Citrus Sinensis ID: 019873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHcccEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHEEHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHcHHHHccHHHHcHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccEEccHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHccccEEccccHccccEEEEcc
Coil and Loop (DISEMBL)
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLqrkpagglrgfgaakqvpkrlssldeseldSKELLTLRALFDSVMESIErcnlfdsldeapsdtvesivedgsyvslkeedhFMCVQHEAGHFLTGYllgvlpkgyeipsvealkqddftvgrvqFVGFDFLKEVADARKqkkdtgqvgswgnrgeiSVKTLNNFSCVILGGLVAEHlvfghseghysdinKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTnvtlsfphllgkqRLVNVG
Flexible Loop (DISEMBL)
mysalscqfggelvaasgkeaeyAKRRRQALkrvdrelsrgnFKVALSLVKQlqrkpagglrgfgaakqvpkrlssldeseldskELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADarkqkkdtgqvgswgnrgeisvKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTnvtlsfphllgkqrlvnvg
Low Complexity Region (SEG)
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRlssldeseldskelltlRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG
Disordered region (IsUnstruct)
*****************************************NFKVALSLVK***********************************LLTLRALFDSVMESIERCNLFDSLD*****TVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADA*******GQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGK*******
Disordered Region (DISOPRED)
**SALSCQFGGEL********************VDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKD****G***NRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGY*********KWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTE**********NVTLSFPHLLGKQRLVN**
Disordered Region (DISEMBL)
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVAD***********GSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG
Disordered Region (DISPRO)
MYSALSCQFGGELVAAS****E***R*RQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSALSCQFGGELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVNVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255542490	287	conserved hypothetical protein [Ricinus	0.757	0.881	0.550	2e-75
449436030	319	PREDICTED: uncharacterized protein LOC10	0.841	0.880	0.526	3e-74
298205012	340	unnamed protein product [Vitis vinifera]	0.844	0.829	0.534	4e-74
449485763	319	PREDICTED: uncharacterized LOC101213254	0.841	0.880	0.522	9e-74
3776580	289	Contains similarity to TM021B04.11 gi|21	0.772	0.892	0.507	3e-63
297848052	294	hypothetical protein ARALYDRAFT_314862 [	0.778	0.884	0.492	4e-62
224123278	330	predicted protein [Populus trichocarpa]	0.760	0.769	0.4	4e-53
118487460	330	unknown [Populus trichocarpa]	0.760	0.769	0.4	4e-53
350537327	326	stress regulated protein [Solanum lycope	0.736	0.754	0.408	9e-52
255542488	337	conserved hypothetical protein [Ricinus	0.772	0.765	0.394	6e-51

>gi|255542490|ref|XP_002512308.1| conserved hypothetical protein [Ricinus communis] gi|223548269|gb|EEF49760.1| conserved hypothetical protein [Ricinus communis]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/287 (55%), Positives = 189/287 (65%), Gaps = 34/287 (11%)

Query: 19  KEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLD 78
           KEA+YA RRR++L+RVDRELS+GNFK ALSLV QLQ KP G LRGFGAAKQVPK   +LD
Sbjct: 23  KEADYAIRRRKSLQRVDRELSKGNFKDALSLVNQLQGKPFG-LRGFGAAKQVPKNRFALD 81

Query: 79  ESELDSKELLTLRALFDSVMESIERCNLFDSLD-EAPSDTVESIVEDGSYVSLKEEDHFM 137
             E D   L   RALFDSVM SIE  N F  LD E+ S T E             E H +
Sbjct: 82  RFEFDGTCLSPFRALFDSVMNSIENPNQFPLLDGESRSSTCE-------------EYHNL 128

Query: 138 CVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKD 197
           C+QHEAGHFL GYLLG LPK Y  PS+E L+  +F  G V+F+GF+FL+E          
Sbjct: 129 CLQHEAGHFLVGYLLGSLPKRYRTPSIEELRDGNFAGGNVKFLGFEFLRE---------- 178

Query: 198 TGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINK--LDKVFQWLGY 255
                  GNRG+IS KTLNNFSC+ LGGLV EHL FGHSEGHYSD+ K  LD   +WL  
Sbjct: 179 -------GNRGKISSKTLNNFSCITLGGLVVEHLAFGHSEGHYSDVVKEQLDSTLKWLEL 231

Query: 256 NKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
           ++ EA+ QV+WAA+NT+ I + H + R +L EAMA G+S+G     I
Sbjct: 232 SEDEANFQVRWAAVNTIAILNRHYKARLKLVEAMARGQSVGCCIDAI 278

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436030|ref|XP_004135797.1| PREDICTED: uncharacterized protein LOC101213254 [Cucumis sativus]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/287 (52%), Positives = 200/287 (69%), Gaps = 6/287 (2%)

Query: 14  VAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKR 73
           V  +G     AKRRR ALK VDR LS+  +K A+SLVKQLQ KP G LRGFGAAKQ+ K+
Sbjct: 20  VPVTGDVVSSAKRRR-ALKLVDRALSKRQYKSAVSLVKQLQGKPYG-LRGFGAAKQIIKK 77

Query: 74  LSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPS-DTVESIVEDGSYVS-LK 131
              LDESE++  ++L+L+ L DS+++S+++C     L+E  S + +ES + +G + S  +
Sbjct: 78  RLELDESEVNRMDILSLQPLVDSILDSVQQCLQISLLEEILSVEKLESSMAEGRHSSRCE 137

Query: 132 EEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADA 191
           E++HF+C QHEAGHFL GYL+GVLPK Y++PS++AL+Q+ F  G+V FVGF+FL E+  A
Sbjct: 138 EQEHFICAQHEAGHFLVGYLMGVLPKAYQVPSIQALRQNRFAEGKVSFVGFEFLGEIDSA 197

Query: 192 R--KQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKV 249
           +   +  D     +  N+G IS KTLN FSCV LGGLVAE LV G+S+GH +DI KL  V
Sbjct: 198 KILGENADIRSFNNRANKGTISSKTLNQFSCVTLGGLVAELLVAGNSDGHLADILKLWSV 257

Query: 250 FQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIG 296
             WLG  KSEAD  ++WAA NT  I   H + RSRLAEAMAL + IG
Sbjct: 258 LTWLGLPKSEADLHLRWAATNTTFIMSRHCETRSRLAEAMALAKPIG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205012|emb|CBI34319.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 156/292 (53%), Positives = 202/292 (69%), Gaps = 10/292 (3%)

Query: 11  GELVAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQV 70
           G + +A  K+A  A RRR++LK VDRELS+GN+K A+SLVKQL  KP GGLRGFGAAKQV
Sbjct: 51  GAIASAEHKDAGNAARRRRSLKMVDRELSKGNYKTAVSLVKQLNGKP-GGLRGFGAAKQV 109

