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDTL   99 (235)
T ss_pred             CCCEEEEeCCceEEEEEECCCC-----CceeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCCE
Confidence            3799999999999999876632     112  599999999 89999999999998 69999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCC-------CcEEEEEeeeechhhhhhcc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-------GSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~D-------GsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |+|..++.+|   -+++||+|+.|+|++.+|       |+|+||.+|++||.+|.+-.
T Consensus       100 I~Y~~~k~Pw---Pvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g  154 (235)
T cd08872         100 IFHQTHKRVW---PAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNK  154 (235)
T ss_pred             EEEEEccCCC---CCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCC
Confidence            9999999655   389999999999999887       67999999999999987743

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.81  E-value=1e-19  Score=167.11  Aligned_cols=91  Identities=26%  Similarity=0.335  Sum_probs=83.9

Q ss_pred             cceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEec-CC
Q 019858          228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DD  306 (335)
Q Consensus       228 ~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~-~D  306 (335)
                      .++|++..|+++|++|...|+.   .|.+||..+.++++||++|+||||+|+++++.+ |  +++||||++|+|+++ +|
T Consensus        52 k~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~-P--~~~RD~v~~R~w~~~~~~  125 (205)
T cd08909          52 RLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMA-P--HPSRDFVVLRSWRTDLPK  125 (205)
T ss_pred             EEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCC-C--CCCCEEEEEEEEEEeCCC
Confidence            4899999999999999998875   599999999999999999999999999999744 3  699999999999988 59


Q ss_pred             CcEEEEEeeeechhhhhh
Q 019858          307 GSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       307 GsYvIl~~Sv~H~~~~~~  324 (335)
                      |+|+|+++||+|++++..
T Consensus       126 G~~vi~~~Sv~H~~~p~~  143 (205)
T cd08909         126 GACSLVSVSVEHEEAPLL  143 (205)
T ss_pred             CcEEEEEecCCCCcCCCC
Confidence            999999999999998764

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=99.81  E-value=2.9e-19  Score=160.64  Aligned_cols=121  Identities=17%  Similarity=0.276  Sum_probs=103.4

Q ss_pred             CCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhcc-CCCcccccceeeeeeEEEEEeCcccEE
Q 019858          199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSM-DGTRYEWDCSFQYGSLVEEVDGHTAIL  277 (335)
Q Consensus       199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~-d~~R~eWD~~~~~~~vVE~iD~HtdIv  277 (335)
                      ..|++..-.+|+.||.....     ...++++|++|.|+++|++||+.|++. ...|.+||..+.+.++||+||++++|+
T Consensus        22 ~~W~~~~~~~~i~v~~~~~~-----~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~   96 (206)
T cd08867          22 DGWKVLKTVKNITVSWKPST-----EFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVG   96 (206)
T ss_pred             CCcEEEEcCCCcEEEEecCC-----CCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEE
Confidence            68999999999999997321     112368999999999999999999993 237999999999999999999999999


Q ss_pred             EEEEeeCcc-cCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          278 YHRLQLDWF-PMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       278 y~~~~p~wl-p~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |..  .+|. .+.+++||||++|+|+|.+||+|+|+..||+||+++.+-.
T Consensus        97 ~~~--~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~  144 (206)
T cd08867          97 RTI--TPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPG  144 (206)
T ss_pred             EEE--ccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCC
Confidence            984  3343 2359999999999999999999999999999998876543

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.77  E-value=2.4e-18  Score=155.07  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=102.2

Q ss_pred             ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ....|++..-+||++||....+.    .....++|++++|+|+|++|++.||+   .|.+||..+.++++||++|+|++|
T Consensus        17 ~~~~W~~~~~~~gi~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i   89 (197)
T cd08869          17 KSKGWVSVSSSDHVELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEV   89 (197)
T ss_pred             ccCCceEEecCCcEEEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEE
Confidence            36889999999999999987641    12346899999999999999999985   489999999999999999999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEe-cCCCcEEEEEeeeech-hhhh
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRR-NDDGSYGSMRTVVHNQ-DMYE  323 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR-~~DGsYvIl~~Sv~H~-~~~~  323 (335)
                      +|+.+.++| |  +++||||++|+|++ .++|+|+|++.||.|| .++.
T Consensus        90 ~y~~~~~p~-p--v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~  135 (197)
T cd08869          90 YQYVTNSMA-P--HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL  135 (197)
T ss_pred             EEEEeeCCC-C--CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC
Confidence            999999876 3  69999999999996 5788999999999995 5544

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=99.76  E-value=5.1e-18  Score=153.96  Aligned_cols=123  Identities=16%  Similarity=0.273  Sum_probs=105.7

Q ss_pred             ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeC-cc
Q 019858          197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG-HT  274 (335)
Q Consensus       197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~-Ht  274 (335)
                      +...|+++.-++|+.||....+.     +....+|+++++ ++|+++++++++|++ .|.+||..+.+.++||++++ ++
T Consensus        19 ~~~~W~l~~~~~~i~Vy~r~~~~-----s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~~   92 (207)
T cd08911          19 EPDGWEPFIEKKDMLVWRREHPG-----TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETGS   92 (207)
T ss_pred             cCCCcEEEEEcCceEEEEeccCC-----CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCCC
Confidence            56679999999999999987652     334589998877 999999999999998 69999999999999999755 99


Q ss_pred             cEEEEEEeeCcccCcccCceeEEEEeeEecCC-CcEEEEEeeeechhhhhhcccc
Q 019858          275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-GSYGSMRTVVHNQDMYELTWRV  328 (335)
Q Consensus       275 dIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~D-GsYvIl~~Sv~H~~~~~~t~~~  328 (335)
                      +|+|..+++   ||-+++||+|+.|.|+++++ |.|+|+.+||.||.++..-..|
T Consensus        93 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~V  144 (207)
T cd08911          93 EIIYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKV  144 (207)
T ss_pred             EEEEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCE
Confidence            999999995   55589999999999888854 6789999999999998765433

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=99.76  E-value=5.8e-18  Score=153.87  Aligned_cols=118  Identities=16%  Similarity=0.296  Sum_probs=104.4

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ...|++...++|++||....+.     +...++|+.+++ ++||++||+.|++++ .|.+||..+..+++||++|++++|
T Consensus        22 ~~~W~~~~~~~gi~iy~r~~~~-----~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~~~i   95 (222)
T cd08871          22 TDGWKLKYNKNNVKVWTKNPEN-----SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPNNDI   95 (222)
T ss_pred             CCCcEEEEcCCCeEEEEeeCCC-----CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCCCEE
Confidence            3479999999999999986551     334689999987 789999999999987 699999999999999999999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      +|..++.+|   .+++||||+.|.|++.+ |+|+|+..|+.|++++.+-
T Consensus        96 ~y~~~~~P~---pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~  140 (222)
T cd08871          96 GYYSAKCPK---PLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRK  140 (222)
T ss_pred             EEEEeECCC---CCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCC
Confidence            999999655   49999999999999876 9999999999999998653

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=99.74  E-value=1e-17  Score=151.65  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             CCcEEEEeecC----eEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeC-
Q 019858          199 KHWRLLQCQNG----LRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG-  272 (335)
Q Consensus       199 ~~W~l~~~~nG----lrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~-  272 (335)
                      ..|+++.-++|    ++||....+.     +....+|+++++ ++||++++++++|++ .|.+||..+.+.++||+.+. 
T Consensus        22 ~~W~~~~~k~~~~~~i~vy~r~~~~-----s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~~   95 (209)
T cd08870          22 QAWQQVMDKSTPDMSYQAWRRKPKG-----TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEKS   95 (209)
T ss_pred             CcceEhhhccCCCceEEEEecccCC-----CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCCC
Confidence            57999999999    9999987652     234589999999 569999999999998 59999999999999999655 


Q ss_pred             cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858          273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      +++|+|+.++.+|   -+++||+|+.|.|+...+|+|+|+.+|+.||.+++.
T Consensus        96 ~~~i~y~~~~~P~---P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~  144 (209)
T cd08870          96 GTEIVRWVKKFPF---PLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS  144 (209)
T ss_pred             CcEEEEEEEECCC---cCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC
Confidence            7999999999544   589999999999999889999999999999999985

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=99.74  E-value=1.5e-17  Score=151.89  Aligned_cols=120  Identities=18%  Similarity=0.293  Sum_probs=105.0

Q ss_pred             cCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHH-HHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          198 RKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       198 ~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IF-e~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ...|++..- +||++||....+      +.+.++|+.++|++||++|| ++|.+++ .|.+||..+.+.++||++|++++
T Consensus        24 ~~~W~l~~~~~~gi~V~s~~~~------~~~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~~~~~   96 (209)
T cd08906          24 EENWKFEKNNDNGDTVYTLEVP------FHGKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVDDNTL   96 (209)
T ss_pred             ccCCEEEEecCCCCEEEEeccC------CCCcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeeccCCcE
Confidence            568999865 599999985443      22378999999999999998 6889988 59999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |+| .+..+|+++.+++||||++|+|.+..|| |+++..|+.|+.++..-.
T Consensus        97 i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~  145 (209)
T cd08906          97 VSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSK  145 (209)
T ss_pred             EEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCC
Confidence            999 8888888778999999999999999888 888889999998886543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=99.74  E-value=3.6e-17  Score=140.03  Aligned_cols=117  Identities=36%  Similarity=0.648  Sum_probs=106.5

Q ss_pred             CCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEE
Q 019858          199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY  278 (335)
Q Consensus       199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy  278 (335)
                      ..|++....+|++||....+.     +..+++|+++.|++|+++|++++++++ .|.+||..+.++.++|++++++.|+|
T Consensus        15 ~~W~~~~~~~~v~vy~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~   88 (193)
T cd00177          15 EGWKLVKEKDGVKIYTKPYED-----SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDIIY   88 (193)
T ss_pred             CCeEEEEECCcEEEEEecCCC-----CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEEE
Confidence            479999999999999987652     345799999999999999999999987 59999999999999999999999999


Q ss_pred             EEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858          279 HRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       279 ~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      ..+++.|.   +++||||+.++|.+.+||+|+|+++|+.|+.++.+
T Consensus        89 ~~~~~p~p---~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~  131 (193)
T cd00177          89 YKTKPPWP---VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKE  131 (193)
T ss_pred             EEeeCCCc---cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCC
Confidence            99997663   89999999999999999999999999999876654

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=99.73  E-value=3.1e-17  Score=153.56  Aligned_cols=147  Identities=16%  Similarity=0.149  Sum_probs=118.2

Q ss_pred             CCCCCCcccCcccccCccccCC--CCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHH
Q 019858          169 NGPPDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFEL  246 (335)
Q Consensus       169 ~gp~~~~~dwt~~~~~~~~n~~--~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~  246 (335)
                      +.-..++..|+..++.-+++.|  +=....+.+.|++..-+||++||....       +....+|++++|++|+++||++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~-------s~~l~fk~e~~vd~s~~~v~dl   95 (235)
T cd08873          23 QREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ-------DGVLSFCVELKVQTCASDAFDL   95 (235)
T ss_pred             CccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC-------CCceEEEEEEEecCCHHHHHHH
Confidence            3345677888876655443322  223455689999999999999999852       2235789999999999999999


Q ss_pred             hhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecC-C-CcEEEEEeeeechhhhhh
Q 019858          247 VMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-D-GSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       247 lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-D-GsYvIl~~Sv~H~~~~~~  324 (335)
                      |.|++ .|.+||..+...++||++|+..-|+|.+..++| |  ++|||||++++|++.. + |+|+|+++||.|+.+|..
T Consensus        96 L~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p~Pw-P--vk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~  171 (235)
T cd08873          96 LSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLT-S--EKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQT  171 (235)
T ss_pred             HhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCC-C--CCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCC
Confidence            99998 599999999999999999988877888877666 4  9999999999999943 3 359999999999998865


Q ss_pred             cc
Q 019858          325 TW  326 (335)
Q Consensus       325 t~  326 (335)
                      -.
T Consensus       172 kg  173 (235)
T cd08873         172 PG  173 (235)
T ss_pred             CC
Confidence            43

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=99.73  E-value=2.2e-17  Score=154.75  Aligned_cols=143  Identities=17%  Similarity=0.199  Sum_probs=118.2

Q ss_pred             CCCcccCcccccCccccCC--CCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhc
Q 019858          172 PDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMS  249 (335)
Q Consensus       172 ~~~~~dwt~~~~~~~~n~~--~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~  249 (335)
                      ..++..|+..++.-+++.|  +-....+...|++..-+||++||... +      +.-..+|++.++++|++++|++|.|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~------s~~l~fk~e~~vdvs~~~l~~LL~D   99 (236)
T cd08914          27 VPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E------HDVLSVWVEKHVKRPAHLAYRLLSD   99 (236)
T ss_pred             CceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C------CCcEEEEEEEEEcCCHHHHHHHHhC
Confidence            4466778776554443322  22345568999999999999999983 2      2235899999999999999999999


Q ss_pred             cCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecC-CCc-EEEEEeeeechhhhhhc
Q 019858          250 MDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGS-YGSMRTVVHNQDMYELT  325 (335)
Q Consensus       250 ~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-DGs-YvIl~~Sv~H~~~~~~t  325 (335)
                      ++ .|.+||..+.+.+|||++|+..+ ||....|+|.|  +++||+|+++.|++.. ||. |+|..+||.||..|..-
T Consensus       100 ~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~P--vk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k  173 (236)
T cd08914         100 FT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNN--DKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP  173 (236)
T ss_pred             hh-hhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCC--CCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence            98 59999999999999999999999 88888887755  6999999999999887 997 99999999998887654

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=99.72  E-value=6.7e-17  Score=142.84  Aligned_cols=120  Identities=32%  Similarity=0.427  Sum_probs=103.0

Q ss_pred             cCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHH-HhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          198 RKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFE-LVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       198 ~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe-~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ...|++..- +||..+|....+.    .+.+.++|++|+|+++|+++|. ++++++ .|.+||..+..+++||++|++++
T Consensus        18 ~~~W~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~~~~   92 (206)
T smart00234       18 EPGWVLSSENENGDEVRSILSPG----RSPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDNGTV   92 (206)
T ss_pred             CCccEEccccCCcceEEEEccCC----CCceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECCCCe
Confidence            456999885 8999999876542    1346799999999999998665 555655 69999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      |+|...++.|  ..+++||||+.|+|+..+||+|+|+..|+.|+.++.+
T Consensus        93 i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~  139 (206)
T smart00234       93 IYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPT  139 (206)
T ss_pred             EEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCC
Confidence            9999999766  2589999999999999899999999999999998864

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=99.70  E-value=3.6e-16  Score=137.67  Aligned_cols=122  Identities=26%  Similarity=0.477  Sum_probs=100.8

Q ss_pred             cccCCcEEEEe-ecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcc
Q 019858          196 FSRKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT  274 (335)
Q Consensus       196 ~~~~~W~l~~~-~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Ht  274 (335)
                      .....|++..- .++...+....+.+   ....+.+|++++|+++++++|+.+|+..  . +||..+....+||++|+++
T Consensus        16 ~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~~   89 (206)
T PF01852_consen   16 EDEDGWKLYKDKKNGDVYYKKVSPSD---SCPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDEDT   89 (206)
T ss_dssp             HTCTTCEEEEEETTTCEEEEEEECSS---STSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETTE
T ss_pred             cCCCCCeEeEccCCCeEEEEEeCccc---cccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCCC
Confidence            34678999994 44444444444321   0245799999999999999999999764  2 9999999999999999999


Q ss_pred             cEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhh
Q 019858          275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       275 dIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      +|+|...++.|. ..+++||||+.|+|++.+||+|+|++.||+||.++..
T Consensus        90 ~i~~~~~~~~~~-~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~  138 (206)
T PF01852_consen   90 DIVYFVMKSPWP-GPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN  138 (206)
T ss_dssp             EEEEEEEE-CTT-TTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT
T ss_pred             eEEEEEecccCC-CCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc
Confidence            999999998774 2478899999999999999999999999999999884

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=99.67  E-value=4.5e-16  Score=145.95  Aligned_cols=144  Identities=22%  Similarity=0.293  Sum_probs=114.6

Q ss_pred             CCCcccCcccccCccccCCC--CccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhc
Q 019858          172 PDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMS  249 (335)
Q Consensus       172 ~~~~~dwt~~~~~~~~n~~~--~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~  249 (335)
                      ..++..|+..++.-+++.|.  -.-..+.+.|++..-+||++||.. .+      +....+|+.++|++|+++|+++|.|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~-~~------s~~~~fK~e~~vd~s~e~v~~lL~D  102 (240)
T cd08913          30 VPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTL-EE------DKFLSFKVEMVVHVDAAQAFLLLSD  102 (240)
T ss_pred             CceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEE-eC------CCccEEEEEEEEcCCHHHHHHHHhC
Confidence            45677787765554433221  122345778999999999999993 22      3346889999999999999999999


Q ss_pred             cCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEec-CCC-cEEEEEeeeechhhhhhc
Q 019858          250 MDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG-SYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       250 ~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DG-sYvIl~~Sv~H~~~~~~t  325 (335)
                      ++ .|.+||..+...+|||++|+.. .+|...-|.|. +-+++||||++++|++. ++| .|+|+.+|+.||++|..-
T Consensus       103 ~~-~r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~~-~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k  177 (240)
T cd08913         103 LR-RRPEWDKHYRSCELVQQVDEDD-AIYHVTSPSLS-GHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP  177 (240)
T ss_pred             hh-hhhhhHhhccEEEEEEecCCCc-EEEEEecCCCC-CCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence            98 5999999999999999999974 67888888774 45999999999999885 444 699999999999976543

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=99.66  E-value=6e-16  Score=141.78  Aligned_cols=121  Identities=14%  Similarity=0.252  Sum_probs=105.3

Q ss_pred             cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      -+...|++-.-++|++||....+      +....++++++|++||++|+++|.|++ .|.+||..+.+.+|+|++|+.+.
T Consensus        19 ~~~~gW~l~~~~~gI~Vy~k~~~------~~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~vl~~~~~d~~   91 (205)
T cd08874          19 QATAGWSYQCLEKDVVIYYKVFN------GTYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARIHKTFTEDIC   91 (205)
T ss_pred             hccCCcEEEecCCCEEEEEecCC------CCcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheeeeeecCCCeE
Confidence            45789999999999999998644      234578999999999999999999998 59999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      |+|.+....| |..+++||||+++.|+.++| +|+|..+||.||.+|...
T Consensus        92 i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~  139 (205)
T cd08874          92 LVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPG  139 (205)
T ss_pred             EEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCC
Confidence            9999999666 44579999999999988655 555888999999988654

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.64  E-value=1.9e-15  Score=133.04  Aligned_cols=118  Identities=21%  Similarity=0.371  Sum_probs=102.6

Q ss_pred             ccccccCC-cEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEe
Q 019858          193 NQAFSRKH-WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD  271 (335)
Q Consensus       193 ~dv~~~~~-W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD  271 (335)
                      +.++++.. |+++.+++|++||....+.     +....+++.++|++||++|++++++++ .|.+||..+..++|+|+++
T Consensus        10 ~~~~~~~~~W~~~~~~~~v~v~~~~~~~-----~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~   83 (195)
T cd08876          10 GAALAPDGDWQLVKDKDGIKVYTRDVEG-----SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTD   83 (195)
T ss_pred             ccccCCCCCCEEEecCCCeEEEEEECCC-----CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCC
Confidence            34555555 9999999999999987652     223689999999999999999999998 4889999999999999999


Q ss_pred             CcccEEEEEEeeCcccCcccCceeEEEEeeEecC-CCcEEEEEeeeech
Q 019858          272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGSYGSMRTVVHNQ  319 (335)
Q Consensus       272 ~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~-DGsYvIl~~Sv~H~  319 (335)
                      ++.+|+|..+.+.|   .+++||||+.+.|+... ||.|+|.+.|+.|+
T Consensus        84 ~~~~i~~~~~~~p~---pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~  129 (195)
T cd08876          84 DNERSVYTVIDLPW---PVKDRDMVLRSTTEQDADDGSVTITLEAAPEA  129 (195)
T ss_pred             CCcEEEEEEEeccc---ccCCceEEEEEEEEEcCCCCEEEEEeecCCcc
Confidence            99999999999654   38999999998888775 89999999999996

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=99.63  E-value=1.2e-15  Score=138.79  Aligned_cols=120  Identities=17%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             cCCcEEEE-eecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhh-ccCCCcccccceeeeeeEEEEEeCccc
Q 019858          198 RKHWRLLQ-CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       198 ~~~W~l~~-~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm-~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ...|++.. -+||+.||....+.      .+.++|+.|+|++|+++|++.|+ +++ .+.+||..+.+.++||++|++++
T Consensus        24 ~~~W~~~~~~~~gi~v~s~~~~~------~~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~~~   96 (209)
T cd08905          24 QEGWKTEIVAENGDKVLSKVVPD------IGKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKDTL   96 (209)
T ss_pred             ccCCEEEEecCCCCEEEEEEcCC------CCcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCCce
Confidence            45799994 58999999865542      23799999999999999995555 666 58999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |+|. ....|..+.+++||||.+|+|++. +++|+++..|+.|+.++.+-.
T Consensus        97 i~y~-~~~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~  145 (209)
T cd08905          97 ITHE-VAAETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKG  145 (209)
T ss_pred             EEEE-EeccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCC
Confidence            9998 656664355999999999999998 567788889999999986643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=99.63  E-value=1.1e-15  Score=139.19  Aligned_cols=118  Identities=23%  Similarity=0.334  Sum_probs=99.2

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ...|+++.-++|+.||....+     .+....+|++++++ +||++++++++|++ .|.+||..+..  ++|.++++++|
T Consensus        24 ~~~W~l~~~~~~i~Vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~~i   95 (207)
T cd08910          24 GAAWELLVESSGISIYRLLDE-----QSGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGETV   95 (207)
T ss_pred             CCCeEEEEecCCeEEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCCEE
Confidence            356999999999999997654     23346899999999 69999999999998 69999999886  78989999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEec-CCC--cEEEEEeeeechhhhhhcc
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG--SYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DG--sYvIl~~Sv~H~~~~~~t~  326 (335)
                      +|+.++++|   -+++||+|+.|.|+.. .+|  .|+|+.+|+.||+++.+-.
T Consensus        96 ~y~~~k~Pw---Pvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~  145 (207)
T cd08910          96 IYWEVKYPF---PLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPG  145 (207)
T ss_pred             EEEEEEcCC---CCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCC
Confidence            999999655   4999999999988743 344  4778889999999887643

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.58  E-value=7.2e-15  Score=134.95  Aligned_cols=95  Identities=22%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             ccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEe-cC
Q 019858          227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR-ND  305 (335)
Q Consensus       227 ~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR-~~  305 (335)
                      -.++|+++.|+|+|++|...|++.   |.+||..+.+++|||++|++++|+|+++.+.|   -+++||+|++|.|+. .+
T Consensus        51 l~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~Pw---P~~~RD~V~~Rs~~~~~~  124 (204)
T cd08908          51 LRLWRTTIEVPAAPEEILKRLLKE---QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMA---PHPARDYVVLRTWRTNLP  124 (204)
T ss_pred             cEEEEEEEEeCCCHHHHHHHHHhh---HHHHHHHhhheEeeEecCCCceEEEEEccCCC---CCCCcEEEEEEEEEEeCC
Confidence            458999999999999999999755   99999999999999999999999999999765   389999999999985 68


Q ss_pred             CCcEEEEEeeeechhhhhhccc
Q 019858          306 DGSYGSMRTVVHNQDMYELTWR  327 (335)
Q Consensus       306 DGsYvIl~~Sv~H~~~~~~t~~  327 (335)
                      +|+|+|...|++|+.++...-|
T Consensus       125 ~g~~~I~~~Sv~h~~~P~~~VR  146 (204)
T cd08908         125 KGACALLATSVDHDRAPVAGVR  146 (204)
T ss_pred             CCeEEEEEeecCcccCCcCceE
Confidence            9999999999999999976434

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=99.57  E-value=8.1e-15  Score=135.06  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHH-HHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE-EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe-~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ...|......+|+.|+.+..+.    ...-.+.|++..|.++|. .++++|.+    |+.||..+.+.++||+||+++||
T Consensus        26 ~kgW~~~~~~~~vev~~kk~~d----~~~l~lwk~s~ei~~~p~~vl~rvL~d----R~~WD~~m~e~~~Ie~Ld~n~dI   97 (205)
T cd08907          26 FKGWHSAPGPDNTELACKKVGD----GHPLRLWKVSTEVEAPPSVVLQRVLRE----RHLWDEDLLHSQVIEALENNTEV   97 (205)
T ss_pred             cCCceeecCCCCcEEEEEeCCC----CCceEEEEEEEEecCCCHHHHHHHhhc----hhhhhHHHHhhhhheeecCCCEE
Confidence            4678888888999998875431    122248888888888555 45566663    99999999999999999999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEec-CCCcEEEEEeeeechhhhhh
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      .|+.++   .|.-+++||||.+|.|+-. +.|.|+|+-+||+|++++-.
T Consensus        98 ~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~  143 (205)
T cd08907          98 YHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLE  143 (205)
T ss_pred             EEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCC
Confidence            999999   5566899999999999854 67899999999999999865

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.57  E-value=1.8e-14  Score=118.17  Aligned_cols=99  Identities=20%  Similarity=0.364  Sum_probs=75.2

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCc---eEEeeCCcceecCceeEEEEEEecC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGN---CRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~---~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      +||||.+.|...+  .-+++|||||+++.|.|||. |.+. .|.+.+.|+.+   +.|.+.-.....++..|.|.|... 
T Consensus         1 KeG~L~K~g~~~~--k~wkkRwFvL~~~~L~Yyk~-~~d~-~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-   75 (103)
T cd01251           1 KEGFMEKTGPKHT--EGFKKRWFTLDDRRLMYFKD-PLDA-FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-   75 (103)
T ss_pred             CceeEEecCCCCC--CCceeEEEEEeCCEEEEECC-CCCc-CcCcEEEeeccccceeEeccCCccccccccceEEEEeC-
Confidence            5899999997532  22579999999999998875 4454 89999988754   356432111112344569999875 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        ++++.|.|.|.+|+..||+||+.||++
T Consensus        76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~  102 (103)
T cd01251          76 --ERKFLFACETEQDRREWIAAFQNVLSR  102 (103)
T ss_pred             --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence              899999999999999999999999764

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.54  E-value=6.6e-14  Score=108.11  Aligned_cols=91  Identities=26%  Similarity=0.454  Sum_probs=72.6

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY   86 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~   86 (335)
                      |||||++++...   ..+++|||||+++.|.||+.+......|.+++.|+++...++.+       .-++|+|...  ++
T Consensus         1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~~   68 (91)
T cd01246           1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDS-------DDKCFTIDTG--GD   68 (91)
T ss_pred             CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCC-------CCcEEEEEcC--CC
Confidence            799999998643   45779999999999999998764434899999997654333321       1578898753  44


Q ss_pred             ceEEEeecCHHHHHHHHHHHHHH
Q 019858           87 HRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        87 ~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      +.+.|.|.|.+|+..|+.||+.|
T Consensus        69 ~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          69 KTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC
Confidence            89999999999999999999876

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.51  E-value=1.3e-13  Score=110.00  Aligned_cols=95  Identities=19%  Similarity=0.373  Sum_probs=73.9

Q ss_pred             ceeeeEEEeeec-ccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            6 VYEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         6 ~~EGWly~~g~~-~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      |+||||++++.. .+....+++|||||+|+.|.|||.+. + ..|.+.+.|.+ |.|+.- .+.   +..|+|.|..  +
T Consensus         1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~-~-~~~~~~I~L~~-~~v~~~-~~~---~k~~~F~I~~--~   71 (96)
T cd01260           1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ-D-EKAEGLIFLSG-FTIESA-KEV---KKKYAFKVCH--P   71 (96)
T ss_pred             CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC-C-CccceEEEccC-CEEEEc-hhc---CCceEEEECC--C
Confidence            589999999743 22466788999999999999998654 3 37889999955 566642 122   2468899963  4


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      +.+.+-|+|.|.||+..||+||..|
T Consensus        72 ~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          72 VYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            4589999999999999999999876

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins

Probab=99.51  E-value=7.2e-14  Score=128.56  Aligned_cols=119  Identities=18%  Similarity=0.310  Sum_probs=103.0

Q ss_pred             cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      +.++.|++....+|+.|..+..+.     -.+.++|+-|+|+..|++|++.|-.+. .|.+||..+...++||+||..|.
T Consensus        20 ~~~~~Wkl~k~~~~~~v~~k~~~e-----f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~   93 (202)
T cd08902          20 ILEEEWRVAKKSKDVTVWRKPSEE-----FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCC   93 (202)
T ss_pred             ccccCcEEEEeCCCEEEEEecCCc-----CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcE
Confidence            357899999999999999996531     235799999999999999999997754 59999999999999999999999


Q ss_pred             EE-EEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhh
Q 019858          276 IL-YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYE  323 (335)
Q Consensus       276 Iv-y~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~  323 (335)
                      |. |.+-.+.+  ..++|||||.+|++.|.+||. +.+--|++|+.++.
T Consensus        94 I~~yvt~~~~~--~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp  139 (202)
T cd08902          94 VMRYTTAGQLL--NIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP  139 (202)
T ss_pred             EEEEEcccCCc--CccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC
Confidence            98 65555543  679999999999999999997 66689999998875

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.45  E-value=1.2e-12  Score=100.27  Aligned_cols=99  Identities=21%  Similarity=0.416  Sum_probs=79.6

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCC-CCCccEEEEecCceEEeeCCcce--ecCceeEEEEEEec
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD-NQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLSVYNK   82 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~-~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf~iyn~   82 (335)
                      .+||||++++...-++   ++|||||.++.|.|||..... ...|...+-++ +|.|.+.....  .....-++|.|...
T Consensus         2 ~~~G~L~~~~~~~~~w---k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~-~~~v~~~~~~~~~~~~~~~~~f~i~~~   77 (104)
T PF00169_consen    2 IKEGWLLKKSSSRKKW---KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLD-DCTVRPDPSSDFLSNKKRKNCFEITTP   77 (104)
T ss_dssp             EEEEEEEEEESSSSSE---EEEEEEEETTEEEEESSTTTTTESSESEEEEGT-TEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred             EEEEEEEEECCCCCCe---EEEEEEEECCEEEEEecCccccceeeeEEEEec-CceEEEcCccccccccCCCcEEEEEeC
Confidence            5899999999444444   599999999999999988742 36999999994 45777743321  23467788999987


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      ..  ..+.|.|.|.+|+..|++||+.|+
T Consensus        78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   78 NG--KSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            55  899999999999999999999995

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.40  E-value=3e-12  Score=107.51  Aligned_cols=98  Identities=19%  Similarity=0.387  Sum_probs=75.3

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC-
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE-   84 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~-   84 (335)
                      ++||||++.|...   .-+++|||||+++.|.|||. +.+. .|.+++.|+ +|.|+.-...    ..-+.|.|+...+ 
T Consensus         1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk~-~~~~-~~~g~I~L~-~~~v~~~~~~----~~~~~F~i~~~~~~   70 (125)
T cd01252           1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFEY-TTDK-EPRGIIPLE-NVSIREVEDP----SKPFCFELFSPSDK   70 (125)
T ss_pred             CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEcC-CCCC-CceEEEECC-CcEEEEcccC----CCCeeEEEECCccc
Confidence            4799999988654   34669999999999998874 4444 899999996 6667653111    2347888887654 


Q ss_pred             -----------------CcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           85 -----------------KYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        85 -----------------~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                                       ..+.+.|.|.|.+|+..|+.||+.+|.+.
T Consensus        71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~  116 (125)
T cd01252          71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN  116 (125)
T ss_pred             cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence                             23677899999999999999999997543

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.39  E-value=3.8e-12  Score=101.37  Aligned_cols=96  Identities=26%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCc---ceecCceeEEEEEEe
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGL---KTHHGHMVYVLSVYN   81 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gr---e~~hg~~~yvf~iyn   81 (335)
                      .||||.+.|...-.   +++|||||.++  .|.|||.. .+ ..|.+++-|...+.|+....   ..-|...-+.|.|..
T Consensus         1 ~~G~L~K~g~~~k~---WkkRwFvL~~~~~~L~Yy~~~-~~-~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t   75 (101)
T cd01235           1 CEGYLYKRGALLKG---WKPRWFVLDPDKHQLRYYDDF-ED-TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT   75 (101)
T ss_pred             CeEEEEEcCCCCCC---ccceEEEEECCCCEEEEecCC-CC-CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence            48999999965444   45999999954  89988755 34 48999999988888875311   112233446677743


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                         +.+.+-|.|.|.||+..|++||+.+|
T Consensus        76 ---~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          76 ---SKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             ---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence               56899999999999999999999874

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.39  E-value=2.5e-12  Score=105.99  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=78.1

Q ss_pred             eeeeEEEee--ecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee---cCceeEEEEEEe
Q 019858            7 YEGWMVRYG--RRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYN   81 (335)
Q Consensus         7 ~EGWly~~g--~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~---hg~~~yvf~iyn   81 (335)
                      .||+|++++  ..++|..-+++|||||++..|.|||.++.....|.+++-|.....|++-..+..   +.+.-|.|.|.-
T Consensus         2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t   81 (106)
T cd01238           2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH   81 (106)
T ss_pred             cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe
Confidence            589999996  444677678899999999999999987754457999999987777776433331   123458899976


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~  108 (335)
                      .   ++.+-|.|.|.+|...|++||+.
T Consensus        82 ~---~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          82 D---EGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             C---CCeEEEEcCCHHHHHHHHHHHHh
Confidence            3   57888999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.37  E-value=4.1e-12  Score=103.31  Aligned_cols=95  Identities=17%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~   83 (335)
                      +-++|||.+.|...-   -+++|||||+++.|.|||.+. + ..|++.+-|. +|.|+.. +.+...| ..++|.|..  
T Consensus         2 v~k~G~L~Kkg~~~k---~WkkRwfvL~~~~L~yyk~~~-~-~~~~~~I~L~-~~~v~~~~~~~~~~~-~~~~F~I~t--   72 (100)
T cd01233           2 VSKKGYLNFPEETNS---GWTRRFVVVRRPYLHIYRSDK-D-PVERGVINLS-TARVEHSEDQAAMVK-GPNTFAVCT--   72 (100)
T ss_pred             cceeEEEEeeCCCCC---CcEEEEEEEECCEEEEEccCC-C-ccEeeEEEec-ccEEEEccchhhhcC-CCcEEEEEC--
Confidence            458999999997653   356999999999999998754 2 4899999996 7877643 2211111 246888854  


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       .++.+.|.|.|.+|+..||+||+.+
T Consensus        73 -~~rt~~~~A~s~~e~~~Wi~ai~~~   97 (100)
T cd01233          73 -KHRGYLFQALSDKEMIDWLYALNPL   97 (100)
T ss_pred             -CCCEEEEEcCCHHHHHHHHHHhhhh
Confidence             5789999999999999999999876

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.36  E-value=5.2e-12  Score=98.05  Aligned_cols=94  Identities=17%  Similarity=0.306  Sum_probs=71.7

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY   86 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~   86 (335)
                      |||||++.+...  ...+++|||||+++.|.||+..+.....|..++.+ ..|.|+......   +.-++|.|....   
T Consensus         1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l-~~~~v~~~~~~~---~~~~~f~i~~~~---   71 (94)
T cd01250           1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDL-RRCTVRHNGKQP---DRRFCFEVISPT---   71 (94)
T ss_pred             CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccccccceEEec-cceEEecCcccc---CCceEEEEEcCC---
Confidence            699999987542  34577999999999999998877433467777777 456666532221   245799998643   


Q ss_pred             ceEEEeecCHHHHHHHHHHHHHH
Q 019858           87 HRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        87 ~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      +.+.|.|.|.+|+.+|+.||++|
T Consensus        72 ~~~~f~a~s~~~~~~Wi~al~~~   94 (94)
T cd01250          72 KTWHFQADSEEERDDWISAIQES   94 (94)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcC
Confidence            88999999999999999999864

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=99.36  E-value=1.6e-11  Score=91.73  Aligned_cols=99  Identities=19%  Similarity=0.314  Sum_probs=80.1

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      .++|||+++...  +.+-+++|||+|.++.|.+|+..+... ..|.+.+.|++. .|........ ...-++|.|..+..
T Consensus         2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~   77 (102)
T smart00233        2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR   77 (102)
T ss_pred             ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence            589999998865  566778999999999999999988764 689999999665 7766533321 23457888887644


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                        ..+.|.|.|.+|+..|+.+|+.++
T Consensus        78 --~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       78 --RSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence              799999999999999999999884

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.35  E-value=7.7e-12  Score=100.94  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY   86 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~   86 (335)
                      ++|||++.|.---|++   +|||||++..|.|||.++.....|.+++-+..++.+.+...       -..|.|..  ...
T Consensus         1 ~~G~L~K~~~~~k~Wk---~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~-------~~~F~i~~--~~~   68 (91)
T cd01247           1 TNGVLSKWTNYINGWQ---DRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEFD-------ENRFDISV--NEN   68 (91)
T ss_pred             CceEEEEeccccCCCc---eEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCCCC-------CCEEEEEe--CCC
Confidence            5899999996555555   99999999999999988754456899999965544443211       24677753  235


Q ss_pred             ceEEEeecCHHHHHHHHHHHHH
Q 019858           87 HRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        87 ~~~~laa~s~eea~~W~~a~~~  108 (335)
                      +.+.|.|.|.+|...|++||+.
T Consensus        69 r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          69 VVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             eEEEEEeCCHHHHHHHHHHHhh
Confidence            9999999999999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]

Probab=99.35  E-value=2.7e-12  Score=119.29  Aligned_cols=123  Identities=21%  Similarity=0.287  Sum_probs=107.4

Q ss_pred             ccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEe-C
Q 019858          195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-G  272 (335)
Q Consensus       195 v~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD-~  272 (335)
                      .-+...|.++--+++..|+.-..+     .+-....|+.|+.+ +||+.+++..||.+ +|.+||..+.+.++||+.- -
T Consensus        25 ~~~~~~We~~~~k~~~~i~~q~~~-----~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~t   98 (219)
T KOG2761|consen   25 CDAGQGWELVMDKSTPSIWRQRRP-----KTGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPVT   98 (219)
T ss_pred             cCcccchhhhcccCCceEEEEccc-----CCCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCCC
Confidence            456678999999999999985433     11144899999885 59999999999998 7999999999999999984 7


Q ss_pred             cccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       273 HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      .++|||+..+   +|+.|++||+|+.|.|+-.++-.|+|+-.||.|+.++++-+
T Consensus        99 g~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~  149 (219)
T KOG2761|consen   99 GTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKK  149 (219)
T ss_pred             CceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCC
Confidence            9999999999   89999999999999999888888888889999999998873

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=99.34  E-value=3.4e-12  Score=115.67  Aligned_cols=113  Identities=12%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL  277 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIv  277 (335)
                      ...|++..-.+|++||....+.     +....+|+.|+|+++++.+.++|.+++ .+.+|+....++++++++|..+.|+
T Consensus        21 ~~~W~~~~~~~~i~v~~r~~~~-----~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~~~~~~~v~   94 (215)
T cd08877          21 SDGWTLQKESEGIRVYYKFEPD-----GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQLGRADKVC   94 (215)
T ss_pred             CCCcEEeccCCCeEEEEEeCCC-----CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEeecCCceEEE
Confidence            5679999999999999887652     224689999999999999999999997 5999999999999999999999999


Q ss_pred             EEEEeeCcccCcccCceeEEEEeeEe---cCCCcEEEEEeeeechh
Q 019858          278 YHRLQLDWFPMFVWPRDLCYVRYWRR---NDDGSYGSMRTVVHNQD  320 (335)
Q Consensus       278 y~~~~p~wlp~~~~~RDlv~~RyWrR---~~DGsYvIl~~Sv~H~~  320 (335)
                      |.+++++|   -+++||+|+. .|..   ++||+++|+..|+.|+.
T Consensus        95 y~~~~~Pw---Pv~~RD~v~~-~~~~~~~~~~~~i~i~~~si~~~~  136 (215)
T cd08877          95 YLRVDLPW---PLSNREAVFR-GFGVDRLEENGQIVILLKSIDDDP  136 (215)
T ss_pred             EEEEeCce---EecceEEEEE-EEEEeeeccCCCEEEEEecCCCCc
Confidence            99999544   4899999986 3432   28999999999999875

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.34  E-value=1.3e-11  Score=102.19  Aligned_cols=90  Identities=21%  Similarity=0.391  Sum_probs=73.1

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecc------eeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVY   75 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~------~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~y   75 (335)
                      +.++|||.+.       --.|+|||||++.      .|.|||....-.   ..|.|++-++.|..|..+-. ..|   =|
T Consensus         2 v~k~GyL~K~-------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~   70 (101)
T cd01257           2 VRKSGYLRKQ-------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH   70 (101)
T ss_pred             ccEEEEEeEe-------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence            5689999996       3467999999999      899999887532   48999999988888876422 222   28


Q ss_pred             EEEEEecCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858           76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~  108 (335)
                      +|+|+.   .++.+-|+|+|.+|++.|++||.+
T Consensus        71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence            999987   448999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.32  E-value=1.2e-11  Score=100.07  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +.|||.+.|...+ ..=+++|||||++  +.|.|||.+. +. .|++++-|.+.+.+.+. .+     .-+.|.|..   
T Consensus         1 l~GyL~K~g~~~~-~K~WkkRWFvL~~~~~~L~Yyk~~~-d~-~p~G~I~L~~~~~~~~~-~~-----~~~~F~i~t---   68 (95)
T cd01265           1 LCGYLHKIEGKGP-LRGRRSRWFALDDRTCYLYYYKDSQ-DA-KPLGRVDLSGAAFTYDP-RE-----EKGRFEIHS---   68 (95)
T ss_pred             CcccEEEecCCCC-CcCceeEEEEEcCCCcEEEEECCCC-cc-cccceEECCccEEEcCC-CC-----CCCEEEEEc---
Confidence            3699999997544 3334699999984  5899887544 44 89999999664444332 22     135788865   


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .++.+.|.|.|.+|+..|++||+.+
T Consensus        69 ~~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          69 NNEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhh
Confidence            4789999999999999999999987

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.27  E-value=3.2e-11  Score=99.16  Aligned_cols=96  Identities=25%  Similarity=0.339  Sum_probs=71.8

Q ss_pred             eeeEEEeeeccc-ccccceeeEEEEecce-------eeecccCCCCCCCccEEEEecCceEEeeCCcce--ecCceeEEE
Q 019858            8 EGWMVRYGRRKI-GRSFIHMRYFVLESRL-------LAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVL   77 (335)
Q Consensus         8 EGWly~~g~~~~-g~q~~~~RyFVL~g~~-------l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf   77 (335)
                      ||||.+.|.... +..-+++|||||+++-       |.|||..+ + ..|.+++-|+. |.+.+.|...  .+...-|+|
T Consensus         2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~-~-~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~~~f   78 (108)
T cd01266           2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR-K-FKLEFVIDLES-CSQVDPGLLCTAGNCIFGYGF   78 (108)
T ss_pred             ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC-C-CccceEEECCc-cEEEcccccccccCcccceEE
Confidence            899999987543 5566789999999875       58887543 3 48999999966 5554443221  112344788


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .|.-   ..+.+-|+|.|.||+..||+||.+.
T Consensus        79 ~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          79 DIET---IVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence            8873   5789999999999999999999753

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.24  E-value=5.8e-11  Score=98.69  Aligned_cols=98  Identities=17%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCcc-EEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPI-KTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pi-rs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .||||-+.|..=-.+--+++|||||+||.|.|||+++..  .|. +++.+..+..|..-....-...-.+.|.|...   
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp---   76 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA---   76 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCcc--CCCCceEEcccceEEeeccccccccccCcEEEEEcC---
Confidence            589999988753345567899999999999988877654  455 78999777777664322211223689999654   


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHH
Q 019858           86 YHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      ++++-|.|.|.+|++.|+++|+.|
T Consensus        77 ~rt~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          77 DKTYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             CceEEEEeCCHHHHHHHHHHHHhh
Confidence            599999999999999999999988

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.24  E-value=5.4e-11  Score=99.12  Aligned_cols=94  Identities=18%  Similarity=0.269  Sum_probs=74.2

Q ss_pred             eeeeEEEeeecc------cccccceeeEEEEe-cceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858            7 YEGWMVRYGRRK------IGRSFIHMRYFVLE-SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV   79 (335)
Q Consensus         7 ~EGWly~~g~~~------~g~q~~~~RyFVL~-g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i   79 (335)
                      +.|||++.+..+      ...-=+++|||||+ +.+|.||++++.+. .|.+++-|..++.|.+- .+. .+ .-+.|+|
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~-~p~G~IdL~~~~~V~~~-~~~-~~-~~~~f~I   76 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTT-LPQGTIDMNQCTDVVDA-EAR-TG-QKFSICI   76 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCc-ccceEEEccceEEEeec-ccc-cC-CccEEEE
Confidence            579999998774      45566789999997 68999888776555 89999999888888753 221 11 2568888


Q ss_pred             EecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858           80 YNKKEKYHRITMAAFNIQEALIWKEKIE  107 (335)
Q Consensus        80 yn~~~~~~~~~laa~s~eea~~W~~a~~  107 (335)
                      -..   ++.+-|.|.|.||+..|+++|.
T Consensus        77 ~tp---~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          77 LTP---DKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             ECC---CceEEEEeCCHHHHHHHHHHHH
Confidence            544   6999999999999999999985

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.23  E-value=7e-11  Score=96.69  Aligned_cols=94  Identities=23%  Similarity=0.377  Sum_probs=65.9