Query: 71  PKRLSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSL 130
             RL  L   E       +L++L DS+++ +E+C  F  LDE     +E  + D    S 
Sbjct: 110 SHRLDDLKLHE-------SLQSLVDSILDLMEKCRQFAMLDEVSVKALEKSMPDEGNESH 162

Query: 131 KEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVAD 190
            +EDHF+  QHEAGHFL GYLLGVLP+GYEIPS EAL+QD F  GRV+FVGF+FL++V  
Sbjct: 163 CDEDHFLYTQHEAGHFLVGYLLGVLPRGYEIPSKEALRQDRFAAGRVEFVGFEFLRQVRT 222

Query: 191 ARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVF 250
              +  +         +G+IS KTLN FSCVI+ GL+AE+LVFG SEG +SD+ +LD+V 
Sbjct: 223 T--EIVEKKFSKGKSKKGKISSKTLNRFSCVIVAGLIAEYLVFGCSEGLHSDVEQLDEVL 280

Query: 251 QWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
           +WLG+++ EA SQ+KWA LNTVLI   H + R RLA+AMALG+S+G     I
Sbjct: 281 KWLGFSEGEAYSQMKWAVLNTVLILSRHHEARLRLAKAMALGKSVGYCIDTI 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485763|ref|XP_004157268.1| PREDICTED: uncharacterized LOC101213254 [Cucumis sativus]

 Score =  283 bits (724), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 150/287 (52%), Positives = 200/287 (69%), Gaps = 6/287 (2%)

Query: 14  VAASGKEAEYAKRRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKR 73
           V  +G     AKRRR ALK VDR LS+  +K A+SLVKQLQ KP G LRGFGAAKQ+ K+
Sbjct: 20  VPVTGDVVSSAKRRR-ALKLVDRALSKRQYKSAVSLVKQLQGKPYG-LRGFGAAKQIIKK 77

Query: 74  LSSLDESELDSKELLTLRALFDSVMESIERCNLFDSLDEAPS-DTVESIVEDGSYVS-LK 131
              LDESE++  ++L+L+ L DS+++S+++C     L++  S + +ES + +G + S  +
Sbjct: 78  RLELDESEVNRMDILSLQPLVDSILDSVQQCLQISLLEDILSVEKLESSMAEGRHSSRCE 137

Query: 132 EEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADA 191
           E++HF+C QHEAGHFL GYL+GVLPK Y++PS++AL+Q+ F  G+V FVGF+FL E+  A
Sbjct: 138 EQEHFICAQHEAGHFLVGYLMGVLPKAYQVPSIQALRQNRFAEGKVSFVGFEFLGEIDSA 197

Query: 192 R--KQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKV 249
           +   +  D     +  N+G IS KTLN FSCV LGGLVAE LV G+S+GH +DI KL  V
Sbjct: 198 KILGENADIRSFNNRANKGTISSKTLNQFSCVTLGGLVAELLVAGNSDGHLADILKLWSV 257

Query: 250 FQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIG 296
             WLG  KSEAD  ++WAA NT  I   H + RSRLAEAMAL + IG
Sbjct: 258 LTWLGLPKSEADLHLRWAATNTAFIMSRHCETRSRLAEAMALAKPIG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3776580|gb|AAC64897.1| Contains similarity to TM021B04.11 gi|2191197 from A. thaliana BAC gb|AF007271 [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 141/278 (50%), Positives = 185/278 (66%), Gaps = 20/278 (7%)

Query: 26  RRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSK 85
           RRR++L+RVD+EL RGN++ ALSLVKQL+ K  G L  FG+AK +PK+L      ++ SK
Sbjct: 22  RRRKSLERVDKELLRGNYETALSLVKQLKSK-HGCLSAFGSAKLLPKKL------DMSSK 74

Query: 86  ELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGH 145
               LR+L DSV  SIE   + +       D+V +  E     S  EED F  VQHE+GH
Sbjct: 75  T--DLRSLIDSVSRSIESVYVQE-------DSVRTSKEMEIKTS-PEEDWFSVVQHESGH 124

Query: 146 FLTGYLLGVLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARKQKKDTGQVGSW 204
           FL GYLLGVLP+ YEIP++EA++Q+   V GRV+FVGF+FLK+V  A +  KD   V   
Sbjct: 125 FLVGYLLGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMKD--DVDGQ 182

Query: 205 GNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQV 264
            N+G IS KTLNNFSCVILGG+V EH++FG+SEG YSDI KL+ V +WLG+ +SE ++ +
Sbjct: 183 MNQGNISSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTESEKEAHI 242

Query: 265 KWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
           KWA  NTV + H H + R  LAE MA  + I +    I
Sbjct: 243 KWAVSNTVSLLHSHKEARVSLAETMAKAKPISTCIEAI 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848052|ref|XP_002891907.1| hypothetical protein ARALYDRAFT_314862 [Arabidopsis lyrata subsp. lyrata] gi|297337749|gb|EFH68166.1| hypothetical protein ARALYDRAFT_314862 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (623), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 138/280 (49%), Positives = 187/280 (66%), Gaps = 20/280 (7%)

Query: 26  RRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSK 85
           RRR++L+RV +ELSRGN++ ALSLVKQL+ K  G L  FG+AK +PK+L    +S+L S 
Sbjct: 23  RRRRSLERVSKELSRGNYETALSLVKQLKSK-HGCLSAFGSAKLLPKKLDMSSKSDLWS- 80

Query: 86  ELLTLRALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGH 145
                  L DSV  SIE   + +       D+V    E+ +  S  EED F  VQHE+GH
Sbjct: 81  -------LIDSVSRSIESVYVEE-------DSVRISKEEETKTS-PEEDWFAVVQHESGH 125

Query: 146 FLTGYLLGVLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARKQKKDT--GQVG 202
           FL GYLLGVLP+ YEIP++EA++Q+  +V GRV+FVGF+FLK+V  A +  KD    ++ 
Sbjct: 126 FLVGYLLGVLPRYYEIPTLEAVRQNVSSVTGRVEFVGFEFLKQVGAANQLMKDDRDSRMN 185

Query: 203 SWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADS 262
               +G IS KTLNNFSCVILGG+VAEHL+FG+SEG YSD+ KL  V +WLG+ ++E ++
Sbjct: 186 LSDTQGNISSKTLNNFSCVILGGMVAEHLLFGYSEGFYSDVVKLIDVLRWLGFTETEKEA 245

Query: 263 QVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
            ++WA  NTV + H H + R  LAEA+A  + IG+    I
Sbjct: 246 HIRWAVSNTVSLLHSHSEARVSLAEAIAKAKPIGACIEAI 285

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123278|ref|XP_002319039.1| predicted protein [Populus trichocarpa] gi|222857415|gb|EEE94962.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 51/305 (16%)