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEe-cceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~-g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      +.+||||.+.|..   ..-+++|||||+ +..|.|||++|.+.   ..|+....+.+ |.|... ..    ..-+.|.|-
T Consensus         1 v~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~-~~~~~~-~~----~~~~~F~i~   71 (102)
T cd01241           1 VVKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAE-CQLMKT-ER----PRPNTFIIR   71 (102)
T ss_pred             CcEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEee-eeeeec-cC----CCcceEEEE
Confidence            3589999999974   344569999999 67788899999655   45777777744 444321 11    123677776


Q ss_pred             ecC---CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           81 NKK---EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        81 n~~---~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      ...   ..++  +|.|.|.||...||+||+.+
T Consensus        72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence            221   1123  67799999999999999876

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.10  E-value=9.3e-10  Score=82.22  Aligned_cols=98  Identities=18%  Similarity=0.279  Sum_probs=74.1

Q ss_pred             eeeeEEEeeeccc-ccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            7 YEGWMVRYGRRKI-GRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         7 ~EGWly~~g~~~~-g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .+|||.+++.... +....++|||+|.++.|.+|+.++.....+ ....+ ..++|+......   +.-++|.|.+...+
T Consensus         1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~-~~~~l-~~~~v~~~~~~~---~~~~~F~i~~~~~~   75 (99)
T cd00900           1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP-GSIPL-SEISVEEDPDGS---DDPNCFAIVTKDRG   75 (99)
T ss_pred             CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC-CEEEc-cceEEEECCCCC---CCCceEEEECCCCC
Confidence            4799999997764 445566999999999999998877444221 45555 334466643322   34689999987557


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHH
Q 019858           86 YHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .+.+.|.|.|.+|+..|++||++|
T Consensus        76 ~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          76 RRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHhcC
Confidence            899999999999999999999875

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.07  E-value=1e-09  Score=92.76  Aligned_cols=98  Identities=18%  Similarity=0.314  Sum_probs=77.1

Q ss_pred             eeeeEEEeeeccccc-c--------------cceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee--
Q 019858            7 YEGWMVRYGRRKIGR-S--------------FIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH--   69 (335)
Q Consensus         7 ~EGWly~~g~~~~g~-q--------------~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~--   69 (335)
                      +||||++++.-+.-. -              =+.+|||||++..|.||+ +|.+ ..|.+.+++|.+..|+..+.+.+  
T Consensus         1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~-~~~~~vil~D~~f~v~~~~~~~~~~   78 (121)
T cd01254           1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS-AQILDVILFDVDFKVNGGGKEDISL   78 (121)
T ss_pred             CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC-CceeeEEEEcCCccEEeCCcccccc
Confidence            489999886654422 1              247999999999999776 5544 48999999999999998666411  


Q ss_pred             ------cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           70 ------HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        70 ------hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                            +...-+.|+|-|   .+|+++|.|.|.+++..|++||+.|
T Consensus        79 ~~~~~~~~~~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          79 AVELKDITGLRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             cccccccCCCceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence                  113458999965   5899999999999999999999876

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.04  E-value=2.3e-09  Score=87.60  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .+||||.+.+...-..+   .|||+|-+..|-|+|.+|...   -.+...+-+ .++.|++.-    +....+.|.|..+
T Consensus         3 ikeG~L~K~~~~~~~~k---~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l-~~~~v~~~~----~~~~~~~F~I~~~   74 (101)
T cd01219           3 LKEGSVLKISSTTEKTE---ERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDV-SGMQVCEGD----NLERPHSFLVSGK   74 (101)
T ss_pred             ccceEEEEEecCCCCce---eEEEEEeCCEEEEEEcccccCCCcEEEEEEEec-ccEEEEeCC----CCCcCceEEEecC
Confidence            47999999997665555   999999888999999765322   245556666 557777631    2345788888554


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      .   +.+.+.|.|+||-.+||+||+.||++
T Consensus        75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~  101 (101)
T cd01219          75 Q---RCLELQARTQKEKNDWVQAIFSIIDE  101 (101)
T ss_pred             C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence            3   89999999999999999999999874

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.00  E-value=2.6e-09  Score=86.28  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             eeeeEEEeee-----cccccccceeeEEEEecceeeecccCCCCCCCccE--EEEecCceEEeeC-CcceecCceeEEEE
Q 019858            7 YEGWMVRYGR-----RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK--TLLIDGNCRVEDR-GLKTHHGHMVYVLS   78 (335)
Q Consensus         7 ~EGWly~~g~-----~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pir--s~vid~~~rVed~-Gre~~hg~~~yvf~   78 (335)
                      |||+|.++-.     ++.+...+++|||||+|+.|.+||......+.+.+  .+-|+ ++.|+.- .-+    +--++|+
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~-~~~i~~~~~~~----k~~~~F~   75 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLT-GAQCEVASDYT----KKKHVFR   75 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEecc-CCEEEecCCcc----cCceEEE
Confidence            6899997644     55567788999999999999999966533222222  23343 5555432 111    2347899


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |...  ..+.+.|.|.|.||+.+|+.||+.|
T Consensus        76 l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          76 LRLP--DGAEFLFQAPDEEEMSSWVRALKSA  104 (104)
T ss_pred             EEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence            8864  6689999999999999999999754

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=98.97  E-value=3.7e-09  Score=78.30  Aligned_cols=94  Identities=23%  Similarity=0.347  Sum_probs=73.8

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC-CcceecCceeEEEEEEecCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~   84 (335)
                      ++|||++.....  .+-.++||++|.++.|.+|+..+... ..|...+.|.+ +.|... +.+    +.-++|.|-...+
T Consensus         1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~   73 (96)
T cd00821           1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDG   73 (96)
T ss_pred             CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCC
Confidence            589999988665  34455999999999999998777542 58889999966 666653 222    2458888887644


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                        +.+.|.|.|.+|+.+|+.+|+.|
T Consensus        74 --~~~~~~~~s~~~~~~W~~~l~~~   96 (96)
T cd00821          74 --RSYLLQAESEEEREEWIEALQSA   96 (96)
T ss_pred             --cEEEEEeCCHHHHHHHHHHHhcC
Confidence              89999999999999999999864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=98.97  E-value=2.1e-09  Score=88.94  Aligned_cols=92  Identities=10%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             eeeEEEeeecccccccceeeEEEEec----ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            8 EGWMVRYGRRKIGRSFIHMRYFVLES----RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         8 EGWly~~g~~~~g~q~~~~RyFVL~g----~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      -|||.+.|.+.  .--.++|||||.+    +.|.||+..+ + ..|++.+.+ .++.|.+. -++.- +..|.|.|++..
T Consensus         2 ~G~l~K~g~~~--~K~wK~rwF~l~~~~s~~~l~yf~~~~-~-~~p~gli~l-~~~~V~~v-~ds~~-~r~~cFel~~~~   74 (98)
T cd01245           2 KGNLLKRTKSV--TKLWKTLYFALILDGSRSHESLLSSPK-K-TKPIGLIDL-SDAYLYPV-HDSLF-GRPNCFQIVERA   74 (98)
T ss_pred             CCccccCCCCc--ccccceeEEEEecCCCCceEEEEcCCC-C-CCccceeec-cccEEEEc-ccccc-CCCeEEEEecCC
Confidence            49999988531  3446799999998    9999776544 3 489985444 77777763 11111 224999999986


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~  108 (335)
                      .| ..+.|+|.+ ||+++||++|+.
T Consensus        75 ~~-~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          75 LP-TVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CC-eEEEEeCCH-HHHHHHHHHHhc
Confidence            65 566777777 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=98.97  E-value=2.9e-09  Score=91.25  Aligned_cols=103  Identities=20%  Similarity=0.314  Sum_probs=71.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEee--CCcceecCceeEEEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVED--RGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed--~Gre~~hg~~~yvf~iy   80 (335)
                      ++|.|+|....... |..-+++|||||+|++|.||| +|.+.  ..|++++-|..++.+.-  --|+...+.--|.+++.
T Consensus         1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~   78 (122)
T cd01263           1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW   78 (122)
T ss_pred             CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence            46899999766443 788899999999999999665 55553  68999999966555332  22333333334555544


Q ss_pred             ecC---------------CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           81 NKK---------------EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        81 n~~---------------~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      ...               ...-.+-|+|.|.||...|++||..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence            222               11223678999999999999999864

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=4.8e-09  Score=101.53  Aligned_cols=99  Identities=19%  Similarity=0.323  Sum_probs=76.5

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .++.||||++.|.|+  ---+.+|||||..|+|. |.+--.|+ +|-+-+.+ +|.-|..    .---+-.|.|.||+.+
T Consensus       259 npdREGWLlKlgg~r--vktWKrRWFiLtdNCLY-YFe~tTDK-EPrGIIpL-eNlsir~----VedP~kP~cfEly~ps  329 (395)
T KOG0930|consen  259 NPDREGWLLKLGGNR--VKTWKRRWFILTDNCLY-YFEYTTDK-EPRGIIPL-ENLSIRE----VEDPKKPNCFELYIPS  329 (395)
T ss_pred             CccccceeeeecCCc--ccchhheeEEeecceee-eeeeccCC-CCCcceec-cccceee----ccCCCCCCeEEEecCC
Confidence            367899999999873  34567999999999997 66666666 77766666 5554432    2222568999999998


Q ss_pred             CCcce-------------------EEEeecCHHHHHHHHHHHHHHHh
Q 019858           84 EKYHR-------------------ITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        84 ~~~~~-------------------~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      ++..+                   +++.|-|.||...||++++.+|-
T Consensus       330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence            86655                   46889999999999999999975

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.89  E-value=1.9e-08  Score=82.87  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=72.4

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      ..||||.++.+..  .+   .|||+|=...|=|+++.+.+.  -.+.+.+-+ .++.|++..-+   .+..+.|.||.+ 
T Consensus         3 ikEG~L~K~~~k~--~~---~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L-~~~~V~~~~~~---~~~~~~F~I~~~-   72 (99)
T cd01220           3 IRQGCLLKLSKKG--LQ---QRMFFLFSDLLLYTSKSPTDQNSFRILGHLPL-RGMLTEESEHE---WGVPHCFTIFGG-   72 (99)
T ss_pred             eeEEEEEEEeCCC--Cc---eEEEEEccceEEEEEeecCCCceEEEEEEEEc-CceEEeeccCC---cCCceeEEEEcC-
Confidence            3799999998643  33   777777777777788777544  256777777 88889874221   246789999954 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                        .+.++|.|.|.+|...||++|+.||+
T Consensus        73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          73 --QCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence              57899999999999999999999986

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=98.88  E-value=1.3e-08  Score=85.71  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC-CCcceEEEee
Q 019858           15 GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK-EKYHRITMAA   93 (335)
Q Consensus        15 g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~-~~~~~~~laa   93 (335)
                      +..++.+-=.++|||+|+|+.|+|||.++..+..|+..+.+ .+|.|...  .++-.+ -|.+.+-... ++.+.+-|.|
T Consensus        11 ~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl-~gcev~~d--v~~~~~-kf~I~l~~ps~~~~r~y~l~c   86 (106)
T cd01237          11 KPKKLTLKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNL-KGCEVTPD--VNVAQQ-KFHIKLLIPTAEGMNEVWLRC   86 (106)
T ss_pred             CcchhhhhhheeEEEEEeCCEEEEEccchhcCCCCeEEEec-CceEEccc--cccccc-ceEEEEecCCccCCeEEEEEC
Confidence            34455555567999999999999999988777899999999 77777752  111112 3888888764 6678999999


Q ss_pred             cCHHHHHHHHHHHHHH
Q 019858           94 FNIQEALIWKEKIELV  109 (335)
Q Consensus        94 ~s~eea~~W~~a~~~A  109 (335)
                      .|.++-++||.|++.|
T Consensus        87 dsEeqya~Wmaa~rla  102 (106)
T cd01237          87 DNEKQYAKWMAACRLA  102 (106)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999999

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=98.87  E-value=1.1e-08  Score=85.28  Aligned_cols=94  Identities=18%  Similarity=0.418  Sum_probs=52.6

Q ss_pred             eeeeEEEeeecccccccceeeEEEEe-cceeeecccCCCCC-------CCccEEEE---ecC---ceEEee----CCcce
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN-------QVPIKTLL---IDG---NCRVED----RGLKT   68 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~-g~~l~~YK~~P~~~-------~~Pirs~v---id~---~~rVed----~Gre~   68 (335)
                      +|||||+.+.- +|-. +++|||||+ ++.|.|||. |.+.       +.+.+.+.   ++.   ...+..    +-.+.
T Consensus         1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (112)
T PF15413_consen    1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE   77 (112)
T ss_dssp             EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred             CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence            69999998854 4433 459999999 999999998 3221       11222111   111   111111    22334


Q ss_pred             ecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        69 ~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      +|..++.+      ...++++-|-|.|.||-..|++||++|
T Consensus        78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            44444444      346889999999999999999999986

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=98.83  E-value=2e-08  Score=84.21  Aligned_cols=96  Identities=16%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcce-ecCceeEEEEEEecC--
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT-HHGHMVYVLSVYNKK--   83 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~-~hg~~~yvf~iyn~~--   83 (335)
                      .-|||-.....-+ .-=++.|||||..+.|.+||..- + .+|-.-+.+ +|++|-+.  |. .-++. ++|.|||..  
T Consensus         3 rkgwl~~~n~~~m-~ggsK~~WFVLt~~~L~wykd~e-e-KE~kyilpL-dnLk~Rdv--e~gf~sk~-~~FeLfnpd~r   75 (110)
T cd01256           3 RKGWLSISNVGIM-KGGSKDYWFVLTSESLSWYKDDE-E-KEKKYMLPL-DGLKLRDI--EGGFMSRN-HKFALFYPDGR   75 (110)
T ss_pred             eeeeEEeecccee-cCCCcceEEEEecceeeeecccc-c-ccccceeec-cccEEEee--cccccCCC-cEEEEEcCccc
Confidence            4699977543322 22357999999999999998553 3 377777778 78888774  22 12223 999999664  


Q ss_pred             ---CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 ---EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ---~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                         ...+|++|+|.|.||.++||-+|-.|
T Consensus        76 nvykd~k~lel~~~~~e~vdswkasflra  104 (110)
T cd01256          76 NVYKDYKQLELGCETLEEVDSWKASFLRA  104 (110)
T ss_pred             ccccchheeeecCCCHHHHHHHHHHHHhc
Confidence               45689999999999999999999988

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=98.80  E-value=3.5e-08  Score=81.39  Aligned_cols=83  Identities=17%  Similarity=0.122  Sum_probs=65.6

Q ss_pred             ccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHH
Q 019858           18 KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ   97 (335)
Q Consensus        18 ~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~e   97 (335)
                      +.+ --+++|||||.++-|.|||...   ..|++++-|..-.-|+..+.....  .-|+|.|...   ++.+-|-|.|.+
T Consensus        16 ~~~-~n~KkRwF~Lt~~~L~Y~k~~~---~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~~   86 (98)
T cd01244          16 KKV-LHFKKRYFQLTTTHLSWAKDVQ---CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAPV   86 (98)
T ss_pred             ccC-cCCceeEEEECCCEEEEECCCC---CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCHH
Confidence            455 4578999999999999998543   479999999666667766554432  2489999774   479999999999


Q ss_pred             HHHHHHHHHHHH
Q 019858           98 EALIWKEKIELV  109 (335)
Q Consensus        98 ea~~W~~a~~~A  109 (335)
                      |+..|++||+.+
T Consensus        87 E~~~Wi~al~k~   98 (98)
T cd01244          87 EATDWLNALEKQ   98 (98)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15409 PH_8: Pleckstrin homology domain

Probab=98.70  E-value=3.8e-08  Score=80.45  Aligned_cols=83  Identities=20%  Similarity=0.451  Sum_probs=57.0

Q ss_pred             eeEEEeeecccccccceeeEEEE--ecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            9 GWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         9 GWly~~g~~~~g~q~~~~RyFVL--~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      |||.+++++++  |=+++|||||  +.-.|.||+.+....   ..||+.++|.-+.    ..+++         .| .+ 
T Consensus         1 G~llKkrr~~l--qG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I---------~i-ds-   63 (89)
T PF15409_consen    1 GWLLKKRRKPL--QGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRI---------DI-DS-   63 (89)
T ss_pred             CcceeeccccC--CCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEE---------EE-Ec-
Confidence            89999987764  5555999999  999999998554322   4556555553321    11222         12 22 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       +...+-|=|.|.+|...|+.||+.|
T Consensus        64 -g~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   64 -GDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence             3445666799999999999999987

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=98.40  E-value=3.1e-06  Score=72.06  Aligned_cols=96  Identities=16%  Similarity=0.207  Sum_probs=70.5

Q ss_pred             eeeeEEEeee-------cccccccceeeEEEEecceeeecccCCCCC-----CCccEEEEecCce-EEeeCCcceecCce
Q 019858            7 YEGWMVRYGR-------RKIGRSFIHMRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNC-RVEDRGLKTHHGHM   73 (335)
Q Consensus         7 ~EGWly~~g~-------~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-----~~Pirs~vid~~~-rVed~Gre~~hg~~   73 (335)
                      +||+|+++-.       -++|..++++||.||+|+.|..||+.-...     +.+-..+-|.+.. .|.-     ...+-
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~-----dy~Kr   76 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRAS-----DYSKK   76 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeec-----cccCC
Confidence            5899998741       234678999999999999999999885311     1223455564433 3332     23356


Q ss_pred             eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      -+||+|-.  ...+.+-|-|.|.||+.+|+.+|..|
T Consensus        77 ~~VF~L~~--~~g~~~lfqA~~~ee~~~Wi~~I~~~  110 (117)
T cd01230          77 PHVFRLRT--ADWREFLFQTSSLKELQSWIERINVV  110 (117)
T ss_pred             CcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            67888876  46688999999999999999999988

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins

Probab=98.23  E-value=3.5e-06  Score=79.44  Aligned_cols=89  Identities=18%  Similarity=0.357  Sum_probs=78.4

Q ss_pred             cceEEeeeeecCHHHHHHHhhccCCCccc-ccceeeeeeEEEEEeCc--------ccEEEEEEeeCcccCcccCceeEEE
Q 019858          228 RAMKAVGVVEASCEEIFELVMSMDGTRYE-WDCSFQYGSLVEEVDGH--------TAILYHRLQLDWFPMFVWPRDLCYV  298 (335)
Q Consensus       228 ~~~kavgvV~aspe~IFe~lm~~d~~R~e-WD~~~~~~~vVE~iD~H--------tdIvy~~~~p~wlp~~~~~RDlv~~  298 (335)
                      -|-++.|+|..+|..|-|.+||.++ ..+ .++-...+.+++.|+--        ..++|-+++.  +.+.+.+|||+++
T Consensus        60 eASR~~glV~m~~~~lVe~lmD~~k-W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~--pSpLVp~Re~~fL  136 (229)
T cd08875          60 EASRACGLVMMNAIKLVEILMDVNK-WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQV--PSPLVPTREFYFL  136 (229)
T ss_pred             EEEeeeEEEecCHHHHHHHHhChhh-hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhccc--CcccccCCeEEEE
Confidence            4669999999999999999998875 444 67799999999999544        6789999986  4678999999999


Q ss_pred             EeeEecCCCcEEEEEeeeech
Q 019858          299 RYWRRNDDGSYGSMRTVVHNQ  319 (335)
Q Consensus       299 RyWrR~~DGsYvIl~~Sv~H~  319 (335)
                      ||=..-+||+++||-.|+.|.
T Consensus       137 Ryc~~l~dG~w~VvdvSld~~  157 (229)
T cd08875         137 RYCKQLEDGLWAVVDVSIDGV  157 (229)
T ss_pred             EEEEEeCCCeEEEEEEeeccc
Confidence            999999999999999999986

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=97.85  E-value=0.00012  Score=61.63  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=59.9

Q ss_pred             eeeeEEEeee-----ccc--ccccceeeEEEEecceeeecccCC--C----------CCCCccEEEEecCceEEeeCCcc
Q 019858            7 YEGWMVRYGR-----RKI--GRSFIHMRYFVLESRLLAYYKKKP--Q----------DNQVPIKTLLIDGNCRVEDRGLK   67 (335)
Q Consensus         7 ~EGWly~~g~-----~~~--g~q~~~~RyFVL~g~~l~~YK~~P--~----------~~~~Pirs~vid~~~rVed~Gre   67 (335)
                      +||||+++-.     .+.  +..-++.=|.||+|..|.+||...  .          .+..|+.++-| .+|..+..  .
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L-~~a~a~~a--~   78 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISL-HHALAEIA--S   78 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE--TT-EEEEE--T
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEe-cceEEEeC--c
Confidence            6999999522     223  555677889999999999999832  1          12356777888 45555541  1


Q ss_pred             eecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           68 THHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        68 ~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      . +-+--+||+|-  .....++-|-|.|.||+..|+.+|.-+
T Consensus        79 d-Y~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~  117 (119)
T PF15410_consen   79 D-YTKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYA  117 (119)
T ss_dssp             T-BTTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred             c-cccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence            1 22456788886  456889999999999999999999876

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.71  E-value=0.00054  Score=58.23  Aligned_cols=99  Identities=17%  Similarity=0.323  Sum_probs=67.4

Q ss_pred             eeeEEEeeecc--cccccceeeEEEEecceeeec--ccCCCCC---CCccEEEEecCceEEeeCCcceecCc----eeEE
Q 019858            8 EGWMVRYGRRK--IGRSFIHMRYFVLESRLLAYY--KKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGH----MVYV   76 (335)
Q Consensus         8 EGWly~~g~~~--~g~q~~~~RyFVL~g~~l~~Y--K~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~----~~yv   76 (335)
                      -.|||++.++.  .+..=.|.|||-|..+....|  ..+|...   ..=.+++.|++=..|.|.- .+--|.    --+.
T Consensus        12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~-~~~~~~~~~~~~~s   90 (123)
T PF12814_consen   12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGN-PSPPGLKKPDHNKS   90 (123)
T ss_pred             ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCC-CCCccccccccceE
Confidence            35999988776  223467999999999655544  4445433   3345778887777777641 111111    2344


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |.|.   ...+.|+|.|.|.|+++-|+.||+-.|
T Consensus        91 i~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen   91 IIIV---TPDRSLDLTAPSRERHEIWFNALRYLL  121 (123)
T ss_pred             EEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence            5544   446899999999999999999998764

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=97.56  E-value=0.00042  Score=59.58  Aligned_cols=95  Identities=19%  Similarity=0.287  Sum_probs=64.3

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecCCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      +||||+|+-..---+-   ++|++|+.|.+.||+..-..  .|.|.+-+.+=+.|+.. |--...+...+.|.|--+   
T Consensus         2 kEGWmVHyT~~d~~rK---RhYWrLDsK~Itlf~~e~~s--kyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~---   73 (117)
T cd01239           2 KEGWMVHYTSSDNRRK---KHYWRLDSKAITLYQEESGS--RYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT---   73 (117)
T ss_pred             ccceEEEEecCcccee---eeEEEecCCeEEEEEcCCCC--eeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec---
Confidence            6999999876554444   89999999999999986543  56666666666677653 322234566777776531   


Q ss_pred             cceEE--------------------EeecCHHHHHHHHHHHHHH
Q 019858           86 YHRIT--------------------MAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        86 ~~~~~--------------------laa~s~eea~~W~~a~~~A  109 (335)
                      +..+=                    ......+-|..|-.||++|
T Consensus        74 ~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          74 TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            11111                    2334677889999999876

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.53  E-value=8e-05  Score=74.63  Aligned_cols=97  Identities=24%  Similarity=0.370  Sum_probs=69.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEe--cceeeecccCCCCC---CCccEEEEecCce-EEeeCCcceecCceeEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDN---QVPIKTLLIDGNC-RVEDRGLKTHHGHMVYVLS   78 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~--g~~l~~YK~~P~~~---~~Pirs~vid~~~-rVed~Gre~~hg~~~yvf~   78 (335)
                      +..||||.++|..--   .+|.|||+|.  |.++- ||++|.+.   ..|+---.|-+|- |-.++-|-    +++-|=|
T Consensus        15 vvkEgWlhKrGE~Ik---nWRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFiiRc   86 (516)
T KOG0690|consen   15 VVKEGWLHKRGEHIK---NWRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFIIRC   86 (516)
T ss_pred             hHHhhhHhhcchhhh---cccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEEEe
Confidence            458999999997543   4669999995  77887 99999886   5788776664443 33344333    3566666


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      +-.+.--+|  +|.+.|++|-..|++|++.+-+
T Consensus        87 LQWTTVIER--TF~ves~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen   87 LQWTTVIER--TFYVESAEERQEWIEAIQAVSN  117 (516)
T ss_pred             eeeeeeeee--eeecCCHHHHHHHHHHHHHHhh
Confidence            655443333  6889999999999999997643

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=97.45  E-value=0.00032  Score=59.76  Aligned_cols=95  Identities=19%  Similarity=0.339  Sum_probs=66.3

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecc-----eeeecccCCCCCCCccEEEEecCceEEeeCCcceec----------
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESR-----LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHH----------   70 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~-----~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~h----------   70 (335)
                      .++|||++.|.+.  +-=+++|||||.|-     .+..|+++.   .+|-..+.+|+. .|.=  .+...          
T Consensus         3 k~sGyL~k~Gg~~--~KkWKKRwFvL~qvsQYtfamcsy~ekk---s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~~   74 (117)
T cd01234           3 KHCGYLYAIGKNV--WKKWKKRFFVLVQVSQYTFAMCSYREKK---AEPTEFIQLDGY-TVDY--MPESDPDPNSELSLQ   74 (117)
T ss_pred             ceeEEEEeccchh--hhhhheeEEEEEchhHHHHHHHhhhhhc---CCchhheeecce-EEec--cCCCCCCcccccccc
Confidence            3899999999643  34467999999964     233477665   366667778544 3432  22222          


Q ss_pred             CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      |+-+|    +|.-...+.+.||+.+..|---|++|+=.|-+|
T Consensus        75 gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yratgq  112 (117)
T cd01234          75 GGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRATGQ  112 (117)
T ss_pred             cchhh----hheeccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence            33332    466688999999999999999999999999444

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=97.44  E-value=0.0033  Score=53.50  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=72.9

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC--Cccee-cCceeEEEEEEec
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR--GLKTH-HGHMVYVLSVYNK   82 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~--Gre~~-hg~~~yvf~iyn~   82 (335)
                      ++|=|.++..++.-.|   .|+|.|=.++|=|=|++-..+ .--.|--+.=..|.|.|.  |++.. +..+-++|.|||.
T Consensus         4 ~~Gel~~~s~~~g~~q---~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~   80 (109)
T cd01224           4 LQGEATRQKQNKGWNS---SRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE   80 (109)
T ss_pred             EeeeEEEEecccCCcc---cEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence            6777777775544345   899999888888777643222 344555555588888886  76653 3357789999997


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~  108 (335)
                       .++.-+.|-|.|+||-.+||+||..
T Consensus        81 -~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          81 -STDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             -CCCeEEEEEECCHHHHHHHHHHHHH
Confidence             6677899999999999999999975

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=97.26  E-value=0.0045  Score=51.86  Aligned_cols=97  Identities=16%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCC-CccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ-VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~-~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      .+||=|.++-  +-+.+   .|||+|=...|=|=+..+..+. ..-..+-+ .++.|++..-+   ..+...|.|.++  
T Consensus         5 i~eG~L~K~~--rk~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L-~~~~v~~~~d~---~~~~n~f~I~~~--   73 (104)
T cd01218           5 VGEGVLTKMC--RKKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPL-EGVQVESIEDD---GIERNGWIIKTP--   73 (104)
T ss_pred             EecCcEEEee--cCCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEc-cceEEEecCCc---ccccceEEEecC--
Confidence            4788888877  34445   6899998888874222222220 11112233 55666653211   235678999885  


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                       .+...+.|.|++|-..||++|++||++..
T Consensus        74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~~l  102 (104)
T cd01218          74 -TKSFAVYAATETEKREWMLHINKCVTDLL  102 (104)
T ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence             56889999999999999999999998753

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=97.24  E-value=0.0041  Score=53.93  Aligned_cols=102  Identities=17%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             CceeeeEEEeeec--ccccccceeeEEEEecceeeecccCCCCC----CCccEEEEe-cCceEEeeCC-cc---eecCce
Q 019858            5 VVYEGWMVRYGRR--KIGRSFIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLI-DGNCRVEDRG-LK---THHGHM   73 (335)
Q Consensus         5 ~~~EGWly~~g~~--~~g~q~~~~RyFVL~g~~l~~YK~~P~~~----~~Pirs~vi-d~~~rVed~G-re---~~hg~~   73 (335)
                      ..|||||=.-..+  |-|++   ++|.||.+.-|+.|-..+...    .+|.-.+-+ |+-+-|..-. -+   .-....
T Consensus         2 t~~EGwvkvP~~~~~krGW~---r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDi   78 (122)
T cd01243           2 TAYEGHVKIPKPGGVKKGWQ---RALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDI   78 (122)
T ss_pred             ccceeeEeccCCCCcccCce---EEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccC
Confidence            4699999654442  34888   999999999999897544322    355555666 6677775421 11   112367


Q ss_pred             eEEEEEEecC----CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           74 VYVLSVYNKK----EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        74 ~yvf~iyn~~----~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .|+|.|-.+-    -....+-|-|.|..|-.+|..||++.
T Consensus        79 P~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          79 PCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             CeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            8999998642    34577889999999999999999986

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=97.17  E-value=0.00013  Score=75.21  Aligned_cols=125  Identities=15%  Similarity=0.300  Sum_probs=94.6

Q ss_pred             ccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeec-CHHHHHHHhhccCCCcccccceeeeeeEEEEEeCc
Q 019858          195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEA-SCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH  273 (335)
Q Consensus       195 v~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~a-spe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~H  273 (335)
                      +-.-..|++|.=..-.++|.-.-+..+...   -.+||...|.+ |+.++..+.-+++ .|-+|++.++.-+|||+|-+.
T Consensus       399 ~g~d~nwqlFaeegemkmy~re~eeng~~~---Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~vve~is~d  474 (611)
T KOG1739|consen  399 VGGDANWQLFAEEGEMKMYRREVEENGIVL---DPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFHVVETISDD  474 (611)
T ss_pred             ccccchhhhhcccCCccccceeeccCCccc---CccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhceeeeeecCC
Confidence            333444888877766666654433211111   15666654444 9999999999998 699999999999999999999


Q ss_pred             ccEEEEEEeeCcccCcccCceeEEEEeeEecC------CCcEEEEEeeeechhhhhhcc
Q 019858          274 TAILYHRLQLDWFPMFVWPRDLCYVRYWRRND------DGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       274 tdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~------DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      +-|+|.+-+-.|.   .++||.+|+--=|+-+      -.+||||..||.|.+++-+.+
T Consensus       475 ~~~~~qthkrvwp---asqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~  530 (611)
T KOG1739|consen  475 AIIIYQTHKRVWP---ASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNR  530 (611)
T ss_pred             eEEEEecccccCC---CCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCc
Confidence            9999999998883   5799998876656532      257999999999999987763

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=97.11  E-value=0.0063  Score=52.08  Aligned_cols=101  Identities=20%  Similarity=0.300  Sum_probs=69.1

Q ss_pred             ceeeeEEEeeec----ccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeC-Cccee---cCceeEE
Q 019858            6 VYEGWMVRYGRR----KIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR-GLKTH---HGHMVYV   76 (335)
Q Consensus         6 ~~EGWly~~g~~----~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~-Gre~~---hg~~~yv   76 (335)
                      .|||||=.-..+    +.|++   ++|.||.+.-|..|-...... ..|.-.+=+|.-+-|..- --+-+   -....++
T Consensus         1 ~lEGwlsvP~~~~~~~k~gW~---r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~I   77 (112)
T cd01242           1 RMEGWLSLPNRTNKSRKPGWK---KQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKI   77 (112)
T ss_pred             CcceeEEccCCCCccccCCce---EEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeE
Confidence            389999766552    46888   999999999999886444222 445554444432222211 00011   1357899


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |.|--. +.++.+-|-|.|.+|-.+|..||..-|
T Consensus        78 F~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          78 FQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             EEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence            999875 557999999999999999999997654

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.06  E-value=0.00025  Score=58.66  Aligned_cols=93  Identities=13%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             eeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            8 EGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         8 EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      ||+||+..-..|     ++||.||.|+++-||-+|....  .--+++-++ ..-+|+  |-|..-.--+-+|-|.-....
T Consensus         1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~-s~Pm~~--~~~A~~N~Gi~A~G~L~~~~~   72 (104)
T PF15408_consen    1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVV-SHPMVN--FSQAVPNLGINAFGFLMYSPS   72 (104)
T ss_pred             CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhh-hccccc--ccccCCCCCeeEEEEEEecCC
Confidence            799999875554     4999999999999998887654  334455555 444454  344443334666777777788


Q ss_pred             cceEEEeecCHHHHHHHHHHHHH
Q 019858           86 YHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~  108 (335)
                      .+++++=|.|.|-+.+|++++..
T Consensus        73 ~~~~~~FA~S~~~~~~Wi~~mN~   95 (104)
T PF15408_consen   73 RRHVQCFASSKKVCQSWIQVMNS   95 (104)
T ss_pred             cchhhhhhhHHHHHHHHHHHhcC
Confidence            89999999999999999998853

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=96.49  E-value=0.048  Score=46.44  Aligned_cols=98  Identities=17%  Similarity=0.210  Sum_probs=65.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--------CCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      .+||=|.++...+-.-|   .|||+|=.++|=|=|.+..-.        .-=+|..+-=..+.|.|..-   +...-+.|
T Consensus         5 I~EG~L~ki~~~~~~~q---~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~knaF   78 (112)
T cd01261           5 IMEGTLTRVGPSKKAKH---ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNAF   78 (112)
T ss_pred             cccCcEEEEecccCCcc---eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCceE
Confidence            47899998887664455   899999999887666544211        01122222224455555311   12346789


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      .|.++.  .+.+.|-|.|+||-.+||+||..||.
T Consensus        79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            998763  45799999999999999999999853

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN02866 phospholipase D

Probab=96.49  E-value=0.022  Score=63.80  Aligned_cols=118  Identities=15%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             ceeeeEEEe------e-eccc------cccc----ceeeEEEEecceeeecccCCCCCCCccEEEEecCce---------
Q 019858            6 VYEGWMVRY------G-RRKI------GRSF----IHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNC---------   59 (335)
Q Consensus         6 ~~EGWly~~------g-~~~~------g~q~----~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~---------   59 (335)
                      -+||.+.++      | ..+.      +.++    +.||||||+...|. |-++|-+. .|+-.++.|-.-         
T Consensus       183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~-~~~~p~~~-~~~~v~lfD~~~~~~~~~~~~  260 (1068)
T PLN02866        183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLA-LLEDPFDA-KPLDIIVFDVLPASNGNGEGQ  260 (1068)
T ss_pred             cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEE-EEecCCCC-ceeEEEEEecccccccCCCcc
Confidence            389999988      2 1111      2222    35799999999998 67788777 799999998322         


Q ss_pred             -EEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhhhccCCCccccccccc
Q 019858           60 -RVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKS  131 (335)
Q Consensus        60 -rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~~~~~~~~s~~~~~  131 (335)
                       .+....-|.  ...=|.|+|-|   .+++++|=|.|..+|..|+.|++.|..+..+.- .+++-|-||-+-.
T Consensus       261 ~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~-~~~hRF~SFAP~r  327 (1068)
T PLN02866        261 ISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLRPPEGW-CHPHRFGSFAPPR  327 (1068)
T ss_pred             eeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhccCccc-cccCcCCCcCCCc
Confidence             222211111  13446778755   578899999999999999999999953332211 1234566665554

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=96.46  E-value=0.0073  Score=60.74  Aligned_cols=98  Identities=14%  Similarity=0.248  Sum_probs=62.9

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeec-ccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYY-KKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV   79 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~Y-K~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i   79 (335)
                      .+..+||+++.+... .   +.+|||.|.+..+.+. +..|...   ..++...-+.+.|=|-.  ...  ...-++|.|
T Consensus       376 Dv~~~G~l~k~~~~~-~---wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~--~~~--~~~~~~~~i  447 (478)
T PTZ00267        376 DVTHGGYLYKYSSDM-R---WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE--VYS--QKHPNQLVL  447 (478)
T ss_pred             CcccceEEeccCCCc-c---hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH--Hhc--CCCCceEEE
Confidence            455899999998644 2   5599999998877764 4455432   23333222444444411  001  123566777


Q ss_pred             EecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           80 YNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        80 yn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      -++.  .+++=+-|.|.+|.+.||+||++|++
T Consensus       448 ~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~~  477 (478)
T PTZ00267        448 WFNN--GQKIIAYAKTAEDRDQWISKFQRACG  477 (478)
T ss_pred             EecC--CcEEEEecCChHHHHHHHHHHHHHhC
Confidence            4433  44777778999999999999999953

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=96.22  E-value=0.05  Score=47.33  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             ceeeeEEEeeeccccc-----ccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee---------cC
Q 019858            6 VYEGWMVRYGRRKIGR-----SFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---------HG   71 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~-----q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~---------hg   71 (335)
                      .+.|+|..+..+....     .-...||++|=..+|=|=|++..+. --+.-..--..+.|++.+-...         ..
T Consensus         4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~-f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~   82 (125)
T cd01221           4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGST-FVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGR   82 (125)
T ss_pred             EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCe-EEEEeeccccceEEeecccccccccccccccCC
Confidence            3568888876554321     1134789999999998777766444 1111011124455665322211         23


Q ss_pred             ceeEEEEEE-ecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858           72 HMVYVLSVY-NKKEKYHRITMAAFNIQEALIWKEKIE  107 (335)
Q Consensus        72 ~~~yvf~iy-n~~~~~~~~~laa~s~eea~~W~~a~~  107 (335)
                      .-+|..++. |...+...+.|.|.|.+|-++||+||.
T Consensus        83 ~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          83 PNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            445555544 666788899999999999999999985

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=96.11  E-value=0.078  Score=44.64  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=58.0

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecc-eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      +-++|.|.+.+    | -|.++|.|+|.+. .|.|+  +|... +==+.+.+.+.+.|+-..-     .   .|.|.-. 
T Consensus        13 Il~~g~v~K~k----g-l~~kkR~liLTd~PrL~Yv--dp~~~-~~KGeI~~~~~l~v~~k~~-----~---~F~I~tp-   75 (104)
T PF14593_consen   13 ILKQGYVKKRK----G-LFAKKRQLILTDGPRLFYV--DPKKM-VLKGEIPWSKELSVEVKSF-----K---TFFIHTP-   75 (104)
T ss_dssp             EEEEEEEEEEE----T-TEEEEEEEEEETTTEEEEE--ETTTT-EEEEEE--STT-EEEECSS-----S---EEEEEET-
T ss_pred             EEEEEEEEEee----c-eEEEEEEEEEccCCEEEEE--ECCCC-eECcEEecCCceEEEEccC-----C---EEEEECC-
Confidence            34899999874    2 3489999999988 77755  35444 2126677778888886322     2   3445444 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                        .+++-|-. ...+|..|.+||++++.+.
T Consensus        76 --~RtY~l~d-~~~~A~~W~~~I~~~~~~~  102 (104)
T PF14593_consen   76 --KRTYYLED-PEGNAQQWVEAIEEVKKQY  102 (104)
T ss_dssp             --TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred             --CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence              67777765 5667999999999997664

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=96.09  E-value=0.022  Score=48.98  Aligned_cols=100  Identities=19%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEec-CceEEeeCCcceecCceeEEEEEE-e
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLID-GNCRVEDRGLKTHHGHMVYVLSVY-N   81 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid-~~~rVed~Gre~~hg~~~yvf~iy-n   81 (335)
                      +.|||||.+..-+-++-   +|||||++.=|.|. .+....  -.-..-+.++ .|+-..-.|++.+..-.-|.|+|- +
T Consensus         1 e~~g~LylK~~gkKsWK---k~~f~LR~SGLYy~-~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~   76 (114)
T cd01259           1 EMEGPLYLKADGKKSWK---KYYFVLRSSGLYYF-PKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAV   76 (114)
T ss_pred             CccceEEEccCCCccce---EEEEEEeCCeeEEc-cCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEecc
Confidence            36999999876666665   99999999999854 333333  1112223332 333344467888877888999984 3


Q ss_pred             cC-C-CcceEE-EeecCHHHHHHHHHHHHHH
Q 019858           82 KK-E-KYHRIT-MAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        82 ~~-~-~~~~~~-laa~s~eea~~W~~a~~~A  109 (335)
                      +. . .++-++ |-|++.+.-..|+-||+-|
T Consensus        77 ~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          77 GDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             ccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence            32 2 245565 4567788888999999988

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.90  E-value=0.017  Score=63.90  Aligned_cols=111  Identities=21%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceE--EeeCCcceecCceeEEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~r--Ved~Gre~~hg~~~yvf   77 (335)
                      +..+.|-|+|+..- ..=|+-=+|+||-+|.|+...|+ +.|.|.  ..||+.+=+..||.  ||.--|++--...-|-+
T Consensus       987 ~idVEYrGFLtmfe-d~sgfGaWhRyWc~L~gg~I~fW-k~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhi 1064 (1116)
T KOG3640|consen  987 AIDVEYRGFLTMFE-DGSGFGAWHRYWCALHGGEIKFW-KYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHI 1064 (1116)
T ss_pred             ccceeeeeeeeeee-ccCCCchhhhhhHHhcCCeeeee-cCcchhcccCcceeeehhhhhccccccchhhhccCCceeEE
Confidence            34566999999988 45566669999999999999955 578876  89999999977775  44322222212223334


Q ss_pred             EEEecCC---------CcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           78 SVYNKKE---------KYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        78 ~iyn~~~---------~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      .+.-.++         +.-+.-|||.+.||-..|+.+|..++++..
T Consensus      1065 e~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~LR 1110 (1116)
T KOG3640|consen 1065 EVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQLR 1110 (1116)
T ss_pred             EeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHHH
Confidence            4332221         112778999999999999999999987764

>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=95.83  E-value=0.024  Score=52.62  Aligned_cols=65  Identities=12%  Similarity=0.010  Sum_probs=52.4

Q ss_pred             ccccceee--eeeEEEEEeCcc----cEEEEEEeeCcccCcccCceeEEEEe-eEecC-CCcEEEEEeeeechhhh
Q 019858          255 YEWDCSFQ--YGSLVEEVDGHT----AILYHRLQLDWFPMFVWPRDLCYVRY-WRRND-DGSYGSMRTVVHNQDMY  322 (335)
Q Consensus       255 ~eWD~~~~--~~~vVE~iD~Ht----dIvy~~~~p~wlp~~~~~RDlv~~Ry-WrR~~-DGsYvIl~~Sv~H~~~~  322 (335)
                      .+|-..+.  ..++||..++-.    .|+|.+++   +|+-+++|||+.+.. -...+ -.+++|+..++.|+.++
T Consensus        66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p  138 (208)
T cd08864          66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVE  138 (208)
T ss_pred             hhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCC
Confidence            38888888  789999998776    89999999   555599999999988 33333 25678888899999987

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=95.77  E-value=0.034  Score=47.25  Aligned_cols=99  Identities=8%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             eeeEEEe-eecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEec-CceEEeeCC--cceecCceeEEEEEE
Q 019858            8 EGWMVRY-GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLID-GNCRVEDRG--LKTHHGHMVYVLSVY   80 (335)
Q Consensus         8 EGWly~~-g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid-~~~rVed~G--re~~hg~~~yvf~iy   80 (335)
                      =|||--. ..+..+.+-++.||++|+|+-|..|+..|.+.   ..|..+.-+= --+||--.|  +.. ..+.-+.|+|=
T Consensus         2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~-~~~~~~~F~ir   80 (108)
T cd01258           2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRL-NDQRDNCFLIR   80 (108)
T ss_pred             ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCc-CCCCceEEEEE
Confidence            3787665 22355667788999999999999999999876   5777665441 133432221  221 23455778776


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHH
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIEL  108 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~  108 (335)
                      -..- =..-.|..++..|.+.|.+||+.
T Consensus        81 tg~~-vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          81 TGTQ-VENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             cCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence            5422 26667899999999999999975

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=95.48  E-value=0.16  Score=43.09  Aligned_cols=93  Identities=17%  Similarity=0.281  Sum_probs=55.8

Q ss_pred             eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCC-------CCCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQD-------NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~-------~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      ||||||..-.+.+|-.. .+.|+..++  +.+.|---.|.+       -..+.+-.|.  .|.|...    -.-.-=|.|
T Consensus         1 k~GYLy~~~k~~~~~~W-vk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~--sc~~r~~----~~~dRRFCF   73 (104)
T cd01249           1 KEGYLYMQEKSKFGGSW-TKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLK--SCSRRKT----ESIDKRFCF   73 (104)
T ss_pred             CCceEEEEcCCCCCCeE-EEEEEEEEcCCcEEEEEecccccccccCcccccceEEeee--ecccccc----CCccceeeE
Confidence            68999999977776443 355555443  233222112221       1344444443  2333321    111345889


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHH
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIE  107 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~  107 (335)
                      .|-....+ ..++|=|.|..|-..||+|+.
T Consensus        74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence            99876444 679999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=94.32  E-value=0.021  Score=63.79  Aligned_cols=94  Identities=26%  Similarity=0.302  Sum_probs=69.3

Q ss_pred             eeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +||.||++|.-=-++-   .|||||..  ..|+||-..- | +.|=+-+=+-+---|...|-|++-.+.+|-+.     -
T Consensus      1636 ~eG~LyKrGA~lK~Wk---~RwFVLd~~khqlrYYd~~e-d-t~pkG~IdLaevesv~~~~~k~vdekgffdlk-----t 1705 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKLWK---PRWFVLDPDKHQLRYYDDFE-D-TKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-----T 1705 (1732)
T ss_pred             cccchhhcchhhcccc---cceeEecCCccceeeecccc-c-ccccchhhhhhhhhhcccCccccCccceeeee-----h
Confidence            8999999997766666   99999975  6888885433 2 35544333333344555677888888887664     3


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      ..+.+.|-|.|+-+|-.|++.|+.+|
T Consensus      1706 t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             hhHHHHHHhccchHHHHHHHHHHHhh
Confidence            45677888999999999999999874

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=94.32  E-value=0.49  Score=39.28  Aligned_cols=91  Identities=19%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .+||=+...+.   |    +.||+.|=.+.|=+=|++.  ..-=.|+-|.=.+.+|.++    ..| ....|.|-.....
T Consensus         5 lleg~l~~~~~---~----~eR~vFLFe~~ll~~K~~~--~~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~p   70 (97)
T cd01222           5 LLEGRFREHGG---G----KPRLLFLFQTMLLIAKPRG--DKYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDDP   70 (97)
T ss_pred             eeeceEEeecC---C----CceEEEEecccEEEEEecC--CeeEEEEEEEecceEEecC----CCC-CCcEEEEEecCCC
Confidence            35676654443   2    2466655444443334332  3344566665577777764    222 2578888665444


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHH
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      .+++.+-|.|.|+-..||++|+.||
T Consensus        71 ~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          71 KGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             ceEEEEEecCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999985

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=93.70  E-value=0.42  Score=41.27  Aligned_cols=86  Identities=14%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             ceeeEEEEecceeeecccCCCC---CCCccEEEEecCceEEeeCCccee---cCceeEEEEEEecCCCcceEEEeecCHH
Q 019858           24 IHMRYFVLESRLLAYYKKKPQD---NQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYNKKEKYHRITMAAFNIQ   97 (335)
Q Consensus        24 ~~~RyFVL~g~~l~~YK~~P~~---~~~Pirs~vid~~~rVed~Gre~~---hg~~~yvf~iyn~~~~~~~~~laa~s~e   97 (335)
                      .+.||..|=.+.+=.=|.+-..   .+--.|..+.=..++|+++...-.   .++--|.|.|--+ ++...++|.|.|.|
T Consensus        20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee   98 (116)
T cd01223          20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH   98 (116)
T ss_pred             CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence            4578877766666656654321   112234444335666776521111   2256678888775 55567999999999


Q ss_pred             HHHHHHHHHHHHH
Q 019858           98 EALIWKEKIELVI  110 (335)
Q Consensus        98 ea~~W~~a~~~Ai  110 (335)
                      |-.+||+||+.|+
T Consensus        99 ~K~kWm~al~~a~  111 (116)
T cd01223          99 LRKKWLKALEMAM  111 (116)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999995

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=92.26  E-value=0.53  Score=40.42  Aligned_cols=79  Identities=22%  Similarity=0.362  Sum_probs=59.6

Q ss_pred             ccccceeeEEEEecceeeecccCCCCC------CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEee
Q 019858           20 GRSFIHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAA   93 (335)
Q Consensus        20 g~q~~~~RyFVL~g~~l~~YK~~P~~~------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa   93 (335)
                      +-|=.+.|||||=.+.|-+....|...      .-|+.-+.|   ++.||.  +    +..++|.|--  +--+.+.+-|
T Consensus        24 ~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v---~~lEd~--e----~~~~aFeI~G--~li~~i~v~C   92 (111)
T cd01225          24 AGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIV---TRLEDT--E----ALKNAFEISG--PLIERIVVVC   92 (111)
T ss_pred             CccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEE---echHhc--c----CccceEEEec--cCcCcEEEEe
Confidence            344467999999999999999988553      578877777   334432  1    2367888874  4456788899


Q ss_pred             cCHHHHHHHHHHHHHH
Q 019858           94 FNIQEALIWKEKIELV  109 (335)
Q Consensus        94 ~s~eea~~W~~a~~~A  109 (335)
                      .|.+|...|++-|+.-
T Consensus        93 ~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          93 NNPQDAQEWVELLNAN  108 (111)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999875

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=91.99  E-value=0.45  Score=50.36  Aligned_cols=102  Identities=24%  Similarity=0.241  Sum_probs=76.3

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccE----EEEecCceEEeeCCcceecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK----TLLIDGNCRVEDRGLKTHHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pir----s~vid~~~rVed~Gre~~hg~~~yvf~   78 (335)
                      +.+.|+|+||.++--|-++-   |=||||+--=|. |..|-..+ +|--    .-+=+.|+-|---|||.+.--.-|.|+
T Consensus       315 ~~pei~GfL~~K~dgkKsWK---k~yf~LR~SGLY-ys~K~tsk-~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~  389 (622)
T KOG3751|consen  315 SPPEIQGFLYLKEDGKKSWK---KHYFVLRRSGLY-YSTKGTSK-EPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFC  389 (622)
T ss_pred             CCccccceeeecccccccce---eEEEEEecCcce-EccCCCCC-CchhhHHHHhcccCceEEeecchhccCCCCCceEE
Confidence            46779999999999888887   999999999997 54444333 3322    123356777777799999888999999


Q ss_pred             EEecC--CCcceEEE-eecCHHHHHHHHHHHHHH
Q 019858           79 VYNKK--EKYHRITM-AAFNIQEALIWKEKIELV  109 (335)
Q Consensus        79 iyn~~--~~~~~~~l-aa~s~eea~~W~~a~~~A  109 (335)
                      |--.+  .+.+-||| -|++.+.-..|+-||+-+
T Consensus       390 ~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~  423 (622)
T KOG3751|consen  390 IKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL  423 (622)
T ss_pred             eeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence            98433  33467776 457777889999999866

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=91.04  E-value=0.28  Score=53.26  Aligned_cols=94  Identities=33%  Similarity=0.498  Sum_probs=72.4

Q ss_pred             eeeeEEEe--eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceE-EeeCCcceecCceeEEEEEEecC
Q 019858            7 YEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR-VEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         7 ~EGWly~~--g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~r-Ved~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .||-|+++  |+-++|..-+.||||=|.+.-|. |-+.|..  .|+.++-+ .|++ ||....+++.  +-.||.|.-.-
T Consensus       567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls-~~Ksp~~--q~~~~Ipl-~nI~avEklee~sF~--~knv~qVV~~d  640 (800)
T KOG2059|consen  567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELS-YAKSPGK--QPIYTIPL-SNIRAVEKLEEKSFK--MKNVFQVVHTD  640 (800)
T ss_pred             cccceEeccccccchhhhhhhheEEEeccceeE-EecCCcc--CcccceeH-HHHHHHHHhhhhccC--CCceEEEEecC
Confidence            78888875  55677877889999999999999 6666644  57888888 6665 5544566664  44566665442


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                         +++-+-|.|--||..|..||..+
T Consensus       641 ---rtly~Q~~n~vEandWldaL~kv  663 (800)
T KOG2059|consen  641 ---RTLYVQAKNCVEANDWLDALRKV  663 (800)
T ss_pred             ---cceeEecCCchHHHHHHHHHHHH
Confidence               69999999999999999999887

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=90.84  E-value=0.62  Score=47.62  Aligned_cols=40  Identities=25%  Similarity=0.263  Sum_probs=34.8

Q ss_pred             cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      .-+.-|||.+.++  ..+.+-|-|.+.+|...||++|+++++
T Consensus       451 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        451 GSNAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             CCCCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            3357899999986  578899999999999999999999964

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=89.93  E-value=0.81  Score=48.84  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=63.4

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccC---CCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKK---PQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~---P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      +||=++++-.++-..|   .||++|=+..+-|=|.+   |..+-.+--..-+++....++     .++.-.-.|-+.   
T Consensus       274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~-----~~~~~~~tF~~~---  342 (623)
T KOG4424|consen  274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQED-----DNEELPHTFILT---  342 (623)
T ss_pred             hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhccc-----ccccCCceEEEe---
Confidence            8999999999988888   99999998877643322   222211211222212222222     222222233332   


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      -+.+.++|.|.+.+|...|+.+|+.|||.+
T Consensus       343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~~  372 (623)
T KOG4424|consen  343 GKKRGVELQARTEQEKKEWVQAIQDAIDKH  372 (623)
T ss_pred             cccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence            278999999999999999999999999876

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=89.29  E-value=4.2  Score=34.70  Aligned_cols=91  Identities=19%  Similarity=0.308  Sum_probs=59.2

Q ss_pred             cccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC--cceEEEee
Q 019858           17 RKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK--YHRITMAA   93 (335)
Q Consensus        17 ~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~--~~~~~laa   93 (335)
                      ++-|.+   +|-|+.+.-+|++=..++... ..|  ..+.-..+.+++-|.+.+-++...-|.|..+...  .+.+.+=|
T Consensus        21 ~~K~~e---R~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA   95 (114)
T cd01232          21 IQKGRE---RRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKA   95 (114)
T ss_pred             cCCCce---eEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEEC
Confidence            344555   777887877777432222211 122  1333344455555555555556778888877654  68999999


Q ss_pred             cCHHHHHHHHHHHHHHHhh
Q 019858           94 FNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        94 ~s~eea~~W~~a~~~Ai~q  112 (335)
                      .|.|+-..|+..|..+++|
T Consensus        96 ~s~e~K~~W~~~I~~il~~  114 (114)
T cd01232          96 NSQETKQEWVKKIREILQE  114 (114)
T ss_pred             CCHHHHHHHHHHHHHHhhC
Confidence            9999999999999998653

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=88.56  E-value=1.6  Score=48.76  Aligned_cols=97  Identities=13%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             eeEEEeeecc-------cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee-cCceeEEEEEE
Q 019858            9 GWMVRYGRRK-------IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-HGHMVYVLSVY   80 (335)
Q Consensus         9 GWly~~g~~~-------~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~-hg~~~yvf~iy   80 (335)
                      |+||.--++.       -++.=+.++|-||.|-.|.||.... + ..|.+.+-|++=.-|.-.--+++ +-+++|+|.||
T Consensus       496 ~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~-S-~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~  573 (1186)
T KOG1117|consen  496 GFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEK-S-TTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIY  573 (1186)
T ss_pred             ceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcC-C-CCCCceeeccceEEEeecCCCCCCCcCceeEEEEe
Confidence            8888755443       3455567899999999999775333 2 36777777755433333223333 44799999999


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      =  ..++-+.||+++++++.+|-+|+-.+
T Consensus       574 l--~~er~~~fgle~ad~l~~wt~aiaKh  600 (1186)
T KOG1117|consen  574 L--PGERVFLFGLETADALRKWTEAIAKH  600 (1186)
T ss_pred             e--cccceEEeecccHHHHHHHHHHHHHh
Confidence            5  67899999999999999999998644

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=88.07  E-value=1.3  Score=35.71  Aligned_cols=52  Identities=10%  Similarity=0.192  Sum_probs=38.3

Q ss_pred             ceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEe-CcccEEEEEE
Q 019858          229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-GHTAILYHRL  281 (335)
Q Consensus       229 ~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD-~HtdIvy~~~  281 (335)
                      .+...-.|+|||++||++|.|++. -.+|.......++++.-+ +...+.+..+
T Consensus         3 ~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~~~~~~~~~~~~~~~~~~~~~~~   55 (140)
T cd07819           3 KVSREFEIEAPPAAVMDVLADVEA-YPEWSPKVKSVEVLLRDNDGRPEMVRIGV   55 (140)
T ss_pred             eEEEEEEEeCCHHHHHHHHhChhh-hhhhCcceEEEEEeccCCCCCEEEEEEEE
Confidence            345667899999999999999973 669999998888876654 3333444333

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=86.63  E-value=0.82  Score=50.98  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=62.6

Q ss_pred             ccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHHH
Q 019858           22 SFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQE   98 (335)
Q Consensus        22 q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~ee   98 (335)
                      .+++.|||||.|..|..||+....+   +=||.+..+=-|++=.   ++.   -..|.|++|.  +|. +.-+-|.++-|
T Consensus      1049 ~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvkkk---lKp---Pt~wg~T~i~--ekh-h~~l~cd~s~~ 1119 (1186)
T KOG1117|consen 1049 NKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKKK---LKP---PTSWGFTAIS--EKH-HWYLCCDSSSE 1119 (1186)
T ss_pred             CccceEEEEecCcEEEEeehhhccccccccccccceEEeccccc---cCC---CCccceeeee--ecc-eEEEecCCccc
Confidence            4677999999999999999988766   8999998873332211   333   5789999993  333 78889999999


Q ss_pred             HHHHHHHHHHH
Q 019858           99 ALIWKEKIELV  109 (335)
Q Consensus        99 a~~W~~a~~~A  109 (335)
                      .-.|+-.+=-|
T Consensus      1120 ~~ewfts~fka 1130 (1186)
T KOG1117|consen 1120 QTEWFTSIFKA 1130 (1186)
T ss_pred             cchhhhhhhhh
Confidence            99999998777

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=86.11  E-value=1.6  Score=37.83  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             eeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       233 vgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      .-+|+|+|++||++|-|++. -.+|.......+++|. +++...
T Consensus         6 si~i~a~~~~v~~lvaDv~~-~P~~~~~~~~~~~l~~-~~~~~~   47 (146)
T cd08860           6 SIVIDAPLDLVWDMTNDIAT-WPDLFSEYAEAEVLEE-DGDTVR   47 (146)
T ss_pred             EEEEcCCHHHHHHHHHhhhh-hhhhccceEEEEEEEe-cCCeEE
Confidence            45899999999999999972 3499999999999985 444443

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=85.95  E-value=1.3  Score=36.57  Aligned_cols=42  Identities=19%  Similarity=0.156  Sum_probs=35.7

Q ss_pred             EEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCc
Q 019858          231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH  273 (335)
Q Consensus       231 kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~H  273 (335)
                      ++.-.|+|||+.||++|-|++. -.+|...+...++++.-++.
T Consensus         2 ~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~v~~~~~l~~~~~~   43 (144)
T cd08866           2 VARVRVPAPPETVWAVLTDYDN-LAEFIPNLAESRLLERNGNR   43 (144)
T ss_pred             eEEEEECCCHHHHHHHHhChhh-HHhhCcCceEEEEEEcCCCE
Confidence            5677899999999999999983 56999999999999875443

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=85.83  E-value=2.9  Score=34.52  Aligned_cols=86  Identities=15%  Similarity=0.100  Sum_probs=56.6

Q ss_pred             EeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEE
Q 019858          232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGS  311 (335)
Q Consensus       232 avgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvI  311 (335)
                      ..-.|+|||++||++|-|++. -.+|...+...+++|.-+.+ ..++....  + |  ...++++....+.  ++.+  |
T Consensus         3 ~s~~i~ap~~~v~~~i~D~~~-~~~~~p~~~~~~vl~~~~~~-~~~~~~~~--~-~--~~~~~~~~~~~~~--~~~~--i   71 (138)
T cd07813           3 KSRLVPYSAEQMFDLVADVER-YPEFLPWCTASRVLERDEDE-LEAELTVG--F-G--GIRESFTSRVTLV--PPES--I   71 (138)
T ss_pred             EEEEcCCCHHHHHHHHHHHHh-hhhhcCCccccEEEEcCCCE-EEEEEEEe--e-c--cccEEEEEEEEec--CCCE--E
Confidence            356789999999999999973 66999999999999987744 34454443  2 2  2478887655443  3443  3


Q ss_pred             EEeeeech-hhhhhcccc
Q 019858          312 MRTVVHNQ-DMYELTWRV  328 (335)
Q Consensus       312 l~~Sv~H~-~~~~~t~~~  328 (335)
                      -+.++..+ +..+.+|++
T Consensus        72 ~~~~~~g~~~~~~g~w~~   89 (138)
T cd07813          72 EAELVDGPFKHLEGEWRF   89 (138)
T ss_pred             EEEecCCChhhceeEEEE
Confidence            45555443 123445544

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	8e-24
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	3e-20
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	3e-19
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	1e-18
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	5e-18
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	4e-17
3qsz_A	189	STAR-related lipid transfer protein; structural ge	3e-15
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	1e-13
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	6e-13
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	8e-07
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	3e-06
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	3e-06
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	4e-06
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	8e-06
2d9y_A	117	Pleckstrin homology domain-containing protein fami	2e-05
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	2e-05
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-05
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	3e-05
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	3e-05
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	3e-05
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	6e-05
2dkp_A	128	Pleckstrin homology domain-containing family A mem	7e-05
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	9e-05
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	9e-05
3cxb_B	112	Pleckstrin homology domain-containing family M mem	1e-04
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-04
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	1e-04
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	2e-04
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	2e-04
2yry_A	122	Pleckstrin homology domain-containing family A mem	2e-04
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	2e-04
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	2e-04
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	7e-04

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258

 Score = 97.5 bits (242), Expect = 8e-24
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINN--QAFSRKHWRLLQCQNGLRIFEELLEV 219
           +        P      W       LS  N+++     ++ +W L    + +R++      
Sbjct: 29  IVSCKQTEVPLS--VPWDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLY------ 80

Query: 220 DYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYH 279
             L      +     VV     + F L+  +   R EWD  ++   LV++VD   AI + 
Sbjct: 81  -TLEDDKFLSFHMEMVVHVDAAQAFLLLSDLR-QRPEWDKHYRSVELVQQVDEDDAIYHV 138

Query: 280 RLQLDWFPMFVWPRDLCYVRYWRRNDDGSYG---SMRTVVH 317
                       P+D   +   R+  D       ++R+V  
Sbjct: 139 TSP--ALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTL 177

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221

 Score = 86.7 bits (214), Expect = 3e-20
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 183 DSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYL----PRSCSRAMKAVGVVEA 238
           D +L+      +A  +K   +L  Q G +   +    D +         +  +   VV+ 
Sbjct: 7   DQELAYLQQGEEAM-QKALGILSNQEGWKKESQQDNGDKVMSKVVPDVGKVFRLEVVVDQ 65

Query: 239 SCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYV 298
             E ++E ++       EW+ + +   +++++   T I +     +     V PRD   V
Sbjct: 66  PMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAA-EAAGNLVGPRDFVSV 124

Query: 299 RYWRRNDDGSYGSMRTVVHNQ 319
           R  +R       +        
Sbjct: 125 RCAKRRGSTCVLAGMATDFGN 145

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229

 Score = 84.4 bits (208), Expect = 3e-19
 Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 199 KHWRLLQCQNGLRIFEELLEVDYLPR----SCSRAMKAVGVVEASCEEIFELVMSMDGTR 254
              ++L  +   +  +     D +         +       +    E +++ V+      
Sbjct: 33  VVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERM 92

Query: 255 YEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRT 314
             W+ +     +++ V+ +T I  + +        V PRD   VR   R  D    S   
Sbjct: 93  VLWNKTVTACQILQRVEDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIA 151

Query: 315 VVHNQ 319
             H+ 
Sbjct: 152 TSHSA 156

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255

 Score = 83.0 bits (204), Expect = 1e-18
 Identities = 22/149 (14%), Positives = 59/149 (39%), Gaps = 10/149 (6%)

Query: 171 PPDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSR 228
                H + ++++  + N             +W+L+  +  ++++   +E + +      
Sbjct: 17  SSVGTHRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGEMKVYRREVEENGIVL---D 73

Query: 229 AMKAVGVVEA-SCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFP 287
            +KA   V+  +  E+     ++D  R +W+ + +   +VE +  +  I+Y   +  W  
Sbjct: 74  PLKATHAVKGVTGHEVCNYFWNVD-VRNDWETTIENFHVVETLADNAIIIYQTHKRVW-- 130

Query: 288 MFVWPRDLCYVRYWRRNDDGSYGSMRTVV 316
                RD+ Y+   R+    +     T +
Sbjct: 131 -PASQRDVLYLSVIRKIPALTENDPETWI 158

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224

 Score = 81.0 bits (199), Expect = 5e-18
 Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 12/156 (7%)

Query: 162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDY 221
           + R     G  D+       + + L N  I   +     WR+ +    + ++ +  E   
Sbjct: 11  IGRKIKLEGLSDV-----ASISTKLQNTLIQYHSIEEDEWRVAKKAKDVTVWRKPSE--- 62

Query: 222 LPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRL 281
                    KA GV++     + + +      R +WD       ++E  + +  ++ +  
Sbjct: 63  --EFNGYLYKAQGVMDDVVNNVIDHIRPGP-WRLDWDRLMTSLDVLEHFEENCCVMRYTT 119

Query: 282 QLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVH 317
                   + PR+     Y    ++G      +V  
Sbjct: 120 A-GQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEW 154

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231

 Score = 78.2 bits (192), Expect = 4e-17
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 194 QAFSRKHWRLLQCQNGLRIFEELLEVDYL----PRSCSRAMKAVGVVEASCEEIFELVMS 249
           +A + K  +  +   G +I  E   V               +  G+V  + EE+++ V  
Sbjct: 29  EAVAEKMLQYRRDTAGWKICREGNGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKP 88

Query: 250 -MDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308
            + G R +WD +     +++ +     +             + PRD   +   +R +DG+
Sbjct: 89  AVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAA-MKLISPRDFVDLVLVKRYEDGT 147

Query: 309 Y 309
            
Sbjct: 148 I 148

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189

 Score = 72.3 bits (177), Expect = 3e-15
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 201 WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260
           W L +   G++++        +  S  R  +    ++A+ +++ +++   +    +W   
Sbjct: 5   WSLAKDAEGIKVYVR-----NVEGSPLREFRGEVRLKAAADDVVKVLRDAN-AFRQWMPD 58

Query: 261 FQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQ 319
                L++  D      Y        P  V  RD  Y   + +  DG+       V + 
Sbjct: 59  VAASELLKATDTEQ-YHYLDN---SAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDY 113

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237

 Score = 68.6 bits (167), Expect = 1e-13
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWD 258
           K W      +   +  + +       +  +  KA   VEA    +   V+     R+ WD
Sbjct: 50  KGWVTCSSTDNTDLAFKKVG----DGNPLKLWKASVEVEAPPSVVLNRVLR---ERHLWD 102

Query: 259 CSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSY 309
             F    +VE +D  T I  + L           RD   +R W+ +   G  
Sbjct: 103 EDFVQWKVVETLDRQTEIYQYVL---NSMAPHPSRDFVVLRTWKTDLPKGMC 151

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214

 Score = 65.9 bits (160), Expect = 6e-13
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)

Query: 189 QNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELV 247
             +   A +   W+LL   +G+ I+          ++     K  GV+E  S   + ++ 
Sbjct: 18  AELQQPALAGADWQLLVETSGISIYRL-----LDKKTGLYEYKVFGVLEDCSPTLLADIY 72

Query: 248 MSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 307
           M  D  R +WD   +   L E+      ++Y  ++  +    +  RD  Y+R  R  D  
Sbjct: 73  MDSD-YRKQWDQYVK--ELYEQECNGETVVYWEVKYPFP---MSNRDYVYLRQRRDLDME 126

Query: 308 SYGSM 312
                
Sbjct: 127 GRKIH 131

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 47.4 bits (112), Expect = 8e-07
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 1   MSSKVVYEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYK----KKPQDNQVPIKTLL 54
           M+   + E  +++    ++K        R FVL   +L YY+    KK +   + +  + 
Sbjct: 11  MNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIK 70

Query: 55  IDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQ 114
                + +D  +   + +   V  V++    Y    + A + Q   +W +K++  I  + 
Sbjct: 71  CVEIVKNDDGVIPCQNKYPFQV--VHDANTLY----IFAPSPQSRDLWVKKLKEEIKNNN 124

Query: 115 ESQVS 119
              + 
Sbjct: 125 NIMIK 129

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 18/118 (15%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
            S V+  G+ V+ G     +++   RYF L+   + Y+K   +  + P++ + +    +V
Sbjct: 11  DSAVIKAGYCVKQGAVM--KNW-KRRYFQLDENTIGYFKS--ELEKEPLRVIPLKEVHKV 65

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVS 119
           ++            +  +      ++   + A + +E   W + +   I   +    S
Sbjct: 66  QECKQSDIMMR-DNLFEIVTTSRTFY---VQADSPEEMHSWIKAVSGAIVAQRGPGRS 119

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 15/116 (12%), Positives = 39/116 (33%), Gaps = 10/116 (8%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS     G++ ++G +   R +   R+F  + R    Y  +   +  P+ ++ +      
Sbjct: 5   SSGKKLCGYLSKFGGKGPIRGW-KSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFD 63

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
                +        +  +           + A   Q  L W +++++   +   S 
Sbjct: 64  CKADAEEG------IFEIKTPSRVIT---LKAATKQAMLYWLQQLQMKRWEFHNSP 110

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS V+ +G+M++  +    +++   R+FVL+  +++YY  +  D +     +L+D NC V
Sbjct: 5   SSGVLKQGYMMK--KGHRRKNW-TERWFVLKPNIISYYVSE--DLKDKKGDILLDENCCV 59

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           E    K     +     V    + +    ++A + ++   W + I   I   +      
Sbjct: 60  ESLPDKDGKKCL---FLVKCFDKTFE---ISASDKKKKQEWIQAIHSTIHLLKLGSSGP 112

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           M  K + EG++V+  +  +  ++    + VL    + +YKKK  ++  P   + + G+  
Sbjct: 1   MEPKRIREGYLVK--KGSVFNTW-KPMWVVLLEDGIEFYKKKSDNS--PKGMIPLKGSTL 55

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
                         +V  +   K++ H     A  ++E   W   I   I   +  +
Sbjct: 56  TSPCQDFGKRM---FVFKITTTKQQDHF--FQAAFLEERDAWVRDINKAIKCIEGLE 107

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           ++ V   GW+ +     + + + + R+FVL  R L YY K  ++    + ++ +    RV
Sbjct: 8   NAPVTKAGWLFKQASSGV-KQW-NKRWFVLVDRCLFYY-KDEKEES-ILGSIPLLS-FRV 62

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116
                  +     +     +   + +    +A + +E   W + +          
Sbjct: 63  AAVQPSDNISR-KHTFKAEHAGVRTYF--FSAESPEEQEAWIQAMGEAARVQSGP 114

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNC 59
           SS   YEG + + G     + +   R+FVL+     L YY  +   +      + +    
Sbjct: 5   SSGRSYEGILYKKGAFM--KPW-KARWFVLDKTKHQLRYYDHR--MDTECKGVIDLAEVE 59

Query: 60  RVEDRGLKTHHGHMV---YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116
            V            V       V   +  Y+     A ++  A  W ++I+  +     S
Sbjct: 60  AVAPGTPTIGAPKTVDEKAFFDVKTTRRVYN---FCAQDVPSAQQWVDRIQSCLSSGPSS 116

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 5   VVYEGWMVRYGRRK--IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           V+ +G++ +  +     G  +   R+ V+   L  YY    + ++ P  T LI G     
Sbjct: 3   VIKQGYLEKKSKDHSFFGSEW-QKRWCVVSRGLFYYYAN--EKSKQPKGTFLIKGYSVRM 59

Query: 63  DRGLKTHHGHMVYVLSVYNKKEK-YHRITMAAFNIQEALIWKEKIELVI 110
              L+           + ++  + Y      A +  EA  W ++I  ++
Sbjct: 60  APHLRRDSKKE-SCFELTSQDRRTYE---FTATSPAEARDWVDQISFLL 104

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 18/134 (13%)

Query: 3   SKVVYEGWMVRYGRRKIGRSF--IHMRYFVLES-RLLAYYKKKPQDNQVPIKTLLIDGNC 59
             +V EGW+      K G        RYF+L++      YK++PQD       L    N 
Sbjct: 6   VAIVKEGWLH-----KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPL---NNF 57

Query: 60  RVEDRGLKTHHGHMVYVLSVYNKKEK-YHRITMAAFNIQEALIWKEKIELVIDQHQESQV 118
            V    L            +   +       T      +E   W   I+ V D  ++ + 
Sbjct: 58  SVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQEE 117

Query: 119 SNGNKYVSFEYKSG 132
                    +++SG
Sbjct: 118 E------EMDFRSG 125

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSF--IHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNC 59
            S    EG++      K G        R+F L    L Y+K   Q +  PI+ L +    
Sbjct: 15  PSLGTKEGYLT-----KQGGLVKTWKTRWFTLHRNELKYFKD--QMSPEPIRILDLTECS 67

Query: 60  RVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
            V+    +      V    +      ++   + A    EA  W + +   + Q ++  
Sbjct: 68  AVQFDYSQER----VNCFCLVFPFRTFY---LCAKTGVEADEWIKILRWKLSQIRKQL 118

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           +  V   GW+ +     + R +   R+FVL    L YY K  ++    + ++L+     +
Sbjct: 8   NLPVHIRGWLHKQDSSGL-RLW-KRRWFVLSGHCLFYY-KDSREES-VLGSVLLPS-YNI 62

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
              G     G   +  +  +   + +   +AA  +++   W   +        +  
Sbjct: 63  RPDGPGAPRGRR-FTFTAEHPGMRTYV--LAADTLEDLRGWLRALGRASRAEGDDY 115

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 42.7 bits (100), Expect = 6e-05
 Identities = 20/151 (13%), Positives = 48/151 (31%), Gaps = 19/151 (12%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHM-----RYFVLESRLLAYYKKKPQDNQVPIKTLLID 56
             + + +GW+        G S +       R+FVL    L Y+ +   + +    T+ + 
Sbjct: 55  KQEALKQGWLHN---NGGGSSTLSRRNWKKRWFVLRQSKLMYF-ENDSEEK-LKGTVEVR 109

Query: 57  GNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116
               + D   K +       + +      +H   + A + ++A  W   +  V     + 
Sbjct: 110 SAKEIIDNTNKEN------GIDIIMADRTFH---LIAESPEDASQWFSVLSQVHSSTDQE 160

Query: 117 QVSNGNKYVSFEYKSGMDNGRNGSSSDHESQ 147
                ++  + +   G  +     S      
Sbjct: 161 IREMHDEQANPQNAVGTLDVGLIDSVCASDS 191

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           ++ VV  GW+ +     + + +   R+FVL    L YY +  ++    + ++L+    ++
Sbjct: 18  NAPVVRRGWLYKQDSTGM-KLW-KKRWFVLSDLCLFYY-RDEKEEG-ILGSILLPS-FQI 72

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVS 119
                + H     Y     +   + +         +E  +W + +            S
Sbjct: 73  ALLTSEDHINRK-YAFKAAHPNMRTYY--FCTDTGKEMELWMKAMLDAALVQTSGPSS 127

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 14/137 (10%)

Query: 3   SKVVYEGWMVR-----YGRRKIGRSF--IHMRYFVLESRLLAYYK-KKPQDNQVPIKTLL 54
           S    EGW+          +++G S       Y VL    L  YK K+ Q      +  +
Sbjct: 1   SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60

Query: 55  IDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQ 114
               C ++    +T   +   V  +     +       A +  + L W + I+   + ++
Sbjct: 61  SVNACLIDISYSETKRKN---VFRLTTSDCECL---FQAEDRDDMLAWIKTIQESSNLNE 114

Query: 115 ESQVSNGNKYVSFEYKS 131
           E         +S   K 
Sbjct: 115 EDTGVTNRDLISRRIKE 131

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 5   VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR 64
           + +EG+++        R + H  +  L    L +Y    + + + +  L I     + ++
Sbjct: 18  LYFEGFLLIKRSGY--REYEH-YWTELRGTTLFFYTD--KKSIIYVDKLDIVDLTCLTEQ 72

Query: 65  GLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVS 119
                +       ++   KE+     +   N +    W+  I  V +      VS
Sbjct: 73  NSTEKNCAK---FTLVLPKEEVQ---LKTENTESGEEWRGFILTVTELSVPQNVS 121

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 8   EGWMV-RYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG-NCRVEDRG 65
           EG +  + G   +G+      + VL + +L  Y    + + +P+ ++ + G  C    R 
Sbjct: 3   EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPD--RTDVIPLLSVNMGGEQCGGCRRA 60

Query: 66  LKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
             T   H   V  + + +       ++A +  E   W + +   + +    Q
Sbjct: 61  NTTDRPHAFQV--ILSDRPCLE---LSAESEAEMAEWMQHLCQAVSKGVIPQ 107

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS     G++ R   +   + +    +FV+++++L  Y    +D               V
Sbjct: 5   SSGSTMSGYLYR--SKGSKKPW-KHLWFVIKNKVLYTY-AASEDVA--ALESQPLLGFTV 58

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116
               +K  +     V  + +K   ++     A +      W +  +        S
Sbjct: 59  TL--VKDENSES-KVFQLLHKGMVFYV--FKADDAHSTQRWIDAFQEGTVSGPSS 108

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 8/119 (6%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFI-HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
             V+  G++ +  +      F    R+  L   +  YY      ++       IDG   V
Sbjct: 15  PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGS--DKDKQQKGEFAIDG-YDV 71

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEK-YHRITMAAFNIQEALIWKEKIELVIDQHQESQVS 119
                    G       +    ++ Y      A + ++A  W ++++ ++       + 
Sbjct: 72  RMNNTLRKDGKKDCCFEICAPDKRIYQ---FTAASPKDAEEWVQQLKFILQDLGSDVIP 127

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/129 (15%), Positives = 36/129 (27%), Gaps = 27/129 (20%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHM---RYFVLESRLLAYYKKKPQDNQVPIKTLLIDGN 58
           SS  V  GW+      K+      M   R+   +   ++YY    +        + +   
Sbjct: 5   SSGKVKSGWLD-----KLSPQGKRMFQKRWVKFDGLSISYYNN--EKEMYSKGIIPLSAI 57

Query: 59  CRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI------DQ 112
             V  +G             V   +  +          +E   W   +   +       Q
Sbjct: 58  STVRVQG--------DNKFEVVTTQRTFV---FRVEKEEERNDWISILLNALKSQSLTSQ 106

Query: 113 HQESQVSNG 121
            Q S  S+G
Sbjct: 107 SQASGPSSG 115

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS  +  GW+ +  +R I +++   RYFVL ++ L YYK +  ++  P   + + G C +
Sbjct: 5   SSGPIKMGWLKK--QRSIVKNW-QQRYFVLRAQQLYYYKDE--EDTKPQGCMYLPG-CTI 58

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRIT-----MAAFNIQEALIWKEKIELVIDQHQES 116
           ++           +V  +       +R+      + A +  E   W + +  V      S
Sbjct: 59  KEIATNPEEAGK-FVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPSS 117

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           ++ V   GW+ +     + + + + R+FVL  R L YY K  ++    + ++ +    RV
Sbjct: 19  NAPVTKAGWLFKQASSGV-KQW-NKRWFVLVDRCLFYY-KDEKEES-ILGSIPLLS-FRV 73

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH 113
                  +     +     +   + +    +A + +E   W + +       
Sbjct: 74  AAVQPSDNISR-KHTFKAEHAGVRTYF--FSAESPEEQEAWIQAMGEAARVQ 122

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 22/131 (16%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS +V   W+   G  K   S+    + VL+  +L  YK   Q N   + T+L++    +
Sbjct: 5   SSGIVMADWLKIRGTLK---SW-TKLWCVLKPGVLLIYKT--QKNGQWVGTVLLNACEII 58

Query: 62  EDRGLKTHHGHMVYVLSVYN-------KKEKYHRIT---------MAAFNIQEALIWKEK 105
           E    K      ++     +       K E    IT         + A +  +   W + 
Sbjct: 59  ERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118

Query: 106 IELVIDQHQES 116
           +EL +     S
Sbjct: 119 LELALKSGPSS 129

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 3  SKVVYEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQV--PIKTLLIDGN 58
          + V+ E   ++    ++K          F+L    L+YY+   +  +      ++ ++  
Sbjct: 1  AAVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKI 60

Query: 59 CRVE 62
            VE
Sbjct: 61 TCVE 64

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQD---NQVPIKTLLI 55
           +  +    G++               RYF+L+++   L +Y   PQ+       + +L +
Sbjct: 11  VDRQNRICGFL--DIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQL 68

Query: 56  DGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQE 115
               +V     K       +   +    ++Y    + A + ++   W E +         
Sbjct: 69  TYISKVSIATPKQKPKT-PFCFVINALSQRYF---LQANDQKDLKDWVEALNQASKSGPS 124

Query: 116 S 116
           S
Sbjct: 125 S 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	99.89
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	99.89
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	99.87
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	99.85
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	99.84
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	99.84
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	99.82
3qsz_A	189	STAR-related lipid transfer protein; structural ge	99.81
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	99.8
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.68
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.63
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.62
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.61
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.6
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.59
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.59
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.59
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.58
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.57
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.57
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.57
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.56
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.56
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.55
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.55
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.55
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.55
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.54
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.54
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.53
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.53
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.53
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.52
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.52
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.52
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.52
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.52
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.51
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.51
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.51
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.49
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.48
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.47
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.47
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.47
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.47
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.47
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.46
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.46
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.45
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.44
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.43
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.43
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.41
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.38
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.37
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.35
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.32
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.31
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.31
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.27
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.27
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.26
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.23
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.22
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.22
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.2
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.17
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.09
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	98.98
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	98.84
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.84
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	98.78
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	98.78
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.74
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	98.64
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	98.53
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.07
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.02
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	97.64
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	97.53
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.19
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	96.61
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	96.43
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	96.1
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	95.9
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	95.52
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	95.52
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	95.52
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	95.37
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	95.32
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	95.23
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	95.14
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	94.28
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	94.09
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	93.96
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	93.55
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	92.45
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	92.18
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	92.16
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	91.97
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	91.82
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	91.59
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	91.08
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	86.26
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	85.14
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	82.12

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=99.89  E-value=9.5e-23  Score=182.39  Aligned_cols=120  Identities=17%  Similarity=0.197  Sum_probs=105.5

Q ss_pred             CCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHh--hccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV--MSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       199 ~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~l--m~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ..|+++..+||++||....+.     ..++++|++|+|++||++||++|  ++++ .|.+||..+.++++||++|++++|
T Consensus        43 ~~W~~~~~~~gv~v~~~~~~~-----~~~~~~k~~~~v~~~~~~v~~~l~~~d~~-~r~~Wd~~~~~~~vle~i~~~~~i  116 (231)
T 2r55_A           43 AGWKICREGNGVSVSWRPSVE-----FPGNLYRGEGIVYGTLEEVWDCVKPAVGG-LRVKWDENVTGFEIIQSITDTLCV  116 (231)
T ss_dssp             SSCEEEECCSSEEEEEEECSS-----SSSEEEEEEEEESSCHHHHHHHHCC--CC-SHHHHCTTCSEEEEEEECSSSEEE
T ss_pred             CCCEEEEeCCCEEEEEEccCC-----CCCcEEEEEEEECCCHHHHHHHHHhhCcc-hhhhhccccceeEEEEEcCCCEEE
Confidence            679999999999999986531     24579999999999999999999  5455 699999999999999999999998


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      +| .+.+.|+++.+++||||++|+|++.+||+|+|+..||+||+++...
T Consensus       117 ~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~P~~~  164 (231)
T 2r55_A          117 SR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKP  164 (231)
T ss_dssp             EE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTSCCCT
T ss_pred             EE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCCCCCC
Confidence            55 4666777788999999999999999999999999999999998653

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=99.89  E-value=5.1e-23  Score=192.14  Aligned_cols=145  Identities=21%  Similarity=0.275  Sum_probs=119.2

Q ss_pred             CCCCCcccCcccccCccccCC--CCccccccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHh
Q 019858          170 GPPDLVHDWTRELDSDLSNQN--INNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV  247 (335)
Q Consensus       170 gp~~~~~dwt~~~~~~~~n~~--~~~dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~l  247 (335)
                      .+|-++. |+..++..+.+.+  +-.+..+.+.|++..++||++||....       +....+|+.|+|++||++||++|
T Consensus        36 ~~p~~~~-w~~~~~~~l~~~n~~al~~l~~~~gW~~~~~~~gv~Vy~~~~-------~~~l~~k~~~~v~~~~~~v~~~L  107 (258)
T 3fo5_A           36 EVPLSVP-WDPSNQVYLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLED-------DKFLSFHMEMVVHVDAAQAFLLL  107 (258)
T ss_dssp             TSCSEEE-CCGGGHHHHHHHHHHHHHHHHTCSCCEEEEEETTEEEEEEEC-------SSCEEEEEEEEESSCHHHHHHHH
T ss_pred             CCCcccc-cCcccceecccCCHHHHHhhhccCCCEEEecCCCeEEEEEEC-------CCceEEEEEEEEeCCHHHHHHHH
Confidence            3555555 9987766544333  355667789999999999999999532       22457899999999999999999


Q ss_pred             hccCCCcccccceeeeeeEEEEEeCcccEEEEEEeeCcccCcccCceeEEEEeeEec-CCCc-EEEEEeeeechhhhhhc
Q 019858          248 MSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGS-YGSMRTVVHNQDMYELT  325 (335)
Q Consensus       248 m~~d~~R~eWD~~~~~~~vVE~iD~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGs-YvIl~~Sv~H~~~~~~t  325 (335)
                      |++. .|.+||..+.+.+|||+||+| ||||+ +..+|+++.++|||||++|+||+. +||. |+|+.+||+||++|..-
T Consensus       108 ~D~~-~R~~WD~~~~~~~vle~id~~-~ivY~-~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~  184 (258)
T 3fo5_A          108 SDLR-QRPEWDKHYRSVELVQQVDED-DAIYH-VTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETP  184 (258)
T ss_dssp             HCGG-GGGGTCTTCCEEEEEEEEETT-EEEEE-EEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSCCCT
T ss_pred             hCch-hHhHhhhhccEEEEEEEcCCC-eEEEE-EecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCCCCC
Confidence            9886 599999999999999999999 89994 555555467999999999999985 4885 99999999999998654

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=99.87  E-value=4.6e-22  Score=178.45  Aligned_cols=118  Identities=14%  Similarity=0.234  Sum_probs=104.3

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL  277 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIv  277 (335)
                      ...|++....||++||.....     .+.+.++|++|+|++||++||++|++.+ .|.+||..+.+.++||++|+|++|+
T Consensus        42 ~~~W~~~~~~~gv~vy~~~~~-----~~~~~~~k~~~~v~~~~~~v~~~l~d~~-~r~~Wd~~~~~~~vle~id~~~~I~  115 (224)
T 1jss_A           42 EDEWRVAKKAKDVTVWRKPSE-----EFNGYLYKAQGVMDDVVNNVIDHIRPGP-WRLDWDRLMTSLDVLEHFEENCCVM  115 (224)
T ss_dssp             GGGCEEEEEETTEEEEEEECS-----SSSSEEEEEEEEESSCHHHHHHHHSSST-THHHHCSSEEEEEEEEECSTTEEEE
T ss_pred             CCCCEEEEECCCEEEEEEecc-----CCCceEEEEEEEEeCCHHHHHHHHhCcc-cccccccceeeEEEEEEcCCCeEEE
Confidence            567999999999999998533     1345789999999999999999999976 6999999999999999999999999


Q ss_pred             EEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhh
Q 019858          278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYE  323 (335)
Q Consensus       278 y~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~  323 (335)
                      |....+.| |+++++||||++|+|++.+|| |+|+..||+||+++.
T Consensus       116 y~~~~~~~-~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp~~~~  159 (224)
T 1jss_A          116 RYTTAGQL-LNIISPREFVDFSYTVGYEEG-LLSCGVSVEWSETRP  159 (224)
T ss_dssp             EEEECCBT-TTTBCCEEEEEEEEEEEETTE-EEEEEEECCCCCCCT
T ss_pred             EEEccccc-CCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecCCCCC
Confidence            99999754 345999999999999999887 677889999999843

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=99.85  E-value=4.5e-21  Score=171.12  Aligned_cols=119  Identities=18%  Similarity=0.258  Sum_probs=102.1

Q ss_pred             cCCcEEEE-eecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHh-hccCCCcccccceeeeeeEEEEEeCccc
Q 019858          198 RKHWRLLQ-CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV-MSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       198 ~~~W~l~~-~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~l-m~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ...|++.. .+||+.||....+      +.+.++|+.|+|++||++||+.| ++++ .|.+||..+.+.++||++|+|++
T Consensus        30 ~~gW~~~~~~~~gv~vy~~~~~------~~g~~~k~~~~v~~~~~~v~~~l~~d~~-~r~~Wd~~~~~~~vle~~~~~t~  102 (221)
T 3p0l_A           30 QEGWKKESQQDNGDKVMSKVVP------DVGKVFRLEVVVDQPMERLYEELVERME-AMGEWNPNVKEIKVLQKIGKDTF  102 (221)
T ss_dssp             CTTCEEEEECTTSCEEEEEECS------SSCEEEEEEEEESSCHHHHHHHHTTTGG-GTTTSCTTCSEEEEEEECSSSEE
T ss_pred             CCCCeEeeecCCCcEEEEEEcC------CCceEEEEEEEEcCCHHHHHHHHHhccc-hhhhcCcchheEEEEEecCCCeE
Confidence            46799995 8899999998754      23589999999999999999998 5777 59999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      |+|... +.|+++.+++||||++|+|++. +|+|+|+..||+||++|...
T Consensus       103 I~y~~~-~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P~~~  150 (221)
T 3p0l_A          103 ITHELA-AEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMPEQK  150 (221)
T ss_dssp             EEEEEE-CC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSCCCT
T ss_pred             EEEEee-ccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCCCCC
Confidence            888765 4455567999999999999996 79999999999999998753

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=99.84  E-value=6.9e-21  Score=170.43  Aligned_cols=119  Identities=15%  Similarity=0.221  Sum_probs=101.6

Q ss_pred             cCCcEEEEee-cCeEEEEEecccCCCCccCccceEEeeeeecCHHHHH-HHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          198 RKHWRLLQCQ-NGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       198 ~~~W~l~~~~-nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IF-e~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ...|++.... ||+.||+...+      +.+..+|+.|+|++||++|| +++++++ .|.+||..+.++++||++|+||+
T Consensus        41 ~~~W~~~~~~~~g~~vy~~~~~------~~g~~~k~~~~v~~~~~~v~~~~~~d~~-~r~~Wd~~~~~~~vle~~~~~t~  113 (229)
T 1em2_A           41 EENWKFEKNNEYGDTVYTIEVP------FHGKTFILKTFLPCPAELVYQEVILQPE-RMVLWNKTVTACQILQRVEDNTL  113 (229)
T ss_dssp             GGGCEEEEECTTCCEEEEEEET------TTEEEEEEEEEESSCHHHHHHHTTTCHH-HHTTTCTTEEEEEEEEEETTTEE
T ss_pred             CCCCEEEEecCCCCEEEEEecC------CCCceEEEEEEecCCHHHHHHHHHhCcc-chhhcccccceEEEEEecCCCeE
Confidence            3589999997 89999998765      23468999999999999999 6777776 69999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELT  325 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t  325 (335)
                      |+|....| .+++.+++||||++|+|++. +++|+|+.+||+||+++...
T Consensus       114 I~~~~~~p-~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P~~~  161 (229)
T 1em2_A          114 ISYDVSAG-AAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSHSAKPPTH  161 (229)
T ss_dssp             EEEEEECC-BTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCCTTSCCCT
T ss_pred             EEEEEecC-cCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccCCCCCCCC
Confidence            87765544 33456999999999999998 66799999999999998653