Query: 26  RRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSK 85
           +R+Q L++VD+ELS+G+ + ALSLVK LQ KP GGLR FGA +Q+P+RL +LDE +L+  
Sbjct: 30  QRQQVLEQVDKELSKGDERAALSLVKDLQGKP-GGLRCFGAGRQIPQRLYTLDELKLNGI 88

Query: 86  ELLTLRALFDSVMESIERC----------NLFDSLDEAPSD------------TVESIVE 123
           E  +L +  D+ + +IER             +++   +P              T++S+  
Sbjct: 89  ETRSLLSPVDATLGAIERTLQLAGVAGGLATWNAFGFSPQQILLFSLGLLFLWTLDSVSF 148

Query: 124 DGSYVSL---------KEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQD-DFT 173
           +G   SL          ++ H   +QHEAGHFL  Y++G+LP+GY + S+EAL++D  F 
Sbjct: 149 NGGLGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYMVGILPRGYTLTSLEALQKDGSFN 208

Query: 174 V-GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLV 232
           V     FV FDFL+EV                 N G++S  TLN FSC+ L G+  E+L+
Sbjct: 209 VQAGTAFVDFDFLEEV-----------------NTGKVSATTLNRFSCIALAGVATEYLL 251

Query: 233 FGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALG 292
           FG++EG  +DINKLD + + LG+ + +ADSQV+W+ LNT+L+   H   R +LAEAM +G
Sbjct: 252 FGYAEGGLADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLRRHEGAREKLAEAMTMG 311

Query: 293 RSIGS 297
           +S+GS
Sbjct: 312 KSVGS 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487460|gb|ABK95557.1| unknown [Populus trichocarpa]

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 51/305 (16%)

Query: 26  RRRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSK 85
           +R+Q L++VD+ELS+G+ + ALSLVK LQ KP GGLR FGA +Q+P+RL +LDE +L+  
Sbjct: 30  QRQQVLEQVDKELSKGDERAALSLVKDLQGKP-GGLRCFGAGRQIPQRLYTLDELKLNGI 88

Query: 86  ELLTLRALFDSVMESIERC----------NLFDSLDEAPSD------------TVESIVE 123
           E  +L +  D+ + +IER             +++   +P              T++S+  
Sbjct: 89  ETRSLLSPVDATLGAIERTLQLAGVAGGLATWNAFGFSPQQILLFSLGLLFLWTLDSVSF 148

Query: 124 DGSYVSL---------KEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQD-DFT 173
           +G   SL          ++ H   +QHEAGHFL  Y++G+LP+GY + S+EAL++D  F 
Sbjct: 149 NGGLGSLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYMVGILPRGYTLTSLEALQKDGSFN 208

Query: 174 V-GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLV 232
           V     FV FDFL+EV                 N G++S  TLN FSC+ L G+  E+L+
Sbjct: 209 VQAGTAFVDFDFLEEV-----------------NTGKVSATTLNRFSCIALAGVATEYLL 251

Query: 233 FGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALG 292
           FG++EG  +DINKLD + + LG+ + +ADSQV+W+ LNT+L+   H   R +LAEAM +G
Sbjct: 252 FGYAEGGLADINKLDMLIKGLGFTQKKADSQVRWSVLNTILMLRRHEGAREKLAEAMTMG 311

Query: 293 RSIGS 297
           +S+GS
Sbjct: 312 KSVGS 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537327|ref|NP_001233778.1| stress regulated protein [Solanum lycopersicum] gi|58198163|gb|AAW65813.1| stress regulated protein [Solanum lycopersicum]

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 123/301 (40%), Positives = 180/301 (59%), Gaps = 55/301 (18%)

Query: 31  LKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKELLTL 90
           L++VD+EL++G+ + ALSLVK LQ KP GGLR FGAA+QVP+RL SLDE +L+  E ++L
Sbjct: 31  LEQVDKELTKGDERAALSLVKDLQGKP-GGLRCFGAARQVPQRLYSLDELKLNGIEAISL 89

Query: 91  RALFDSVMESIERCNL-----------FDSLDEAPSDT---------------------V 118
            +  D+ + +IER NL           + +LD +P                        V
Sbjct: 90  LSPVDATLGAIER-NLQIAAILSGSAAWYALDLSPQQIFFVSLGVLFLWTLDLVSFNGGV 148

Query: 119 ESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQD---DFTVG 175
            ++V D    +  ++ H   +QHEAGHFL  YLLG+LPKGY + S++ALK++   +   G
Sbjct: 149 GTLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPKGYTLTSLDALKKEGSLNIQAG 208

Query: 176 RVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGH 235
              FV  +F++EV                 NRG+++   LN FSC+ L G+  E+L+FG+
Sbjct: 209 -TAFVDLEFIEEV-----------------NRGKVTATMLNRFSCIALAGVATEYLLFGY 250

Query: 236 SEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSI 295
           +EG  SDIN+LD + + LG+ + +ADSQV+WA LNT+LI   H + RS+LAEAM  G+S+
Sbjct: 251 AEGGLSDINQLDALLKSLGFTQKKADSQVRWAVLNTILILRRHEKARSKLAEAMTQGKSV 310

Query: 296 G 296
           G
Sbjct: 311 G 311

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542488|ref|XP_002512307.1| conserved hypothetical protein [Ricinus communis] gi|223548268|gb|EEF49759.1| conserved hypothetical protein [Ricinus communis]

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 182/309 (58%), Gaps = 51/309 (16%)

Query: 27  RRQALKRVDRELSRGNFKVALSLVKQLQRKPAGGLRGFGAAKQVPKRLSSLDESELDSKE 86
           R+Q L++VD+EL +G+ + AL+LV+ LQ KPAG L+ +GAA+QVP+RL +LDE +L+  E
Sbjct: 38  RQQVLEQVDKELKKGDERAALALVRDLQGKPAG-LKCYGAARQVPQRLYTLDELKLNGIE 96

Query: 87  LLTLRALFDSVMESIER----CNL------FDSLDEAPSDT------------------- 117
             +L +  D+ + SIER    C L      +++   +P                      
Sbjct: 97  AASLLSPVDATLGSIERNLQLCGLLGGIAAWNTFGFSPQQIFYFSLGLLFLLTLDSVSFN 156

Query: 118 --VESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEAL-KQDDFTV 174
             V S+V D    +  ++ H   +QHEAGHFL  YL+G+LPKGY + S+EAL K+    V
Sbjct: 157 GGVGSLVLDTIGHTFSQKYHSRVIQHEAGHFLIAYLVGILPKGYTLSSLEALQKEGSLNV 216

Query: 175 -GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVF 233
                FV F+FL+EV                 N G++S  +LN FSC+ L G+  E+L++
Sbjct: 217 QAGTAFVDFEFLEEV-----------------NTGKLSAMSLNRFSCIALAGVATEYLLY 259