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=99.84  E-value=1.2e-20  Score=172.25  Aligned_cols=118  Identities=21%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ....|++....||+.||....+.    .+...++|++++|+++|++||..|+.-   |.+||..+.+.++||+||++++|
T Consensus        48 ~~~gW~~~~~~~gi~V~~k~~~~----~~~~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~~~vle~id~~~~I  120 (237)
T 2pso_A           48 KFKGWVTCSSTDNTDLAFKKVGD----GNPLKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQWKVVETLDRQTEI  120 (237)
T ss_dssp             HCCSCEEECCSSSCEEEEECCCS----SCCCCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCCCEEEEEEETTEEE
T ss_pred             CCCCCEEEecCCCeEEEEEEcCC----CCCcEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhceEEEEEEcCCCcEE
Confidence            36789999999999999986421    234468999999999999998766532   99999999999999999999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEec-CCCcEEEEEeeeechhhhhh
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYGSMRTVVHNQDMYEL  324 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGsYvIl~~Sv~H~~~~~~  324 (335)
                      +|+.+++.|   .+++||||++|+|+++ +||+|+|+..||.||++|..
T Consensus       121 ~y~~~~~p~---p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~  166 (237)
T 2pso_A          121 YQYVLNSMA---PHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLL  166 (237)
T ss_dssp             EEEEECCSS---SCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCC
T ss_pred             EEEEecCCC---CcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCC
Confidence            999999655   4899999999999985 78999999999999998865

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=99.82  E-value=1.1e-19  Score=165.31  Aligned_cols=125  Identities=15%  Similarity=0.280  Sum_probs=106.1

Q ss_pred             cccccCCcEEEEeecCeEEEEEecccCCCCccC-ccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEe
Q 019858          194 QAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSC-SRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD  271 (335)
Q Consensus       194 dv~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~-~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD  271 (335)
                      .+.+...|+++...||++||....+..    +. -+.+|++++|. ++|++||+++++++ .|.+||..+.+.+|||+||
T Consensus        42 ~~~~~~~W~~~~~~~gv~vy~~~~~~~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~-~r~~Wd~~~~~~~vle~i~  116 (255)
T 2e3n_A           42 DVGGDANWQLVVEEGEMKVYRREVEEN----GIVLDPLKATHAVKGVTGHEVCNYFWNVD-VRNDWETTIENFHVVETLA  116 (255)
T ss_dssp             CCTTCTTEEEEEEETTEEEEEECCEET----TEECCCEEEEEEEETCCHHHHHHHHHCGG-GHHHHCCSEEEEEEEEEEE
T ss_pred             hcCCCCCcEEEEeCCCEEEEEEEcCCC----CceeeeEEEEEEEcCCCHHHHHHHHhCcc-hHhhhhhhcceeEEEEEcC
Confidence            344567899999999999999875421    11 12689999886 89999999999998 6999999999999999999


Q ss_pred             CcccEEEEEEeeCcccCcccCceeEEEEeeEec----CC--CcEEEEEeeeechhhhhhcc
Q 019858          272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN----DD--GSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       272 ~HtdIvy~~~~p~wlp~~~~~RDlv~~RyWrR~----~D--GsYvIl~~Sv~H~~~~~~t~  326 (335)
                      ++++|+|..++..   +.+++||||++|+||+.    ++  ++|+|+..|++|++++.+..
T Consensus       117 ~~~~i~y~~~~~p---~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g  174 (255)
T 2e3n_A          117 DNAIIIYQTHKRV---WPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNR  174 (255)
T ss_dssp             TTEEEEEEEECCC---TTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSS
T ss_pred             CCCEEEEEEeecC---CCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCC
Confidence            9999999999954   45899999999999987    34  49999999999999887543

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=99.81  E-value=4.1e-19  Score=153.77  Aligned_cols=118  Identities=14%  Similarity=0.221  Sum_probs=103.4

Q ss_pred             cCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEE
Q 019858          198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL  277 (335)
Q Consensus       198 ~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIv  277 (335)
                      +..|++....||++||....+.     +....+|+.++|++||+++|++|++++ .|.+||..+..++|||+ +++++|+
T Consensus         2 ~~~W~~~~~~~gv~v~~~~~~~-----~~~~~~k~~~~v~~s~~~v~~~l~D~~-~~~~W~~~~~~~~vle~-~~~~~i~   74 (189)
T 3qsz_A            2 QDGWSLAKDAEGIKVYVRNVEG-----SPLREFRGEVRLKAAADDVVKVLRDAN-AFRQWMPDVAASELLKA-TDTEQYH   74 (189)
T ss_dssp             -CCCEEEEEETTEEEEEECCTT-----CSSCEEEEEEEESSCHHHHHHHHHCGG-GGGGTSTTEEEEEEEEE-CSSEEEE
T ss_pred             CCCCEEEEcCCCEEEEEEeCCC-----CCeEEEEEEEEEECCHHHHHHHHHhHH-HhhhHHHhcCEEEEEee-cCCceEE
Confidence            5689999999999999987541     234689999999999999999999998 59999999999999999 9999999


Q ss_pred             EEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       278 y~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      |..++..|   .+++||||+.|+|++..||+|+|.+.| .|+.+|....
T Consensus        75 y~~~~~p~---p~~~RD~v~~~~~~~~~~g~~~i~~~~-~~~~~P~~~~  119 (189)
T 3qsz_A           75 YLDNSAPW---PVSNRDGVYHFTYEKAGDGAITVRVEA-VPDYLPLRKG  119 (189)
T ss_dssp             EEEECCSS---SCCCEEEEEEEEEEECTTSCEEEEEEE-CTTSSCCCTT
T ss_pred             EEEeecCC---CcCCcceEEEEEEEECCCCeEEEEEEc-CCCccCCCCC
Confidence            99999554   589999999999999989998887766 7888887544

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=99.80  E-value=3e-19  Score=156.76  Aligned_cols=118  Identities=21%  Similarity=0.305  Sum_probs=101.9

Q ss_pred             ccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeee-ecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       197 ~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV-~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      +...|+++..++|++||....+.     +..+.+|++|+| ++||++||++|++++ .|.+||..+.+.+|+|. |+ ++
T Consensus        26 ~~~~W~~~~~~~~v~v~~~~~~~-----~~~~~~k~~~~i~~~~~~~v~~~l~d~~-~r~~Wd~~~~~~~vle~-~~-~~   97 (214)
T 1ln1_A           26 AGADWQLLVETSGISIYRLLDKK-----TGLYEYKVFGVLEDCSPTLLADIYMDSD-YRKQWDQYVKELYEQEC-NG-ET   97 (214)
T ss_dssp             TTTTCEEEEEETTEEEEEEEETT-----TTEEEEEEEEEETTSCHHHHHHHHHCHH-HHHHHCTTEEEEEEEEE-TT-EE
T ss_pred             CCCCcEEEEECCCeEEEEeccCC-----CCcEEEEEEEEECCCCHHHHHHHHcCHH-HHHHHHHHHhhEEEecc-CC-CE
Confidence            45689999999999999986541     334699999999 599999999999987 59999999999999998 77 88


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEec-CCCc--EEEEEeeeechhhhhhc
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGS--YGSMRTVVHNQDMYELT  325 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGs--YvIl~~Sv~H~~~~~~t  325 (335)
                      |+|.+++.+|   .+++||||+.|+|++. +||+  |+|+.+||+||+++.+.
T Consensus        98 i~~~~~~~p~---p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~  147 (214)
T 1ln1_A           98 VVYWEVKYPF---PMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERS  147 (214)
T ss_dssp             EEEEEECCCT---TSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCT
T ss_pred             EEEEEEEcCC---CCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCC
Confidence            9999999544   4799999999999975 4774  78999999999988654

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.68  E-value=2.1e-16  Score=130.12  Aligned_cols=102  Identities=11%  Similarity=0.127  Sum_probs=77.2

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCC---C----CCccEEEEecCceEEeeCCcceecCceeEE
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD---N----QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV   76 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~---~----~~Pirs~vid~~~rVed~Gre~~hg~~~yv   76 (335)
                      .+.+|||||+.|..   ...+++|||||+++.|.|||..+..   .    ..|.+++-| .+|+|+.. .+ -+.+..|+
T Consensus        11 ~~~k~G~L~K~g~~---~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L-~~~~v~~~-~~-~~~~k~~~   84 (124)
T 2w2x_D           11 EHKQQGELYMWDSI---DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDL-NTYNVVKA-PQ-GKNQKSFV   84 (124)
T ss_dssp             --CCEEEEEEEETT---TTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEG-GGEEEEEC-TT-CBTTBSEE
T ss_pred             hcceeEEEEEECCC---CCCceEeEEEEECCEEEEEcccccccccccccCCccccEEEC-CCCEEEEc-cC-CcCCCCEE
Confidence            45699999999843   5668899999999999999975421   1    134566667 67777763 22 23356689


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      |.|+....+.+.+.|+|.|.||+..||+||+.|+.
T Consensus        85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            99999877788999999999999999999999953

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.63  E-value=1.6e-15  Score=129.14  Aligned_cols=99  Identities=13%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecc----cCCCCCCCccEEEEecCceEEeeCC--cceecCceeEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK----KKPQDNQVPIKTLLIDGNCRVEDRG--LKTHHGHMVYVLS   78 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK----~~P~~~~~Pirs~vid~~~rVed~G--re~~hg~~~yvf~   78 (335)
                      .+++||||+.|.+.+  --+++|||||+++.|.|||    ++.  ..+|++.+.+ ++|+|+.-.  .+..  +.-|+|.
T Consensus         8 ~~~~G~L~KqG~~~~--K~WKrRwFVL~~~~LyYfk~~~~~~~--~~~p~G~I~L-~g~tV~~~~~~~~~~--~~k~~F~   80 (126)
T 1wi1_A            8 MKHSGYLWAIGKNVW--KRWKKRFFVLVQVSQYTFAMCSYREK--KAEPQELLQL-DGYTVDYTDPQPGLE--GGRAFFN   80 (126)
T ss_dssp             EEEEEEEEEECSSSC--CSCEEEEEEEEEEETTEEEEEECCSS--SSCCSEEEEC-SSCEEEECCCCSSCC--SCSSEEE
T ss_pred             CceeEEEEEeCCCcc--cccceEEEEEeCCEEEEEEccccccc--CCCCceEEEC-CCcEEEEecCCcccc--cCceEEE
Confidence            359999999997543  3345999999999999998    444  2489999999 567887321  1112  2347888


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      |.-.   ++++.|+|.|.||++.||+||..|+.|.
T Consensus        81 ~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~  112 (126)
T 1wi1_A           81 AVKE---GDTVIFASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             EECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred             EecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence            7743   4579999999999999999999998754

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.62  E-value=2.1e-15  Score=126.65  Aligned_cols=99  Identities=18%  Similarity=0.355  Sum_probs=76.2

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.|    +..-+++|||||+++.|.|||... + ..|++++.|. +|.|.+...    .+.-|.|.|+..
T Consensus         6 ~~v~k~GwL~K~g----~~k~WkrRWfVLk~~~L~yyk~~~-~-~~p~G~I~L~-~~~v~~~~~----~~~~~~F~i~~~   74 (130)
T 1v88_A            6 SGIVMADWLKIRG----TLKSWTKLWCVLKPGVLLIYKTQK-N-GQWVGTVLLN-ACEIIERPS----KKDGFCFKLFHP   74 (130)
T ss_dssp             SSCCEEEEEEECC----SSSSCEEEEEEEETTEEEEESCSS-S-CCCCEEEECS-SCEECCCCT----TTSSCEEEEECT
T ss_pred             CceEEEeEEEEeC----CCCCceEEEEEEECCEEEEECCCC-C-CCceEEEEcC-CCEEEECCC----CCCCeEEEEEcC
Confidence            4556999999987    233466999999999999998654 3 4899999994 555654311    234589999976


Q ss_pred             CCC---------------------cceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           83 KEK---------------------YHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        83 ~~~---------------------~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      ..+                     .+.+.|.|.|.+|+..||+||+.||..
T Consensus        75 ~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  125 (130)
T 1v88_A           75 LEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             TCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            442                     245889999999999999999999653

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.61  E-value=6.8e-15  Score=116.68  Aligned_cols=105  Identities=22%  Similarity=0.311  Sum_probs=81.3

Q ss_pred             CCCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            1 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         1 ~~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      |.+.+.+||||++.|...   .-+++|||||+++.|.|||.+ .+ ..|.+.+.|.+++.|+....   ..+..|+|.|.
T Consensus         1 me~~~~~~G~L~K~g~~~---~~Wk~R~fvL~~~~L~yy~~~-~~-~~~~g~i~L~~~~~~~~~~~---~~~~~~~F~i~   72 (113)
T 1pls_A            1 MEPKRIREGYLVKKGSVF---NTWKPMWVVLLEDGIEFYKKK-SD-NSPKGMIPLKGSTLTSPCQD---FGKRMFVFKIT   72 (113)
T ss_dssp             CCCCCSEEEEEEEESSSS---SCCEEEEEEEETTEEEEESST-TC-SSCSEEEESSSCCEESSCCS---SCCSSSEEEEE
T ss_pred             CCCCCcEEEEEEEeCCCC---CCceEEEEEEECCEEEEEeCC-CC-CCcceEEEcCCCEEEEecCC---CCCCccEEEEE
Confidence            456778999999998643   345699999999999999865 33 48999999977776652111   12456789997


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                      ..  ..+.+.|.|.|.+|+..|++||+.||.....
T Consensus        73 ~~--~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~  105 (113)
T 1pls_A           73 TT--KQQDHFFQAAFLEERDAWVRDINKAIKCIEG  105 (113)
T ss_dssp             ET--TTEEEEEECSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cC--CCCEEEEECCCHHHHHHHHHHHHHHHhccch
Confidence            64  3689999999999999999999999866533

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.60  E-value=7.2e-15  Score=117.67  Aligned_cols=101  Identities=20%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.|...-   -+++|||||+++.|.|||.. .+ ..|.+.+.|.+ |.|.....    ....++|.|...
T Consensus         3 ~~~~~~G~L~K~g~~~~---~Wk~R~fvL~~~~L~yy~~~-~~-~~~~g~i~L~~-~~v~~~~~----~~~~~~f~i~~~   72 (127)
T 1fgy_A            3 FNPDREGWLLKLGGRVK---TWKRRWFILTDNCLYYFEYT-TD-KEPRGIIPLEN-LSIREVLD----PRKPNCFELYNP   72 (127)
T ss_dssp             SSCSEEEEEEEECSSSC---CEEEEEEEEETTEEEEESST-TC-SSCSEEEECTT-CEEEEECC----SSCSSEEEEECS
T ss_pred             CCCceEeEEEEECCCCC---CeEEEEEEEECCEEEEeCCC-CC-CCcceEEECCc-eEEEEccC----CCCCceEEEecC
Confidence            56789999999986543   35699999999999999854 34 48999999955 55554321    245678999876


Q ss_pred             CCC-------------------cceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           83 KEK-------------------YHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        83 ~~~-------------------~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      ...                   .+.+.|.|.|.+|+..|++||+.||.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  122 (127)
T 1fgy_A           73 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             SSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             CccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccC
Confidence            432                   4789999999999999999999998654

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.59  E-value=1.1e-14  Score=112.89  Aligned_cols=104  Identities=18%  Similarity=0.297  Sum_probs=78.7

Q ss_pred             CCceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            4 KVVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         4 ~~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .+.++|||++.|... +...-+++|||||+++.|.|||... + ..|.+.+.|.++. |..........+.-|.|.|...
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~-~-~~~~g~i~L~~~~-v~~~~~~~~~~~~~~~F~i~~~   78 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK-S-KQPKGTFLIKGYS-VRMAPHLRRDSKKESCFELTSQ   78 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT-C-SSCSEEEECTTCE-EEECGGGCSSGGGGGEEEEECS
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCC-C-CCCCEEEEecceE-EEeCCccccccCCcceEEEEcC
Confidence            467999999999753 3335677999999999999998544 3 4899999995554 5542111122344588999853


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        ..+.+.|.|.|.+|+..|+.||+.||..
T Consensus        79 --~~r~~~l~a~s~~e~~~Wi~ai~~~i~~  106 (108)
T 1u5d_A           79 --DRRTYEFTATSPAEARDWVDQISFLLKD  106 (108)
T ss_dssp             --SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence              4588999999999999999999999764

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.59  E-value=9.5e-15  Score=121.60  Aligned_cols=101  Identities=17%  Similarity=0.318  Sum_probs=76.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCccee--cC---ceeEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTH--HG---HMVYVLS   78 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~--hg---~~~yvf~   78 (335)
                      +.++|||++.|...-++   ++|||||++++|.|||...... ..|++++.| ++|.|+....+..  .+   ..-+.|.
T Consensus         6 ~~k~G~L~Kk~~~~k~W---~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L-~~c~v~~~~~~~~~~~~~~~~~~~~F~   81 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSY---SKGYYVLTPNFLHEFKTADRKKDLVPVMSLAL-SECTVTEHSRKNSTSSPNSTGSDAKFV   81 (120)
T ss_dssp             CSEEEEEEEEETTTTEE---EEEEEEECSSEEEEESSCCTTTCCSCSEEEEG-GGEEEEEECCCCC---------CCEEE
T ss_pred             ccEEEEEEEcCCCCCCC---ccEEEEEeCCEEEEEcCCCcCcCCCceEEEEC-CCCEEEEcccccccccccccCCCcEEE
Confidence            67999999999744444   4999999999999999876432 589999999 7888877433210  00   1334566


Q ss_pred             EEecCCC----cceEEEeecCHHHHHHHHHHHHHH
Q 019858           79 VYNKKEK----YHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        79 iyn~~~~----~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |..+...    ++.+.|.|.|.+|+..|++||+.|
T Consensus        82 i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~  116 (120)
T 4a6h_A           82 LHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL  116 (120)
T ss_dssp             EEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHH
Confidence            6655432    579999999999999999999998

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=9.6e-15  Score=115.33  Aligned_cols=103  Identities=24%  Similarity=0.352  Sum_probs=80.9

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.+||||++.|..   ..-+++|||||+++.|.|||.. .+. .|.+.+.|.+.|.|+......   ..-+.|.|...
T Consensus         6 ~~~~~~G~L~K~~~~---~~~Wk~R~fvL~~~~L~yy~~~-~~~-~~~g~i~L~~~~~v~~~~~~~---~~~~~F~i~~~   77 (115)
T 2dn6_A            6 SGVLKQGYMMKKGHR---RKNWTERWFVLKPNIISYYVSE-DLK-DKKGDILLDENCCVESLPDKD---GKKCLFLVKCF   77 (115)
T ss_dssp             CSCSEEEEEEEECTT---SSCEEEEEEEECSSCEEEESST-TCS-SEEEEECCCTTCEEEEECCCT---TCCSEEEEECS
T ss_pred             CCceEEEEEEecCCC---CCCcEEeEEEEECCEEEEeCCC-CCc-ccCcEEEecCcEEEEECCCCC---CCeeEEEEEeC
Confidence            455699999999863   3446699999999999999853 344 899999998888887632211   23468888653


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                         .+.+.|.|.|.+|+..|+.||+.||..+++.
T Consensus        78 ---~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~~  108 (115)
T 2dn6_A           78 ---DKTFEISASDKKKKQEWIQAIHSTIHLLKLG  108 (115)
T ss_dssp             ---SCEEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ---CCEEEEEcCCHHHHHHHHHHHHHHHHHHhcC
Confidence               6889999999999999999999998876554

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.58  E-value=4e-15  Score=114.99  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +.++|||++.|...-|++   +|||||+++.|.||+.+......|++.+.+..+..+.+.+.       -+.|.|..   
T Consensus         1 V~k~G~L~K~g~~~k~Wk---kR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~---   67 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQ---DRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFD-------ECRFDISV---   67 (94)
T ss_dssp             CCEEEEEEEESSSTTCEE---EEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECSSC-------SSEEEEEE---
T ss_pred             CCEEEEEEEeCCCCCCce---EEEEEEECCEEEEEEecccccccceeeEecceeeeecCccc-------ceeEEEEe---
Confidence            468999999986544555   99999999999999865543467999999965555444322       24677765   


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHH
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .++.+.|.|.|.+|+..||+||++|
T Consensus        68 ~~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           68 NDSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             TTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHhh
Confidence            4688999999999999999999998

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.57  E-value=1.5e-14  Score=114.12  Aligned_cols=102  Identities=20%  Similarity=0.325  Sum_probs=77.5

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.|...-   -+++|||||+++.|.|||... + ..|.+.+.| .+|.|.+...... ...-|+|.|...
T Consensus         6 ~~~~~~G~L~K~g~~~~---~Wk~R~fvL~~~~L~yy~~~~-~-~~~~g~i~L-~~~~v~~~~~~~~-~~~~~~f~i~~~   78 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVK---NWQQRYFVLRAQQLYYYKDEE-D-TKPQGCMYL-PGCTIKEIATNPE-EAGKFVFEIIPA   78 (118)
T ss_dssp             SCEEEEEEEEEECSSSS---CEEEEEEEEETTEEEEESSSS-C-CSCSEEECS-TTEEEEEECCCSS-CCCCCEEEEEES
T ss_pred             CCCcEEEEEEecCCCCC---CccEEEEEEECCEEEEEeCCC-C-CCceEEEEC-CCCEEEEcCcCcc-cCCcceEEEECC
Confidence            34569999999986433   366999999999999998654 3 489999999 5555554221111 133689999875


Q ss_pred             C-----CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           83 K-----EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        83 ~-----~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      .     ...+.+.|.|.|.+|+..|++||+.||.
T Consensus        79 ~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           79 SWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            3     3778999999999999999999999965

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.57  E-value=2.2e-14  Score=113.30  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=74.6

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.|...   .-+++|||||+++.|.|||.+. + ..|.+++.|.+++.|... .+.   ..-++|.|.. 
T Consensus         6 ~~~~~~G~L~K~~~~~---~~Wk~RwfvL~~~~L~yyk~~~-~-~~~~~~i~L~~~~~~~~~-~~~---~~~~~F~i~~-   75 (109)
T 1wgq_A            6 SGSTMSGYLYRSKGSK---KPWKHLWFVIKNKVLYTYAASE-D-VAALESQPLLGFTVTLVK-DEN---SESKVFQLLH-   75 (109)
T ss_dssp             CSCSCEEEEEEESSTT---SCCEEEEEEEETTEEEEESCTT-C-SSCSEEEECSSEEEEECC-CSS---CSSSEEEEEE-
T ss_pred             CCCeEEEEEEeCCCCC---CCceeEEEEEeCCEEEEECCCC-c-CccCceEECCCCEEEECC-CCC---CCCcEEEEEe-
Confidence            4566999999987543   3456999999999999998543 3 489999999665555442 221   2346888875 


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                       .+.+.+.|.|.|.+|+..|+.||+.|+
T Consensus        76 -~~~~~~~~~a~s~~e~~~Wi~al~~a~  102 (109)
T 1wgq_A           76 -KGMVFYVFKADDAHSTQRWIDAFQEGT  102 (109)
T ss_dssp             -TTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -CCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence             456779999999999999999999993

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=116.99  Aligned_cols=103  Identities=22%  Similarity=0.381  Sum_probs=79.6

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV   79 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i   79 (335)
                      ++.+.+||||++.|...   .-+++|||||++  +.|.|||.+......|.+++.|.. |.|+...      ..-+.|.|
T Consensus         5 ~~~~~~~G~L~K~~~~~---~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~-~~v~~~~------~~~~~F~i   74 (120)
T 2d9x_A            5 SSGENVYGYLMKYTNLV---TGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAG-AVISPSD------EDSHTFTV   74 (120)
T ss_dssp             CSCCCCEEEEEEEEETT---TEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTT-CCEECCS------SSSSCEEE
T ss_pred             CCCCcEEEEEEecCCCC---CCceEEEEEEECCCCEEEEEecCcccCCCccceEEcce-EEEEecC------CCCCEEEE
Confidence            35667999999999533   345699999994  799999876643347999999955 5666532      12378888


Q ss_pred             EecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           80 YNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        80 yn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      ...  ..+.+.|.|.|.+|+..|++||+.||......
T Consensus        75 ~~~--~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (120)
T 2d9x_A           75 NAA--SGEQYKLRATDAKERQHWVSRLQICTQHHTEA  109 (120)
T ss_dssp             CCS--SSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcC--CCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence            753  35889999999999999999999998877554

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.56  E-value=1.1e-14  Score=113.82  Aligned_cols=94  Identities=17%  Similarity=0.284  Sum_probs=73.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCc
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY   86 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~   86 (335)
                      |||||++.|...-+   +++|||||+++.|.|||........|.+++.| .+|.|+....+      -+.|.|..  ...
T Consensus         1 ~eG~L~K~g~~~k~---Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L-~~~~v~~~~~~------~~~F~i~~--~~~   68 (103)
T 3rcp_A            1 MEGVLYKWTNYLTG---WQPRWFVLDNGILSYYDSQDDVCKGSKGSIKM-AVCEIKVHSAD------NTRMELII--PGE   68 (103)
T ss_dssp             CEEEEEEECCTTTC---EEEEEEEEETTEEEEESSCC---CCCSCEEEG-GGCEEECCTTC------SSEEEEEE--TTT
T ss_pred             CceEEEEccCCCCC---eeceEEEEECCEEEEEecCCcccCCcccEEEe-eeeEEEEcCCC------CceEEEEe--CCC
Confidence            79999999965444   45999999999999998665323479999999 57777653221      34677775  457


Q ss_pred             ceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           87 HRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        87 ~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      +.+.|.|.|.+|+..|++||+.|+..
T Consensus        69 r~~~l~a~s~~e~~~Wi~al~~a~~~   94 (103)
T 3rcp_A           69 QHFYMKAVNAAERQRWLVALGSSKAS   94 (103)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999543

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.56  E-value=1.4e-14  Score=115.46  Aligned_cols=97  Identities=14%  Similarity=0.275  Sum_probs=78.3

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      .+.+.++|||++.|..  +..-+++|||||+++.|.|||.+. + ..|.+.+.|...+.|+..+        -+.|.|. 
T Consensus         5 ~~~~~~~G~L~K~~~~--~~~~WkkR~fvL~~~~L~yy~~~~-~-~~~~g~i~l~~~~~v~~~~--------~~~F~i~-   71 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQ--GKRMFQKRWVKFDGLSISYYNNEK-E-MYSKGIIPLSAISTVRVQG--------DNKFEVV-   71 (115)
T ss_dssp             CSCCCEEEEEEECCSS--SSSCCEEEEEEECSSEEEEEESSC-C-SSCCCEEETTTEEEEEEET--------TTEEEEE-
T ss_pred             CCCccEEEEEEEcCCC--CCCCCceEEEEEECCEEEEEcCCC-C-cccCCEEECCcceEEEeCC--------CCEEEEE-
Confidence            3456799999998852  233467999999999999998654 3 3799999998877888754        3678887 


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                        ...+.+.|.|.|.+|+..|++||+.||..+
T Consensus        72 --~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~  101 (115)
T 2cod_A           72 --TTQRTFVFRVEKEEERNDWISILLNALKSQ  101 (115)
T ss_dssp             --ESSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             --eCCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence              347889999999999999999999997544

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.55  E-value=1.8e-14  Score=120.05  Aligned_cols=106  Identities=15%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCceeeeEEEeeecc---cccccceeeEEEEecc-----eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCcee
Q 019858            3 SKVVYEGWMVRYGRRK---IGRSFIHMRYFVLESR-----LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMV   74 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~---~g~q~~~~RyFVL~g~-----~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~   74 (335)
                      ..+.++|||++.|.+.   .+..-+++|||||+++     .|.|||..+.+. .|.+++.|..+..|... .    ...-
T Consensus        16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~-~~~g~I~L~~~~~~~~~-~----~~~~   89 (150)
T 1wg7_A           16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK-EPKGSIFLDSCMGVVQN-N----KVRR   89 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSS-CCSEEECTTTCCEECCC-C----SSCT
T ss_pred             CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCC-CcCcEEecccCEEEecC-C----CCCc
Confidence            3466999999998654   2445667999999997     999999877554 89999999665554421 1    2345


Q ss_pred             EEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           75 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        75 yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      |+|.|....  .+.+.|.|.|.+|+..|+.||+.||.+..+.
T Consensus        90 ~~F~i~~~~--~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~~  129 (150)
T 1wg7_A           90 FAFELKMQD--KSSYLLAADSEVEMEEWITILNKILQLNFEA  129 (150)
T ss_dssp             TEEEEECSS--SCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCC--CcEEEEEeCCHHHHHHHHHHHHHHHHhhhHH
Confidence            789998752  4899999999999999999999999865443

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.5e-14  Score=114.27  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=75.0

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +.++|||++.|.+.  ..-+++|||||+++.|.|||... + ..|.+.+.|.++ .|...+.+... ..-|+|.|..  .
T Consensus        22 ~~~~G~L~K~~~~~--~~~Wk~R~fvL~~~~L~yy~~~~-~-~~~~g~i~L~~~-~v~~~~~~~~~-~~~~~F~i~~--~   93 (122)
T 2yry_A           22 VTKAGWLFKQASSG--VKQWNKRWFVLVDRCLFYYKDEK-E-ESILGSIPLLSF-RVAAVQPSDNI-SRKHTFKAEH--A   93 (122)
T ss_dssp             EEEEEEEEEECCSS--SCCEEEEEEEEETTEEEEESSTT-C-CSCCEEEESTTC-CCEECCTTCSC-SSSSEEEEEC--S
T ss_pred             ccEEEEEEEECCCC--CCCcEEEEEEEeCCEEEEECCCC-C-CCcccEEEcCCC-EEEEcCccccC-CcccEEEEec--C
Confidence            45999999998432  34577999999999999997553 3 389999999554 46553322211 2347888864  3


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      ..+.+.|.|.|.+|+..|+.||+.|+.
T Consensus        94 ~~r~~~l~a~s~~e~~~Wi~al~~a~~  120 (122)
T 2yry_A           94 GVRTYFFSAESPEEQEAWIQAMGEAAR  120 (122)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999964

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.55  E-value=3.8e-14  Score=114.34  Aligned_cols=100  Identities=20%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.|..   ..-+++|||||+++.|.|||... + ..|.+.+.|.++..|+...    ..+..|+|.|.. 
T Consensus        16 ~~~~~~G~L~K~g~~---~~~Wk~R~fvL~~~~L~yy~~~~-~-~~~~g~i~L~~~~~v~~~~----~~~~~~~F~i~~-   85 (126)
T 1fao_A           16 SLGTKEGYLTKQGGL---VKTWKTRWFTLHRNELKYFKDQM-S-PEPIRILDLTECSAVQFDY----SQERVNCFCLVF-   85 (126)
T ss_dssp             CTTCEEEEEEEECSS---SCCEEEEEEEEETTEEEEESSTT-C-SSCSEEEEGGGCCEEEEEC----SSSSSSEEEEEE-
T ss_pred             CCccEEEEEEEcCCC---CCCcccEEEEEECCEEEEeCCCC-C-CCceeEEEccceEEEEecc----cCCCCCEEEEEe-
Confidence            456699999999853   34467999999999999998543 4 4899999997777676521    123457889886 


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                        ..+.+.|.|.|.+|+..|+.||+.||.+.+
T Consensus        86 --~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  115 (126)
T 1fao_A           86 --PFRTFYLCAKTGVEADEWIKILRWKLSQIR  115 (126)
T ss_dssp             --TTEEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred             --CCcEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence              478999999999999999999999987743

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.55  E-value=8.5e-15  Score=119.08  Aligned_cols=107  Identities=16%  Similarity=0.257  Sum_probs=77.3

Q ss_pred             CCCCceeeeEEEe--eecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceE--EeeCCcceecCceeEE
Q 019858            2 SSKVVYEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYV   76 (335)
Q Consensus         2 ~~~~~~EGWly~~--g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~r--Ved~Gre~~hg~~~yv   76 (335)
                      .+.+.++|||++.  |.   +..-+++|||||+++.|.|||...... ..|++++.|.++..  |+...++..  ...|.
T Consensus         2 ~~~v~~~G~L~K~~~~~---~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~--~~~~~   76 (134)
T 2y7b_A            2 NSSVEERGFLTIFEDVS---GFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFC--ARRNT   76 (134)
T ss_dssp             CCCCCEEEEEEEEEEET---TEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTC--CCTTE
T ss_pred             CCCceEEeeEEEEcCCC---CCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhc--cCCCE
Confidence            3678899999998  43   344567999999999999998543222 58999999955432  555333211  23467


Q ss_pred             EEEEecCCC-----------------cceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           77 LSVYNKKEK-----------------YHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        77 f~iyn~~~~-----------------~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      |.|+...++                 .+.+.|.|.|.+|+..||+||+.||...
T Consensus        77 F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~  130 (134)
T 2y7b_A           77 FELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDI  130 (134)
T ss_dssp             EEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            888763111                 2479999999999999999999998654

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.54  E-value=2e-14  Score=114.00  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.++|||++.     +..-+++|||||+++.|.|||.+.. ...|...+.+ .+|.|+.. .+   ...-|+|.|...
T Consensus         6 ~~~~~~G~L~K~-----~~k~Wk~RwfvL~~~~L~yyk~~~~-~~~~~~~i~l-~~~~v~~~-~~---~~~~~~F~i~~~   74 (107)
T 2cof_A            6 SGLETSSYLNVL-----VNSQWKSRWCSVRDNHLHFYQDRNR-SKVAQQPLSL-VGCEVVPD-PS---PDHLYSFRILHK   74 (107)
T ss_dssp             CCCTTCCEEEEE-----ETTEEEEEEEEECSSCEEEECSSTT-CSEEEEEECT-TTCEEECC-CB---TTBSCEEEEEET
T ss_pred             CCCcEeEEEEEe-----cCCCcceEEEEEECCEEEEEeCCcc-cCCCeeEEec-cceEEEEC-CC---CCCCeEEEEEeC
Confidence            456699999997     3455679999999999999987764 3355555555 56666642 11   245689999873


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                        +.+.+.|.|.|.+|+..||+||+.|++
T Consensus        75 --~~r~~~l~A~s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           75 --GEELAKLEAKSSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             --TEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             --CCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence              478899999999999999999999943

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.54  E-value=4.2e-14  Score=110.65  Aligned_cols=100  Identities=17%  Similarity=0.368  Sum_probs=73.9

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCcce--ecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf~   78 (335)
                      ..+.++|||++.|...-+   +++|||||+++  .|.|||.. .+ ..|.+++.|.+ |.|.......  ...+..++|.
T Consensus         5 ~~~~~~G~L~K~g~~~~~---Wk~R~fvL~~~~~~L~yyk~~-~~-~~~~g~i~L~~-~~v~~~~~~~~~~~~~~~~~F~   78 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKN---WKVRKFILREDPAYLHYYDPA-GA-EDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFE   78 (109)
T ss_dssp             CCEEEEEEEEEECTTTCC---EEEEEEEEETTTTEEEEECTT-SC-SSCSEEEECTT-CEEEEECC--------CCSEEE
T ss_pred             CceeEEEEEEEcCCCCCC---ceEEEEEEeCCCcEEEEECCC-CC-CCccEEEECCC-CEEEEccCCcccccCCCceEEE
Confidence            456799999999864333   56999999987  99999754 33 48999999955 6665422110  0113567899


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |...  ..+.+.|.|.|.+|+..|+.||+.||
T Consensus        79 i~~~--~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           79 IITA--DEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             EECT--TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEeC--CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            9864  34669999999999999999999996

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.53  E-value=2.9e-14  Score=118.98  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=75.4

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEe---cceeeecccC---CCCCCCccEEEEecCceEEeeCCcceecCceeEEEE
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE---SRLLAYYKKK---PQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS   78 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~---g~~l~~YK~~---P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~   78 (335)
                      ..++|||++.|...  ..-+++|||||+   |++|.|||+.   +.+ ..|++++.|+.++.|++.--+. ..+.-|.|.
T Consensus        15 ~~~~G~L~K~g~~~--~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~-~~~~G~I~L~~~~~V~~~~~~~-~~~~~~~F~   90 (126)
T 1v5p_A           15 NRICGFLDIEDNEN--SGKFLRRYFILDTQANCLLWYMDNPQNLAVG-AGAVGSLQLTYISKVSIATPKQ-KPKTPFCFV   90 (126)
T ss_dssp             CCEECCEEEECTTC--SSCEEEEEEEEETTTTEEEEESSCTTTSCTT-CCCSEEEETTTCCEEEECCTTT-SCSCSSEEE
T ss_pred             CceEEEEEEeCCCC--CCCccceEEEEecCCCCEEEEECCCCCCCCC-ceeeEEEECCCccEEecCCccc-CCCCCEEEE
Confidence            44899999998432  345669999999   8888877653   333 5999999998878998743111 112346776


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      |.   ...+.+.|.|.|.+|+..||+||..|++
T Consensus        91 i~---t~~r~y~l~A~s~~e~~~Wi~al~~a~~  120 (126)
T 1v5p_A           91 IN---ALSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             EE---CSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             EE---CCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            64   4578999999999999999999999943

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.53  E-value=4.1e-14  Score=113.92  Aligned_cols=99  Identities=16%  Similarity=0.287  Sum_probs=76.3

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .+.++|||++.|...  ..-+++|||||+++.|.|||... +. .|.+.+.| .+|.|+....+.. ...-|+|.|... 
T Consensus        20 ~~~~~G~L~K~~~~~--~~~Wk~R~fvL~~~~L~yy~~~~-~~-~~~g~i~L-~~~~v~~~~~~~~-~~~~~~F~i~~~-   92 (128)
T 2dkp_A           20 PVVRRGWLYKQDSTG--MKLWKKRWFVLSDLCLFYYRDEK-EE-GILGSILL-PSFQIALLTSEDH-INRKYAFKAAHP-   92 (128)
T ss_dssp             CCCEEEEEEEECCSS--SCCEEEEEEEEETTEEEEESSTT-CC-SEEEEECG-GGSEEEECCGGGC-CSSCSEEEEECS-
T ss_pred             CcEEEEEEEEeCCCC--CCCceeEEEEEeCCEEEEECCCC-Cc-ccceEEEc-CceEEEEcCCccc-CCCCeEEEEEcC-
Confidence            345999999998632  34467999999999999998543 33 89999999 5677776433322 234578999864 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                       ..+.+.|.|.|.+|+..|++||+.|+
T Consensus        93 -~~r~~~l~a~s~~e~~~Wi~al~~a~  118 (128)
T 2dkp_A           93 -NMRTYYFCTDTGKEMELWMKAMLDAA  118 (128)
T ss_dssp             -SSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence             35789999999999999999999994

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.53  E-value=3.3e-14  Score=114.81  Aligned_cols=105  Identities=21%  Similarity=0.374  Sum_probs=77.9

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecc-eeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~   78 (335)
                      +.+.++|||++.|...   .-+++|||||+++ .|.|||.++...   ..||....+- .|.|...  +   ...-+.|.
T Consensus         6 ~~~~~~G~L~K~g~~~---k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~-~~~~~~~--~---~~~~~~F~   76 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYI---KTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVA-QCQLMKT--E---RPRPNTFI   76 (125)
T ss_dssp             GCEEEEEEEEEECSSS---CCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECT-TCEEEEE--C---SSSTTEEE
T ss_pred             CCeeEEeeEEeccCCc---cCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEE-eeeeccc--c---cCCCCEEE
Confidence            3456999999998643   4456999999975 999999877543   5788888773 3443321  0   12346888


Q ss_pred             EEecC-CCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           79 VYNKK-EKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        79 iyn~~-~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      |.... ...+.+.|.|.|.+|+..|+.||+.|+.+.++.
T Consensus        77 I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  115 (125)
T 1unq_A           77 IRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ  115 (125)
T ss_dssp             EEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcccc
Confidence            87643 456789999999999999999999998877554

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=6.9e-14  Score=110.71  Aligned_cols=101  Identities=17%  Similarity=0.232  Sum_probs=74.9

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .+.++|||++.|.+.  ..-+++|||||+++.|.|||.. .+ ..|.+.+.|.+ |.|.....+. ....-|+|.|..  
T Consensus        10 ~~~~~G~L~K~~~~~--~~~Wk~R~fvL~~~~L~yy~~~-~~-~~~~g~i~L~~-~~v~~~~~~~-~~~~~~~F~i~~--   81 (117)
T 2d9y_A           10 PVTKAGWLFKQASSG--VKQWNKRWFVLVDRCLFYYKDE-KE-ESILGSIPLLS-FRVAAVQPSD-NISRKHTFKAEH--   81 (117)
T ss_dssp             CCCEEEEEEEECTTS--SSCEEEEEEEEETTEEEEESST-TC-CSCCEEEECSS-CEEEECCTTT-TCCCSSEEEEEC--
T ss_pred             CeeEEEEEEEeCCCC--CCCceEEEEEECCCEEEEECCC-CC-CCcCCEEEeCC-eEEEEcCccc-cCCCccEEEEEc--
Confidence            345999999998432  3456799999999999999854 33 48999999955 4455432211 123347888864  


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      ...+.+.|.|.|.+|+..|+.||+.|+..
T Consensus        82 ~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  110 (117)
T 2d9y_A           82 AGVRTYFFSAESPEEQEAWIQAMGEAARV  110 (117)
T ss_dssp             SSSCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence            35688999999999999999999999643

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.52  E-value=5.6e-14  Score=112.42  Aligned_cols=103  Identities=17%  Similarity=0.277  Sum_probs=79.6

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      ..+.++|||++.|...   .-+++|||||+++.|.|||... + ..|.+.+.|.+...|+....+. ....-++|.|.. 
T Consensus        12 ~~~~~~G~L~K~g~~~---~~Wk~R~fvL~~~~L~yy~~~~-~-~~~~g~i~l~~~~~v~~~~~~~-~~~~~~~F~i~~-   84 (125)
T 1eaz_A           12 SAVIKAGYCVKQGAVM---KNWKRRYFQLDENTIGYFKSEL-E-KEPLRVIPLKEVHKVQECKQSD-IMMRDNLFEIVT-   84 (125)
T ss_dssp             CCCSEEEEEEEECTTT---CCEEEEEEEECSSEEEEESSTT-C-SSCSEEEEGGGCCEEEECTTHH-HHTCSSEEEEEC-
T ss_pred             CCccEEEEEEEeCCCC---CCcceEEEEEeCCEEEEEcCCC-C-CcceeEEEcccceEEeeccccc-cCCcCCEEEEEe-
Confidence            3456999999998533   3466999999999999998653 3 4899999998887787632111 123357888884 


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                        ..+.+.|.|.|.+|+..|+.||+.||...+
T Consensus        85 --~~r~~~l~a~s~~e~~~W~~al~~~i~~~~  114 (125)
T 1eaz_A           85 --TSRTFYVQADSPEEMHSWIKAVSGAIVAQR  114 (125)
T ss_dssp             --SSCEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred             --CCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence              468899999999999999999999986543

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=8.2e-14  Score=112.79  Aligned_cols=101  Identities=16%  Similarity=0.241  Sum_probs=78.3

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      .++.++|||++.|.... ..-+++|||||+++  .|.|||... +. .|.+++-|.+.+.|.+..      ..-+.|.|.
T Consensus         6 ~~~~~~G~L~K~g~~~~-~k~WkkRwfvL~~~~~~L~Yy~~~~-~~-~~~g~I~L~~~~~~~~~~------~~~~~F~i~   76 (119)
T 2dhk_A            6 SGKKLCGYLSKFGGKGP-IRGWKSRWFFYDERKCQLYYSRTAQ-DA-NPLDSIDLSSAVFDCKAD------AEEGIFEIK   76 (119)
T ss_dssp             SCCCCEEEEEECSCSSS-SCCCEEEEEEEETTTTEEEEESSTT-CC-SCSEEEEGGGCEEEECTT------GGGCEEEEE
T ss_pred             CCCcEEEEEEecCCCCC-CCCceeEEEEEECCccEEEEECCCC-Cc-ccccEEECCCCEEEecCC------CCCCEEEEE
Confidence            45569999999985211 23456999999999  999997553 33 899999997777776521      223588887


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                      ..   .+.+.|.|.|.+|+..||+||+.|+.+...
T Consensus        77 ~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  108 (119)
T 2dhk_A           77 TP---SRVITLKAATKQAMLYWLQQLQMKRWEFHN  108 (119)
T ss_dssp             CS---SCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eC---CcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            64   789999999999999999999999765433

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.52  E-value=6.2e-14  Score=113.53  Aligned_cols=102  Identities=17%  Similarity=0.359  Sum_probs=76.0

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCcce--ecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf~   78 (335)
                      ..+.++|||++.|...-+   +++|||||+++  .|.|||.. .+ ..|.+++.|.+ |.|+......  ...+.-++|.
T Consensus        16 ~~~~~~G~L~K~g~~~~~---Wk~R~fvL~~~~~~L~yy~~~-~~-~~~~g~i~L~~-~~v~~~~~~~~~~~~~~~~~F~   89 (129)
T 1x05_A           16 GVIIKQGCLLKQGHRRKN---WKVRKFILREDPAYLHYYDPA-GA-EDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFE   89 (129)
T ss_dssp             SEEEEEEEEEECCSSCCC---CEEEEEEEEETTTEEEEECSS-CC-SSCSEEEECTT-CEEEECCCCCCSSSCSSCSEEE
T ss_pred             CCceEEEEEEecCCCCCC---CeeEEEEEeCCCCEEEEECCC-CC-CcceeEEEccC-CEEEEccCCccccccCCCeEEE
Confidence            345699999999864333   56999999987  89999754 33 48999999955 6666432221  0123567899