Query: 234 GHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGR 293
           G +EG  +DINKLD + + LG+ + +ADSQV+W+ LNT+LI   H   R++LAEAM++G+
Sbjct: 260 GFAEGGLADINKLDMLLKGLGFTQKKADSQVRWSVLNTILILRRHDGARAKLAEAMSMGK 319

Query: 294 SIGSYTSKI 302
           S+GS  S I
Sbjct: 320 SVGSCISII 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2199471	223	AT1G54680 "AT1G54680" [Arabido	0.586	0.878	0.512	3e-46
TAIR|locus:2181221	341	AT5G27290 [Arabidopsis thalian	0.494	0.483	0.388	6.7e-43
TAIR|locus:2011861	389	AT1G56180 "AT1G56180" [Arabido	0.284	0.244	0.237	0.00014

TAIR|locus:2199471 AT1G54680 "AT1G54680" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 106/207 (51%), Positives = 139/207 (67%)

Query:    92 ALFDSVMESIERCNLFDSLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYL 151
             +L DSV  SIE  +++        D+V +  E     S  EED F  VQHE+GHFL GYL
Sbjct:    13 SLIDSVSRSIE--SVY-----VQEDSVRTSKEMEIKTS-PEEDWFSVVQHESGHFLVGYL 64

Query:   152 LGVLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEI 210
             LGVLP+ YEIP++EA++Q+   V GRV+FVGF+FLK+V  A +  KD   V    N+G I
Sbjct:    65 LGVLPRHYEIPTLEAVRQNVSNVTGRVEFVGFEFLKQVGAANQLMKD--DVDGQMNQGNI 122

Query:   211 SVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLGYNKSEADSQVKWAALN 270
             S KTLNNFSCVILGG+V EH++FG+SEG YSDI KL+ V +WLG+ +SE ++ +KWA  N
Sbjct:   123 SSKTLNNFSCVILGGMVTEHILFGYSEGLYSDIVKLNDVLRWLGFTESEKEAHIKWAVSN 182

Query:   271 TVLISHHHIQVRSRLAEAMALGRSIGS 297
             TV + H H + R  LAE MA  + I +
Sbjct:   183 TVSLLHSHKEARVSLAETMAKAKPIST 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2181221 AT5G27290 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 70/180 (38%), Positives = 110/180 (61%)

Query:   118 VESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLGVLPKGYEIPSVEALKQDDFTVGRV 177
             + S+V D +  +  +  H   VQHEAGHFL  YL+G+LP+GY + S+EAL+++    G +
Sbjct:   163 IGSLVLDTTGHTFSQRYHNRVVQHEAGHFLVAYLVGILPRGYTLSSLEALQKE----GSL 218

Query:   178 QFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHSE 237
                      +   A    +   +V    N G++S   LN FSC+ L G+  E+L++G++E
Sbjct:   219 NI-------QAGSAFVDYEFLEEV----NSGKVSATMLNRFSCIALAGVATEYLLYGYAE 267

Query:   238 GHYSDINKLDKVFQWLGYNKSEADSQVKWAALNTVLISHHHIQVRSRLAEAMALGRSIGS 297
             G   DI+KLD + + LG+ + +ADSQV+W+ LNT+L+   H   RS+LA+AM+ G S+GS
Sbjct:   268 GGLDDISKLDGLVKSLGFTQKKADSQVRWSVLNTILLLRRHEIARSKLAQAMSKGESVGS 327

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2011861 AT1G56180 "AT1G56180" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 23/97 (23%), Positives = 45/97 (46%)

Query:   208 GEISVKTLNNFSCVILGGLVAEHLVFGHSEGHYSDINKLDKVFQWLG--YNKSEADSQVK 265
             G +S  + + +S V+  G+ AE LV+G +EG  +D N    +   L    + ++  +Q +
Sbjct:   285 GRLSGSSFDRYSMVLFAGIAAEALVYGEAEGGENDENLFRSISVLLEPPLSVAQMSNQAR 344

Query:   266 WAALNTVLISHHHIQVRSRLAEAMALGRSIGSYTSKI 302
             W+ L +  +   H        EA+ +G  +     +I
Sbjct:   345 WSVLQSYNLLKWHKAAHRAAVEALQVGSPLSIVIRRI 381

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
PF01434	213	Peptidase_M41: Peptidase family M41 This is family	99.96
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.93
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.92
CHL00176	638	ftsH cell division protein; Validated	99.92
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.92
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.9
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.87
CHL00206	2281	ycf2 Ycf2; Provisional	98.59
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	96.72
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	95.8
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	95.79
PF13398	200	Peptidase_M50B: Peptidase M50B-like	95.47
PRK10779	449	zinc metallopeptidase RseP; Provisional	95.0
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	94.98
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	94.52
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	94.32
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	93.52
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	91.45
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	88.03
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	87.62
PF14247	220	DUF4344: Domain of unknown function (DUF4344)	84.85
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	82.07

>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification

Probab=99.96  E-value=4e-28  Score=221.24  Aligned_cols=153  Identities=26%  Similarity=0.329  Sum_probs=120.2

Q ss_pred             chhhHHhhcccC--CCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHH
Q 019873          116 DTVESIVEDGSY--VSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADA  191 (334)
Q Consensus       116 D~~~~llld~~~--r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~  191 (334)
                      +++++++++...  +.+++++|+|+|+||||||+|+|+++  .||.++||.|     +|. ..|.+.|.+.+        
T Consensus         7 ~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~p-----rg~-~~G~~~~~~~~--------   72 (213)
T PF01434_consen    7 EAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVP-----RGS-ALGFTQFTPDE--------   72 (213)
T ss_dssp             HHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESST-----TCC-CCHCCEECHHT--------
T ss_pred             HHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEec-----CCC-cceeEEeccch--------
Confidence            366888888543  66899999999999999999999998  5999999999     332 33445554322        


Q ss_pred             hhhcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhC--C-ccchhhHHHHHHHHHHH----hCCCcc------
Q 019873          192 RKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFG--H-SEGHYSDINKLDKVFQW----LGYNKS------  258 (334)
Q Consensus       192 r~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG--~-atGg~~Dl~qat~l~r~----lGms~~------  258 (334)
                                    +++..|+.++.+.++|+|||||||+++||  + ++|+++|++++|++++.    |||+.+      
T Consensus        73 --------------~~~~~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~  138 (213)
T PF01434_consen   73 --------------DRYIRTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSY  138 (213)
T ss_dssp             --------------T-SS-BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-S
T ss_pred             --------------hcccccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeee
Confidence                          34568999999999999999999999999  4 57999999999999885    688751      


Q ss_pred             --------------------------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH
Q 019873          259 --------------------------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG  296 (334)
Q Consensus       259 --------------------------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~  296 (334)
                                                .++.++    ..||.+|++||++|++.+++||++|+++++|.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~  206 (213)
T PF01434_consen  139 SPNDDDEVFLGREWNSRRPMSEETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLS  206 (213)
T ss_dssp             EEEE-S-SSS-E---EEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEE
T ss_pred             eccccccccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeC
Confidence                                      123333    36999999999999999999999999999995

; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.5e-26  Score=235.57  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=135.1

Q ss_pred             hHHhhccc--CCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhccccccc-ceeEEecchhhHHHHHHhh
Q 019873          119 ESIVEDGS--YVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADARK  193 (334)
Q Consensus       119 ~~llld~~--~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~-gGv~f~~~e~~~e~~e~r~  193 (334)
                      ++|+++..  +++++++-|+.+||||+||+|||+.+.  .|++|.||.|        +|+ .|..+..|+.         
T Consensus       539 DrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImP--------RG~sLG~t~~LPe~---------  601 (752)
T KOG0734|consen  539 DRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMP--------RGPSLGHTSQLPEK---------  601 (752)
T ss_pred             hheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeecc--------CCccccceeecCcc---------
Confidence            88999854  678899999999999999999999998  5999999999        665 3444544441         


Q ss_pred             hcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHH----hCCCcc--------
Q 019873          194 QKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGH---SEGHYSDINKLDKVFQW----LGYNKS--------  258 (334)
Q Consensus       194 ~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~---atGg~~Dl~qat~l~r~----lGms~~--------  258 (334)
                                  |++.+|+.++..++-|+||||+||+|+||.   .+|+++|++|+|++++.    ||||++        
T Consensus       602 ------------D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~  669 (752)
T KOG0734|consen  602 ------------DRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSA  669 (752)
T ss_pred             ------------chhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeec
Confidence                        678999999999999999999999999997   36999999999999875    899862        


Q ss_pred             -------------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHhch
Q 019873          259 -------------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKILTE  305 (334)
Q Consensus       259 -------------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie~~  305 (334)
                                   .+|+||    +.+|++|+.||+.|...+++||+||+++||++  |..++++..
T Consensus       670 ~~~~~s~~~~t~~lidaEi~~lL~~sYeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~  735 (752)
T KOG0734|consen  670 EDNSSSLSPRTQELIDAEIKRLLRDSYERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGK  735 (752)
T ss_pred             cCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhcc
Confidence                         267776    46999999999999999999999999999996  555555544

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.92  E-value=1.4e-24  Score=226.10  Aligned_cols=160  Identities=18%  Similarity=0.211  Sum_probs=129.1

Q ss_pred             hhhHHhhcc--cCCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhccccccc-ceeEEecchhhHHHHHH
Q 019873          117 TVESIVEDG--SYVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTV-GRVQFVGFDFLKEVADA  191 (334)
Q Consensus       117 ~~~~llld~--~~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~-gGv~f~~~e~~~e~~e~  191 (334)
                      ++.++..+.  ....+++++|+++|||||||++|+++++  .||+++||.|        +|. +|+++..|+        
T Consensus       388 a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~p--------rg~~~g~~~~~~~--------  451 (644)
T PRK10733        388 AKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIP--------RGRALGVTFFLPE--------  451 (644)
T ss_pred             HHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEec--------cCCCcceeEECCC--------
Confidence            335555543  2345789999999999999999999998  6999999999        332 354443332        


Q ss_pred             hhhcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHH----hCCCcc------
Q 019873          192 RKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGH---SEGHYSDINKLDKVFQW----LGYNKS------  258 (334)
Q Consensus       192 r~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~---atGg~~Dl~qat~l~r~----lGms~~------  258 (334)
                           +        ++...|+++|.+.++|+|||||||+++||.   ++|+++|+++||++++.    ||||++      
T Consensus       452 -----~--------~~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~  518 (644)
T PRK10733        452 -----G--------DAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLY  518 (644)
T ss_pred             -----c--------ccccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhh
Confidence                 1        455689999999999999999999999984   57999999999999874    798851      


Q ss_pred             -------------------------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHhch
Q 019873          259 -------------------------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKILTE  305 (334)
Q Consensus       259 -------------------------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie~~  305 (334)
                                               .+|+++    ..||.+|++||++|++.+++||++|+++|||+  +..++|...
T Consensus       519 ~~~~~~~~lg~~~~~~~~~s~~~~~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~  596 (644)
T PRK10733        519 AEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR  596 (644)
T ss_pred             cccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence                                     145664    47999999999999999999999999999995  777777654

>CHL00176 ftsH cell division protein; Validated

Probab=99.92  E-value=1.3e-24  Score=226.70  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=129.8

Q ss_pred             hhhHHhhcccC-CCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccc-cceeEEecchhhHHHHHHh
Q 019873          117 TVESIVEDGSY-VSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFT-VGRVQFVGFDFLKEVADAR  192 (334)
Q Consensus       117 ~~~~llld~~~-r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g-~gGv~f~~~e~~~e~~e~r  192 (334)
                      ++..++.+... ...++++|++|||||||||+|+++++  .||+++||.|        +| .+|+++..|+         
T Consensus       419 Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~p--------rg~~~G~~~~~p~---------  481 (638)
T CHL00176        419 AIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIP--------RGQAKGLTWFTPE---------  481 (638)
T ss_pred             HHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEee--------cCCCCCceEecCC---------
Confidence            44666665332 34578999999999999999999998  5999999999        33 2455544332         


Q ss_pred             hhcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHH----hCCCc--------
Q 019873          193 KQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGH---SEGHYSDINKLDKVFQW----LGYNK--------  257 (334)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~---atGg~~Dl~qat~l~r~----lGms~--------  257 (334)
                          +        +++.+|+.++...++++|||||||+++||.   ++|+++|++++|++++.    |||+.        
T Consensus       482 ----~--------~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~~g~~~~~~  549 (638)
T CHL00176        482 ----E--------DQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSSIGPISLES  549 (638)
T ss_pred             ----c--------ccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCcCCceeecC
Confidence                1        567899999999999999999999999994   57999999999999885    78862        


Q ss_pred             -----------------------chhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHhch
Q 019873          258 -----------------------SEADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKILTE  305 (334)
Q Consensus       258 -----------------------~~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie~~  305 (334)
                                             ..+|.++    +.||.+|++||++|++.+++||++|+++|||+  |+.++++..
T Consensus       550 ~~~~~~~~~~~~~~~~~~s~~~~~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~  626 (638)
T CHL00176        550 NNSTDPFLGRFMQRNSEYSEEIADKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSY  626 (638)
T ss_pred             CCCcccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhc
Confidence                                   0245554    47999999999999999999999999999995  777777654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.92  E-value=2.1e-24  Score=217.20  Aligned_cols=157  Identities=21%  Similarity=0.236  Sum_probs=124.2