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      |...  ..+.+.|.|.|.+|+..|++||+.||..
T Consensus        90 i~~~--~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           90 IITA--DEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             EECT--TCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             EEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            9864  3466999999999999999999999654

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.52  E-value=9e-14  Score=118.38  Aligned_cols=98  Identities=21%  Similarity=0.377  Sum_probs=77.3

Q ss_pred             CCceeeeEEEe--eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            4 KVVYEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         4 ~~~~EGWly~~--g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      ++..+|||++.  |.-+-|+.   +|||||.++.|+|||... + .+|.+.+.| +|+.|.+..-...  .--|.|.||+
T Consensus        11 ~VirkGWL~k~~~g~~k~~wk---~rWFVLt~~~L~yyKd~~-e-ke~~G~IpL-~~~~vr~v~~~~~--~rk~~F~l~~   82 (125)
T 1dyn_A           11 LVIRKGWLTINNIGIMKGGSK---EYWFVLTAENLSWYKDDE-E-KEKKYMLSV-DNLKLRDVEKGFM--SSKHIFALFN   82 (125)
T ss_dssp             CEEEEEEEEESCCCGGGTSSE---EEEEEEESSEEEEESSTT-C-SCEEEEEEC-TTEEEEECCSCSS--SSCEEEEEEE
T ss_pred             ceEEEEEEEEecCccccCCce---eeEEEEeccceeeecCCc-c-cccceEEEC-CCceEeccCCCCC--CCceEEEEEC
Confidence            36899999996  33333455   999999999999998766 3 489999999 7777777432222  3569999999


Q ss_pred             cCC-----CcceEEEeecCHHHHHHHHHHHHHH
Q 019858           82 KKE-----KYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        82 ~~~-----~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      ...     +.++++|+|.|.||++.||.||..|
T Consensus        83 ~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra  115 (125)
T 1dyn_A           83 TEQRNVYKDYRQLELACETQEEVDSWKASFLRA  115 (125)
T ss_dssp             TTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence            642     3579999999999999999999888

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.51  E-value=9.1e-14  Score=111.17  Aligned_cols=100  Identities=16%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      ++.++|||++.|.+.  ..-+++|||||+++.|.|||... + ..|.+.+.| .+|.|+...... ..+.-|+|.|... 
T Consensus        10 ~~~~~G~L~K~~~~~--~~~WkkR~fvL~~~~L~yy~~~~-~-~~~~g~i~l-~~~~v~~~~~~~-~~~~~~~f~i~~~-   82 (123)
T 1upq_A           10 PVHIRGWLHKQDSSG--LRLWKRRWFVLSGHCLFYYKDSR-E-ESVLGSVLL-PSYNIRPDGPGA-PRGRRFTFTAEHP-   82 (123)
T ss_dssp             CEEEEEEEEEECSSS--SCCEEEEEEEEETTEEEEESSTT-C-CSCCEEEEG-GGCEEEECCSSC-TTSSSSEEEEECT-
T ss_pred             CceEEEEEEeeCCCC--CCCceeEEEEEeCCEEEEECCCC-C-cccceEEEC-CCCEEEECCCCc-cCCCcEEEEEECC-
Confidence            345999999998533  34577999999999999998544 3 389999998 556777653322 1234678888753 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                       ..+.+.|.|.|.+|+..|+.||+.|+.
T Consensus        83 -~~r~~~l~a~s~~e~~~Wi~al~~a~~  109 (123)
T 1upq_A           83 -GMRTYVLAADTLEDLRGWLRALGRASR  109 (123)
T ss_dssp             -TSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             -CCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence             458899999999999999999999964

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.51  E-value=8.7e-14  Score=116.14  Aligned_cols=107  Identities=14%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             CCceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            4 KVVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         4 ~~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .+.++|||++.|... +...-+++|||||+++.|.|||... + ..|.+.+.|.+++ |....-....++.-|+|.|...
T Consensus        16 ~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~-~-~~~~g~i~L~~~~-v~~~~~~~~~~~~~~~F~I~~~   92 (148)
T 1u5f_A           16 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK-D-KQQKGEFAIDGYD-VRMNNTLRKDGKKDCCFEICAP   92 (148)
T ss_dssp             SEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT-C-SSCSEEEECTTCE-EEECTTSCSSTTGGGEEEEECT
T ss_pred             CccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCC-C-cccceEEEcCCcE-EEECCCcccCCCCccEEEEECC
Confidence            345999999998653 2345678999999999999997543 3 4899999995555 5432111112233478999863


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                        ..+.+.|.|.|.+|+..|++||+.||...+.
T Consensus        93 --~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  123 (148)
T 1u5f_A           93 --DKRIYQFTAASPKDAEEWVQQLKFILQDLGS  123 (148)
T ss_dssp             --TSCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred             --CCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence              3589999999999999999999999765433

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.51  E-value=3e-14  Score=112.81  Aligned_cols=101  Identities=20%  Similarity=0.261  Sum_probs=76.9

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEe--cceeeecccCCCCCCCccEEEEecCceEEeeC----CcceecCceeEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR----GLKTHHGHMVYV   76 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~--g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~----Gre~~hg~~~yv   76 (335)
                      +.+.++|||++.|...   .-+++|||||+  ++.|.|||... + ..|.+.+.|..++.|+..    |+.. ....-|+
T Consensus         6 ~~~~~~G~L~K~g~~~---~~Wk~R~fvL~~~~~~L~yy~~~~-~-~~~~g~i~L~~~~~v~~~~~~~~~~~-~~~~~~~   79 (117)
T 1v5u_A            6 SGRSYEGILYKKGAFM---KPWKARWFVLDKTKHQLRYYDHRM-D-TECKGVIDLAEVEAVAPGTPTIGAPK-TVDEKAF   79 (117)
T ss_dssp             CSSSEEEEEEECCCSS---SCCEEEEEEEETTTTEEEEESSSS-C-SSCCCEEEGGGEEEEECCCCCTTSCS-SSCTTTC
T ss_pred             CCccEEEEEEecCCCC---CCceeeEEEEECCCCEEEEeecCC-C-CccceEEEccCcEEEeecCccccccc-cCCCCeE
Confidence            4566999999998653   44669999999  88999998543 3 379999999877777642    2211 1122367


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      |.|..   ..+.+.|.|.|.+|+..|++||+.||.+
T Consensus        80 F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~  112 (117)
T 1v5u_A           80 FDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             EEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred             EEEEC---CCceEEEECCCHHHHHHHHHHHHHHhcc
Confidence            88854   5789999999999999999999999643

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.49  E-value=1.9e-13  Score=117.91  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CCCCceeeeEEEeeecc--cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcc--eecCceeEEE
Q 019858            2 SSKVVYEGWMVRYGRRK--IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLK--THHGHMVYVL   77 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~--~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre--~~hg~~~yvf   77 (335)
                      ...+.+||||++.|.++  ++..-+++|||||+++.|.|||.+... ..|.+++.|...+.|+....+  ...-..-+.|
T Consensus        12 ~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~-~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f   90 (164)
T 2lul_A           12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEK-KYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPF   90 (164)
T ss_dssp             CSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSS-CCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEE
T ss_pred             CCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcc-cccccEEEEeeeEEEEeccccccCcccccceeE
Confidence            34566999999998764  455567899999999999999865433 478889999777777653222  1122455788


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .|...   .+.+-|.|.|.+|+..||+||+++|...
T Consensus        91 ~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n  123 (164)
T 2lul_A           91 QVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNN  123 (164)
T ss_dssp             EEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             EEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence            88754   5789999999999999999999997653

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=109.07  Aligned_cols=97  Identities=10%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .+.++|||++.|..  ...-+++|||||+++.|.|||.+.   ..|.+.+++ -+|.|+..-      ..-++|.|..  
T Consensus         9 ~~~~~G~L~K~~~~--~~k~WkkR~fvL~~~~L~yyk~~~---~~~~~~i~l-~~~~v~~~~------~~~~~F~I~~--   74 (114)
T 2da0_A            9 GSEKKGYLLKKSDG--IRKVWQRRKCSVKNGILTISHATS---NRQPAKLNL-LTCQVKPNA------EDKKSFDLIS--   74 (114)
T ss_dssp             CSCEEEEEEEECSS--SCCCEEEEEEEEETTEEEECCSSC---CSCCEEEET-TTSEEEECS------SSSSCEEEEE--
T ss_pred             CccEEEEEEEeCCC--CCCCceeEEEEEeCCEEEEEcCCC---CCCCCEEEe-eeeEEEECC------CCCCEEEEEc--
Confidence            45699999999953  124567999999999999998743   256666555 455565321      1125888884  


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                       ..+.+.|.|.|.+|+..|+.||+.||.+...
T Consensus        75 -~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  105 (114)
T 2da0_A           75 -HNRTYHFQAEDEQDYVAWISVLTNSKEEALT  105 (114)
T ss_dssp             -TTEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCcEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence             4789999999999999999999999876543

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.47  E-value=9.2e-14  Score=112.27  Aligned_cols=102  Identities=23%  Similarity=0.347  Sum_probs=74.2

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEe--cceeeecccCCCCCCCccEEEEecCceEEeeCCcc--e---ecCceeEE
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLK--T---HHGHMVYV   76 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~--g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre--~---~hg~~~yv   76 (335)
                      .+.++|||++.|..   ..-+++|||||+  +..|.|||....+. .|.+.+.|.+ |.|......  .   .....-|+
T Consensus        17 ~~~~~G~L~K~g~~---~~~Wk~R~fvL~~d~~~L~yy~~~~~~~-~~~g~i~L~~-~~v~~~~~~~~p~~~~~~~~~~~   91 (129)
T 1x1g_A           17 TVVKQGYLAKQGHK---RKNWKVRRFVLRKDPAFLHYYDPSKEEN-RPVGGFSLRG-SLVSALEDNGVPTGVKGNVQGNL   91 (129)
T ss_dssp             EEEEEEEEEEECSS---SSSEEEEEEEEEESSCEEEEECSSSCCS-SCSCCEESTT-CCCEECCSSSSCSSCSSCCCSSC
T ss_pred             CEEEEEEEEEECCC---CCCeeeEEEEEeCCCCeEEEeCCCCcCC-ccceEEECcC-CEEEEeCCCCCcccccCCCCCce
Confidence            45599999999865   444569999999  46999888653444 8999999955 555432111  0   00013578


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      |.|...  ..+.+.|.|.|.+|+..|++||+.||.+
T Consensus        92 F~I~~~--~~r~~~l~a~s~~e~~~Wi~al~~~~~~  125 (129)
T 1x1g_A           92 FKVITK--DDTHYYIQASSKAERAEWIEAIKKLTSG  125 (129)
T ss_dssp             EEECCT--TCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred             EEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            888754  3467999999999999999999999654

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.47  E-value=2e-13  Score=117.73  Aligned_cols=98  Identities=12%  Similarity=0.144  Sum_probs=75.7

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      ++.+||||++.|..   ..-+++|||||+|+.|.|||++. +. .|.+.+.|..++.|.+...+   .+.-+.|+|..  
T Consensus        17 pv~keG~L~Kkg~~---~k~WkrRWFvLk~~~L~Yyk~~~-d~-~~~g~I~L~~~~~~~~~~~~---~~~~~~F~I~t--   86 (149)
T 1x1f_A           17 PLYFEGFLLIKRSG---YREYEHYWTELRGTTLFFYTDKK-SI-IYVDKLDIVDLTCLTEQNST---EKNCAKFTLVL--   86 (149)
T ss_dssp             CEEEEEEEEEECTT---CCSCEEEEEEEETTEEEEESCSS-CS-SCSEECCCSSCCEEEECCCT---TSCCCEEEEEC--
T ss_pred             CccEEEEEEEeCCC---CCCceeEEEEEcCCEEEEEeCCC-cc-ccCcEEECCCceEEeeccCC---CCcCcEEEEEc--
Confidence            35699999999953   35677999999999999998653 33 78899999777777442111   11247888875  


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       ..+.+.|.|.|.||+..||+||+.++..
T Consensus        87 -~~r~~~f~A~s~ee~~eWi~aI~~v~~~  114 (149)
T 1x1f_A           87 -PKEEVQLKTENTESGEEWRGFILTVTEL  114 (149)
T ss_dssp             -SSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             -CCCEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence             3578999999999999999999999653

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.47  E-value=3.6e-13  Score=111.69  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=75.8

Q ss_pred             CCCceeeeEEEe----eecccccccceeeEEEEecceeeecccCCC---------CCCCccEEEEecCceEEeeCCccee
Q 019858            3 SKVVYEGWMVRY----GRRKIGRSFIHMRYFVLESRLLAYYKKKPQ---------DNQVPIKTLLIDGNCRVEDRGLKTH   69 (335)
Q Consensus         3 ~~~~~EGWly~~----g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~---------~~~~Pirs~vid~~~rVed~Gre~~   69 (335)
                      ..+.+||||++.    |-.++. .-+++|||||+|+.|.|||+...         ....|.+.+-| .+|.|+.-..++ 
T Consensus        10 ~~~~k~G~L~kk~~~~~G~~~~-k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L-~~~~v~~~~~~~-   86 (129)
T 2p0d_A           10 HEVEKSGLLNMTKIAQGGRKLR-KNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL-RGAALAHGRHLS-   86 (129)
T ss_dssp             CSEEEEEEEEEEEEEETTEECC-CCCEEEEEEEESSEEEEESCC--------------CCSEEEEC-TTCEEEECTTSC-
T ss_pred             cceeEEEEEEEeeeccCCCcCC-CCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEe-CCcEEEECCCCC-
Confidence            455699999996    223332 55779999999999999997731         12489999999 566776421111 


Q ss_pred             cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                        .--++|+|..  ...+.+-|.|.|.+|+..|++||+.||.++
T Consensus        87 --kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~  126 (129)
T 2p0d_A           87 --SRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL  126 (129)
T ss_dssp             --SSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence              2346888863  445778999999999999999999998764

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.47  E-value=2.2e-13  Score=118.69  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             CCceeeeEEEeeecc--cccccceeeEEEEecceeeecccC---CCCCCCccEEEEecCceEEeeCC--cceecCce---
Q 019858            4 KVVYEGWMVRYGRRK--IGRSFIHMRYFVLESRLLAYYKKK---PQDNQVPIKTLLIDGNCRVEDRG--LKTHHGHM---   73 (335)
Q Consensus         4 ~~~~EGWly~~g~~~--~g~q~~~~RyFVL~g~~l~~YK~~---P~~~~~Pirs~vid~~~rVed~G--re~~hg~~---   73 (335)
                      .+.+||||++.|.++  ++..-+++|||||+++.|.|||..   +.+ ..|.+++.|.+.+.|+...  -+.--+..   
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~-~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~   80 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRR-GSKKGSIDVEKITCVETVVPEKNPPPERQIPR   80 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEE-EEEEEEEEGGGEEEEEECCCCSSCCGGGCC--
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCC-CceeeEEECcceEEEEeccCCCCcchhccccc
Confidence            466999999987654  556668899999999999999974   223 4899999997777676431  11100000   


Q ss_pred             -----------------eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           74 -----------------VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        74 -----------------~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                                       .|+|.|...   .+.+-|.|.|.+|+..||+||+.||.
T Consensus        81 ~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           81 RGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             -------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence                             189999864   37899999999999999999999965

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.47  E-value=1.5e-13  Score=108.73  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=72.8

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEE-ecceeeecccCCCCCCCccEEEEecCce-------EEeeCCcceecCce
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVL-ESRLLAYYKKKPQDNQVPIKTLLIDGNC-------RVEDRGLKTHHGHM   73 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL-~g~~l~~YK~~P~~~~~Pirs~vid~~~-------rVed~Gre~~hg~~   73 (335)
                      ...+.++|||++.|..   ..-+++||||| +++.|.|||....  ..|.+.+.+..+|       .|++-..+. ....
T Consensus         2 ~~~~~~~G~L~K~g~~---~k~WkkR~fvL~~~~~L~yyk~~~~--~~~~g~i~l~~~~i~l~~~~~v~~v~~~~-~~~~   75 (112)
T 3aj4_A            2 SMAFVKSGWLLRQSTI---LKRWKKNWFDLWSDGHLIYYDDQTR--QNIEDKVHMPMDCINIRTGQECRDTQPPD-GKSK   75 (112)
T ss_dssp             CCSCSEEEEEEEECSS---SCCEEEEEEEECTTSEEEEESSTTC--CSEEEEEEHHHHEEEEEEGGGCCSCCCST-TCCG
T ss_pred             CcceeEEEEEEeeCCC---CCCeeceEEEEeeCCEEEEEcCCCC--CCCCccccccccceeecccccccccCCCC-CCCc
Confidence            3567799999999863   34567999999 9999999986553  3677777665554       333200000 0112


Q ss_pred             eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      .|.|.|..  .+.+.+.|.|.|.+|+..|++||+.|+
T Consensus        76 ~~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           76 DCMLQIVC--RDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             GGEEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            57888874  347899999999999999999999993

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.46  E-value=2.1e-13  Score=106.12  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             eeeeEEEeeec-----ccccccceeeEEEEecceeeecccCCC----CCCCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            7 YEGWMVRYGRR-----KIGRSFIHMRYFVLESRLLAYYKKKPQ----DNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         7 ~EGWly~~g~~-----~~g~q~~~~RyFVL~g~~l~~YK~~P~----~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      |||||++.+..     +-+..-+++|||||+|+.|.|||....    ....|...+-+ .+|.|+..-.   ..+--++|
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l-~~~~~~~~~~---~~~~~~~F   76 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSL-KEAICEVALD---YKKKKHVF   76 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEEC-TTCEEEECSS---CCSSSSEE
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEEC-CCCEEEEccc---ccCCccEE
Confidence            79999999831     134555779999999999999986542    11234444555 3444442111   11234789


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .|..  ...+.+.|.|.|.+|+..|+.||+.|
T Consensus        77 ~i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           77 KLRL--SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             EEEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             EEEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            9874  35689999999999999999999876

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.46  E-value=2.7e-13  Score=111.75  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=74.2

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecc---eeeecccCCCCCCCccEEEEecCceEEee--CCcceecCceeEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR---LLAYYKKKPQDNQVPIKTLLIDGNCRVED--RGLKTHHGHMVYV   76 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~---~l~~YK~~P~~~~~Pirs~vid~~~rVed--~Gre~~hg~~~yv   76 (335)
                      +....+.|||++.+. .-   -+.+|||||+++   .|.|||.. .|. .|++++.| .+|.|..  .+.+.   .--|+
T Consensus         5 ~~~~~~~G~L~k~~~-~~---~WkkrWfVL~~~~~~~Ly~Yk~~-~d~-~p~g~I~L-~g~~V~~~~~~~~~---~~~~~   74 (112)
T 2coc_A            5 SSGSLLCGPLRLSES-GE---TWSEVWAAIPMSDPQVLHLQGGS-QDG-RLPRTIPL-PSCKLSVPDPEERL---DSGHV   74 (112)
T ss_dssp             CSSSSSEEEEEEESS-SS---CEEEEEEECCTTCTTCEEEECCT-TCS-SSCSEECG-GGCEEECCCSSSCC---SSSEE
T ss_pred             cCCceEEEEEEecCC-CC---CceEEEEEEECCCccEEEEECCC-Ccc-CcceEEEc-CCCEEEecCccccc---CCCCE
Confidence            345568999999653 22   366999999996   68878744 454 89999999 7888883  33333   35689


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |.|..   ..+.+.|+|.|.|++.+||+||+.|
T Consensus        75 Fki~~---~~~~y~f~A~s~e~~~~Wl~al~~A  104 (112)
T 2coc_A           75 WKLQW---AKQSWYLSASSAELQQQWLETLSTA  104 (112)
T ss_dssp             EEEEE---TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             EEEec---CCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            99993   3578999999999999999999998

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.45  E-value=4.5e-13  Score=108.42  Aligned_cols=97  Identities=16%  Similarity=0.306  Sum_probs=72.9

Q ss_pred             eeeeEEEe-eecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCc-eE--EeeCCcceecCceeEEEEEEec
Q 019858            7 YEGWMVRY-GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGN-CR--VEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         7 ~EGWly~~-g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~-~r--Ved~Gre~~hg~~~yvf~iyn~   82 (335)
                      +||||.++ |.++.+..-+++|||||+|+.|.|||.. .+ ..|++++-|.+. |.  +..     ....--++|.|...
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~-~~-~~p~~~i~l~~~~~~~~~~~-----~~~~r~~~F~l~~~   74 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDR-TD-VIPLLSVNMGGEQCGGCRRA-----NTTDRPHAFQVILS   74 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSS-SC-CSCSEEEETTC-CEEEEEEC-----CCSSCTTEEEEEET
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCC-CC-CCccceEEecCCEEEeeecc-----CCCCCCeEEEEEcC
Confidence            79999977 5556677888899999999999999865 33 378888777533 44  111     11234568998764


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        ..+.+.|.|.|.||+..||+||..||.+
T Consensus        75 --~~~~y~f~A~s~ee~~~Wi~ai~~~~~~  102 (112)
T 3cxb_B           75 --DRPCLELSAESEAEMAEWMQHLCQAVSK  102 (112)
T ss_dssp             --TSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             --CCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence              3457899999999999999999999654

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.44  E-value=2.1e-13  Score=110.27  Aligned_cols=105  Identities=15%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             CCCceeeeEEEeeec-----ccccccceeeEEEEecceeeecccCCCCC--CC--ccEEEEecCceEEeeCCcceecCce
Q 019858            3 SKVVYEGWMVRYGRR-----KIGRSFIHMRYFVLESRLLAYYKKKPQDN--QV--PIKTLLIDGNCRVEDRGLKTHHGHM   73 (335)
Q Consensus         3 ~~~~~EGWly~~g~~-----~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~--Pirs~vid~~~rVed~Gre~~hg~~   73 (335)
                      ..+.+||||++.+..     +.+..-+++|||||+++.|.|||......  ..  |...+-+ .+|.|+.-- +  ..+-
T Consensus         6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l-~~~~~~~~~-~--~~~r   81 (123)
T 1wjm_A            6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSL-ARAQGSVAF-D--YRKR   81 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEEC-TTCEEEECT-T--CSSC
T ss_pred             CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEc-cCcEEeecc-c--ccCC
Confidence            456799999999864     33466678999999999999998654221  12  3333444 335555321 1  1234


Q ss_pred             eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      -|+|+|...  ..+.+.|.|.|.+|+..|++||+.||.+.
T Consensus        82 ~~~F~i~~~--~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~  119 (123)
T 1wjm_A           82 KHVFKLGLQ--DGKEYLFQAKDEAEMSSWLRVVNAAIASG  119 (123)
T ss_dssp             SSEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEc--CCcEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            578998753  45789999999999999999999997643

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.43  E-value=1.2e-12  Score=107.82  Aligned_cols=102  Identities=22%  Similarity=0.293  Sum_probs=71.4

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEE-ecceeeecccCCCCCCCccEEEEecCceE-EeeCCcc------eecCce
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVL-ESRLLAYYKKKPQDNQVPIKTLLIDGNCR-VEDRGLK------THHGHM   73 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL-~g~~l~~YK~~P~~~~~Pirs~vid~~~r-Ved~Gre------~~hg~~   73 (335)
                      .+.+.+||||++.|...   .-+++||||| +++.|.|||... +. .|.+.+.+...|. |.. |.+      .-....
T Consensus         5 ~~~v~~~G~L~K~g~~~---k~WkkRwFVL~~~~~L~Yyk~~~-~~-~~~g~i~l~~~~~~i~~-~~~~~~v~~~~~~~~   78 (130)
T 2d9v_A            5 SSGLVRGGWLWRQSSIL---RRWKRNWFALWLDGTLGYYHDET-AQ-DEEDRVVIHFNVRDIKV-GQECQDVQPPEGRSR   78 (130)
T ss_dssp             CCCEEEEEEEEEECSSS---CCEEEEEEEEETTTEEEEESSSS-TT-SEEEEEECTTTEEEEEE-GGGCSSCCCCSSCCT
T ss_pred             CCceeEEEEEEeecCcc---CCceeeEEEEccCCEEEEEeCCC-CC-CcCceEecccceeEEec-cccccccCCCCCCCc
Confidence            34566999999998633   3466999999 899999998654 22 5777776654442 211 100      001123


Q ss_pred             eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      -|.|.|...  ..+.+.|.|.|.+|+..||+||+.|+.
T Consensus        79 ~~~F~I~~~--~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           79 DGLLTVNLR--EGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             TTEEEEEET--TSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEeC--CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            468888763  346899999999999999999999954

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.43  E-value=5.8e-13  Score=112.96  Aligned_cols=101  Identities=21%  Similarity=0.245  Sum_probs=79.7

Q ss_pred             ceeeeEEEe-----eecccccccceeeEEEEecceeeecccCC---CC----CCCccEEEEecCceEEeeCCcceecCce
Q 019858            6 VYEGWMVRY-----GRRKIGRSFIHMRYFVLESRLLAYYKKKP---QD----NQVPIKTLLIDGNCRVEDRGLKTHHGHM   73 (335)
Q Consensus         6 ~~EGWly~~-----g~~~~g~q~~~~RyFVL~g~~l~~YK~~P---~~----~~~Pirs~vid~~~rVed~Gre~~hg~~   73 (335)
                      .|+|+|++.     |.+ .....+.+|||||.||.|.||+.+.   .+    ..+|.+.+.| .||+|+.  .+  +...
T Consensus         2 ~~~G~L~rk~llK~G~k-~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L-~g~~V~~--~e--~~~~   75 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRK-PALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSI-VGWMVQL--PD--DPEH   75 (126)
T ss_dssp             CEEEEEEEEEEEBTTBC-CSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEEC-TTCEEEC--CC--CTTS
T ss_pred             ceeeeeeeeehhhcCCc-ccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEe-CCCEEEe--cC--CCCC
Confidence            589999976     433 2246677999999999999999663   11    1489999999 9999983  22  2245


Q ss_pred             eEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        74 ~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .++|.|++. +..+.+.|.|.|.++|+.|++||..||...
T Consensus        76 ~~~F~L~~~-~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~  114 (126)
T 2dtc_A           76 PDIFQLNNP-DKGNVYKFQTGSRFHAILWHKHLDDACKSS  114 (126)
T ss_dssp             TTEEEEECT-TSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred             CCEEEEeeC-CCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence            789999975 456779999999999999999999997543

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.41  E-value=6.1e-13  Score=113.16  Aligned_cols=105  Identities=16%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             CCceeeeEEEeee-----cc--cccccceeeEEEEecceeeecccCCCCCCCccEEEEecC-ceEEeeCCcceecCceeE
Q 019858            4 KVVYEGWMVRYGR-----RK--IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG-NCRVEDRGLKTHHGHMVY   75 (335)
Q Consensus         4 ~~~~EGWly~~g~-----~~--~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~-~~rVed~Gre~~hg~~~y   75 (335)
                      .+.+||||+++..     .+  -+..-+++|||||+++.|.|||.+......|.+.+.|+. +|.|+-...+   .+.-|
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~---~~~~~   78 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSE---TKRKN   78 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSS---CSCSS
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEecccc---CCCCC
Confidence            4679999995420     01  133447799999999999999876543346777766654 2444321111   13347


Q ss_pred             EEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      +|.|...   ++.+.|.|.|.+|+..||.||+.|+....
T Consensus        79 ~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~~  114 (168)
T 2j59_M           79 VFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLNE  114 (168)
T ss_dssp             EEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCCH
T ss_pred             EEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence            8999864   27899999999999999999999976543

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.38  E-value=2.1e-12  Score=116.29  Aligned_cols=103  Identities=15%  Similarity=0.262  Sum_probs=78.4

Q ss_pred             CceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            5 VVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      +.++|||++.|... +...-+++|||||+++.|.|||... + ..|.+.+.|.+++.|...-. ...++.-|+|.|... 
T Consensus       106 v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~-~-~~p~g~I~L~~~~~v~~~~~-~~~~~k~~~F~I~t~-  181 (211)
T 1u5e_A          106 VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK-D-KQQKGEFAIDGYDVRMNNTL-RKDGKKDCCFEICAP-  181 (211)
T ss_dssp             EEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTT-C-SSCSEEEECTTCEEEECGGG-CSSTTGGGEEEEECS-
T ss_pred             ccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCC-C-ccceEEEEeCCcEEEEcCCc-cccCCCCCEEEEEcC-
Confidence            56999999999642 2345577999999999999998654 3 48999999977776653100 011233478888863 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       ..+.+.|.|.|.+|+..||+||+.||..
T Consensus       182 -~~r~~~l~A~s~~e~~~Wi~aL~~ai~~  209 (211)
T 1u5e_A          182 -DKRIYQFTAASPKDAEEWVQQLKFILQD  209 (211)
T ss_dssp             -SSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             -CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence             4689999999999999999999999764

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.37  E-value=2.7e-12  Score=112.18  Aligned_cols=98  Identities=22%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCC----------------------C----------CCc----
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD----------------------N----------QVP----   49 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~----------------------~----------~~P----   49 (335)
                      .++||||+.+...-.++   +|||||.++.|.|++..-.+                      +          .+|    
T Consensus         2 ~k~G~L~~~~~~~~~w~---~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~   78 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWY---PHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREH   78 (150)
T ss_dssp             CEEEEEEEEETTTTEEE---EEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSS
T ss_pred             CcceEEEeecCCCCCce---EeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhc
Confidence            47999999998777777   99999999999988822111                      0          122    


Q ss_pred             -----------cEEEEecCceEEeeC-CcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           50 -----------IKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        50 -----------irs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                                 .+++.| .+|+|+.. +.+.   .-.|||+|-......+.+.|||.|.||+..||+||++|+
T Consensus        79 l~E~~~lG~l~kG~IdL-~gc~V~~~~~~~~---~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa  147 (150)
T 2fjl_A           79 LDENSPLGDLLRGVLDV-PACQIAIRPEGKN---NRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA  147 (150)
T ss_dssp             SCTTTTTTTCCCEEECS-TTCEEEEETTCSS---SCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceEec-CccEEEeccCCCC---CCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence                       577777 88888863 1222   478999998887778899999999999999999999993

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.35  E-value=3.1e-12  Score=115.75  Aligned_cols=99  Identities=16%  Similarity=0.264  Sum_probs=80.5

Q ss_pred             CCCceeeeEEEeeec--ccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            3 SKVVYEGWMVRYGRR--KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         3 ~~~~~EGWly~~g~~--~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      ..+.++|||++.|..  +++..-+++|||||+++.|.|||....  ..|.+++.|.++..|++...      .-|+|.|.
T Consensus        56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~--~~~~g~I~L~~~~~v~~~~~------k~~~F~I~  127 (228)
T 3tfm_A           56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE--EKLKGTVEVRSAKEIIDNTN------KENGIDII  127 (228)
T ss_dssp             CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC--CSEEEEEEGGGCSEEEEETT------TTSEEEEE
T ss_pred             CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC--cceeEEEEcCCCEEeccCCC------CCcEEEEE
Confidence            345699999999974  355567789999999999999986543  48999999988777776431      23678886


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      .   ..+.+.|.|.|.+|+..|++||+.||..
T Consensus       128 t---~~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A          128 M---ADRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             C---SSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             c---CCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            5   4689999999999999999999999864

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.32  E-value=9.2e-12  Score=115.89  Aligned_cols=105  Identities=16%  Similarity=0.171  Sum_probs=77.4

Q ss_pred             CCCceeeeEEEeeec------c---cccccceeeEEEEecceeeecccCCC----CCCCccEEEEecCceEEeeCCccee
Q 019858            3 SKVVYEGWMVRYGRR------K---IGRSFIHMRYFVLESRLLAYYKKKPQ----DNQVPIKTLLIDGNCRVEDRGLKTH   69 (335)
Q Consensus         3 ~~~~~EGWly~~g~~------~---~g~q~~~~RyFVL~g~~l~~YK~~P~----~~~~Pirs~vid~~~rVed~Gre~~   69 (335)
                      +.+.++|||++...-      +   .|..-+++|||||+|+.|.|||.++.    .+..|.+.+.|. +|.|+...... 
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~-~~~v~~~~~~~-   86 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAE-DSIVQSVPEHP-   86 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECT-TCEEEECTTCS-
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcC-CcEEEECCcCC-
Confidence            456799999943321      1   12456789999999999999998642    225899999995 66666421111 


Q ss_pred             cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                        .--|+|.|...  ..+.+.|.|.|.+|+..||+||+.|+...
T Consensus        87 --kk~~~F~I~t~--~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~  126 (263)
T 3a8p_A           87 --KKEHVFCLSNS--CGDVYLFQATSQTDLENWVTAIHSACASL  126 (263)
T ss_dssp             --SCSSEEEEECT--TSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCEEEEEcC--CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence              23578999864  56789999999999999999999998655

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=5.4e-12  Score=108.92  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.|+.++||=..+..++++--.++|||||+|+.|.|||++.....+||+.+.+ .+|+|++.  .++ .+--|.|+|--.
T Consensus         7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L-~gceV~pd--~~~-~~~kf~ikl~iP   82 (137)
T 2ys3_A            7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNL-KGCEVVPD--VNV-SGQKFCIKLLVP   82 (137)
T ss_dssp             SCCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCT-TTCEEEEC--CBG-GGTBEEEEEEEE
T ss_pred             CCcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCCCceEEEC-CCCEEecc--ccc-cCCceEEEEEcc
Confidence            45789999999999999988888999999999999999888654589999999 88999974  322 345678777765


Q ss_pred             -CCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           83 -KEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        83 -~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       .++.+.+-|.|.|.++.++||.|++.|
T Consensus        83 s~~g~r~y~l~cdsEeqy~~WMaA~rlA  110 (137)
T 2ys3_A           83 SPEGMSEIYLRCQDEQQYARWMAGCRLA  110 (137)
T ss_dssp             CSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence             467799999999999999999999999

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.31  E-value=2e-12  Score=105.01  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=73.3

Q ss_pred             CCCceeeeEEEeeec-----ccccccceeeEEEEecceeeecccCCCCCC---Ccc---EEEEecCceEEeeCCcceecC
Q 019858            3 SKVVYEGWMVRYGRR-----KIGRSFIHMRYFVLESRLLAYYKKKPQDNQ---VPI---KTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         3 ~~~~~EGWly~~g~~-----~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~---~Pi---rs~vid~~~rVed~Gre~~hg   71 (335)
                      .++.+||||++++.-     +.+..-+++|||||+|+.|.|||.......   .|+   +++-| .+|.|+.--..   .
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L-~~~~v~~~~d~---~   81 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDL-QNAAIEIASDY---T   81 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCC-SSCCCEECCSS---S
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEEC-CCCEEEeCCCC---C
Confidence            467799999998652     235667889999999999999987653221   222   34445 44555431111   1


Q ss_pred             ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      +--++|+|..  ...+.+.|.|.|.+|+..|++||+.||..
T Consensus        82 kr~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           82 KKKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             SSTTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            2356888872  45688999999999999999999999764

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.27  E-value=3.4e-11  Score=99.11  Aligned_cols=105  Identities=13%  Similarity=0.166  Sum_probs=73.3

Q ss_pred             CCCceeeeEEEeee----cccccccceeeEEEEecceeeecccCCCCC----------CCccEEEEecCceEEeeCCcce
Q 019858            3 SKVVYEGWMVRYGR----RKIGRSFIHMRYFVLESRLLAYYKKKPQDN----------QVPIKTLLIDGNCRVEDRGLKT   68 (335)
Q Consensus         3 ~~~~~EGWly~~g~----~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~----------~~Pirs~vid~~~rVed~Gre~   68 (335)
                      ..+.+||||+++..    .+.+..-+++|||||+|+.|.+||+.....          ..|...+-| .+|.|+.--.+.
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L-~~a~v~~~~~d~   84 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVEL-RGATLSWAPKDK   84 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEEC-TTCEEEECCGGG
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEc-CCCEEEeccccc
Confidence            45679999999832    233545678999999999999999755332          157777776 667777531011


Q ss_pred             ecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        69 ~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        .+--+||.|-.  ...+.+.|.|.|.+|+..|++||..||.+
T Consensus        85 --~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~~  124 (124)
T 3pp2_A           85 --SSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQE  124 (124)
T ss_dssp             --CSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC-
T ss_pred             --CCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHhC
Confidence              12245788764  34578999999999999999999999853

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.27  E-value=1.2e-11  Score=112.54  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=73.4

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEee--CCcceecCceeEEEEEE
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVED--RGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed--~Gre~~hg~~~yvf~iy   80 (335)
                      .++++||||+.|.++-+++   +|||||+++.|.|||...... ...|...-+ ..|.|..  .+++......-|+|+|.
T Consensus       167 ~p~~~G~L~k~~~~~k~Wk---kR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l-~~~~v~~~~~~~~~~~~~~~~~F~i~  242 (291)
T 3tca_A          167 VPELEGALYLKEDGKKSWK---RRYFLLRASGIYYVPKGKTKTSRDLACFIQF-ENVNIYYGIQCKMKYKAPTDHCFVLK  242 (291)
T ss_dssp             CCCCEEEEEEECTTSSCEE---EEEEEECSSEEEECCTTCCSSTTTCEEEEEG-GGCEEEEECSHHHHHCCSSSCEEEEE
T ss_pred             CCceEEEEEEeCCCCCCce---EEEEEEeCCEEEEEecCccccccCceeeccc-eeEEEEecCccccccCCCCCeEEEEE
Confidence            4679999999998776655   999999999999998655333 222332333 3344432  23444444567899998


Q ss_pred             ecC---CCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           81 NKK---EKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        81 n~~---~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      ...   ...+.+-|+|.|.+|+..||.||+.|.
T Consensus       243 ~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          243 HPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             CTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            543   334678899999999999999999984

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.26  E-value=2e-11  Score=117.23  Aligned_cols=99  Identities=20%  Similarity=0.359  Sum_probs=77.3

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +.++|||++.|...-+   +++|||||+++.|.|||... + ..|.+.+.|. +|.|.....    ...-|+|.|+....
T Consensus       213 ~~k~G~L~K~g~~~k~---WkkRwFVL~~~~L~Yyk~~~-~-~~p~G~I~L~-~~~v~~~~~----~~~~~~F~I~~~~~  282 (347)
T 2r09_A          213 PDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTT-D-KEPRGIIPLE-NLSIREVED----PRKPNCFELYNPSH  282 (347)
T ss_dssp             CCEEEEEEEECSSSCC---EEEEEEEEETTEEEEESSTT-C-SSCSEEEECT-TCEEEEECC----SSCSSEEEEECSSS
T ss_pred             cccCCeeEecCCCccc---ceeEEEEEcCCEEEEEcCCC-c-cCCcEEEEcC-CeEEEEccC----CCCCCEEEEEeCCc
Confidence            5799999999876444   55999999999999998543 4 4899999995 555665211    23457899987532


Q ss_pred             -------------------CcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           85 -------------------KYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        85 -------------------~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                                         +.+.+.|.|.|.+|+..|++||+.||.+.
T Consensus       283 ~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~  330 (347)
T 2r09_A          283 KGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  330 (347)
T ss_dssp             TTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence                               25889999999999999999999998654

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.23  E-value=3.2e-11  Score=117.67  Aligned_cols=103  Identities=17%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             CCCceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEE---eeCCcceecC-ceeEEE
Q 019858            3 SKVVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV---EDRGLKTHHG-HMVYVL   77 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rV---ed~Gre~~hg-~~~yvf   77 (335)
                      ..+.++|||++.|... -+   +++|||||+++.|.|||.. .+. .|.+++.|+..+.|   .+.-.....+ +--|.|
T Consensus       267 ~~~~k~G~L~K~g~~~~k~---WKkRwFVL~~~~L~YYk~~-~d~-~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F  341 (386)
T 3lju_X          267 RNYLKEGYMEKTGPKQTEG---FRKRWFTMDDRRLMYFKDP-LDA-FARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGI  341 (386)
T ss_dssp             CCCSEEEEEEECCTTSCSC---CEEEEEEEETTEEEEESST-TCS-BCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEE
T ss_pred             cccceeeeEEEECCCCCCC---CcccEEEEECCEEEEEecC-CCc-ccceEEEeecceeeeeecccCCccccccCCCcEE
Confidence            3456999999998654 34   4599999999999999864 344 89999999665443   3311111111 115899


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .|...   .+.+.|.|.|.+|+..|++||+.||+++
T Consensus       342 ~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~p  374 (386)
T 3lju_X          342 TIVTP---DRKFLFACETESDQREWVAAFQKAVDRP  374 (386)
T ss_dssp             EEECS---SCEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred             EEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            99854   4899999999999999999999998774

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.22  E-value=1.8e-11  Score=118.45  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=74.3

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      +.+.+|||||+...+.....-+++|||||+++.|.|||...   ..|...+.| .+|.|.....+    .--|+|.|...
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~---~~~~~~~~l-~~~~v~~~~~~----~r~~cF~i~~~  370 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGA---VAGGLIQDL-DNCSVMAVDCE----DRRYCFQITTP  370 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTC---SSCCCCBCS-SCCEEEEECCT----TCSSEEEEECT
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCC---CCCCeEEEC-CceEEEECCCC----CCCceEEEEec
Confidence            34569999999865444345578999999999999998544   244445555 45666542111    22478999864


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                       ++.+.+.|.|.|.+|+..||+||+.||.+.
T Consensus       371 -~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~  400 (407)
T 4h8s_A          371 -NGKSGIILQAESRKENEEWICAINNISRQI  400 (407)
T ss_dssp             -TSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred             -CCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence             455789999999999999999999997654

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.22  E-value=3.3e-11  Score=98.54  Aligned_cols=105  Identities=15%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEec-ceeeecccCCCC-------C---------CCccEEEEecCceEEeeC-
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLES-RLLAYYKKKPQD-------N---------QVPIKTLLIDGNCRVEDR-   64 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g-~~l~~YK~~P~~-------~---------~~Pirs~vid~~~rVed~-   64 (335)
                      +.+.+||||++.+.+.+ ..-+++|||||++ .+|.||+. +.+       .         ..|.+.+.+ .+|.+.+. 
T Consensus         2 ~~~~k~G~L~K~~g~~~-~k~WkkRwFvL~~~~~l~Y~~~-~~d~~~~~~~~~i~l~~~~~~~~~~~i~l-~~~~~~~~~   78 (128)
T 2rlo_A            2 AIPIKQSFLLKRSGNSL-NKEWKKKYVTLSSNGFLLYHPS-INDYIHSTHGKEMDLLRTTVKVPGKRPPR-AISAFGPSA   78 (128)
T ss_dssp             CCEEEEEEEEEECSCST-TCCEEEEEEEEETTTEEEEESS-HHHHHHTCSCEEEESSSCEEECSSCCCCC-SSCCCSCCS
T ss_pred             CcceeEEEEEEecCCCc-cCCccEEEEEEeCCCEEEEecc-hhhhccccCCCeeeeeeeEEecCCCcccc-ccccccccc
Confidence            45679999999953322 3346699999997 57776653 111       0         123332333 22222210 


Q ss_pred             -CcceecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           65 -GLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        65 -Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       |........-|.|.|...  ..+.+.|.|.|.+|+..||+||+.||..
T Consensus        79 ~~~~~~~~~~~~~F~I~t~--~~r~~~l~A~s~~e~~~Wi~ai~~~i~~  125 (128)
T 2rlo_A           79 SGSAGQAEEENFEFLIVSS--TGQTWHFEAASFEERDAWVQAIESQILA  125 (128)
T ss_dssp             CCCCSSCCCCCCCEEEECT--TSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCceEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence             000000123467888643  4588999999999999999999999754

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.20  E-value=3.5e-11  Score=115.74  Aligned_cols=101  Identities=13%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .+.++|||++.|.+.+...-+++|||||+++.|.|||. + + ..|.+.+-| .+|.|...  +.  ..--|+|.|... 
T Consensus       277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~-~-~~~~~~i~l-~~~~v~~~--~~--~~r~~~F~i~t~-  347 (385)
T 2q13_A          277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-G-D-VAGGLAMDI-DNCSVMAV--DC--EDRRYCFQITSF-  347 (385)
T ss_dssp             CSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-S-C-SSCEEEEEC-TTCEEEEE--CC--TTCSSEEEEECT-
T ss_pred             CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-C-C-cCCCceEEc-cceEEEec--cc--cCCCceEEEEeC-
Confidence            45799999999876433334779999999999998887 2 3 368888878 44555432  11  123478999854 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      ++.+.+.|.|.|.+|+..||+||+.||.+.
T Consensus       348 ~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~  377 (385)
T 2q13_A          348 DGKKSSILQAESKKDHEEWICTINNISKQI  377 (385)
T ss_dssp             TSCBCCCEECSSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            334889999999999999999999997653

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.17  E-value=3.4e-11  Score=112.20  Aligned_cols=97  Identities=19%  Similarity=0.352  Sum_probs=74.6

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecc-------eeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCc
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR-------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-------~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      ..+.++|||++.       .-+++|||||+++       .|.|||.+....   ..|.+++-|..++.|+....    .+
T Consensus         8 ~~v~k~G~L~K~-------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~----~~   76 (264)
T 1qqg_A            8 SDVRKVGYLRKP-------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD----SK   76 (264)
T ss_dssp             -CEEEEEEEECT-------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC----SS
T ss_pred             CCccEEEEEEEC-------CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC----CC
Confidence            456699999987       2466999999999       999998665311   37999999977777765321    23


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .-|+|.|+..   .+.+.|.|.|.+|+..|++||+.++.+.
T Consensus        77 ~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           77 NKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             CSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             CCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            4578999854   7899999999999999999999996554