Q ss_pred             hhHHhhcc--cCCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhh
Q 019873          118 VESIVEDG--SYVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARK  193 (334)
Q Consensus       118 ~~~llld~--~~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~  193 (334)
                      +..+..+.  ....+++++|+++|||||||+||+|+++  .|+.++||.|+     |.  .+|+.+..+.          
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr-----g~--~~G~~~~~~~----------  354 (495)
T TIGR01241       292 IDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR-----GQ--ALGYTQFLPE----------  354 (495)
T ss_pred             HHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec-----CC--ccceEEecCc----------
Confidence            34444432  2345789999999999999999999996  69999999982     21  2344433221          


Q ss_pred             hcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCCc-cchhhHHHHHHHHHHH----hCCCcc----------
Q 019873          194 QKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHS-EGHYSDINKLDKVFQW----LGYNKS----------  258 (334)
Q Consensus       194 ~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~a-tGg~~Dl~qat~l~r~----lGms~~----------  258 (334)
                         +        +.+..|+++++++++|+|||+|||+++||+. +|+++|+++||++++.    |||+..          
T Consensus       355 ---~--------~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~  423 (495)
T TIGR01241       355 ---E--------DKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDG  423 (495)
T ss_pred             ---c--------ccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCc
Confidence               0        3568899999999999999999999999985 6999999999999774    788751          


Q ss_pred             ---------------------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHH
Q 019873          259 ---------------------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKI  302 (334)
Q Consensus       259 ---------------------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~I  302 (334)
                                           .++.++    ++|+.+|++||++|++++++||++|+++++|+  |..++|
T Consensus       424 ~~~~l~~~~~~~~~~s~~~~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il  494 (495)
T TIGR01241       424 GDVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELL  494 (495)
T ss_pred             cccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHh
Confidence                                 134443    58999999999999999999999999999996  555554

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.3e-23  Score=217.13  Aligned_cols=160  Identities=22%  Similarity=0.254  Sum_probs=135.2

Q ss_pred             chhhHHhhccc--CCCCChhHHHHHHHHhHHHHHHHHHhCC--CCCceecCchhhhcccccc-cceeEEecchhhHHHHH
Q 019873          116 DTVESIVEDGS--YVSLKEEDHFMCVQHEAGHFLTGYLLGV--LPKGYEIPSVEALKQDDFT-VGRVQFVGFDFLKEVAD  190 (334)
Q Consensus       116 D~~~~llld~~--~r~ls~eer~RIA~HEAGHaLVAyLLgi--PV~gyTI~p~eal~~G~~g-~gGv~f~~~e~~~e~~e  190 (334)
                      ++.+.++.+..  ++++++++|+.+|||||||++|+++++.  ||+++||.|        +| .+|+++..|+       
T Consensus       385 ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiP--------rG~alG~t~~~Pe-------  449 (596)
T COG0465         385 EAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIP--------RGRALGYTLFLPE-------  449 (596)
T ss_pred             HHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeecc--------CchhhcchhcCCc-------
Confidence            47799999954  5678999999999999999999999995  999999999        44 3566665544       


Q ss_pred             HhhhcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhC-C-ccchhhHHHHHHHHHHH----hCCCc-------
Q 019873          191 ARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFG-H-SEGHYSDINKLDKVFQW----LGYNK-------  257 (334)
Q Consensus       191 ~r~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG-~-atGg~~Dl~qat~l~r~----lGms~-------  257 (334)
                            +        |++.+|++++...++++|||||||+++|| + ++|+++|++++|+++|.    ||||.       
T Consensus       450 ------~--------d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~  515 (596)
T COG0465         450 ------E--------DKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDLARAMVTEYGMSAKLGPVAY  515 (596)
T ss_pred             ------c--------ccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHHHHHhhhhcCcchhhCceeh
Confidence                  1        58999999999999999999999999999 7 57999999999999885    78884       


Q ss_pred             ----------------------chhHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHhc
Q 019873          258 ----------------------SEADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKILT  304 (334)
Q Consensus       258 ----------------------~~id~evr----~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie~  304 (334)
                                            ..||.+++    .||.+++.||.+|++.++.++++|+++||+.  +..++++.
T Consensus       516 ~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~~~~l~~~~~~Lle~Eti~~~~i~~i~~~  590 (596)
T COG0465         516 EQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNENKDALETLAEMLLEKETIDAEEIKDILAG  590 (596)
T ss_pred             hhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccCHHHHHHHHhc
Confidence                                  12566654    6999999999999999999999999999985  44444443

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=5.9e-22  Score=208.90  Aligned_cols=200  Identities=18%  Similarity=0.162  Sum_probs=153.6

Q ss_pred             hchhhhhhhhhhhhhhHHHHHhhh-----------hhccccccc-chhhHHhhccc--CCCCChhHHHHHHHHhHHHHHH
Q 019873           83 DSKELLTLRALFDSVMESIERCNL-----------FDSLDEAPS-DTVESIVEDGS--YVSLKEEDHFMCVQHEAGHFLT  148 (334)
Q Consensus        83 ~~it~~~ll~P~~~~s~~i~~~~~-----------~~~l~~~t~-D~~~~llld~~--~r~ls~eer~RIA~HEAGHaLV  148 (334)
                      +.++++.+-.-.-+.+++..++.+           -..++...+ |+++.++.+..  ++.+++++++.+|||||||+++
T Consensus       503 e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~  582 (774)
T KOG0731|consen  503 EDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVV  582 (774)
T ss_pred             chhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhh
Confidence            455555555555556666666543           111111111 36677777643  5778999999999999999999


Q ss_pred             HHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhhhcccCCCCCCCCcccccCHHHHHHHHHHHhhHH
Q 019873          149 GYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGL  226 (334)
Q Consensus       149 AyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGr  226 (334)
                      +++++  .|+-++||+|      |+ .. |+.+..|.                      +.+.+|+++|...+|++||||
T Consensus       583 g~~l~~~dpl~kvsIiP------Gq-al-G~a~~~P~----------------------~~~l~sk~ql~~rm~m~LGGR  632 (774)
T KOG0731|consen  583 GWLLEHADPLLKVSIIP------GQ-AL-GYAQYLPT----------------------DDYLLSKEQLFDRMVMALGGR  632 (774)
T ss_pred             hccccccCcceeEEecc------CC-cc-ceEEECCc----------------------ccccccHHHHHHHHHHHhCcc
Confidence            98888  4999999999      53 33 44444333                      348999999999999999999