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.09  E-value=1.1e-10  Score=113.87  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             CceeeeEEEeeecccccccceeeEEEE--ecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEE-e
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY-N   81 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL--~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy-n   81 (335)
                      ..+||||++.|...-.+.   +|||||  +++.|.|||+. .+. .|.+.+.|.+.+.|..  -+.  .+..+.|.|. .
T Consensus       146 ~~keG~L~KrG~~~k~Wk---rRwFVL~~~~~~L~Yy~~~-~~~-~p~g~I~L~~~~~~~~--~~~--~~~~~~f~I~~~  216 (386)
T 3lju_X          146 GYREGFLWKRGRDNGQFL---SRKFVLTEREGALKYFNRN-DAK-EPKAVMKIEHLNATFQ--PAK--IGHPHGLQVTYL  216 (386)
T ss_dssp             SEEEEEEEEECSSSCCEE---EEEEEEETTTTEEEEEC-------CCSEEEEGGGEEEEEC--HHH--HTSTTCEEEEEE
T ss_pred             cccccceeeeccccCCce---EEEEEEEcCCCEEEEECCC-Ccc-CcccEEEeeccEEEEc--ccc--cCCCceEEEEEe
Confidence            458999999998876655   999999  99999999865 344 9999999966444442  111  1244566664 3


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      ....++.+-|.|.|.+|+..|++||+.|..
T Consensus       217 ~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~  246 (386)
T 3lju_X          217 KDNSTRNIFIYHEDGKEIVDWFNALRAARF  246 (386)
T ss_dssp             ETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEcCCHHHHHHHHHhhhhccc
Confidence            346679999999999999999999998843

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=98.98  E-value=8.5e-10  Score=91.28  Aligned_cols=104  Identities=15%  Similarity=0.247  Sum_probs=74.8

Q ss_pred             ceeeeEEE--eeecccccccceeeEEEEecceeeecccCCCC-CCCccEEEEecCceEEeeCCc-ceecC---ceeEEEE
Q 019858            6 VYEGWMVR--YGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD-NQVPIKTLLIDGNCRVEDRGL-KTHHG---HMVYVLS   78 (335)
Q Consensus         6 ~~EGWly~--~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~-~~~Pirs~vid~~~rVed~Gr-e~~hg---~~~yvf~   78 (335)
                      .+||||-+  .|..+-  +.+++|||||.++.|.||+.++.. ...|.+.+-|+....|+.-.. +.+|-   ...++|.
T Consensus         2 ~~eGwl~~pk~~~~~k--~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~   79 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKK--FGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQ   79 (117)
T ss_dssp             CSEEEEECCCCSSSSC--CCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEE
T ss_pred             ceEEEEEeecCCCccC--CCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEE
Confidence            48999986  432222  235599999999999999976532 247898888877766665311 11221   2468999


Q ss_pred             EEecC---CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           79 VYNKK---EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        79 iyn~~---~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      |-...   ...+.+-|.|.|.||..+|+.||+.+|.
T Consensus        80 I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           80 ILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             EEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             EEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            95432   3458999999999999999999999864

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=98.84  E-value=7e-09  Score=98.37  Aligned_cols=103  Identities=15%  Similarity=0.122  Sum_probs=74.3

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEee--CCcceecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVED--RGLKTHHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed--~Gre~~hg~~~yvf~   78 (335)
                      +.++.+||||+.+..+-+++   +|||||+++.|.||++.. ++  ..++..+.+ ++|-|..  .+++.+.--.-|.|+
T Consensus       156 ~~pe~~G~L~~k~~~~k~Wk---kRyfvLr~sgLyy~~K~~-sk~~r~l~~l~~L-~~~~VY~~~~~kkk~kaPt~~~F~  230 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWK---KRYFLLRASGIYYVPKGK-AKVSRDLVCFLQL-DHVNVYYGQDYRNKYKAPTDYCLV  230 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEE---EEEEEECSSCEEEC----------CCEEEECG-GGCEEEEESSHHHHTCCSCSCEEE
T ss_pred             CCCccEEEEEEECCCCCCCe---EEEEEEeCCEEEEEeCCC-CCccccceEEEEc-CCcEEEEecccccccCCCCCcEEE
Confidence            46779999999988777776   999999999998777543 33  244556667 4555543  234444445689999


Q ss_pred             EEecC---CCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           79 VYNKK---EKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        79 iyn~~---~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |....   .......|.|.|.++...||.||..|.
T Consensus       231 ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          231 LKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             EECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence            99654   345678999999999999999999993

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=98.84  E-value=4.2e-09  Score=99.79  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             CCCCceeeeEEEe-----ee----cccccccceeeEEEEecceeeecccCCCCC----CCccEEEEecCceEEeeCCcce
Q 019858            2 SSKVVYEGWMVRY-----GR----RKIGRSFIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLIDGNCRVEDRGLKT   68 (335)
Q Consensus         2 ~~~~~~EGWly~~-----g~----~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~----~~Pirs~vid~~~rVed~Gre~   68 (335)
                      .+++.++|||.++     |.    ...+...+++|||||+|+.|.|||.+....    ..|...+.| .+|.|+..-.  
T Consensus         8 ~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L-~ga~v~~a~d--   84 (279)
T 3a8n_A            8 QGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWV-ENSIVQAVPE--   84 (279)
T ss_dssp             --CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBC-CSCEECCCTT--
T ss_pred             CCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEec-cCcEEEeccc--
Confidence            4567799999875     21    123567888999999999999999765331    367778888 6677773211  


Q ss_pred             ecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        69 ~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       +.+--+||+|-..  ..+.+.|.|.|.+|+..|+.||..|+..
T Consensus        85 -~~kKk~vF~L~t~--~g~~yLFQA~s~eEm~~WI~aI~~a~~~  125 (279)
T 3a8n_A           85 -HPKKDFVFCLSNS--LGDAFLFQTTSQTELENWITAIHSACAA  125 (279)
T ss_dssp             -SSSSCSCCCEEET--TTEEEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCCcEEEEEcC--CCCEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence             1122358888654  6778999999999999999999999653

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=98.78  E-value=5.2e-08  Score=86.81  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=83.0

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      ..|+-.+||=..+..++.+-=+++||||+++..|.|||.+-....+|+.++.+ .+|.|+..  .++.+ -=|.+++...
T Consensus        45 ~iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~geP~~~I~L-rGCEVtpD--Vnva~-~Kf~IkL~vP  120 (173)
T 4f7h_A           45 SIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNL-RGCEVTPD--VNISG-QKFNIKLLIP  120 (173)
T ss_dssp             GTTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSCCSEEEEC-TTCEEEEE--EETTT-TEEEEEEEEE
T ss_pred             cChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCCCceEEec-CceEEecc--ccccc-cceeEEEecc
Confidence            34667899988899999999999999999999999999877656799999999 88888861  11111 1144555544


Q ss_pred             -CCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           83 -KEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        83 -~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       .++.+.+-|.|.|.++-++||-|++.|
T Consensus       121 ~~~gm~e~~Lrcd~E~qya~WMAAcrLA  148 (173)
T 4f7h_A          121 VAEGMNEIWLRCDNEKQYAHWMAACRLA  148 (173)
T ss_dssp             ETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCcceeeeecCCHHHHHHHHHHhhhh
Confidence             357888999999999999999999999

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=6.7e-08  Score=82.48  Aligned_cols=104  Identities=16%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             CCCCCceeeeEEEeeecccccccceeeEEEEecc------eeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCc
Q 019858            1 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         1 ~~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~------~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      |...+.|+||||+-..-++|-- +++|||||-..      .|.+|..+-..+  +.|-|++-+.+|++|.+-+-|+---+
T Consensus         8 m~e~~vk~G~L~~q~q~~fgkK-Wrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk   86 (127)
T 2d9w_A            8 MGDGAVKQGFLYLQQQQTFGKK-WRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPR   86 (127)
T ss_dssp             SCCCSSEEEEEEECBCSSSSCB-CCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCS
T ss_pred             ccCccccceEEEecccchhhhh-hheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCC
Confidence            4456779999999887789865 99999999875      467676543322  68899999999999999766621223


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .-++|+|+-+   ++.+.|||.+ +|...||.+|.+.
T Consensus        87 ~~~aF~l~T~---er~~~laAe~-~E~~~Wi~~ic~~  119 (127)
T 2d9w_A           87 DTSAFFLETK---ERLYLLAAPA-AERGDWVQAICLL  119 (127)
T ss_dssp             SCEEEEEEES---SCEEEEEECH-HHHHHHHHHHHHH
T ss_pred             cceEEEEEeC---CcEEEEEeCc-HHHHHHHHHHHHH
Confidence            5599999975   4999999996 5899999999877

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.74  E-value=1.5e-08  Score=97.32  Aligned_cols=103  Identities=20%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEe-cceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~-g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      +.++.+||||.|.|..-   ..+++|||||+ ++.|.|||++|...   .+||...-+.++..+...+      ...+.|
T Consensus         3 ~~~v~keG~L~K~g~~~---k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~~------~~~~~f   73 (446)
T 4ejn_A            3 DVAIVKEGWLHKRGEYI---KTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER------PRPNTF   73 (446)
T ss_dssp             -CCEEEEEEEEEEETTT---TEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEECS------SSTTEE
T ss_pred             CceEEEEeeEEeecccc---ccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCCC------CCCcee
Confidence            45677999999998543   35779999997 78888999998554   3455443332222222221      113456


Q ss_pred             EEEecCCC-cceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           78 SVYNKKEK-YHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        78 ~iyn~~~~-~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .|...... ...-++.+.++||.+.|+.||+.||+..
T Consensus        74 ~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~  110 (446)
T 4ejn_A           74 IIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL  110 (446)
T ss_dssp             EEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC-
T ss_pred             EEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhhh
Confidence            66532211 1122788999999999999999997654

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=98.64  E-value=2e-07  Score=87.18  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=72.8

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCc--cEE-EEecCceEEee-CCcceecCceeEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVP--IKT-LLIDGNCRVED-RGLKTHHGHMVYVLS   78 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~P--irs-~vid~~~rVed-~Gre~~hg~~~yvf~   78 (335)
                      +.++.+||||+.+..+-+++   +|||||+++.|.||+ +..++ .|  +.. +-+++...... .+++.+.--.-|.|+
T Consensus       130 ~~P~~~G~L~~ke~~~K~Wk---kRyfvLr~sgLy~~~-k~~sk-~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~  204 (256)
T 3hk0_A          130 SSPEIQGFLHVKELGKKSWK---KLYVCLRRSGLYCST-KGTSA-APRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLC  204 (256)
T ss_dssp             SCEEEEEEEEEECTTSSCEE---EEEEEEETTEEEEES-STTCC-CGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEE
T ss_pred             CCCcceeEEEEecCCCCcce---EEEEEEeCCEEEEEe-cCCCC-ccccceEEEEcCCCEEEEecccccccCCCCCCEEE
Confidence            45679999999987776666   999999999997666 44444 33  222 24533333232 345544445579999


Q ss_pred             EEecCC---CcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           79 VYNKKE---KYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        79 iyn~~~---~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |.....   .....-|.|.|.+++..|+.||..|.
T Consensus       205 ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          205 IKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             EEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            985432   24568899999999999999999993

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=98.53  E-value=6.8e-07  Score=79.07  Aligned_cols=103  Identities=13%  Similarity=0.238  Sum_probs=76.1

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      ..++-.|||=..+..++.+-=+++||||+++-.|.|||.+-....+|+.++-+ .+|.|...   ...-+.=|.+++...
T Consensus        24 ~iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~geP~~~inL-rGCEVtPD---Vnva~~Kf~ikL~ip   99 (165)
T 4bbk_A           24 DIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNL-RGCEIVPD---VNVSGRKFGIKLLIP   99 (165)
T ss_dssp             --CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTTSCCSEEEEC-TTCEEEEE---EETTTTEEEEEEEEE
T ss_pred             cChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhcCCCceEEec-CccEEecc---cccccceeeEEEecC
Confidence            45678899988899999999999999999999999999877666899999999 66888851   000112266777655


Q ss_pred             C-CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           83 K-EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        83 ~-~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      . ++...+-|.|.|.++-++||-|++.|
T Consensus       100 ~~~gm~e~~LrcdsE~QYa~WMAAcrLA  127 (165)
T 4bbk_A          100 VADGMNEVYLRCDHEDQYARWMAACILA  127 (165)
T ss_dssp             ETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCcceeeeeecCCHHHHHHHHHHhhhc
Confidence            4 46678889999999999999999999

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.07  E-value=2.4e-05  Score=66.92  Aligned_cols=101  Identities=20%  Similarity=0.332  Sum_probs=69.6

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-Ccce-ecCceeEEEEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKT-HHGHMVYVLSV   79 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~-~hg~~~yvf~i   79 (335)
                      .+.+-+||||+|.....--   .+++|++|++|.+.||+.+-.  ..|.|-+.+.+=..|+.- +-.. ..+...+.|.|
T Consensus         5 ~s~vlkeGWmVH~t~~d~~---rKRHYWrLD~K~Itlf~~e~~--~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi   79 (129)
T 2d9z_A            5 SSGMVKEGWMVHYTSRDNL---RKRHYWRLDSKCLTLFQNESG--SKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEI   79 (129)
T ss_dssp             CTTSEEEEEEEEEESSCCC---CEEEEEEEESSCEEEESCSSC--CSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEE
T ss_pred             CCceeecceEEEEccCCcc---ccceeeEecCCeEEEEecCCC--CceeceeeHHHhcccccccCccccCCCCCCceEEE
Confidence            3566799999999976654   559999999999999998643  356666666666667663 1211 12334466777


Q ss_pred             EecCCCcceEEEeec---------------CHHHHHHHHHHHHHHH
Q 019858           80 YNKKEKYHRITMAAF---------------NIQEALIWKEKIELVI  110 (335)
Q Consensus        80 yn~~~~~~~~~laa~---------------s~eea~~W~~a~~~Ai  110 (335)
                      -.   .+..+=+|+.               ..+.|..|..|+++|+
T Consensus        80 ~T---~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL  122 (129)
T 2d9z_A           80 IT---DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL  122 (129)
T ss_dssp             EC---SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred             EE---CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence            53   2444445552               2799999999999994

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.02  E-value=3.6e-05  Score=65.50  Aligned_cols=101  Identities=17%  Similarity=0.293  Sum_probs=72.1

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCccee--cCceeEEEEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH--HGHMVYVLSV   79 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~--hg~~~yvf~i   79 (335)
                      .+.+-+||||+|.....--+   +++|++|++|.+.||+.+- + ..|.|.+.+.+=+.|+.---.+.  -+...+.|.|
T Consensus         5 ~s~vlkeGW~VH~t~~d~~r---KRHYWrLD~K~Itlf~~e~-~-~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi   79 (125)
T 2coa_A            5 SSGTLREGWVVHYSNKDTLR---KRHYWRLDCKCITLFQNNT-T-NRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEI   79 (125)
T ss_dssp             CCSCSEEEEEEECCSSSCCC---EEEEEEECSSEEEEESSSS-C-SSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEE
T ss_pred             CCceeecceEEEEccCCccc---cceeeEecCCeEEEEecCC-C-CceeeeeehhHeecccccccccccCCCCCCceEEE
Confidence            35667999999999777655   5999999999999999863 2 37888888888888887422221  2234578888


Q ss_pred             EecCCCcceEEEeec-----------CHHHHHHHHHHHHHHH
Q 019858           80 YNKKEKYHRITMAAF-----------NIQEALIWKEKIELVI  110 (335)
Q Consensus        80 yn~~~~~~~~~laa~-----------s~eea~~W~~a~~~Ai  110 (335)
                      -..   +..+=+|+.           ..+.|..|..|+++|+
T Consensus        80 ~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqAL  118 (125)
T 2coa_A           80 VTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  118 (125)
T ss_dssp             ECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhc
Confidence            642   222333331           2388999999999994

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=97.64  E-value=0.00019  Score=62.74  Aligned_cols=89  Identities=20%  Similarity=0.204  Sum_probs=68.0

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +-+.|.|.++.-     .|+++|+|||.....-||- +|... +--+.+.++.+|+|+-.+-+        .|.|.-.  
T Consensus        52 Ilk~G~v~KrkG-----l~~kkR~liLT~~PrL~Yv-dp~~~-~~KGeIpls~~l~ve~k~~~--------~F~I~Tp--  114 (151)
T 1w1g_A           52 ILKMGPVDKRKG-----LFARRRQLLLTEGPHLYYV-DPVNK-VLKGEIPWSQELRPEAKNFK--------TFFVHTP--  114 (151)
T ss_dssp             EEEEEEEEEEET-----TEEEEEEEEEETTTEEEEE-ETTTT-EEEEEECCCTTCEEEESSSS--------EEEEEET--
T ss_pred             EEEEEEEEeccc-----CcceeEEEEEcCCceEEEE-cCccc-cccceEecCCCeeEEEcCCC--------EEEEECC--
Confidence            448999999431     5588999999988887675 56444 66677788899999975433        5666544  


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       ++++.|.+. ..+|..|++||+.|+..
T Consensus       115 -~RtY~~~d~-~~~AqeWv~aI~~~~~~  140 (151)
T 1w1g_A          115 -NRTYYLMDP-SGNAHKWCRKIQEVWRQ  140 (151)
T ss_dssp             -TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred             -CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence             399999997 88999999999999654

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=97.53  E-value=0.00045  Score=59.70  Aligned_cols=90  Identities=18%  Similarity=0.047  Sum_probs=64.5

Q ss_pred             cccccceeeEEEEecceeeecc----cCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC---cceEEE
Q 019858           19 IGRSFIHMRYFVLESRLLAYYK----KKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK---YHRITM   91 (335)
Q Consensus        19 ~g~q~~~~RyFVL~g~~l~~YK----~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~---~~~~~l   91 (335)
                      -|.|   -|||+|=+.+|=|=|    ++....=.-..++-+ .+..|+.-.-+    ...|.|+|++..++   ...+.|
T Consensus        31 kg~q---qR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L-~gm~V~~~e~e----~~p~~~~l~s~~~G~~~k~~i~~  102 (140)
T 3qwm_A           31 LGLH---QREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSL-YGMQVLLFENQ----YYPNGIRLTSSVPGADIKVLINF  102 (140)
T ss_dssp             TTTT---EEEEEEESSCEEEEECCC---CCCCCCCEEEECC-TTEEEEEECCS----SCTTEEEEEECCTTSCCEEEEEE
T ss_pred             cccc---ceEEEEecchhhheeecccCCCCCceEEEEEeee-cceEEEcccCC----CCceEEEEEecCCCCcceEEEEE
Confidence            3555   999999988887554    222222233344455 66777663333    37899999987644   466999


Q ss_pred             eecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           92 AAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        92 aa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +|.|.+|.++|+++|++||.+.++-
T Consensus       103 ~A~s~~ER~rwi~dL~esI~e~~em  127 (140)
T 3qwm_A          103 NAPNPQDRKKFTDDLRESIAEVQEM  127 (140)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887664

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.19  E-value=0.00097  Score=56.74  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=57.4

Q ss_pred             ceeeEEEEecceeeecccCCCCC------CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCCcceEEEeecCHH
Q 019858           24 IHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ   97 (335)
Q Consensus        24 ~~~RyFVL~g~~l~~YK~~P~~~------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~~~~~~laa~s~e   97 (335)
                      .+.|||+|=.+.|=|-+..|...      ..|++.+      .|++.--.   -...+.|.|+-+.  .+.+.++|.|.|
T Consensus        44 ~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~------~V~~~ed~---~~~~~aFeI~g~~--~~~i~v~~~s~e  112 (132)
T 1v61_A           44 KEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGM------VVNRLDEI---EGSDCMFEITGST--VERIVVHCNNNQ  112 (132)
T ss_dssp             CCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTC------BCSTTCSS---SSSCCCEEEECSS--SCEEEECCCCSH
T ss_pred             ceEEEEEEcCCeEEEEEecCCCceEEEEEEEeccee------EEEecccc---ccCccEEEEecCC--CceEEEEeCCHH
Confidence            35999999999998888877432      4566544      44442111   1367889999543  478999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 019858           98 EALIWKEKIELVID  111 (335)
Q Consensus        98 ea~~W~~a~~~Ai~  111 (335)
                      |..+||++|+.||+
T Consensus       113 E~~~Wl~~L~~~i~  126 (132)
T 1v61_A          113 DFQEWMEQLNRLTK  126 (132)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999964

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=96.61  E-value=0.0043  Score=51.50  Aligned_cols=97  Identities=9%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             eeEEEeeecccccccceeeEEEEecceeeeccc-CCCCC--------CCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858            9 GWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKK-KPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV   79 (335)
Q Consensus         9 GWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~-~P~~~--------~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i   79 (335)
                      ..|.++++++..    +.|||+|..+...+|.. +|...        ..=|+.+..|..|.+-.+-++..  ..-..|+|
T Consensus        17 t~l~K~~~~~~~----k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~--~~~~~FsI   90 (131)
T 1mai_A           17 SQLLKVKSSSWR----RERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDI--PEDRCFSI   90 (131)
T ss_dssp             EEEEEESSSSCE----EEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTS--CGGGEEEE
T ss_pred             CeEEEECCCCcc----eeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcC--CccceEEE
Confidence            467777765532    57999999877666653 33211        23356666665554422211111  13458998


Q ss_pred             EecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           80 YNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        80 yn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      .-.. +.+.+-|-|.|.+||..|+.+|+..|..
T Consensus        91 iy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~~  122 (131)
T 1mai_A           91 VFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHH  122 (131)
T ss_dssp             EESS-SCCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             EECC-CCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            8774 3689999999999999999999988654

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=96.43  E-value=0.0062  Score=58.59  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .+||.++++...+     .+.|||+|=.++|=+-|.+....-..-..+-+ .++.|++.    ..+...+.|.|.++   
T Consensus       245 i~~g~l~~~~~~~-----~~~r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L-~~l~v~~~----~~~~~~~~f~i~~~---  311 (434)
T 3mpx_A          245 LKEGTLMKVTGKN-----RRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAV-ANMKVSRP----VMEKVPYALKIETS---  311 (434)
T ss_dssp             EECCEEEEEETTE-----EEEEEEEEESSEEEEEEECTTSCEEEEEEEEC------CCC----CCTTSCSEEEEECS---
T ss_pred             EecceEEEEeCCC-----ceEEEEEEECCEEEEEEecCCCeEEEEEEEEc-CCcEEEec----CCCCCCeeEEEecC---
Confidence            3899998876433     24799999888888777554333112222333 55566532    22345688888653   


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .+.++|.|.|.+|...|+++|+.||++.
T Consensus       312 ~~~~~l~a~s~~ek~~W~~~i~~ai~e~  339 (434)
T 3mpx_A          312 ESCLMLSASSCAERDEWYGCLSRALPED  339 (434)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHC----
T ss_pred             CeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999998764

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=96.10  E-value=0.0063  Score=54.63  Aligned_cols=46  Identities=13%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEe
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLI   55 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vi   55 (335)
                      ..+-.+|||++.|.---+   +++|||||+++.|.||+.++    .+++.|.+
T Consensus        19 ~~~~~~g~l~~~~~~~~~---w~~rw~vl~~~~~~~~~~~~----~~~k~G~L   64 (228)
T 3tfm_A           19 GSPYFHSFLYMNGGLMNS---WKRRWCVLKDETFLWFRSKQ----EALKQGWL   64 (228)
T ss_dssp             --CCEEEEEEECCTTTCC---CEEEEEEEETTEEEEESSCC----CSSEEEEE
T ss_pred             CCCceEEEEeecCccccc---ceEEEEEEeCCEEEEeccCC----CcceEEEE
Confidence            345589999999755444   56999999999999998554    78888887

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=95.90  E-value=0.094  Score=51.09  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCC-CCCCcc-EEEEecCceEEeeC--Ccc-eecCceeEEEEEEe
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQ-DNQVPI-KTLLIDGNCRVEDR--GLK-THHGHMVYVLSVYN   81 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~-~~~~Pi-rs~vid~~~rVed~--Gre-~~hg~~~yvf~iyn   81 (335)
                      ++|.|..+...+ |.  ...|||+|=.++|=+=|.+.. ...--. ..+-+ .++.|++.  |.. ..+....+.|.|++
T Consensus       336 ~~G~l~~~~~~~-~~--~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l-~~~~v~~~~d~~~~~~~~~~~~~F~i~~  411 (466)
T 2pz1_A          336 YSGELTRVTQPQ-AK--SQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDM-DGLEVVDLEDGKDRDLHVSIKNAFRLHR  411 (466)
T ss_dssp             EEEEEEEECTTT-CC--EEEEEEEEETTEEEEEEECSSCTTCEEEEEEEET-TTCEEEECCSBSCCSSCCCBCEEEEEEC
T ss_pred             EeeeEEEEecCC-CC--eeEEEEEEECCEEEEEEeccccCCceEEeeeeec-cceEEEeCCCCcccccccccceeEEEEe
Confidence            778877765321 11  247888888777765554421 111112 22334 66777763  321 12223568999998


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +. ....+.|.|.|.+|-..|+++|+.|+.+.++.
T Consensus       412 ~~-~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~~  445 (466)
T 2pz1_A          412 GA-TGDSHLLCTRKPEQKQRWLKAFAREREQVQLD  445 (466)
T ss_dssp             SS-SCCEEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CC-CCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence            64 45689999999999999999999998876553

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=95.52  E-value=0.13  Score=49.47  Aligned_cols=105  Identities=21%  Similarity=0.199  Sum_probs=67.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCC-CCCccE-EEEecCceEEeeC--Ccc-eecCceeEEEEEEe
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD-NQVPIK-TLLIDGNCRVEDR--GLK-THHGHMVYVLSVYN   81 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~-~~~Pir-s~vid~~~rVed~--Gre-~~hg~~~yvf~iyn   81 (335)
                      ++|.|..+... -|.  ...|||+|=.++|=+=|.+... ..--.+ .+-+ .++.|++.  |.. ..+....+.|.|.+
T Consensus       259 ~~G~l~~~~~~-~~k--~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l-~~~~v~~~~d~~~~~~~~~~~~~F~i~~  334 (402)
T 2dfk_A          259 YTGEMAWIYQP-YGR--NQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDM-DKYEVIDIEDGRDDDFNVSMKNAFKLHN  334 (402)
T ss_dssp             EEEEEEEESST-TCC--CEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEG-GGEEEEECCSEECSSSCCEESSEEEEEE
T ss_pred             EeceEEEEecc-CCc--eEEEEEEeeCCEEEEEEeccccCCceEEeeeeec-cceEEEecCCCCccccccccceeEEEEE
Confidence            77877776431 121  2478888888777655544311 111122 2333 56777763  321 11223457899988


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      .. ....+.|.|.|.+|-..|+++|+.|+.+.++.
T Consensus       335 ~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~  368 (402)
T 2dfk_A          335 KE-TEEVHLFFAKKLEEKIRWLRAFREERKMVQED  368 (402)
T ss_dssp             SS-SSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence            64 45689999999999999999999998887664

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=95.52  E-value=0.066  Score=54.14  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=65.5

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcc-eecCceeEEEEEEecCCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLK-THHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre-~~hg~~~yvf~iyn~~~~   85 (335)
                      ++|.+......+-..   ..|||+|=.++|=+=|++ .+.-..-..+-+ .++.|++.-.. .-.....+.|.|... .+
T Consensus       408 ~~G~l~~~~~~~~~~---~~r~~fLF~d~Ll~~k~~-~~~y~~k~~i~L-~~~~v~~~~~~~~~~~~~~~~f~i~~~-~~  481 (587)
T 3ky9_A          408 IDGELKITSVERRSK---MDRYAFLLDKALLICKRR-GDSYDLKDFVNL-HSFQVRDDSSGDRDNKKWSHMFLLIED-QG  481 (587)
T ss_dssp             EEEEEEEECSSCCSC---EEEEEEEETTEEEEEEEE-TTEEEEEEEEEG-GGEEEEEC-----CCCTTCEEEEEEET-TC
T ss_pred             EEeeEEEEeccCCCc---ceEEEEEECCEEEEEEec-CCEEEeeeeech-hhceeeecCCCCcccccccceeEEEEc-CC
Confidence            688887765433323   378988888888766665 222122223333 67777774111 111235688999885 34


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      .+.++|.|.|.+|...|+++|+.||++..
T Consensus       482 ~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~  510 (587)
T 3ky9_A          482 AQGYELFFKTRELKKKWMEQFEMAISNIY  510 (587)
T ss_dssp             ---CEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence            57899999999999999999999987653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=95.52  E-value=0.057  Score=57.51  Aligned_cols=96  Identities=18%  Similarity=0.385  Sum_probs=64.8

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      +.-.|||-....+-+ .-=++.=||||...-|..||.+-...   +.|+      +++++.|.  +..-+..-++|.|+|
T Consensus       540 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~  610 (772)
T 3zvr_A          540 VIRKGWLTINNIGIM-KGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSV------DNLKLRDV--EKGFMSSKHIFALFN  610 (772)
T ss_dssp             EEEEEEEEESSSCCC----CCEEEEEEESSEEEEESSTTCCCEEEEEEC------TTEEEEEC---------CEEEEEEE
T ss_pred             ceeeeeeeecccccc-cCCCccceeeccccccccccchhhhcccccccc------cccccchh--hhccccccccccccC
Confidence            345699887442221 11245679999999999999744222   4444      57776663  211123447899998


Q ss_pred             cCCC-----cceEEEeecCHHHHHHHHHHHHHH
Q 019858           82 KKEK-----YHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        82 ~~~~-----~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      +...     .+|++|+|.|.|+...|+.+|-.|
T Consensus       611 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  643 (772)
T 3zvr_A          611 TEQRNVYKDYRQLELACETQEEVDSWKASFLRA  643 (772)
T ss_dssp             TTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             CccccccchhhhhhhhccccccchhhHHhhhhc
Confidence            8765     589999999999999999999988

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=95.37  E-value=0.064  Score=54.01  Aligned_cols=99  Identities=14%  Similarity=0.112  Sum_probs=61.1

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCcc--------------EEEEecCceEEeeCCccee
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPI--------------KTLLIDGNCRVEDRGLKTH   69 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pi--------------rs~vid~~~rVed~Gre~~   69 (335)
                      .+||.|..+..+. ..   ..|||+|=.++|=+-|++....  ...-              ..+-+ .++.|++.+.+. 
T Consensus       413 I~eG~l~~~~~~~-k~---~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L-~~l~v~e~~~d~-  486 (536)
T 3odw_A          413 VHEGPLTWRVTKD-KA---VEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRL-TSAMTREVATDH-  486 (536)
T ss_dssp             EEEEEEEEESCC-------CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEG-GGEEEEECTTCT-
T ss_pred             eeecceEEEecCC-Ce---eEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeec-ccceeecccccC-
Confidence            3788887765332 22   3788888888777666543210  0100              01222 566777754443 


Q ss_pred             cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                        +.+|+..  ........++|.|.|.+|-..||++|+.||++..
T Consensus       487 --~~ffli~--~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~  527 (536)
T 3odw_A          487 --KAFYVLF--TWDQEAQIYELVAQTVSERKNWCALITETAGSLK  527 (536)
T ss_dssp             --TEEEEEE--C---CCCEEEEECSSHHHHHHHHHHHHHHHHTSC
T ss_pred             --CceEEEe--cCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCC
Confidence              4555543  2234667899999999999999999999987653

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=95.32  E-value=0.1  Score=48.95  Aligned_cols=97  Identities=12%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccE--------------EEEecCceEEeeCCccee
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIK--------------TLLIDGNCRVEDRGLKTH   69 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pir--------------s~vid~~~rVed~Gre~~   69 (335)
                      .+||.|..+..+. .   .+.|||+|=.++|=+-|++....  ..+.+              .+-+ .++.|++..-+. 
T Consensus       260 i~eG~l~~~~~~~-~---~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l-~~~~v~e~~~~~-  333 (377)
T 3p6a_A          260 VHEGPLTWRVTKD-K---AVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRL-TSAMTREVATDH-  333 (377)
T ss_dssp             EEEEEEEEESSSS-C---EEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEG-GGEEEEECTTCT-
T ss_pred             EEECCcEEEecCC-C---eEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEec-hhhhcccccccc-
Confidence            3788887665332 2   24788888777776666553211  11111              1222 556676643332 


Q ss_pred             cCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        70 hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        +.+|  -|.....+...++|.|.|.+|-..||++|++||+.
T Consensus       334 --~~~~--~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~  372 (377)
T 3p6a_A          334 --KAFY--VLFTWDQEAQIYELVAQTVSERKNWCALITETAGS  372 (377)
T ss_dssp             --TEEE--EEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             --ceeE--EEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence              2333  33444457788999999999999999999999754

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=95.23  E-value=0.15  Score=48.05  Aligned_cols=104  Identities=13%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             eeeeEEEeeeccccc--------ccceeeEEEEecceeeecccCCCC-----C--CCccEEEEecCceEEeeCCcceecC
Q 019858            7 YEGWMVRYGRRKIGR--------SFIHMRYFVLESRLLAYYKKKPQD-----N--QVPIKTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         7 ~EGWly~~g~~~~g~--------q~~~~RyFVL~g~~l~~YK~~P~~-----~--~~Pirs~vid~~~rVed~Gre~~hg   71 (335)
                      ++|.+......+-|.        .=...||++|=..+|=+=|.++..     +  .--.|..+-=.++.|++...     
T Consensus       212 ~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~-----  286 (353)
T 1kz7_A          212 MQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK-----  286 (353)
T ss_dssp             EEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT-----
T ss_pred             eecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC-----
Confidence            788877643333331        113478887777766655555311     1  01122222235677776411     


Q ss_pred             ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +.-+.|.|.... ....+.|.|.|.+|-..|+++|+.||.++++.
T Consensus       287 ~~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~  330 (353)
T 1kz7_A          287 GDTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTSQLQA  330 (353)
T ss_dssp             TBTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence            134568888753 46789999999999999999999999988775

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=95.14  E-value=0.19  Score=48.07  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcc-eecCceeEEEEEEecCCC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLK-THHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre-~~hg~~~yvf~iyn~~~~   85 (335)
                      ++|.+......+-.   ...||++|=.++|=+-|.+. +. --++..+-=..+.|++..-. .-+....+.|.|... ..
T Consensus       236 ~~G~l~~~~~~~~~---~~~~~~fLF~d~Ll~~k~k~-~~-y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~-~~  309 (406)
T 2vrw_B          236 IDGELKITSVERRS---KTDRYAFLLDKALLICKRRG-DS-YDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED-QG  309 (406)
T ss_dssp             EEEEEEEECSSCCS---CEEEEEEEESSEEEEEEEET-TE-EEEEEEEETTTEEEEC--------CTTCEEEEEEET-TC
T ss_pred             ccccEEEEecCCCc---cceEEEEecCCEEEEEEecC-Cc-eEEEEEecccceeeeecCCCCccCCccceeeEEEec-CC
Confidence            78888766432222   24788888877776555542 22 11222222256667663111 111234588888865 34


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      .+.++|.|.|.+|...|+++|+.||.+..
T Consensus       310 ~~~~~l~a~s~~ek~~W~~~i~~ai~~~~  338 (406)
T 2vrw_B          310 AQGYELFFKTRELKKKWMEQFEMAISNIY  338 (406)
T ss_dssp             SCEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred             CceEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence            56799999999999999999999987654

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=94.28  E-value=0.18  Score=47.19  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCC---------CCCCccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQ---------DNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~---------~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      ++|-+...|.       ...|||+|=..+|=+=|.+..         ..-.--..+-+ .++.|++..-.   ...-+.|
T Consensus       249 ~eG~l~~~g~-------~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l-~~~~v~~~~d~---~~~~~~F  317 (354)
T 1dbh_A          249 MEGTLTRVGA-------KHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFM-RKVQINDKDDT---NEYKHAF  317 (354)
T ss_dssp             EEEEEEETTC-------SSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEES-CSCEEEECCCS---SSCCSEE
T ss_pred             EEeeEEEEec-------CceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEec-cceEEEeCCcc---cccCccE
Confidence            7787777741       247888888777765555421         11111234444 57777774111   1245778


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .|.++.  ...+.|.|.|.+|...|+++|+.|
T Consensus       318 ~i~~~~--~~~~~l~a~s~~ek~~W~~~i~~~  347 (354)
T 1dbh_A          318 EIILKD--ENSVIFSAKSAEEKNNWMAALISL  347 (354)
T ss_dssp             EECCTT--SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             EEecCC--CCEEEEEeCCHHHHHHHHHHHHHH
Confidence            888754  568999999999999999999999

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=94.09  E-value=0.38  Score=45.07  Aligned_cols=96  Identities=11%  Similarity=0.088  Sum_probs=55.9

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCC---------------CCCccEEEEecCceEEeeCCcceecC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD---------------NQVPIKTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~---------------~~~Pirs~vid~~~rVed~Gre~~hg   71 (335)
                      ++|.+.....++    -...||++|=.++|=+-|.+...               ..--.+..|-=.++.|++....   .
T Consensus       255 ~~G~l~~~~~~~----~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~---~  327 (368)
T 1xcg_A          255 HEGPLTWRISKD----KTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD---K  327 (368)
T ss_dssp             EEEEEEECCSSS----CCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC---S
T ss_pred             eecceEeeecCC----CeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccCC---C
Confidence            778877554322    13478888777776655544210               0000111221245667764211   1


Q ss_pred             ceeEEEEEEecC--CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           72 HMVYVLSVYNKK--EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        72 ~~~yvf~iyn~~--~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      +.+   .|....  .+...++|.|.|.+|-..|+++|+.||++
T Consensus       328 ~~f---~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          328 RAF---FIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             SEE---EEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceE---EEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            233   344332  23578999999999999999999999764

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=93.96  E-value=0.47  Score=44.89  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---------------CCccE-EEEecCceEEeeCCcceec
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---------------QVPIK-TLLIDGNCRVEDRGLKTHH   70 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---------------~~Pir-s~vid~~~rVed~Gre~~h   70 (335)
                      ++|-+.....+.    =...||++|=.++|=+-|++....               .--++ .+-+ .++.|++...+.  
T Consensus       259 ~eG~l~~~~~~~----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~~v~~~~~d~--  331 (385)
T 1txd_A          259 HEGPLVWKVNRD----KTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKL-STVLVRQVATDN--  331 (385)
T ss_dssp             EEEEEEEESSSS----CBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEG-GGEEEEECCC-C--
T ss_pred             EECcEEEEcCCC----CeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceec-ccccccccccCC--
Confidence            777776543221    124788888777776555432100               00011 1222 566777642221  


Q ss_pred             CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                       +.+|+++.  ...+...++|.|.|.+|-..|+++|++||++....
T Consensus       332 -~~~f~i~~--~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~  374 (385)
T 1txd_A          332 -KALFVISM--SDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ  374 (385)
T ss_dssp             -CEEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -ceEEEEEE--cCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence             34555443  33457889999999999999999999999887554

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=93.55  E-value=0.45  Score=41.76  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=59.7

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCC-------CccEEEEecCceEEeeCCcceecCceeEEEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ-------VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS   78 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~-------~Pirs~vid~~~rVed~Gre~~hg~~~yvf~   78 (335)
                      -+||=|+.+..+. ..   ..||++|=..+|=+=+++.....       .|+  +-+ ..+.|.+.-.+.   +.+|+++
T Consensus        72 l~eG~L~~k~~~~-~~---~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pv--i~L-~~~~vre~a~d~---~~~fli~  141 (185)
T 2lg1_A           72 VRDGSVFLKNAAG-RL---KEVQAVLLTDILVFLQEKDQKYIFASLDQKSTV--ISL-KKLIVREVAHEE---KGLFLIS  141 (185)
T ss_dssp             EEEEEEEEECTTC-CE---EEEEEEEESSEEECCEEETTEEECCCCSSSCSE--EES-SSCEEECCSSCS---SEEEEEC
T ss_pred             eeeceEEEeccCC-Ce---eeEEEEeecCEEEEEEecCCEEEEEcccCCCCe--Eee-cceEEeccCCCC---CeEEEEE
Confidence            4788887554433 33   38998888877754433311101       121  113 355566543332   4555543


Q ss_pred             EEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        79 iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .  ...+..-++|-|.|++|-..||++|+.||...
T Consensus       142 ~--~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~  174 (185)
T 2lg1_A          142 M--GMTDPEMVEVHASSKEERNSWIQIIQDTINTL  174 (185)
T ss_dssp             C--SSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             e--cCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence            3  33457889999999999999999999998765

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=92.45  E-value=0.19  Score=46.83  Aligned_cols=96  Identities=13%  Similarity=0.096  Sum_probs=57.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCc---cE-EEEecCceEEeeCCcc--eec----------
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVP---IK-TLLIDGNCRVEDRGLK--THH----------   70 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~P---ir-s~vid~~~rVed~Gre--~~h----------   70 (335)
                      ++|-|...    -|    ..||++|=.++|=+=|.+.......   .+ .+-+ .++.|++.--.  ...          
T Consensus       234 ~~G~l~~~----~~----~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l-~~l~v~~~~d~~~~~~~s~~g~~~~~  304 (346)
T 2z0q_A          234 CHGELKNN----RG----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPV-KDLTLEDLQDGEVRLGGSLRGAFSNN  304 (346)
T ss_dssp             EEEEEEET----TS----CEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEG-GGCEEEECCTTTSCCCSCC--CCSHH
T ss_pred             EeceeEEC----CC----cEEEEEECCCcEEEEEEeccCCceeeeeecCCcch-hhceeeecCCCccccCccccccccCC
Confidence            67776542    13    4788888777775555432111000   01 1223 45666664111  000          


Q ss_pred             CceeEEEEEEecC-CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           71 GHMVYVLSVYNKK-EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        71 g~~~yvf~iyn~~-~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      ...-+.|.|.... .....++|.|.|.+|-..|+++|+.||+
T Consensus       305 ~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~aie  346 (346)
T 2z0q_A          305 ERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAKE  346 (346)
T ss_dssp             HHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhhC
Confidence            1235788887643 2467899999999999999999999963

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=92.18  E-value=2.7  Score=34.04  Aligned_cols=97  Identities=18%  Similarity=0.055  Sum_probs=56.1

Q ss_pred             ceeeeEEEeeecccccccceeeEEEE-ecceeeecccCCCCCCCccE---EEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVL-ESRLLAYYKKKPQDNQVPIK---TLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL-~g~~l~~YK~~P~~~~~Pir---s~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      .+||=|..+-+  -.+...+++||+| ..-+|-..+ ++... .+.+   ..-+ .++.|+|-.-   ++.+-.+|.|--
T Consensus         9 v~eG~l~el~~--~~~k~~~~v~~FLfND~Ll~a~~-~~~~~-~~~~~~~~~~L-~~~~v~d~~d---~~~~~n~f~i~~   80 (113)
T 1zc3_B            9 VYNGDLVEYEA--DHMAQLQRVHGFLMNDCLLVATW-LPQRR-GMYRYNALYPL-DRLAVVNVKD---NPPMKDMFKLLM   80 (113)
T ss_dssp             EEEEEEEEEET--TTCCEEEEEEEEEESSEEEEEEE-ECCTT-SCEEEEEEEET-TTCEEEEECC---BTTBSSEEEEEE
T ss_pred             EEeCcEEEEcc--ccCCCCccEEEEecCCEEEEEEE-eccCc-ccEEEEEEEEc-ccCEEEECCC---CcccceEEEEEe
Confidence            37887776643  2334455775555 444444333 33221 1111   2233 3456665211   234566666654


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .   .+...+.|+|++|-..|+.+|+.|++..
T Consensus        81 ~---~~s~~~~aes~~eK~~Wl~~~~~a~~~~  109 (113)
T 1zc3_B           81 F---PESRIFQAENAKIKREWLEVLEETKRAL  109 (113)
T ss_dssp             T---TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             C---CceEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            2   3457899999999999999999998764

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=92.16  E-value=1.1  Score=41.15  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=52.9

Q ss_pred             eeeEEEEecceeeecccCCCC-C--CCccEEEEecCceEEeeCCcceecCceeEEEEEEecC--CCcceEEEeecCHHHH
Q 019858           25 HMRYFVLESRLLAYYKKKPQD-N--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK--EKYHRITMAAFNIQEA   99 (335)
Q Consensus        25 ~~RyFVL~g~~l~~YK~~P~~-~--~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~--~~~~~~~laa~s~eea   99 (335)
                      +.||++|=...|=+=|.+... .  .--.+..+-=.++.|++.-    .| ....|.|....  .....+.|.|.|.+|-
T Consensus       222 ~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~----~~-~~~~F~i~~~~~~~~~~~~~l~a~s~~ek  296 (311)
T 1nty_A          222 RERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHV----EG-DPCKFALWVGRTPTSDNKIVLKASSIENK  296 (311)
T ss_dssp             EEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCC----TT-CTTEEEEEESSSCCTTTCEEEECSSHHHH
T ss_pred             ceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEcc----CC-CCceEEEEeCCCCCCCceEEEECCCHHHH
Confidence            578888777777655544321 1  1112222222677787631    11 23457777632  2456799999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 019858          100 LIWKEKIELVIDQH  113 (335)
Q Consensus       100 ~~W~~a~~~Ai~q~  113 (335)
                      .+|+++|+.||+|.
T Consensus       297 ~~W~~~i~~~i~e~  310 (311)
T 1nty_A          297 QDWIKHIREVIQER  310 (311)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999998763

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=91.97  E-value=1.2  Score=42.47  Aligned_cols=96  Identities=11%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCC------Cc---------c-EEEEecCceEEeeCCccee
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQ------VP---------I-KTLLIDGNCRVEDRGLKTH   69 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~------~P---------i-rs~vid~~~rVed~Gre~~   69 (335)
                      .++|.|.....+.-    ...||++|=.++|=+-|++.....      .+         . ..+-+ .++.|++..-   
T Consensus       296 i~eG~l~~~~~~~~----~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l-~~~~v~~~~~---  367 (418)
T 3t06_A          296 IHEGPLTWRISKDK----TLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKL-NAVLIRSVAT---  367 (418)
T ss_dssp             EEEEEEEECCBTTB----CCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEG-GGEEEEECSS---
T ss_pred             EEeceEEEEeCCCC----eEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceec-hhceeccccc---
Confidence            37888887653321    236888877777765665431100      00         0 11223 4666665421   