Q ss_pred             HHHHHHhC-C-ccchhhHHHHHHHHHHH----hCCCcc--------------------------hhHHHHH----HHHHH
Q 019873          227 VAEHLVFG-H-SEGHYSDINKLDKVFQW----LGYNKS--------------------------EADSQVK----WAALN  270 (334)
Q Consensus       227 AAE~LvfG-~-atGg~~Dl~qat~l~r~----lGms~~--------------------------~id~evr----~A~~~  270 (334)
                      |||+++|| + ++|++||++++|++++.    +|||+.                          .||.+++    .||+.
T Consensus       633 aAEev~fg~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id~ev~~lv~~ay~~  712 (774)
T KOG0731|consen  633 AAEEVVFGSEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLIDTEVRRLVQKAYER  712 (774)
T ss_pred             hhhheecCCccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHHHHHHHHHhhHHHH
Confidence            99999998 4 57999999999999885    788731                          3677765    49999


Q ss_pred             HHHHHHHcHHHHHHHHHHHHhhCcH--HHHHHHHhchhhhhhhh
Q 019873          271 TVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILTEQSLELLR  312 (334)
Q Consensus       271 A~~LL~~hr~aleaLAeaL~e~esl--~eci~~Ie~~~~~~~l~  312 (334)
                      |..+|++|++.++.+|+.|+++++|  +++++++...-+.+++.
T Consensus       713 ~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~~~  756 (774)
T KOG0731|consen  713 TKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMPEK  756 (774)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccccc
Confidence            9999999999999999999999988  49999998877765433

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.59  E-value=7.5e-08  Score=110.55  Aligned_cols=109  Identities=13%  Similarity=-0.022  Sum_probs=75.3

Q ss_pred             hhhHHhhcccCCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCc-hhhhcccccccceeEEecchhhHHHHHHhh
Q 019873          117 TVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPS-VEALKQDDFTVGRVQFVGFDFLKEVADARK  193 (334)
Q Consensus       117 ~~~~llld~~~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p-~eal~~G~~g~gGv~f~~~e~~~e~~e~r~  193 (334)
                      ++.+.+.|...+..+.+++ +||+||+|||+|+.++.  .||.++||.+ -..++.|  ...|+++..+.          
T Consensus      1873 Al~Rq~~g~~~~~~~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~--~~yl~~wyle~---------- 1939 (2281)
T CHL00206       1873 ALHRQTWDLRSQVRSVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEG--DSYLYKWYFEL---------- 1939 (2281)
T ss_pred             HHHHHHhhhhhcccCcchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCc--ccceeEeecCC----------
Confidence            5577777755555455555 48999999999999986  6999999843 2333333  22244443321          


Q ss_pred             hcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCCc-------c--ch-hhHHHHHHHHHH
Q 019873          194 QKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGHS-------E--GH-YSDINKLDKVFQ  251 (334)
Q Consensus       194 ~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~a-------t--Gg-~~Dl~qat~l~r  251 (334)
                                   ...+++.++..+++++|||+|||.+.|...       +  |- .+|+.-+-.++.
T Consensus      1940 -------------~~~mkk~tiL~~Il~cLAGraAedlwf~~~~~~~n~It~yg~vEnD~~La~glLe 1994 (2281)
T CHL00206       1940 -------------GTSMKKLTILLYLLSCSAGSVAQDLWSLPGPDEKNGITSYGLVENDSDLVHGLLE 1994 (2281)
T ss_pred             -------------cccCCHHHHHHHHHHHhhhhhhhhhccCcchhhhcCcccccchhhhhHHhHhHHH
Confidence                         257899999999999999999999999532       1  21 356666666655

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=96.72  E-value=0.0011  Score=60.14  Aligned_cols=25  Identities=40%  Similarity=0.700  Sum_probs=22.6

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceec
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      -|..||.||+++|...|++|.++++
T Consensus        11 ~v~iHElGH~~~Ar~~Gv~v~~f~i   35 (182)
T cd06163          11 LIFVHELGHFLVAKLFGVKVEEFSI   35 (182)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEeee
Confidence            4789999999999999999998765

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=95.80  E-value=0.014  Score=54.61  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|..+|.+++++++.|
T Consensus        55 ~v~iHElgH~~~A~~~G~~v~~i~l~p   81 (227)
T cd06164          55 SVLLHELGHSLVARRYGIPVRSITLFL   81 (227)
T ss_pred             HHHHHHHHHHHHHHHcCCeECeEEEEe
Confidence            588999999999999999999999987

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>TIGR00054 RIP metalloprotease RseP

Probab=95.79  E-value=0.0079  Score=60.69  Aligned_cols=25  Identities=36%  Similarity=0.659  Sum_probs=22.3

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceec
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      .|..||.||||+|...|+.|..++|
T Consensus        16 ~v~~HE~gH~~~a~~~g~~v~~Fsi   40 (420)
T TIGR00054        16 LIFVHELGHFLAARLCGIKVERFSI   40 (420)
T ss_pred             HHHHHhHHHHHHHHHcCCEEEEEEE
Confidence            5899999999999999998887666

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=95.47  E-value=0.015  Score=53.16  Aligned_cols=27  Identities=33%  Similarity=0.397  Sum_probs=25.5

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|.++|.-++++++.|
T Consensus        24 ~t~~HE~gHal~a~l~G~~v~~i~l~~   50 (200)
T PF13398_consen   24 VTFVHELGHALAALLTGGRVKGIVLFP   50 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEEEe
Confidence            489999999999999999999999987

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=95.00  E-value=0.014  Score=59.19  Aligned_cols=26  Identities=31%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecC
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIP  162 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~  162 (334)
                      .|..||.||||+|.+.|+.|..++|.
T Consensus        17 li~vHElGHfl~Ar~~gv~V~~FsiG   42 (449)
T PRK10779         17 LITVHEFGHFWVARRCGVRVERFSIG   42 (449)
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEEEee
Confidence            58899999999999999999999884

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=94.98  E-value=0.023  Score=50.20  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=20.8

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceec
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      -+..||.||+++|+..|+++...++
T Consensus        10 ~i~iHE~gH~~~A~~~G~~~~~~~~   34 (180)
T cd05709          10 SVTVHELGHALVARRLGVKVARFSG   34 (180)
T ss_pred             HHHHHHHHHHHHHHHcCCCchheee
Confidence            3789999999999999997765544

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=94.52  E-value=0.059  Score=52.43  Aligned_cols=27  Identities=30%  Similarity=0.238  Sum_probs=24.3

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|...|++|+++.+.+
T Consensus       137 svvvHElgHal~A~~~gi~V~~iGl~l  163 (277)
T cd06162         137 SGVVHEMGHGVAAVREQVRVNGFGIFF  163 (277)
T ss_pred             HHHHHHHHHHHHHHHcCCeeceEEEee
Confidence            478999999999999999999988764

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=94.32  E-value=0.031  Score=51.30  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=25.6