Q ss_pred             cCceeEEEEEEecCC-C-cceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           70 HGHMVYVLSVYNKKE-K-YHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        70 hg~~~yvf~iyn~~~-~-~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                         .-..|.|.+... + .+.++|.|.|.+|-..|+++|+.||..
T Consensus       368 ---~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~  409 (418)
T 3t06_A          368 ---DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  409 (418)
T ss_dssp             ---CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             ---cCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence               122455555432 2 379999999999999999999999654

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=91.82  E-value=1.1  Score=41.50  Aligned_cols=102  Identities=17%  Similarity=0.272  Sum_probs=70.5

Q ss_pred             CCCCCceeeeEEEeeecccccccceeeEEEEec--c-----eeeecccCCCCC--CCccEEEEecCceEEeeCCcceecC
Q 019858            1 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLES--R-----LLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         1 ~~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g--~-----~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg   71 (335)
                      |+..+..||-+ +.+.+|.    +..||.||+-  .     .|..||+++.-.  ..+=-++-+.+.|-||.-   ...-
T Consensus         5 ~~~~~v~eg~v-k~r~~Kk----Wk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g---~~ld   76 (224)
T 3ml4_A            5 MTEAALVEGQV-KLRDGKK----WKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPA---LPYE   76 (224)
T ss_dssp             --CCCSEEEEE-EEC---C----CEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEE---EEET
T ss_pred             cccceeEEEee-eeecCCc----eeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccc---cccc
Confidence            45566788865 4455553    4599999984  1     466798776321  344556999999999962   2223


Q ss_pred             ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      +.-+++.|...   +....||++|.|++..|-..|...+++.
T Consensus        77 k~s~TlAIIc~---d~~~vLAFds~e~l~~W~~~l~~slGe~  115 (224)
T 3ml4_A           77 GLAHTLAIICL---SQAVMLGFDSHEAMCAWDTRIRYALGEV  115 (224)
T ss_dssp             TEEEEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHTSSE
T ss_pred             CcccEEEEEec---CcEEEEEeCCHHHHHHHHHHHhhccCCC
Confidence            46788888865   4566999999999999999999886654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=91.59  E-value=0.034  Score=54.17  Aligned_cols=97  Identities=19%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCC--------------C-CCcc-EEEEecCceEEeeCCcceec
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD--------------N-QVPI-KTLLIDGNCRVEDRGLKTHH   70 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~--------------~-~~Pi-rs~vid~~~rVed~Gre~~h   70 (335)
                      +||.|++.+.       .+.|||+|=..+|=+-|.++..              + .-.+ |..|-=.++.|++..-.   
T Consensus       255 ~eG~l~~~~~-------~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~---  324 (510)
T 3jzy_A          255 HSGKLYKTKS-------NKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDP---  324 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeceEEEcCC-------CcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCC---
Confidence            7777776543       2378888877777655533321              0 0111 22222245555553111   


Q ss_pred             CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +...+.|.|..+   .+.++|.|.|.+|...|+++|+.||.+..+.
T Consensus       325 ~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~  367 (510)
T 3jzy_A          325 SSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQYIDT  367 (510)
T ss_dssp             ----------------------------------------------
T ss_pred             Cccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            135678898775   3589999999999999999999998876544

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=91.08  E-value=1.5  Score=41.16  Aligned_cols=89  Identities=8%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             eeeEEEEecceeeecccCCCC----C--CCccE-EEEecCceEEeeCCcceecCceeEEEEEEecC--CCcceEEEeecC
Q 019858           25 HMRYFVLESRLLAYYKKKPQD----N--QVPIK-TLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK--EKYHRITMAAFN   95 (335)
Q Consensus        25 ~~RyFVL~g~~l~~YK~~P~~----~--~~Pir-s~vid~~~rVed~Gre~~hg~~~yvf~iyn~~--~~~~~~~laa~s   95 (335)
                      ..||++|=..+|=+=|.+...    .  .--.+ .+-+ .++.|++.-     .+..+.|.|....  .....+.|-|.|
T Consensus       229 ~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l-~~~~v~~~~-----~~~~~~F~i~~~~~~~~~~~~~l~a~s  302 (354)
T 2rgn_B          229 RERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKV-SCLGLEGNL-----QGDPCRFALTSRGPEGGIQRYVLQAAD  302 (354)
T ss_dssp             CEEEEEEESSEEEEEEECC--------CCEEEEEEEEG-GGEEEEESG-----GGCTTEEEEEEECSSSCEEEEEEEESS
T ss_pred             ceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeec-cceeeeecc-----CCCCceEEEEecCCCCCceEEEEECCC
Confidence            467777777666544443311    0  00111 1223 567777641     1233566666543  246889999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcc
Q 019858           96 IQEALIWKEKIELVIDQHQESQVS  119 (335)
Q Consensus        96 ~eea~~W~~a~~~Ai~q~~~~~~~  119 (335)
                      .+|-..|+++|..||.++.+...+
T Consensus       303 ~~ek~~W~~~i~~ai~~~~~~l~a  326 (354)
T 2rgn_B          303 PAISQAWIKHVAQILESQRDFLNA  326 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876443

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=86.26  E-value=6.1  Score=37.04  Aligned_cols=29  Identities=0%  Similarity=0.046  Sum_probs=26.1

Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      .+.+.|.|.|.+|-..|+++|+.||.+.+
T Consensus       341 ~~~~~l~A~s~~eK~~W~~~i~~~i~~~~  369 (377)
T 1foe_A          341 ERVFHLCCSSPESRKDFLKSVHSILRDKH  369 (377)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCHHHHHHHHHHHHHHhhHHh
Confidence            57899999999999999999999987654

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=85.14  E-value=2.5  Score=46.03  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCC---------CCCccEEEEecCceEEeeCCcceecCceeEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQD---------NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYV   76 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~---------~~~Pirs~vid~~~rVed~Gre~~hg~~~yv   76 (335)
                      .+||.+.+.+..       +.||++|=..+|=+=|.+...         .-.--..+-+ .++.|++..-..   ..-+.
T Consensus       445 i~eG~l~~~~~k-------~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L-~~l~V~~~~d~~---~~~~~  513 (1049)
T 3ksy_A          445 IMEGTLTRVGAK-------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFM-RKVQINDKDDTN---EYKHA  513 (1049)
T ss_dssp             CCEEEEEETTCS-------SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECC-SSCCCCCCCCSS---SCCSE
T ss_pred             EEeceEEEEccC-------ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEc-CceEEEECCCCc---cccce
Confidence            488988887632       478888887777666654211         1111122333 556666531111   34578


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      |.|..+..  ..++|.|.|.+|-.+|+++|+.+..
T Consensus       514 F~I~~~~~--~~~~L~A~S~eeK~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          514 FEIILKDE--NSVIFSAKSAEEKNNWMAALISLQY  546 (1049)
T ss_dssp             EEECCTTS--CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCC--CEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            88877643  7899999999999999999988743

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=82.12  E-value=2.3  Score=32.49  Aligned_cols=41  Identities=15%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             ceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEE
Q 019858          229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEV  270 (335)
Q Consensus       229 ~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~i  270 (335)
                      .+...-.|+|||++||+.|.|++. -.+|...+...++++.-
T Consensus         3 ~~~~~~~i~ap~~~V~~~l~d~~~-~~~w~p~~~~~~~~~~~   43 (147)
T 2d4r_A            3 EVRAERYIPAPPERVYRLAKDLEG-LKPYLKEVESLEVVARE   43 (147)
T ss_dssp             EEEEEEEESSCHHHHHHHHHCHHH-HGGGCTTEEEEEEEEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHhChhh-hhhhcccccEEEEEEeC
Confidence            356678899999999999999973 45898777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d2psoa1	197	d.129.3.2 (A:908-1104) Star-related lipid transfer	9e-13
d1ln1a_	203	d.129.3.2 (A:) Phosphatidylcholine transfer protei	2e-12
d1em2a_	214	d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu	5e-12
d1jssa_	199	d.129.3.2 (A:) Cholesterol-regulated Start protein	2e-10
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	8e-07
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	1e-06
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	1e-05
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	2e-05
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	2e-05
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	4e-05
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	8e-05
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	1e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	3e-04
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	3e-04
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	6e-04
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	0.001
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	0.001
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	0.001

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 9e-13
 Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWD 258
           K W      +   +  +         +  +  KA   VEA    +   V+     R+ WD
Sbjct: 19  KGWVTCSSTDNTDLAFK----KVGDGNPLKLWKASVEVEAPPSVVLNRVLR---ERHLWD 71

Query: 259 CSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309
             F    +VE +D  T I  + L           RD   +R W+ +     
Sbjct: 72  EDFVQWKVVETLDRQTEIYQYVL---NSMAPHPSRDFVVLRTWKTDLPKGM 119

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 10/132 (7%)

Query: 189 QNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM 248
             +   A +   W+LL   +G+ I+          ++     K  GV+E     +   + 
Sbjct: 11  AELQQPALAGADWQLLVETSGISIYRL-----LDKKTGLYEYKVFGVLEDCSPTLLADIY 65

Query: 249 SMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308
                R +WD   +   L E+      ++Y  +    +P  +  RD  Y+R  R  D   
Sbjct: 66  MDSDYRKQWDQYVK--ELYEQECNGETVVYWEV---KYPFPMSNRDYVYLRQRRDLDMEG 120

Query: 309 YGSMRTVVHNQD 320
                 +  +  
Sbjct: 121 RKIHVILARSTS 132

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 5e-12
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWF 286
            +       +    E +++ V+        W+ +     +++ V+ +T I Y        
Sbjct: 51  GKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAA- 109

Query: 287 PMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDM 321
              V PRD   VR   R  D    S     H+   
Sbjct: 110 GGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP 144

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 18/139 (12%), Positives = 46/139 (33%), Gaps = 7/139 (5%)

Query: 181 ELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASC 240
            + + L N  I   +     WR+ +    + ++                 KA GV++   
Sbjct: 2   SISTKLQNTLIQYHSIEEDEWRVAKKAKDVTVWR-----KPSEEFNGYLYKAQGVMDDVV 56

Query: 241 EEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRY 300
             + + +      R +WD       ++E  + +  ++ +          + PR+     Y
Sbjct: 57  NNVIDHIRPGP-WRLDWDRLMTSLDVLEHFEENCCVMRYTTA-GQLLNIISPREFVDFSY 114

Query: 301 WRRNDDGSYGSMRTVVHNQ 319
               ++G      +V  ++
Sbjct: 115 TVGYEEGLLSCGVSVEWSE 133

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 8e-07
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 3   SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE 62
           S V+  G+ V+ G           RYF L+   + Y+K + +   + +  L         
Sbjct: 1   SAVIKAGYCVKQGAVMKNW---KRRYFQLDENTIGYFKSELEKEPLRVIPLK---EVHKV 54

Query: 63  DRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQ 114
               ++       +  +      ++   + A + +E   W + +   I   +
Sbjct: 55  QECKQSDIMMRDNLFEIVTTSRTFY---VQADSPEEMHSWIKAVSGAIVAQR 103

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR 60
           M  K + EG++V+ G      +     + VL    + +YKKK  ++  P   + + G+  
Sbjct: 1   MEPKRIREGYLVKKGSV---FNTWKPMWVVLLEDGIEFYKKKSDNS--PKGMIPLKGSTL 55

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
                       +  + +      K       A  ++E   W   I   I   +  +
Sbjct: 56  TSPCQDFGKRMFVFKITT-----TKQQDHFFQAAFLEERDAWVRDINKAIKCIEGLE 107

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS   YEG + + G           R+FVL+           + +      + +     V
Sbjct: 5   SSGRSYEGILYKKGAFMKPW---KARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAV 61

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112
                       V   + ++ K         A ++  A  W ++I+  +  
Sbjct: 62  APGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSS 112

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 4   KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVED 63
            +V EGW+ + G           RYF+L++       K+   +    +   ++     + 
Sbjct: 6   AIVKEGWLHKRGEY---IKTWRPRYFLLKNDGTFIGYKERPQDV-DQREAPLNNFSVAQC 61

Query: 64  RGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117
           + +KT        +    +       T      +E   W   I+ V D  ++ +
Sbjct: 62  QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQE 115

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 2   SSKVVYEGWMVR------YGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLI 55
            +   +EG++ R        ++   RS+    Y   ++  +++YK +      P  T   
Sbjct: 5   GAGEGHEGYVTRKHEWDSTTKKASNRSW-DKVYMAAKAGRISFYKDQKGYKSNPELTFRG 63

Query: 56  DGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112
           + +  +++  ++    +      +  K        + A +  E   W   ++   D 
Sbjct: 64  EPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 120

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 1   MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVL-ESRLLAYYKKKPQDNQVPIKTLLIDGNC 59
           +S  VV +G++ + G ++  +++  +R FVL +     +Y    ++   P+    + G+ 
Sbjct: 7   LSGTVVKQGYLAKQGHKR--KNW-KVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSL 63

Query: 60  --RVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109
              +ED G+ T     V         +      + A +  E   W E I+ +
Sbjct: 64  VSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 115

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 11/115 (9%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS + + G++   G + + + +    + +++     +     ++ +   + LL      V
Sbjct: 5   SSGMKHSGYLWAIG-KNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTV 63

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116
           +    +          +   + +       A+ + Q+ ++W + +     Q  + 
Sbjct: 64  DYTDPQPGLEGGRAFFNAVKEGDTVI---FASDDEQDRILWVQAMYRATGQSHKP 115

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 11/109 (10%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 3   SKVVYEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
             V+  G++ +  +           R+  L   +  YY       Q     +        
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 161

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110
                    G       +    ++ ++    A + ++A  W ++++ ++
Sbjct: 162 NT---LRKDGKKDCCFEICAPDKRIYQ--FTAASPKDAEEWVQQLKFIL 205

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 5   VVYEGWMVRYGR-RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVED 63
           V+ +G++ +  +      S    R+ V+   L  YY    + ++ P  T LI G      
Sbjct: 1   VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYY--ANEKSKQPKGTFLIKGYSVRMA 58

Query: 64  RGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112
             L+               +  Y      A +  EA  W ++I  ++  
Sbjct: 59  PHLRRDSKKESCFELTSQDRRTYE---FTATSPAEARDWVDQISFLLKD 104

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 4/112 (3%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKK-KPQDNQVPIKTLLIDGNCR 60
           SS  +  GW+ +  +R I +++   RYFVL ++ L YYK  +    Q  +          
Sbjct: 5   SSGPIKMGWLKK--QRSIVKNW-QQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61

Query: 61  VEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112
             +          +   S    +       + A +  E   W + +  V   
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS 113

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 5   VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVE-D 63
           ++ +G +++ G R+       +R F+L       +   P   + P+  + + G      +
Sbjct: 2   IIKQGCLLKQGHRRKNW---KVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVE 58

Query: 64  RGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110
                       +  +    E ++   + A   +E   W + I++  
Sbjct: 59  SNSNGRKSEEENLFEIITADEVHY--FLQAATPKERTEWIKAIQMAS 103

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 2   SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
           SS +V   W+   G  K         + VL+  +L  YK +   N   + T+L++    +
Sbjct: 5   SSGIVMADWLKIRGTLK----SWTKLWCVLKPGVLLIYKTQ--KNGQWVGTVLLNACEII 58

Query: 62  EDRGLK-------THHGHMVYVLSVYNKKEKYHRIT---------MAAFNIQEALIWKEK 105
           E    K        H            K E    IT         + A +  +   W + 
Sbjct: 59  ERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDA 118

Query: 106 IELVIDQHQES 116
           +EL +     S
Sbjct: 119 LELALKSGPSS 129

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 3   SKVVYEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRV 61
             V+  G++ +  +           R+  L   +  YY               IDG    
Sbjct: 7   PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ--QKGEFAIDGYDVR 64

Query: 62  EDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110
            +  L+               K  Y      A + ++A  W ++++ ++
Sbjct: 65  MNNTLRKDGKKDCCFEICAPDKRIYQ---FTAASPKDAEEWVQQLKFIL 110

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 15/115 (13%)

Query: 6   VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRG 65
           V  GW+ +   +  G+     R+   +   ++YY  + +     I  L            
Sbjct: 2   VKSGWLDKLSPQ--GKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPL----------SA 49

Query: 66  LKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSN 120
           + T          V   +  +          +E   W   +   +     +  S 
Sbjct: 50  ISTVRVQGDNKFEVVTTQRTFV---FRVEKEEERNDWISILLNALKSQSLTSQSQ 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d2psoa1	197	Star-related lipid transfer protein 13 {Human (Hom	99.77
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	99.71
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	99.7
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	99.67
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.61
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.6
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.57
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.54
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.54
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.53
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.53
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.53
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.52
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.51
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.49
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.48
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.48
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.45
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.45
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.44
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.44
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.43
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.43
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.39
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.38
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.36
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.28
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.28
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.26
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.25
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.2
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.2
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.47
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.36
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	97.96
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.86
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	97.74
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.16
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.1
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.07
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	96.8
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	96.39
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	95.76
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	86.13

>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.1e-19  Score=151.56  Aligned_cols=114  Identities=21%  Similarity=0.212  Sum_probs=100.0

Q ss_pred             CCcEEEEeecCeEEEEEe-cccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcccEE
Q 019858          199 KHWRLLQCQNGLRIFEEL-LEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL  277 (335)
Q Consensus       199 ~~W~l~~~~nGlrif~e~-~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~HtdIv  277 (335)
                      ..|++...++|++|+... .+     .+...++|+++.|+|+|++|+..+|.   .|.+||..+.++++||++|+|++|+
T Consensus        19 ~GW~~~~~~~gi~V~~kk~~~-----gs~~~~~k~~~~i~a~~~~vl~~~l~---~r~~Wd~~~~~~~~le~~~~~~~i~   90 (197)
T d2psoa1          19 KGWVTCSSTDNTDLAFKKVGD-----GNPLKLWKASVEVEAPPSVVLNRVLR---ERHLWDEDFVQWKVVETLDRQTEIY   90 (197)
T ss_dssp             CSCEEECCSSSCEEEEECCCS-----SCCCCEEEEEEEESSCHHHHHHHHHH---CGGGTCTTBCCCEEEEEEETTEEEE
T ss_pred             CCceEEecCCCeEEEEEecCC-----CCCeEEEEEEEEEcCCHHHHHHHHHH---hHHHHhhhhheEEEEEEcCCCCEEE
Confidence            469999999999996543 33     23346999999999999999988874   3999999999999999999999999


Q ss_pred             EEEEeeCcccCcccCceeEEEEeeEec-CCCcEEEEEeeeechhhhh
Q 019858          278 YHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYGSMRTVVHNQDMYE  323 (335)
Q Consensus       278 y~~~~p~wlp~~~~~RDlv~~RyWrR~-~DGsYvIl~~Sv~H~~~~~  323 (335)
                      |..++++|   .+++||||+.|.|++. +||+++|++.|++|+.++.
T Consensus        91 y~~~~~p~---pvs~RD~v~~~~~~~~~~~~~~~i~~~Sv~~~~~p~  134 (197)
T d2psoa1          91 QYVLNSMA---PHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL  134 (197)
T ss_dssp             EEEECCSS---SCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC
T ss_pred             EEEccCCC---cccceeEEEEEEEEEeCCCCEEEEEEEeccccCCCC
Confidence            99999655   5899999999999996 7999999999999998764

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.4e-17  Score=141.47  Aligned_cols=120  Identities=22%  Similarity=0.306  Sum_probs=102.4

Q ss_pred             cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeee-cCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCcc
Q 019858          196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT  274 (335)
Q Consensus       196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~-aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Ht  274 (335)
                      .+...|++...+||++||....+     .+....+|++++|. +||+.+|++|++++ .|.+||..+.  +++|.+|+++
T Consensus        18 ~~~~~W~~~~~~~gv~vy~~~~~-----~~~~~~~k~~~~i~~~~~~~~~~~l~d~~-~~~~Wd~~~~--~~~~~~~~~~   89 (203)
T d1ln1a_          18 LAGADWQLLVETSGISIYRLLDK-----KTGLYEYKVFGVLEDCSPTLLADIYMDSD-YRKQWDQYVK--ELYEQECNGE   89 (203)
T ss_dssp             CTTTTCEEEEEETTEEEEEEEET-----TTTEEEEEEEEEETTSCHHHHHHHHHCHH-HHHHHCTTEE--EEEEEEETTE
T ss_pred             cCCCCCEEEEecCCEEEEEEecC-----CCCcEEEEEEEEEcCCCHHHHHHHHcCHh-Hhhhhcccce--EEEEEccCCc
Confidence            34668999999999999997655     13335899999995 89999999999998 5999999886  5899999999


Q ss_pred             cEEEEEEeeCcccCcccCceeEEEEeeEecCC---CcEEEEEeeeechhhhhhcc
Q 019858          275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD---GSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       275 dIvy~~~~p~wlp~~~~~RDlv~~RyWrR~~D---GsYvIl~~Sv~H~~~~~~t~  326 (335)
                      +|+|..+++.|   .+++||+|+.|.|++.+|   +.|+|+..|+.||+++....
T Consensus        90 ~i~y~~~~~p~---p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~  141 (203)
T d1ln1a_          90 TVVYWEVKYPF---PMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSG  141 (203)
T ss_dssp             EEEEEEECCCT---TSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTT
T ss_pred             EEEEEEccccc---ccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCC
Confidence            99999999655   479999999999998544   57999999999999976544

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.3e-17  Score=138.69  Aligned_cols=118  Identities=14%  Similarity=0.227  Sum_probs=97.8

Q ss_pred             cccCCcEEEEeecCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeCccc
Q 019858          196 FSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA  275 (335)
Q Consensus       196 ~~~~~W~l~~~~nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~Htd  275 (335)
                      ++...|++....||++||....+     .+...++|+.++|+++|+.||+.|++.+ .|.+||..+..+++||.+|++++
T Consensus        17 ~~~~~W~~~~~~~~v~v~~~~~~-----~~~~~~~r~~~~i~~~~~~v~~~l~d~~-~~~~Wd~~~~~~~~le~~~~~~~   90 (199)
T d1jssa_          17 IEEDEWRVAKKAKDVTVWRKPSE-----EFNGYLYKAQGVMDDVVNNVIDHIRPGP-WRLDWDRLMTSLDVLEHFEENCC   90 (199)
T ss_dssp             SCGGGCEEEEEETTEEEEEEECS-----SSSSEEEEEEEEESSCHHHHHHHHSSST-THHHHCSSEEEEEEEEECSTTEE
T ss_pred             cCcCCCeEEEecCCEEEEEEEcC-----CCCcEEEEEEEEeCCCHHHHHHHHhChh-hhhhcccchheEEEEEEcCCCcE
Confidence            35568999999999999987654     1334689999999999999999999997 59999999999999999999999


Q ss_pred             EEEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhh
Q 019858          276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYE  323 (335)
Q Consensus       276 Ivy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~  323 (335)
                      |+|+.+...+ |+.+++||+|+.|+|...+||.+ ++.  +.|+.++.
T Consensus        91 i~~~~~~~~~-~~~v~~RD~v~~~~~~~~~~~~~-~~~--~~~~~~p~  134 (199)
T d1jssa_          91 VMRYTTAGQL-LNIISPREFVDFSYTVGYEEGLL-SCG--VSVEWSET  134 (199)
T ss_dssp             EEEEEECCBT-TTTBCCEEEEEEEEEEEETTEEE-EEE--EECCCCCC
T ss_pred             EEEEEEcccC-CCCcCCcEEEEEEEEEEcCCcEE-EEE--EecCCCCC
Confidence            9999987543 34689999999999999988844 333  34444443

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.9e-17  Score=138.62  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=98.5

Q ss_pred             CCcEEEEee-cCeEEEEEecccCCCCccCccceEEeeeeecCHHHHHHHh-hccCCCcccccceeeeeeEEEEEeCcccE
Q 019858          199 KHWRLLQCQ-NGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV-MSMDGTRYEWDCSFQYGSLVEEVDGHTAI  276 (335)
Q Consensus       199 ~~W~l~~~~-nGlrif~e~~~~~~~~~~~~~~~kavgvV~aspe~IFe~l-m~~d~~R~eWD~~~~~~~vVE~iD~HtdI  276 (335)
                      ..|++.... +|..++....+      +.+.++|+.++|++||+.||..| .+++ .|.+||..+..+++||++|++++|
T Consensus        28 ~~W~~~~~~~~~~~~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~~~~d~e-~~~~Wd~~~~~~~ile~~~~~~~i  100 (214)
T d1em2a_          28 ENWKFEKNNEYGDTVYTIEVP------FHGKTFILKTFLPCPAELVYQEVILQPE-RMVLWNKTVTACQILQRVEDNTLI  100 (214)
T ss_dssp             GGCEEEEECTTCCEEEEEEET------TTEEEEEEEEEESSCHHHHHHHTTTCHH-HHTTTCTTEEEEEEEEEETTTEEE
T ss_pred             CCCeEEEEcCCEEEEEEEecC------CCcEEEEEEEEEeCCHHHHHHHHHhChH-HHHHHHHHHhheEEEEEcCCCceE
Confidence            369987655 55666666554      33568999999999999999755 4676 599999999999999999999999


Q ss_pred             EEEEEeeCcccCcccCceeEEEEeeEecCCCcEEEEEeeeechhhhhhcc
Q 019858          277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYGSMRTVVHNQDMYELTW  326 (335)
Q Consensus       277 vy~~~~p~wlp~~~~~RDlv~~RyWrR~~DGsYvIl~~Sv~H~~~~~~t~  326 (335)
                      +|+.+.+.+ |+.+++||||+.|.|+..+|| ++|+..|+.|+.++....
T Consensus       101 ~~~~~~~~~-~~~vs~RD~v~~~~~~~~~~~-~~~~~~s~~~~~~p~~~~  148 (214)
T d1em2a_         101 SYDVSAGAA-GGVVSPRDFVNVRRIERRRDR-YLSSGIATSHSAKPPTHK  148 (214)
T ss_dssp             EEEEECCBT-TTTBCCEEEEEEEEEEECSSE-EEEEEEECCCTTSCCCTT
T ss_pred             EEEEecccC-CCCCCCcEEEEEEEEEEcCCc-EEEEEEeeccccccCCCC
Confidence            999998764 567999999999999998766 678888999998876544

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-15  Score=117.36  Aligned_cols=103  Identities=21%  Similarity=0.287  Sum_probs=78.1

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      .+.+.|||||++.|...-+   +++|||||+++.|.||+. +.+. .|.+.+.|+.++.++. ..+ ......|+|.|.+
T Consensus         5 ~s~~~k~G~L~K~~~~~k~---WkkR~fvL~~~~l~y~~~-~~~~-~~~~~~~l~~~~~~~~-~~~-~~~~~~~~f~l~~   77 (118)
T d1v89a_           5 SSGPIKMGWLKKQRSIVKN---WQQRYFVLRAQQLYYYKD-EEDT-KPQGCMYLPGCTIKEI-ATN-PEEAGKFVFEIIP   77 (118)
T ss_dssp             SSCEEEEEEEEEECSSSSC---EEEEEEEEETTEEEEESS-SSCC-SCSEEECSTTEEEEEE-CCC-SSCCCCCEEEEEE
T ss_pred             CCCCeEEEEEEEECCCCCC---cEEEEEEEECCEEEEecc-cCcc-cccceeccCceEEEEe-ccc-cccCCCcEEEEec
Confidence            3556799999998866544   569999999999998864 4344 8999999966554443 222 2335568899987


Q ss_pred             cCCC-----cceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           82 KKEK-----YHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        82 ~~~~-----~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      ....     .+.+.|.|.|.||+..||+||+.|+.
T Consensus        78 ~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          78 ASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             SCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            6533     36799999999999999999999943

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.6e-15  Score=115.57  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=78.0

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .++||||+.+..+-++   ++|||||.++.|.||+.+. + ..|.+.+.|.+ |.|+..  ..-.++..|+|.|..+..+
T Consensus         2 iK~G~L~k~~~~~k~W---~kR~fvL~~~~L~yy~~~~-~-~~~~~~i~l~~-~~v~~~--~~~~~~~~~~f~i~~~~~~   73 (101)
T d2fjla1           2 IKNGILYLEDPVNHEW---YPHYFVLTSSKIYYSEETS-S-DLLRGVLDVPA-CQIAIR--PEGKNNRLFVFSISMPSVA   73 (101)
T ss_dssp             CEEEEEEEEETTTTEE---EEEEEEEETTEEEECCCCS-C-TCCCEEECSTT-CEEEEE--TTCSSSCSCEEEEECTTTS
T ss_pred             ceEEEEEEEcCCCCCC---eEEEEEEECCEEEEEeccc-c-ceecceEEcCC-ceeEee--eeecccccceeEEeccccc
Confidence            3799999999766555   4999999999999997543 3 48999999965 445442  1223355689999998888


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      .+.+.|+|.|.+|+..|++||++|+.
T Consensus        74 ~~~~~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          74 QWSLDVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             SCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            88999999999999999999999953

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.6e-15  Score=116.94  Aligned_cols=99  Identities=19%  Similarity=0.347  Sum_probs=77.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC-
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK-   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~-   83 (335)
                      +..+|||++.+.+ ++...+++|||||+++.|.|||.+ .+ ..|.+.+.+ .+|.|+.-.  ...-+-.|+|.|.++. 
T Consensus         3 vik~GwL~k~~~~-~~~~~WkkRwFvL~~~~L~yyk~~-~~-~~~~~~i~l-~~~~v~~~~--~~~~~~~~~F~l~~~~~   76 (111)
T d2dyna_           3 VIRKGWLTINNIG-IMKGGSKEYWFVLTAENLSWYKDD-EE-KEKKYMLSV-DNLKLRDVE--KGFMSSKHIFALFNTEQ   76 (111)
T ss_dssp             EEEEEEEEETTCC-TTTTSSEEEEEEEESSEEEEESST-TC-CCEEEEEEC-TTEEEEEEC--CCSTTCSEEEEEEESSC
T ss_pred             EEEEeeEEEECCC-CCcCCceEEEEEEECCEEEEEcch-hh-ccccccccc-ccceeEeec--cccccccccEEeeeccc
Confidence            4589999987643 445667899999999999999864 33 489999999 566666532  2222456899999764 


Q ss_pred             ----CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 ----EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ----~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                          .+.+++.|.|.|.||+.+||.||..|
T Consensus        77 ~~~~~~~r~~~l~a~s~ed~~~W~~al~~A  106 (111)
T d2dyna_          77 RNVYKDYRQLELACETQEEVDSWKASFLRA  106 (111)
T ss_dssp             SCSBTTBSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             cccccCceeEEEECCCHHHHHHHHHHHHHh
Confidence                45688999999999999999999999

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.9e-15  Score=113.05  Aligned_cols=97  Identities=20%  Similarity=0.245  Sum_probs=77.5

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      -+.+||||++.|...-+   +++|||||+++.|.|||.. .+. .|++++-|.++..|...+.+    +..++|.|... 
T Consensus         3 ~~~KeG~L~K~~~~~k~---Wk~R~fvL~~~~L~yy~~~-~~~-~~~g~i~L~~~~~v~~~~~~----~~~~~F~i~~~-   72 (100)
T d1faoa_           3 LGTKEGYLTKQGGLVKT---WKTRWFTLHRNELKYFKDQ-MSP-EPIRILDLTECSAVQFDYSQ----ERVNCFCLVFP-   72 (100)
T ss_dssp             TTCEEEEEEEECSSSCC---EEEEEEEEETTEEEEESST-TCS-SCSEEEEGGGCCEEEEECSS----SSSSEEEEEET-
T ss_pred             CccEEEEEEEeCCCCCC---ceEEEEEEECCEEEEEecc-CCc-cCceEEechheEEEEecccc----ccccccccccC-
Confidence            45699999999865444   4599999999999988754 444 89999999777667664332    23467899875 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                        .+.+.|.|.|.+|+..|++||+.||.|
T Consensus        73 --~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          73 --FRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             --TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             --CeEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence              478999999999999999999999876

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1e-14  Score=110.98  Aligned_cols=102  Identities=17%  Similarity=0.289  Sum_probs=81.0

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      |++.+||||++.|...-++   ++|||||+++.|.||+.. .+ ..|.+++-++.++.+.+......+ +..+.|.|..+
T Consensus         1 s~vik~G~L~K~~~~~~~W---kkr~fvL~~~~l~yy~~~-~~-~~~~~~i~l~~~~~~~~~~~~~~~-~~~~~f~i~~~   74 (103)
T d1eaza_           1 SAVIKAGYCVKQGAVMKNW---KRRYFQLDENTIGYFKSE-LE-KEPLRVIPLKEVHKVQECKQSDIM-MRDNLFEIVTT   74 (103)
T ss_dssp             CCCSEEEEEEEECTTTCCE---EEEEEEECSSEEEEESST-TC-SSCSEEEEGGGCCEEEECTTHHHH-TCSSEEEEECS
T ss_pred             CceEEEEEEEEECCCCCCe---eEEEEEEECCEEEEEecc-cC-cccceEEEccceEEeecccccccc-ccceEEEEEeC
Confidence            4677999999998666555   499999999999988633 33 489999999999988876433333 23467777753


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                         ++.+.|.|.|.+|+..|+.||+.||-++
T Consensus        75 ---~~~~~~~a~s~~e~~~W~~aI~~ai~~~  102 (103)
T d1eaza_          75 ---SRTFYVQADSPEEMHSWIKAVSGAIVAQ  102 (103)
T ss_dssp             ---SCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             ---CEEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence               5789999999999999999999998765

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=111.92  Aligned_cols=103  Identities=22%  Similarity=0.293  Sum_probs=81.4

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      ..+-+||||++.|.+.-+++   +|||||.++.|.||+..+ +. .|.+++-|.+++.|+.-...   ++..++|.|.+.
T Consensus         3 ~~~ikeG~L~k~~~~~k~Wk---kryfvL~~~~L~~y~~~~-~~-~p~~~i~l~~~~~~~~~~~~---~~~~~~f~l~~~   74 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWK---PMWVVLLEDGIEFYKKKS-DN-SPKGMIPLKGSTLTSPCQDF---GKRMFVFKITTT   74 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCE---EEEEEEETTEEEEESSTT-CS-SCSEEEESSSCCEESSCCSS---CCSSSEEEEEET
T ss_pred             CCceEEEEEEEeCCCCCCce---EEEEEEECCEEEEEecCC-cc-ccceEEECccCeEEeeeccc---CCcceEEEEecC
Confidence            34569999999987776766   999999999999997554 33 79999999887777653222   234567888775


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                        +.+.+.|.|.|.+|+..|+.||+.||++...
T Consensus        75 --~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~~~  105 (113)
T d1plsa_          75 --KQQDHFFQAAFLEERDAWVRDINKAIKCIEG  105 (113)
T ss_dssp             --TTEEEEEECSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             --CCeEEEEECCCHHHHHHHHHHHHHHHHhCcC
Confidence              4678999999999999999999999887533

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=109.24  Aligned_cols=102  Identities=13%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeC-CcceecCceeEEEEEEecC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~-Gre~~hg~~~yvf~iyn~~   83 (335)
                      +.+||||++.+...-+++   +|||||.++.+.+|+.++.....|.+++.+.+++.|+.. ..........++|.|..+ 
T Consensus         2 v~k~G~L~k~~~~~k~Wk---kR~fvL~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   77 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWK---VRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-   77 (104)
T ss_dssp             EEEEEEEEEECTTTCCEE---EEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECT-
T ss_pred             EEEEEEEEEECCCCCCcE---EEEEEEECCeeEEEEEcCccccCccceEeecceEEEEeccCcccccccCccEEEEECC-
Confidence            358999999986655545   999999987655443343334489999998666666543 222222345667888765 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                       ..+.+.|.|.|.+|+..||+||+.||+
T Consensus        78 -~~~~~~~~a~s~~e~~~W~~ai~~a~r  104 (104)
T d2i5fa1          78 -DEVHYFLQAATPKERTEWIKAIQMASR  104 (104)
T ss_dssp             -TCCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHHHhC
Confidence             357799999999999999999999963

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-14  Score=112.57  Aligned_cols=105  Identities=15%  Similarity=0.193  Sum_probs=73.2

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecce-eeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRL-LAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~-l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      +.+.++|||++.|.+..  .-+++|||||+++- +.||+..+.+. ..|.+++.++.+..+...-.+...++ .+.|.|+
T Consensus         6 ~~~~~~G~L~K~g~~~~--k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~-~~~~~i~   82 (126)
T d1wi1a_           6 SGMKHSGYLWAIGKNVW--KRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGG-RAFFNAV   82 (126)
T ss_dssp             CCEEEEEEEEEECSSSC--CSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSC-SSEEEEE
T ss_pred             CCCcEEEEEEEECCCCC--CCceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeecccccccccc-ceeEEec
Confidence            45669999999986532  23669999998653 33444444333 68999999966665554333333333 3345565


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .   +.+.+.|.|.|.+|+..||+||+.|+.|.
T Consensus        83 ~---~~r~~~f~A~s~~e~~~Wv~al~~a~~~~  112 (126)
T d1wi1a_          83 K---EGDTVIFASDDEQDRILWVQAMYRATGQS  112 (126)
T ss_dssp             C---SSCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred             c---CCeEEEEEECCHHHHHHHHHHHHHHHHhh
Confidence            4   46789999999999999999999997653

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.7e-14  Score=112.07  Aligned_cols=100  Identities=20%  Similarity=0.326  Sum_probs=72.2

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe--
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN--   81 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn--   81 (335)
                      .+.+|||||+.|.+.-+   +++|||||+++.|.||+..+ + ..|.+++-|+.++.++....+     ..++|.+..  
T Consensus         4 np~keG~L~K~~~~~k~---WkrR~fvL~~~~L~yy~~~~-~-~~~~g~i~L~~~~v~~~~~~~-----~~~~~~~~~~~   73 (127)
T d1fgya_           4 NPDREGWLLKLGGRVKT---WKRRWFILTDNCLYYFEYTT-D-KEPRGIIPLENLSIREVLDPR-----KPNCFELYNPS   73 (127)
T ss_dssp             SCSEEEEEEEECSSSCC---EEEEEEEEETTEEEEESSTT-C-SSCSEEEECTTCEEEEECCSS-----CSSEEEEECSS
T ss_pred             CCceEEEEEEECCCCCC---cEEEEEEEECCEEEEEccCC-C-ccccceEeCCCeEEEEccCCC-----CCceEEEeccc
Confidence            46899999999876544   45999999999999997654 3 479999999654444332111     122333321  


Q ss_pred             -----------------cCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           82 -----------------KKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        82 -----------------~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                                       .....+.+.|.|.|.+|+..|+.||+.||++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~  122 (127)
T d1fgya_          74 HKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD  122 (127)
T ss_dssp             STTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHccC
Confidence                             12345678899999999999999999998763

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=113.73  Aligned_cols=100  Identities=19%  Similarity=0.352  Sum_probs=73.1

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      .+.+.++|||.+.+.    +.-+++|||||+++.|.|||. |.+. .|.+++.|. +|.|++...+.    .-+.|.|..
T Consensus         5 ~~~~~~~GwLkk~~~----~k~WkkRwfvL~~~~L~yyk~-~~~~-~~~g~i~L~-~~~v~~~~~~~----~~~~f~i~~   73 (130)
T d1v88a_           5 SSGIVMADWLKIRGT----LKSWTKLWCVLKPGVLLIYKT-QKNG-QWVGTVLLN-ACEIIERPSKK----DGFCFKLFH   73 (130)
T ss_dssp             SSSCCEEEEEEECCS----SSSCEEEEEEEETTEEEEESC-SSSC-CCCEEEECS-SCEECCCCTTT----SSCEEEEEC
T ss_pred             CCCCeEeCeEEeCCC----CCCceEEEEEEeCCEEEEEcC-CCCC-cceeEEECC-CeEEEEccccC----CCceEEEEc
Confidence            345679999966543    234779999999999999985 4444 899999994 56666543332    345677754


Q ss_pred             cC---------------------CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           82 KK---------------------EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        82 ~~---------------------~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      ..                     .+.+.+.|.|.|.+|+..||+||+.||..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_          74 PLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             TTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CCCcceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhhc
Confidence            22                     23445779999999999999999999643

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4e-14  Score=109.68  Aligned_cols=99  Identities=16%  Similarity=0.173  Sum_probs=73.0

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEe
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN   81 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn   81 (335)
                      ++.+.+||||++++...-+   +++|||||+++.|.|||.. .+. .|...+.|.+ +.+.....+.   +.-++|.|..
T Consensus         5 ~~~~~~~G~L~k~~~~~~~---W~kr~~vL~~~~L~~~k~~-~~~-~~~~~i~l~~-~~~~~~~~~~---~~~~~F~i~~   75 (109)
T d1wgqa_           5 SSGSTMSGYLYRSKGSKKP---WKHLWFVIKNKVLYTYAAS-EDV-AALESQPLLG-FTVTLVKDEN---SESKVFQLLH   75 (109)
T ss_dssp             CCSCSCEEEEEEESSTTSC---CEEEEEEEETTEEEEESCT-TCS-SCSEEEECSS-EEEEECCCSS---CSSSEEEEEE
T ss_pred             CCCCcEEEEEEEECCCCCC---ceEEEEEEeCCEEEEeccc-ccc-ccccccccce-eeeeeccccc---ccceeeeeec
Confidence            4567799999998765544   5699999999999988753 333 6777777744 4444433333   2346777765


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      +  ..+.+.|.|.|.+|+.+||+||+.||.
T Consensus        76 ~--~~~~~~f~a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          76 K--GMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             T--TEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             c--cceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            3  456899999999999999999999954

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-14  Score=110.59  Aligned_cols=103  Identities=20%  Similarity=0.302  Sum_probs=76.8

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecc-eeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEE
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV   79 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~i   79 (335)
                      .+.+||||++.|...-+   +++|||||+++ +|.||++++...   ..||....+..+..+....      ...+.|.|
T Consensus         6 ~v~k~G~L~K~~~~~k~---Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~------~~~~~f~i   76 (118)
T d1unqa_           6 AIVKEGWLHKRGEYIKT---WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER------PRPNTFII   76 (118)
T ss_dssp             CEEEEEEEEEECSSSCC---EEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECS------SSTTEEEE
T ss_pred             CEEEEEEEEEECCCCCC---cEEEEEEEeccceeEEEeeccCccccccccccceEEeecccccccc------cCCceEEE
Confidence            45599999998865443   56999999875 677788877665   7899888886776666532      22345666


Q ss_pred             Eec-CCCcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           80 YNK-KEKYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        80 yn~-~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                      ... ....+.+.|.|.|.+|+..|++||+.||.+...
T Consensus        77 ~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~  113 (118)
T d1unqa_          77 RCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  113 (118)
T ss_dssp             EEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            532 345567889999999999999999999877543

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.2e-14  Score=108.57  Aligned_cols=98  Identities=17%  Similarity=0.375  Sum_probs=74.1

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      ++.+||||++.|.+.+  .-+++|||||+++.|.||+..+ + ..|.+.+-+ .+|.|.....+..++. -|.|.|... 
T Consensus         8 ~~~~~G~L~k~~~~~~--k~W~kr~~vL~~~~L~~y~~~~-~-~~~~~~i~l-~~~~v~~~~~~~~~~~-~~~~~i~~~-   80 (107)
T d1upqa_           8 PVHIRGWLHKQDSSGL--RLWKRRWFVLSGHCLFYYKDSR-E-ESVLGSVLL-PSYNIRPDGPGAPRGR-RFTFTAEHP-   80 (107)
T ss_dssp             CEEEEEEEEEECSSSS--CCEEEEEEEEETTEEEEESSTT-C-CSCCEEEEG-GGCEEEECCSSCTTSS-SSEEEEECT-
T ss_pred             ceeEEEEEEEeCCCCC--CCeeEEEEEEECCEEEEecCcc-c-ccccceecc-cceEEEEeccCcccCc-ceEEEEEcC-
Confidence            4569999999876543  3466999999999999998654 2 478898888 5556665444444433 355666543 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       +.+.+.|.|.|.+|+.+|++||+.|
T Consensus        81 -~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          81 -GMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             -TSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHHH
Confidence             4678999999999999999999999

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=109.22  Aligned_cols=93  Identities=12%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      -+||||++.+.  .|..-+++|||||+++.|.||+. |.+ ..|++++.|.+.+.|...        ..++|.|..+   
T Consensus         2 ik~G~L~K~~~--~~~~~W~kr~fvL~~~~L~~~~~-~~~-~~~~~~i~L~~~~~~~~~--------~~~~f~i~~~---   66 (102)
T d2coda1           2 VKSGWLDKLSP--QGKRMFQKRWVKFDGLSISYYNN-EKE-MYSKGIIPLSAISTVRVQ--------GDNKFEVVTT---   66 (102)
T ss_dssp             CEEEEEEECCS--SSSSCCEEEEEEECSSEEEEEES-SCC-SSCCCEEETTTEEEEEEE--------TTTEEEEEES---
T ss_pred             cEEEEEEEECC--CCCCCceEEEEEEECCEEEEEec-cCc-ceeEEEEEchhceeeccc--------cceeEEEEcC---
Confidence            37999998873  34555679999999999999874 444 489999999776666652        2357888875   


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           86 YHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .+.+.|.|.|.+|+..|+.||+.||.++
T Consensus        67 ~~~~~l~a~s~~e~~~Wi~ai~~~i~~~   94 (102)
T d2coda1          67 QRTFVFRVEKEEERNDWISILLNALKSQ   94 (102)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999998665

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=105.81  Aligned_cols=102  Identities=17%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             ceeeeEEEeeeccc-ccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            6 VYEGWMVRYGRRKI-GRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         6 ~~EGWly~~g~~~~-g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      -+||||++.+.++- +..-+++|||||.++.|.||+. |.+. .|.+++.+ .+|.+...-.........|+|.|.... 
T Consensus         2 ik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~-~~~~-~~~~~i~l-~~~~~~~~~~~~~~~~~~~~f~i~~~~-   77 (106)
T d1u5da1           2 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYAN-EKSK-QPKGTFLI-KGYSVRMAPHLRRDSKKESCFELTSQD-   77 (106)
T ss_dssp             EEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESS-TTCS-SCSEEEEC-TTCEEEECGGGCSSGGGGGEEEEECSS-
T ss_pred             eEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEec-cccc-cccccccc-CCceEeeccccccccCCceeEEEEcCC-
Confidence            47999999887542 1223679999999999998764 4344 79999999 455555544444445667899998753 


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       .+.+.|.|.|.+|+..|++||+.||++
T Consensus        78 -~~~~~f~a~s~~e~~~W~~ai~~~i~~  104 (106)
T d1u5da1          78 -RRTYEFTATSPAEARDWVDQISFLLKD  104 (106)
T ss_dssp             -SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             -CcEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence             467899999999999999999999865

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=1.8e-13  Score=108.45  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      .+.+||||++.|.+  +.+.+++|||||.++.|.||+...    .|-+.+.++..+.|+..  ..   ..-+.|.|..+ 
T Consensus         9 ~~i~eG~L~K~g~~--~~~~WkkR~fvL~~~~L~yy~~~~----~~~~~i~l~~~~~v~~~--~~---~~~~~f~i~~~-   76 (119)
T d1omwa2           9 DCIMHGYMSKMGNP--FLTQWQRRYFYLFPNRLEWRGEGE----APQSLLTMEEIQSVEET--QI---KERKCLLLKIR-   76 (119)
T ss_dssp             CCCEEEEEEECC--------CEEEEEEEETTEEEEECTTS----CCCEEEEGGGEEEEEEE--ES---SSCEEEEEEET-
T ss_pred             CeEEEEEEEEECCC--CCCCeEEEEEEEEcCeEEEEeccc----ccCccceeccccccccc--cc---cccceEEEEcC-
Confidence            45599999998843  234466999999999999997554    34456777788888752  22   12234555443 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhhhhhhhc
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQHQESQV  118 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~~~  118 (335)
                       ..+.+.|.|.|.+|+..|++||+.|+.+.++.+.
T Consensus        77 -~~~~~~f~a~s~~e~~~W~~al~~a~~~~~~~~~  110 (119)
T d1omwa2          77 -GGKQFVLQCDSDPELVQWKKELRDAYREAQQLVQ  110 (119)
T ss_dssp             -TSCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCcEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4468999999999999999999999998877633

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.9e-14  Score=111.54  Aligned_cols=99  Identities=15%  Similarity=0.254  Sum_probs=75.2

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcce--ecCceeEEEEEEecC-
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLSVYNKK-   83 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~--~hg~~~yvf~iyn~~-   83 (335)
                      +||||++.|...   .=+++|||||+++.|.|||.. .+. .|.+.+.+.+.+.|+...-..  ..+...|+|.|.-.. 
T Consensus         3 k~GwL~k~~~~~---~~wkkRwFvL~~~~L~YYk~~-~~~-~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~r   77 (112)
T d2coaa1           3 REGWVVHYSNKD---TLRKRHYWRLDCKCITLFQNN-TTN-RYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANA   77 (112)
T ss_dssp             EEEEEEECCSSS---CCCEEEEEEECSSEEEEESSS-SCS-SCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSC
T ss_pred             eEEEEEEECCCC---CCeeEEEEEEEcceEEEEecc-CCC-ccceEEeeeccccccccccccccccCCCccEEEEEeCCe
Confidence            799999998654   336699999999999999764 455 899999999999998743321  123466899997432 


Q ss_pred             -------CCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           84 -------EKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        84 -------~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                             +......+.|.++++|..|++||++|+
T Consensus        78 tyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          78 TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EEEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence                   333334456789999999999999993

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.8e-14  Score=110.78  Aligned_cols=99  Identities=21%  Similarity=0.257  Sum_probs=71.5

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEec--ceeeecccCCCCCCCccEEEEecCceEEeeCC-----cceecCceeE
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRG-----LKTHHGHMVY   75 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g--~~l~~YK~~P~~~~~Pirs~vid~~~rVed~G-----re~~hg~~~y   75 (335)
                      +.+.+||||+++|...-+   +++|||||++  ..|.||+ .+.+. .|.+++.|.+++.|....     .+..+  ..+
T Consensus         6 s~~~~eG~L~k~~~~~k~---WkkR~fvL~~~~~~L~~~~-~~~~~-~p~g~i~l~~~~~v~~~~~~~~~~~~~~--~~~   78 (117)
T d1v5ua_           6 SGRSYEGILYKKGAFMKP---WKARWFVLDKTKHQLRYYD-HRMDT-ECKGVIDLAEVEAVAPGTPTIGAPKTVD--EKA   78 (117)
T ss_dssp             CSSSEEEEEEECCCSSSC---CEEEEEEEETTTTEEEEES-SSSCS-SCCCEEEGGGEEEEECCCCCTTSCSSSC--TTT
T ss_pred             CCCeEEEEEEEECCCCCC---ceEEEEEEeCCCCEEEecc-ccccc-CcceEEEecceEEEeecccccccccccc--cce
Confidence            456699999999866544   5599999975  4677665 44444 899999998777766532     12222  233


Q ss_pred             EEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                      .|.+..   ..+.+.|.|.|.+|+..|++||+.||.
T Consensus        79 ~~~~~~---~~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          79 FFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             CEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             EEEeeC---CCcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            444433   357899999999999999999999964

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-13  Score=111.70  Aligned_cols=98  Identities=11%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .+..+||||++.|...-+++   +|||||+|+.|.||+. +.+ ..|++++-|.+++.|+.-...   .+.-+.|+|...
T Consensus         9 ~~~~~eG~L~k~~~~~k~Wk---krwfvL~~~~L~yY~~-~~d-~~~~~~i~L~~~~~~~~~~~~---~~~~~~F~i~~~   80 (136)
T d1x1fa1           9 LPLYFEGFLLIKRSGYREYE---HYWTELRGTTLFFYTD-KKS-IIYVDKLDIVDLTCLTEQNST---EKNCAKFTLVLP   80 (136)
T ss_dssp             SCEEEEEEEEEECTTCCSCE---EEEEEEETTEEEEESC-SSC-SSCSEECCCSSCCEEEECCCT---TSCCCEEEEECS
T ss_pred             CCccEEEEEEEECCCCCCeE---EEEEEEcCCEeEEEee-ccc-ccccccccccceeeeeeeccc---ccccceeeecCC
Confidence            35569999999987766766   9999999999999975 434 489999988777777653211   134578898864


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                         .+.+.|+|.|.+|+..|+.+|+.||+
T Consensus        81 ---~~~~~f~Aes~~e~~~Wi~~I~~v~~  106 (136)
T d1x1fa1          81 ---KEEVQLKTENTESGEEWRGFILTVTE  106 (136)
T ss_dssp             ---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ---CceEEEEeCCHHHHHHHHHHHHHHHh
Confidence               45799999999999999999999965

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.6e-13  Score=104.23  Aligned_cols=102  Identities=14%  Similarity=0.231  Sum_probs=75.8

Q ss_pred             CCceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            4 KVVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         4 ~~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .+.+||||++.+..+ ++..=+++|||||+++.|.|||.. .+. .|.+++.+.+.+.+... ......+.-|.|.|+..
T Consensus         8 ~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~-~~~-~p~g~i~L~~~~~~~~~-~~~~~~~~~~~f~i~~~   84 (111)
T d1u5fa1           8 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSD-KDK-QQKGEFAIDGYDVRMNN-TLRKDGKKDCCFEICAP   84 (111)
T ss_dssp             SEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESST-TCS-SCSEEEECTTCEEEECT-TSCSSTTGGGEEEEECT
T ss_pred             CeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccc-ccc-CcceEEEecccEEEeec-cccccccccceEEEEcc
Confidence            445999999997654 223335799999999999999854 344 89999999665544432 22222344578888864


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                        +.+.+.|.|.|.+|+..|+.||+.+|
T Consensus        85 --~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          85 --DKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             --TSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence              45688999999999999999999985

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-13  Score=113.90  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=82.7

Q ss_pred             CCCceeeeEEEeeeccc--ccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcce----------
Q 019858            3 SKVVYEGWMVRYGRRKI--GRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKT----------   68 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~--g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~----------   68 (335)
                      +++.+||||.+.+.++.  +..-+++|||||+++.|.|||.+....  ..|.+++.|...+.|+...-+.          
T Consensus         1 ~~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~   80 (169)
T d1btka_           1 AAVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPR   80 (169)
T ss_dssp             CCCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC--
T ss_pred             CcEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCccccccc
Confidence            35779999999998755  333467999999999999998766543  5799999998888876532111          


Q ss_pred             ------------ecCceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           69 ------------HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        69 ------------~hg~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                                  .....-|.|.|...   .+.+-|.|.|.||+..||+||+.||..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~F~I~t~---~rt~~l~A~s~eE~~~WI~aL~~~i~~  133 (169)
T d1btka_          81 RGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             -------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccCcceEEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                        01134588999864   578999999999999999999999753

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=111.18  Aligned_cols=105  Identities=15%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             CCceeeeEEEeeeccc---ccccceeeEEEEecc-----eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeE
Q 019858            4 KVVYEGWMVRYGRRKI---GRSFIHMRYFVLESR-----LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVY   75 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~---g~q~~~~RyFVL~g~-----~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~y   75 (335)
                      .+.+||||++.+.+..   +..=+++|||||++.     .|.|||..+.+. .|.+.+.++.++.|... -    ...-|
T Consensus        17 ~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~-~~~g~i~l~~~~~~~~~-~----~~~~~   90 (150)
T d1wg7a_          17 GITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK-EPKGSIFLDSCMGVVQN-N----KVRRF   90 (150)
T ss_dssp             CCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSS-CCSEEECTTTCCEECCC-C----SSCTT
T ss_pred             CEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccccc-ccccccccccccccccC-c----cccce
Confidence            3569999999886643   223466999999865     477788777665 89999999776666542 1    12347


Q ss_pred             EEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        76 vf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +|.|.-+  ..+.+.|.|.|.+|+..|++||+.||.+..+.
T Consensus        91 ~F~i~~~--~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~~~~  129 (150)
T d1wg7a_          91 AFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQLNFEA  129 (150)
T ss_dssp             EEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcC--CCeEEEEEeCCHHHHHHHHHHHHHHHHhhhhh
Confidence            7888643  34678999999999999999999998776444

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=109.19  Aligned_cols=101  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             ceeeeEEEee-------ecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCCcceecCceeEE
Q 019858            6 VYEGWMVRYG-------RRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV   76 (335)
Q Consensus         6 ~~EGWly~~g-------~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~Gre~~hg~~~yv   76 (335)
                      .+||||+++.       ....+..-+++|||||+++.|.|||..+...  ..|.+++.+ .+|+|+...-..   +.-|+
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L-~~~~v~~~~~~~---~r~~~   77 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV-NACLIDISYSET---KRKNV   77 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEEC-SSCEEEECSSSC---SCSSE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEecccccccccccccccee-cceEEEEccccc---ccCce
Confidence            4799999753       2223333477999999999999998765443  478888888 567776532222   34578


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      |.|...   ++.+-|.|.|.+|+..|+.||+.|+...
T Consensus        78 F~i~~~---~~~~~f~A~s~~e~~~Wi~ai~~a~~~~  111 (133)
T d2j59m1          78 FRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLN  111 (133)
T ss_dssp             EEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred             eEEecC---CCEEEEEeCCHHHHHHHHHHHHHHHhcc
Confidence            888864   3679999999999999999999997544

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-13  Score=105.24  Aligned_cols=103  Identities=20%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             CCCCceeeeEEEeeecccccccceeeEEEEecceeee-cccCCCCCCCccEEEEecCceEEee--CCcce--ecCceeEE
Q 019858            2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAY-YKKKPQDNQVPIKTLLIDGNCRVED--RGLKT--HHGHMVYV   76 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~-YK~~P~~~~~Pirs~vid~~~rVed--~Gre~--~hg~~~yv   76 (335)
                      ++.+.+||||++.|...-+++   +|||||.++.+.+ |+.++.....|.+++-+.+++.+..  .+...  -.....+.
T Consensus         8 ~~~v~k~G~L~K~~~~~k~Wk---kR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~   84 (116)
T d1x1ga1           8 SGTVVKQGYLAKQGHKRKNWK---VRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNL   84 (116)
T ss_dssp             CSEEEEEEEEEEECSSSSSEE---EEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSC
T ss_pred             CCCEEEEEEEEEEcCCCCCCc---eEEEEEECCCcEEEEeccccccccceeEEEcCCCEEEEecccCcccccccccccce
Confidence            345669999999987766655   9999999876543 3434444468999999966553322  22211  11234556


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |.|.+.  ..+.+-|.|.|.||+..|++||+++
T Consensus        85 f~i~~~--~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          85 FKVITK--DDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             EEECCT--TCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             eEEEeC--CCeEEEEECCCHHHHHHHHHHHHhh
Confidence            777654  3567899999999999999999987

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=6e-13  Score=105.39  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             ceeeeEEEeeecccccccceeeEEEE--ecceeeecccCCCCC---CCccEEEEecCceEEeeCCcceecCceeEEEEEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY   80 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL--~g~~l~~YK~~P~~~---~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy   80 (335)
                      .++|||.+.+..+.  .-+++|||||  +++.|.||++.|...   ..|+..+-+.....+.+-.... .....+.|.+.
T Consensus        16 ~~~GyL~k~~~~~~--k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~   92 (126)
T d1v5pa_          16 RICGFLDIEDNENS--GKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQ-KPKTPFCFVIN   92 (126)
T ss_dssp             CEECCEEEECTTCS--SCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTT-SCSCSSEEEEE
T ss_pred             ceeeeEEEECCCCC--CCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccc-cccccceEEEc
Confidence            48899998875543  3345999999  478899999888665   5889888886665555432221 22345667765


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      .   ..+.+.|.|+|.+|+..|++||+.|+
T Consensus        93 ~---~~r~~~l~Aes~~e~~~Wi~aL~~A~  119 (126)
T d1v5pa_          93 A---LSQRYFLQANDQKDLKDWVEALNQAS  119 (126)
T ss_dssp             C---SSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             C---CCeeEEEECCCHHHHHHHHHHHHHHh
Confidence            4   45889999999999999999999994

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.1e-12  Score=112.54  Aligned_cols=103  Identities=14%  Similarity=0.246  Sum_probs=77.6

Q ss_pred             CceeeeEEEeeecc-cccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            5 VVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         5 ~~~EGWly~~g~~~-~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      +.++|||+++|.++ .+..-+++|||||+++.|.|||.. .+. .|.+++.+++++.+... ......+--|+|.|... 
T Consensus       104 ~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~-~~~-~~~~~i~L~~~~~~~~~-~~~~~~~~~~~F~i~~~-  179 (209)
T d1u5ea1         104 VIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSD-KDK-QQKGEFAIDGYDVRMNN-TLRKDGKKDCCFEICAP-  179 (209)
T ss_dssp             EEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESST-TCS-SCSEEEECTTCEEEECG-GGCSSTTGGGEEEEECS-
T ss_pred             eeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecC-CCC-ccceEEEecceeeeecc-ccccccCCCcEEEEEcC-
Confidence            45899999998654 233446799999999999999854 344 79999999655554332 22222344588888764 


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                       ..+.+.|+|.|.+|+..|++||+.+|++
T Consensus       180 -~~r~~~f~a~s~~e~~~Wi~al~~~i~~  207 (209)
T d1u5ea1         180 -DKRIYQFTAASPKDAEEWVQQLKFILQD  207 (209)
T ss_dssp             -SSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             -CCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence             4578999999999999999999999875

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-13  Score=106.59  Aligned_cols=98  Identities=11%  Similarity=0.109  Sum_probs=68.4

Q ss_pred             CCCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         3 ~~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      ..+.++|||++......+..-+++|||||+++.|.|||+..   ..|...+.| .+|.|+..-.    ...-|.|.|...
T Consensus         3 ~~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~---~~~~~~i~l-~~~~v~~~~~----~~~~~~f~i~~~   74 (101)
T d2elba2           3 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD---VAGGLAMDI-DNCSVMAVDC----EDRRYCFQITSF   74 (101)
T ss_dssp             CCSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTC---CCE----EE-EECCCCCCCC----CCSSSSSEECCC
T ss_pred             CCccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccCC---cccceEEEe-cccccccccc----cCCcceEEEEee
Confidence            34669999999865545555677999999999999887432   367777777 4677765311    123467888764


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                       ++.+.+.|+|.|.+|+..||+||++|
T Consensus        75 -~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          75 -DGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             -SSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             -cccceEEEECCCHHHHHHHHHHHHhc
Confidence             45678999999999999999999987

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=99.65  Aligned_cols=91  Identities=12%  Similarity=0.193  Sum_probs=69.7

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK   85 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~~   85 (335)
                      .++|||.+.+.++     +++|||||+|+.|.|||....+. .|...+.+ .+|.|+.....    +..|.|.+..  .+
T Consensus         2 ~~s~yl~~~~~~~-----WkkR~fvL~~~~L~yyk~~~~~~-~~~~~i~l-~~~~v~~~~~~----~~~~~f~~~~--~~   68 (95)
T d2cofa1           2 ETSSYLNVLVNSQ-----WKSRWCSVRDNHLHFYQDRNRSK-VAQQPLSL-VGCEVVPDPSP----DHLYSFRILH--KG   68 (95)
T ss_dssp             TTCCEEEEEETTE-----EEEEEEEECSSCEEEECSSTTCS-EEEEEECT-TTCEEECCCBT----TBSCEEEEEE--TT
T ss_pred             CcccchhhhcCCC-----ceEEEEEEECCEEEEEecccccc-cccccccc-cceEEEecccc----cceecceecc--cc
Confidence            4789998887533     66999999999999998755444 78888888 45566653211    2346666655  35


Q ss_pred             cceEEEeecCHHHHHHHHHHHHHH
Q 019858           86 YHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        86 ~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .+.+.|.|.|.+|+.+||++|+.|
T Consensus        69 ~~~~~l~A~s~~e~~~Wi~~L~~~   92 (95)
T d2cofa1          69 EELAKLEAKSSEEMGHWLGLLLSE   92 (95)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceeEEeeCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=98.27  Aligned_cols=93  Identities=11%  Similarity=-0.028  Sum_probs=69.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecc---eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESR---LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~---~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      .|-|||.+....+ +++   +|||||+++   +|.|| +.|.+. .|++++.+.+++.+...-..  ..+..|+|.|.. 
T Consensus         2 ~~~G~L~~~~~~k-~W~---krwfvL~~~~~~~ly~~-~~~~~~-~~~~~i~l~~~~~~~~~~~~--~~~~~~~F~i~~-   72 (99)
T d2coca1           2 LLCGPLRLSESGE-TWS---EVWAAIPMSDPQVLHLQ-GGSQDG-RLPRTIPLPSCKLSVPDPEE--RLDSGHVWKLQW-   72 (99)
T ss_dssp             SSEEEEEEESSSS-CEE---EEEEECCTTCTTCEEEE-CCTTCS-SSCSEECGGGCEEECCCSSS--CCSSSEEEEEEE-
T ss_pred             ceEEEEEccCCCC-Ccc---EEEEEEecCCccEEEEE-CcCccc-cccccccccceeeeeccccc--ccCCceEEEEEc-
Confidence            3789999886543 565   999999876   46544 556665 89999999655554442111  124578999975 


Q ss_pred             CCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           83 KEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        83 ~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                        .++.+.|.|.|.+|+..||+||+.|
T Consensus        73 --~~r~~~l~A~s~~e~~~Wi~aL~~A   97 (99)
T d2coca1          73 --AKQSWYLSASSAELQQQWLETLSTA   97 (99)
T ss_dssp             --TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             --CCcEEEEECCCHHHHHHHHHHHHHh
Confidence              3678999999999999999999998

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-12  Score=99.05  Aligned_cols=91  Identities=19%  Similarity=0.393  Sum_probs=68.7

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecc-------eeeecccCCC---CCCCccEEEEecCceEEeeCCcceecCcee
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR-------LLAYYKKKPQ---DNQVPIKTLLIDGNCRVEDRGLKTHHGHMV   74 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~-------~l~~YK~~P~---~~~~Pirs~vid~~~rVed~Gre~~hg~~~   74 (335)
                      +.++|||.+.+    +   +++|||||++.       .|.||+..+.   ....|++.+-+..++.|.+...    ...-
T Consensus         2 v~k~GyL~K~k----~---WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~----~~~~   70 (103)
T d1qqga1           2 VRKVGYLRKPK----S---MHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD----SKNK   70 (103)
T ss_dssp             EEEEEEEECTT----T---CCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC----SSCS
T ss_pred             cceeEEEEEcC----C---CCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeeccc----CCCc
Confidence            56999998753    2   56999999875       5888875432   1268999999976666765322    2344


Q ss_pred             EEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           75 YVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        75 yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |+|.|...   ++.+.|.|.|.||+..|++||.+.
T Consensus        71 ~~f~i~t~---~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          71 HLVALYTR---DEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             SEEEEEES---SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHhh
Confidence            78999764   578999999999999999999864

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.28  E-value=2.2e-11  Score=95.35  Aligned_cols=105  Identities=16%  Similarity=0.070  Sum_probs=69.1

Q ss_pred             CCCCceeeeEEEeeec-----ccccccceeeEEEEecceeeecccC----CCCCCCccEEEEecCceEEeeCCcceecCc
Q 019858            2 SSKVVYEGWMVRYGRR-----KIGRSFIHMRYFVLESRLLAYYKKK----PQDNQVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         2 ~~~~~~EGWly~~g~~-----~~g~q~~~~RyFVL~g~~l~~YK~~----P~~~~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      ++.+.|||||.++...     +.+..=+++|||||+++.|.||+..    |.....|...+-+ ..|.+...--..   .
T Consensus         5 ~~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~   80 (123)
T d1wjma_           5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSL-ARAQGSVAFDYR---K   80 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEEC-TTCEEEECTTCS---S
T ss_pred             CCCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccc-cceeEEeccccc---c
Confidence            4556799999987642     2223336799999999999999742    2222233333334 345555421111   1


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      -.|+|.|...  ..+.+.|.|.|.+|+.+|+.||+.||..
T Consensus        81 ~~~~f~i~~~--~~~~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          81 RKHVFKLGLQ--DGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             CSSEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcC--CCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            3467766643  3577999999999999999999999653

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.26  E-value=3.9e-12  Score=97.32  Aligned_cols=96  Identities=17%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             eeeeEEEeee-----cccccccceeeEEEEecceeeecccCCCC----CCCccEEEEecCceEEee-CCcceecCceeEE
Q 019858            7 YEGWMVRYGR-----RKIGRSFIHMRYFVLESRLLAYYKKKPQD----NQVPIKTLLIDGNCRVED-RGLKTHHGHMVYV   76 (335)
Q Consensus         7 ~EGWly~~g~-----~~~g~q~~~~RyFVL~g~~l~~YK~~P~~----~~~Pirs~vid~~~rVed-~Gre~~hg~~~yv   76 (335)
                      |||||++++.     .+.+..=+.+|||||+++.|.|||..+..    ...|...+-+. +|.|.. .....    .-++
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~----~~~~   75 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLK-EAICEVALDYKK----KKHV   75 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECT-TCEEEECSSCCS----SSSE
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEec-cceeeecccccc----Ccce
Confidence            7999999853     22233336799999999999999876522    14566666663 455543 22222    2356


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      |.|-..  ..+.+.|.|.|.+|+..|+.||+.|
T Consensus        76 f~i~~~--~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          76 FKLRLS--DGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             EEEECT--TSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             Eeeccc--CCCEEEEECCCHHHHHHHHHHHHhC
Confidence            666543  3468999999999999999999986

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=3.8e-12  Score=100.11  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             CCceeeeEEEeeec-----ccccccceeeEEEEecceeeecccCCCCC------CCccEEEEecCceEEeeCCcceecCc
Q 019858            4 KVVYEGWMVRYGRR-----KIGRSFIHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         4 ~~~~EGWly~~g~~-----~~g~q~~~~RyFVL~g~~l~~YK~~P~~~------~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      ...+||||+++...     +....-+++|||||+++.|.||+..+...      ..|...+.+ .+|.+.......   .
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~---~   82 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDL-QNAAIEIASDYT---K   82 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCC-SSCCCEECCSSS---S
T ss_pred             CcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEec-cceEEEeccccc---c
Confidence            44599999998641     22222367999999999999998554221      234444444 444444432222   2


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      .-++|.|...  ..+.+.|.|.|.+|+..|++||+.++++
T Consensus        83 ~~~~~~l~~~--~~~~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          83 KKHVLRVKLA--NGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             STTEEEEECS--SSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             ccceEEEECC--CCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            3456777764  3467889999999999999999999764

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=1.5e-11  Score=99.93  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=70.0

Q ss_pred             CCceeeeEEEe-----eecccccccceeeEEEEecc------eeeecccCCCCCCCccEEEEecCceEEeeCCcceecCc
Q 019858            4 KVVYEGWMVRY-----GRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         4 ~~~~EGWly~~-----g~~~~g~q~~~~RyFVL~g~------~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      .+.+||||.++     ..-+-|..-+++|||||+++      .|.||+... + ..|.+.+.+.....|....... ...
T Consensus        17 ~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~-~-~k~~g~i~l~~~~~~~~~~~~~-~~~   93 (136)
T d1v5ma_          17 DIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK-A-SRPKVSIPLSAIIEVRTTMPLE-MPE   93 (136)
T ss_dssp             SCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTT-S-SSCSSCEETTTCCBCCCCCCSS-SCC
T ss_pred             eeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCccc-c-cCcCcceecccceeeeeecccc-CCC
Confidence            34599999654     23344567788999999987      477776443 2 3677766664322222111111 113


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .-|+|.|+..  ..+.+.|.|.|.+|+..||+||+.||+..
T Consensus        94 ~~~~F~l~t~--~~~~y~f~A~s~~e~~~Wv~ai~~ai~~~  132 (136)
T d1v5ma_          94 KDNTFVLKVE--NGAEYILETIDSLQKHSWVADIQGCVDSG  132 (136)
T ss_dssp             CTTEECCBCT--TSCBEEEECSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEEcC--CCcEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            4578888754  34568899999999999999999997653

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-11  Score=104.11  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         5 ~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      +-++|||++.|.     ..+++|||||++..|.|||. |.+. .|-+.+.+..++.|+..        .-+.|.|...  
T Consensus        48 ilK~G~L~Kr~~-----~~wkkR~FvL~~~~L~YYkd-~~~~-~~kG~I~L~~~~~v~~~--------~~~~F~I~t~--  110 (147)
T d1w1ha_          48 ILKMGPVDKRKG-----LFARRRQLLLTEGPHLYYVD-PVNK-VLKGEIPWSQELRPEAK--------NFKTFFVHTP--  110 (147)
T ss_dssp             EEEEEEEEECCT-----TSCEEEEEEEETTTEEEEEE-TTTT-EEEEEECCCTTCEEEEE--------ETTEEEEECS--
T ss_pred             EEEEEEEEeecC-----CcceEEEEEEcCCeeEEEeC-CCcc-cccceEEeccccccccc--------cCceEEEecC--
Confidence            348999999762     24679999999999999985 4444 78899999999988752        2347888764  


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                       .+.+.|.|.+ +||..|++||+.+|+...+
T Consensus       111 -~Rty~l~a~~-~d~~~Wv~aI~~v~~~~~~  139 (147)
T d1w1ha_         111 -NRTYYLMDPS-GNAHKWCRKIQEVWRQRYQ  139 (147)
T ss_dssp             -SCEEEEECTT-SCHHHHHHHHHHHHHHHHC
T ss_pred             -ceEEEEEcCh-HHHHHHHHHHHHHHHHHhh
Confidence             5789998865 6899999999999876544

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.9e-07  Score=75.52  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             CCceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCccEEEEecCceEEeeCCcceecCceeEEEEEEecC
Q 019858            4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   83 (335)
Q Consensus         4 ~~~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~   83 (335)
                      ...++||+.......-..   +.|||||-.+.|-|+|.++..+.-..+..+-=.+|.|++.-...   ..-|.|.|.+..
T Consensus        27 ~li~~g~~~~~~~~~~~~---k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v~~~~~~~---~~~~~f~i~~~~  100 (132)
T d1v61a_          27 NVIFMSQVVMQHGACEEK---EERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIE---GSDCMFEITGST  100 (132)
T ss_dssp             CCSCEEEEEBCCSSSSCC---CEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSS---SSCCCEEEECSS
T ss_pred             CEEEEEEEEEEEecCCCc---ceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhcccccccccc---CccceEEEeCCC
Confidence            345899998766554444   49999999999999997765443444444444788887632111   345788998754


Q ss_pred             CCcceEEEeecCHHHHHHHHHHHHHHHh
Q 019858           84 EKYHRITMAAFNIQEALIWKEKIELVID  111 (335)
Q Consensus        84 ~~~~~~~laa~s~eea~~W~~a~~~Ai~  111 (335)
                        .+.+.|-|.|.||..+||++|+++|+
T Consensus       101 --~~~~~l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_         101 --VERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             --SCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             --CCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence              34699999999999999999999964

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=2.3e-06  Score=70.84  Aligned_cols=106  Identities=17%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC--CCccEEEEecCceEEeeCC-cce--ecCceeEEEEEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRG-LKT--HHGHMVYVLSVY   80 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~--~~Pirs~vid~~~rVed~G-re~--~hg~~~yvf~iy   80 (335)
                      .+||+|+.++.++--.   ..|||+|=..+|-|+|.++...  -..-..+-+ .+|.|++.. ...  ......++|.|+
T Consensus        28 i~eG~L~~~~~~~~k~---~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L-~~~~v~~~~~~~~~~~~~~~~~~f~i~  103 (162)
T d2dfka2          28 IYTGEMAWIYQPYGRN---QQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDM-DKYEVIDIEDGRDDDFNVSMKNAFKLH  103 (162)
T ss_dssp             EEEEEEEEESSTTCCC---EEEEEEEETTEEEEEEECSSCTTCEEEEEEEEG-GGEEEEECCSEECSSSCCEESSEEEEE
T ss_pred             EEEEEEEEEEcCCCCc---eeEEEEEeCCeEEEEEecCCCCCceEEccccch-hhceeeecccccccccCccccceEEEE
Confidence            4899999986544333   4899999999999888766433  233444445 666777631 111  112244689999


Q ss_pred             ecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           81 NKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        81 n~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      +.... ..+.|-|.|++|-..||+||+++++..++.
T Consensus       104 ~~~~~-~~~~~~A~s~~eK~~W~~~l~~~~~~~~~~  138 (162)
T d2dfka2         104 NKETE-EVHLFFAKKLEEKIRWLRAFREERKMVQED  138 (162)
T ss_dssp             ESSSS-CEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCC-eEEEEEeCCHHHHHHHHHHHHHHHHHHHHh
Confidence            87543 579999999999999999999997655443

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.6e-05  Score=62.26  Aligned_cols=97  Identities=13%  Similarity=0.218  Sum_probs=60.3

Q ss_pred             eee-eEEEeeecccccccceeeEEEEecc--eeeecccCCCCCCCccEEEEecCceEEeeCCccee-------cCceeEE
Q 019858            7 YEG-WMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-------HGHMVYV   76 (335)
Q Consensus         7 ~EG-Wly~~g~~~~g~q~~~~RyFVL~g~--~l~~YK~~P~~~~~Pirs~vid~~~rVed~Gre~~-------hg~~~yv   76 (335)
                      ++| .|+++++++    -.++|||+|..+  ++ +|++.......+-+++-|++-..|.. |..+-       ....-..
T Consensus        12 ~~G~~l~K~~~~~----~~k~R~f~L~~d~~~i-~~~~~~~~~~~~~~~i~i~~I~~V~~-G~~s~~~~~~~~~~~~~~~   85 (119)
T d1maia_          12 LKGSQLLKVKSSS----WRRERFYKLQEDCKTI-WQESRKVMRSPESQLFSIEDIQEVRM-GHRTEGLEKFARDIPEDRC   85 (119)
T ss_dssp             HHCEEEEEESSSS----CEEEEEEEECTTSSEE-EECCCCTTCCTTTTEEEGGGEEEEEE-SSCSHHHHHHCTTSCGGGE
T ss_pred             HcCCeEEEeCCCC----CCEEEEEEEcCCCCEE-EEeCCCCCCCccceEEEHHHceEEEc-CCCCchhhhcccCCCcCce
Confidence            567 677776433    246899999754  45 56543322223445555544444433 22221       1122346


Q ss_pred             EEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        77 f~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                      |+|.-. .+.+.+.|-|.|.+|++.|+.+|+..|
T Consensus        86 FsIv~~-~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          86 FSIVFK-DQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             EEEEES-SSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEc-CCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            888754 445789999999999999999999874

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=5.5e-05  Score=60.08  Aligned_cols=92  Identities=16%  Similarity=0.254  Sum_probs=65.3

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCC--------ccEEEEecCceEEeeCCcceecCceeEEE
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQV--------PIKTLLIDGNCRVEDRGLKTHHGHMVYVL   77 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~--------Pirs~vid~~~rVed~Gre~~hg~~~yvf   77 (335)
                      -+||.|++++.+       ..|||+|=...|=+.|.+......        -.+..+-=.+|+|++..-   ....-+.|
T Consensus        28 i~eG~l~~~~~~-------k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~---~~~~~~~f   97 (133)
T d1dbha2          28 IMEGTLTRVGAK-------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDD---TNEYKHAF   97 (133)
T ss_dssp             EEEEEEEETTCS-------SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCC---SSSCCSEE
T ss_pred             EEEeEEEEecCC-------CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCC---Ccccccce
Confidence            389999998754       389999988888877755432211        134444447888887421   12345678


Q ss_pred             EEEecCCCcceEEEeecCHHHHHHHHHHHHHH
Q 019858           78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELV  109 (335)
Q Consensus        78 ~iyn~~~~~~~~~laa~s~eea~~W~~a~~~A  109 (335)
                      .|+++.  .+.++|.|.|+||-..|++||+.+
T Consensus        98 ~i~~~~--~~~~~l~a~s~~eK~~W~~~l~~~  127 (133)
T d1dbha2          98 EIILKD--ENSVIFSAKSAEEKNNWMAALISL  127 (133)
T ss_dssp             EECCTT--SCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             eEEcCC--CcEEEEEECCHHHHHHHHHHHHHH
Confidence            887643  346999999999999999999987

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.74  E-value=0.00015  Score=55.51  Aligned_cols=102  Identities=17%  Similarity=0.077  Sum_probs=66.7

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC-CCccEEEEecCceEEeeCCcceecCceeEEEEEEecCC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   84 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iyn~~~   84 (335)
                      .+||=|..+......  -.++||++|=...|=+-|..+... .--++..+-=..|.|++.--   +...-++|.|+++. 
T Consensus         5 i~eG~l~~~~~~~~k--~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d---~~~~~n~f~i~~~~-   78 (109)
T d1zc3b1           5 VYNGDLVEYEADHMA--QLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKD---NPPMKDMFKLLMFP-   78 (109)
T ss_dssp             EEEEEEEEEETTTCC--EEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECC---BTTBSSEEEEEETT-
T ss_pred             EEeeeEEEEccCCCC--cceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeec---ccccceEEEEccCC-
Confidence            478888877544322  123777777766666555544332 22333333336777776311   12355788888763 


Q ss_pred             CcceEEEeecCHHHHHHHHHHHHHHHhhhhh
Q 019858           85 KYHRITMAAFNIQEALIWKEKIELVIDQHQE  115 (335)
Q Consensus        85 ~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~  115 (335)
                        +.+.|-|.|.+|-..|+++|++|+++.++
T Consensus        79 --~~~~~~a~s~~eK~~W~~~l~~a~~~~~~  107 (109)
T d1zc3b1          79 --ESRIFQAENAKIKREWLEVLEETKRALSD  107 (109)
T ss_dssp             --EEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence              46899999999999999999999887654

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.001  Score=54.08  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=67.8

Q ss_pred             ceeeeEEEeeeccccc--------ccceeeEEEEecceeeecccC-CCCC------CCccEEEEecCceEEeeCCcceec
Q 019858            6 VYEGWMVRYGRRKIGR--------SFIHMRYFVLESRLLAYYKKK-PQDN------QVPIKTLLIDGNCRVEDRGLKTHH   70 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~--------q~~~~RyFVL~g~~l~~YK~~-P~~~------~~Pirs~vid~~~rVed~Gre~~h   70 (335)
                      .++|++.....++.+.        .=...|||+|=.+.|-+=|.+ +..+      .-.++..+--.++.|+++     .
T Consensus        14 l~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~-----~   88 (147)
T d1kz7a2          14 LMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN-----V   88 (147)
T ss_dssp             EEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC-----B
T ss_pred             EEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCceeEec-----C
Confidence            4788887655444332        113478887777777654432 2211      123444444467777764     2


Q ss_pred             CceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        71 g~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      .+..+.|.|... .....++|-|.|+||-.+|+++|+.+|+++..+
T Consensus        89 ~~~~~~f~~~~~-~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q~~~  133 (147)
T d1kz7a2          89 KGDTKKFEIWYN-AREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQA  133 (147)
T ss_dssp             TTBTTEEEEEET-TTTEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEeC-CCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            234456666665 456789999999999999999999999988654

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0023  Score=49.52  Aligned_cols=101  Identities=14%  Similarity=0.142  Sum_probs=61.1

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCC--CC-CCccEEEEecCceEEeeCCcceecCceeEEEEEE--e
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQ--DN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY--N   81 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~--~~-~~Pirs~vid~~~rVed~Gre~~hg~~~yvf~iy--n   81 (335)
                      ++|++.....+.-. .=.+.||++|=.+.|=+=|.+..  .. ....+.-+-=..+.|+++.-.     ..+.|.|+  +
T Consensus        15 ~~g~l~v~~~~~~~-~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~i~~~~   88 (121)
T d1ntya2          15 LQESFQVWDPKTLI-RKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG-----DPCKFALWVGR   88 (121)
T ss_dssp             EEEEEEEECSSSSS-CCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTT-----CTTEEEEEESS
T ss_pred             EEeEEEEEcccccC-CCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCCC-----CCceEEEEEec
Confidence            67777643322211 11247999888887765443221  11 222333222256677664221     22345655  4


Q ss_pred             cCCCcceEEEeecCHHHHHHHHHHHHHHHhhh
Q 019858           82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQH  113 (335)
Q Consensus        82 ~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~  113 (335)
                      .......++|-|.|++|-.+||++|++||.+|
T Consensus        89 ~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~eq  120 (121)
T d1ntya2          89 TPTSDNKIVLKASSIENKQDWIKHIREVIQER  120 (121)
T ss_dssp             SCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence            44566779999999999999999999998875

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00038  Score=55.72  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=59.8

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---------CCc-----cEEEEecCceEEeeCCcceecC
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---------QVP-----IKTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---------~~P-----irs~vid~~~rVed~Gre~~hg   71 (335)
                      -+||.|+++..+       ..|||+|=..+|=|=|.+....         ...     .+..+--..+.|.+.....   
T Consensus        26 i~eG~L~k~~~~-------k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~~---   95 (142)
T d1ki1b2          26 LHSGKLYKAKNN-------KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPS---   95 (142)
T ss_dssp             EEECCCBCSSSC-------CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSSC---
T ss_pred             EEeeEEEEecCC-------CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCcc---
Confidence            489999876432       3789999888887533322100         011     1111112555555532222   


Q ss_pred             ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhhhhhh
Q 019858           72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES  116 (335)
Q Consensus        72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q~~~~  116 (335)
                      ....+|.+..   ..+.+.|-|.|.+|-..||++|++||.+.++.
T Consensus        96 ~~~~~~~~~~---~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~e~  137 (142)
T d1ki1b2          96 GDEPIFHISH---IDRVYTLRAESINERTAWVQKIKAASELYIET  137 (142)
T ss_dssp             CC---CEEEE---TTEEEECBCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEecC---CCEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2334555544   45689999999999999999999999988765

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0057  Score=48.35  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCCCC---------------CCccEEEEecCceEEeeCCcceecC
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---------------QVPIKTLLIDGNCRVEDRGLKTHHG   71 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~---------------~~Pirs~vid~~~rVed~Gre~~hg   71 (335)
                      +||=|..+..++ ..+   .|||+|=..+|=+=|.++...               ..-....+-..+..|.+.+...   
T Consensus        27 ~eG~L~~k~~~~-k~k---~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---   99 (140)
T d1xcga2          27 HEGPLTWRISKD-KTL---DLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATDK---   99 (140)
T ss_dssp             EEEEEEECCSSS-CCC---EEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSCS---
T ss_pred             EEeeEEEEecCC-Cce---EEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEecCCCCC---
Confidence            788886433222 223   788888888887656554211               0111112333555666665544   


Q ss_pred             ceeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHHhh
Q 019858           72 HMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ  112 (335)
Q Consensus        72 ~~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai~q  112 (335)
                      ..++++..-. ......++|-|.|+||-..|+++|++||++
T Consensus       100 ~~f~li~~~~-~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2         100 RAFFIICTSK-LGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             SEEEEEECCS-SSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCC-CCCceEEEEEcCCHHHHHHHHHHHHHHHHc
Confidence            4566655332 233456899999999999999999999875

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=96.39  E-value=0.024  Score=43.71  Aligned_cols=96  Identities=14%  Similarity=0.152  Sum_probs=57.0

Q ss_pred             eeeeEEEeeecccccccceeeEEEEecceeeecccCCC----------C----CCCccEEEEecCceEEeeCCcceecCc
Q 019858            7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQ----------D----NQVPIKTLLIDGNCRVEDRGLKTHHGH   72 (335)
Q Consensus         7 ~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~----------~----~~~Pirs~vid~~~rVed~Gre~~hg~   72 (335)
                      +||=|..+..++-+-+   +.-|+++.-+|.+-+.+..          .    .....+..|--..+.|.|.....    
T Consensus         3 ~eG~L~~~~~~~k~~e---r~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~d~----   75 (114)
T d1txda2           3 HEGPLVWKVNRDKTID---LYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDN----   75 (114)
T ss_dssp             EEEEEEEESSSSCBCC---EEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-C----
T ss_pred             eeeeEEEEecCCCceE---EEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCCCC----
Confidence            7888875443333333   4445556666655433321          0    01223334445777887753222    


Q ss_pred             eeEEEEEEecCCCcceEEEeecCHHHHHHHHHHHHHHH
Q 019858           73 MVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI  110 (335)
Q Consensus        73 ~~yvf~iyn~~~~~~~~~laa~s~eea~~W~~a~~~Ai  110 (335)
                       -..|-|+-.......++|-|.|+||-..||++|++|+
T Consensus        76 -~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~  112 (114)
T d1txda2          76 -KALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMA  112 (114)
T ss_dssp             -CEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence             2345666554556688999999999999999999994

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.76  E-value=0.012  Score=46.94  Aligned_cols=98  Identities=6%  Similarity=0.042  Sum_probs=63.9

Q ss_pred             ceeeeEEEeeecccccccceeeEEEEecceeeecccCCCCCCCc---cEEEEecCceEEeeCCcceecCceeEEEEEEec
Q 019858            6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVP---IKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   82 (335)
Q Consensus         6 ~~EGWly~~g~~~~g~q~~~~RyFVL~g~~l~~YK~~P~~~~~P---irs~vid~~~rVed~Gre~~hg~~~yvf~iyn~   82 (335)
                      -+.|++.....++-    .+.|||+|=.+.|=+.|.+-... .|   +|..|-=.++.|+|+     .|.. -.|.|+.+
T Consensus        11 l~~~~f~v~~~~~k----~k~R~vFLF~~~ll~~K~~~~~~-~~~y~~K~~i~l~~~~v~e~-----~gd~-~~F~i~~~   79 (119)
T d1fhoa_          11 IRHDAFQVWEGDEP----PKLRYVFLFRNKIMFTEQDASTS-PPSYTHYSSIRLDKYNIRQH-----TTDE-DTIVLQPQ   79 (119)
T ss_dssp             SEEEEEEECSTTCS----CEEEEEEEETTEEEEEEECCSSS-SCCCSSCCEEESSSCEEEEE-----CTTC-CEEEEECC
T ss_pred             EEEeEEEEEeCCCC----ceEEEEEEEcCeEEEEEeccCCC-CceEEEecEEECCceEEEEc-----CCCC-cEEEEEeC
Confidence            36777777655543    34678777777777777655433 33   344444477777774     1222 36778765


Q ss_pred             CCCc----ceEEEeecCHHHHHHHHHHHHHHHhhhh
Q 019858           83 KEKY----HRITMAAFNIQEALIWKEKIELVIDQHQ  114 (335)
Q Consensus        83 ~~~~----~~~~laa~s~eea~~W~~a~~~Ai~q~~  114 (335)
                      .+..    ..+++-|.|.++-..|+++|.+++++.+
T Consensus        80 ~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~~  115 (119)
T d1fhoa_          80 EPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYA  115 (119)
T ss_dssp             STTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            4432    3677778999999999999999866543

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=86.13  E-value=0.31  Score=36.81  Aligned_cols=44  Identities=14%  Similarity=0.189  Sum_probs=36.6

Q ss_pred             cceEEeeeeecCHHHHHHHhhccCCCcccccceeeeeeEEEEEeC
Q 019858          228 RAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG  272 (335)
Q Consensus       228 ~~~kavgvV~aspe~IFe~lm~~d~~R~eWD~~~~~~~vVE~iD~  272 (335)
                      |.+++.-+|+|+|++||+.|.|++. -.+|...+...++++.-++
T Consensus         1 p~v~~~~~I~ap~~~V~~~l~D~~~-~~~w~p~~~~~~il~~~~~   44 (146)
T d2d4ra1           1 PEVRAERYIPAPPERVYRLAKDLEG-LKPYLKEVESLEVVAREGA   44 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHHCHHH-HGGGCTTEEEEEEEEEETT
T ss_pred             CEEEEEEEECCCHHHHHHHHHChhh-HHhhccccEEEEEEEecCC
Confidence            5678889999999999999999973 4599988888888876443