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|..+|.+++++++.|
T Consensus        40 ~v~iHElgH~~~A~~~G~~v~~i~l~p   66 (208)
T cd06161          40 SVLLHELGHALVARRYGIRVRSITLLP   66 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCccceEEEe
Confidence            589999999999999999999999987

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.52  E-value=0.048  Score=48.30  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecC
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIP  162 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~  162 (334)
                      -+..||.||+++|+..|.++..+++.
T Consensus         9 ~i~~HE~gH~~~a~~~G~~~~~~~~~   34 (192)
T PF02163_consen    9 SIVLHELGHALAARLYGDKVPRFEGG   34 (192)
T ss_dssp             HHHHHHHHHHHHHHTTT--B--EEE-
T ss_pred             cccccccccccccccccccccccccc
Confidence            37899999999999999988888543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=91.45  E-value=0.16  Score=46.32  Aligned_cols=27  Identities=26%  Similarity=0.230  Sum_probs=24.7

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|...|++++...+.|
T Consensus        43 ~l~iHElgH~~~A~~~G~~~~~~~l~P   69 (183)
T cd06160          43 ILGIHEMGHYLAARRHGVKASLPYFIP   69 (183)
T ss_pred             HHHHHHHHHHHHHHHCCCCccceeeee
Confidence            578999999999999999999888877

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=88.03  E-value=0.37  Score=43.64  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=21.1

Q ss_pred             HHHHhHHHHHHHHHhCCCCCc----eecCc
Q 019873          138 CVQHEAGHFLTGYLLGVLPKG----YEIPS  163 (334)
Q Consensus       138 IA~HEAGHaLVAyLLgiPV~g----yTI~p  163 (334)
                      +..||.||+++|+..|++..+    .|+.|
T Consensus        12 i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp   41 (181)
T cd06158          12 ITLHEFAHAYVAYRLGDPTARRAGRLTLNP   41 (181)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHcCceecCc
Confidence            688999999999999986553    55555

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=87.62  E-value=0.31  Score=46.97  Aligned_cols=25  Identities=24%  Similarity=0.197  Sum_probs=22.0

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceec
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      -+..||.||+++|...|++|+.+.+
T Consensus       120 sv~iHElgHa~~Ar~~G~~V~~iGl  144 (263)
T cd06159         120 GVVVHELSHGILARVEGIKVKSGGL  144 (263)
T ss_pred             HHHHHHHHHHHHHHHcCCEECchhH
Confidence            4889999999999999999887654

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>PF14247 DUF4344: Domain of unknown function (DUF4344)

Probab=84.85  E-value=0.67  Score=43.78  Aligned_cols=23  Identities=35%  Similarity=0.417  Sum_probs=17.7

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCcee
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYE  160 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyT  160 (334)
                      -|.+||.||+|+..+ ++||.|-.
T Consensus        94 ~~l~HE~GHAlI~~~-~lPv~GrE  116 (220)
T PF14247_consen   94 FTLYHELGHALIDDL-DLPVLGRE  116 (220)
T ss_pred             HHHHHHHHHHHHHHh-cCCcccch
Confidence            489999999999864 57766543

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=82.07  E-value=0.64  Score=39.24  Aligned_cols=17  Identities=35%  Similarity=0.399  Sum_probs=14.4

Q ss_pred             ChhHHHHHHHHhHHHHH
Q 019873          131 KEEDHFMCVQHEAGHFL  147 (334)
Q Consensus       131 s~eer~RIA~HEAGHaL  147 (334)
                      +..+...|+.||.||+|
T Consensus       101 ~~~~~~~v~~HEiGHaL  117 (154)
T PF00413_consen  101 SGNDLQSVAIHEIGHAL  117 (154)
T ss_dssp             SSEEHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhcccccc
Confidence            55678899999999985

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 42/298 (14%), Positives = 88/298 (29%), Gaps = 64/298 (21%)

Query: 81  ELDSKELL-TLRALF-----DSVMESIERCN----LFDSLDEAPSDTVESIVEDG---SY 127
             D K++    +++      D ++ S +  +    LF +L     + V+  VE+    +Y
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 128 VSLKEEDHFMCVQHEAGHFLTGYLLG-------VLPKGYEIPSVE-------ALKQDDFT 173
             L         Q      +             V  K Y +  ++       AL +    
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELR-- 148

Query: 174 VGRVQFV------GFDFLKEV------ADARKQKKDTGQVGSW---GNRGEIS--VKTLN 216
               + V      G    K           + Q K   ++  W    N       ++ L 
Sbjct: 149 --PAKNVLIDGVLGSG--KTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQ 203

Query: 217 NFSCVILGGLVAEHLVFGHSEGHYSDI-NKLDKVFQWLGYNKS------EADSQVKWAAL 269
                I     +      + +     I  +L ++ +   Y           +++  W A 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAF 262

Query: 270 N---TVLISHHHIQVRSRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLS-FPH 323
           N    +L++    QV   L+ A     S+  ++  +  ++   LL    +      P 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 6e-04
 Identities = 62/410 (15%), Positives = 126/410 (30%), Gaps = 109/410 (26%)

Query: 10  GGELVAASGKE--AEYAKRRRQALKRVDRE---LSRGNFKVALSLVKQLQR-----KPAG 59
            G     SGK   A       +   ++D +   L+  N     ++++ LQ+      P  
Sbjct: 159 LG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 60  GLRGFGAAK------QVPKRLSSLDESELDSKELLTLRALFDSVMESIE----RCN-LFD 108
             R   ++        +   L  L +S+     LL L  + ++  ++       C  L  
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSCKILLT 271

Query: 109 SLDEAPSDTVESIVEDGSYVSLKEEDHFMCVQHEAGHFLTGYL---LGVLPKGYEIPSV- 164
           +  +  +D + +     +++SL      +    E    L  YL      LP+  E+ +  
Sbjct: 272 TRFKQVTDFLSAATT--THISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPR--EVLTTN 326

Query: 165 --------EALKQDDFTVGRVQFVGFDFLKEV----------ADARKQKKD--------- 197
                   E+++    T    + V  D L  +          A+ RK             
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 198 -TGQVGS--WGNRG----EISVKTLNNFSCV----------ILGGLV-----AEHLVFGH 235
               + S  W +       + V  L+ +S V          I    +      E+    H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 236 SE--GHYSDINKLDK-----------VFQWLGYNKSEADSQVKWAALNTVLISHHHIQVR 282
                HY+     D             +  +G++    +   +      V +    ++ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 283 SRLAEAMALGRSIGSYTSKILTEQSLELLRSRTNVTLSFPHLLGKQRLVN 332
            R         +  +  S + T Q L+  +    +  + P     +RLVN
Sbjct: 507 IRHD-----STAWNASGSILNTLQQLKFYKPY--ICDNDPKY---ERLVN 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
2di4_A	238	Zinc protease, cell division protein FTSH homolog;	100.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.93
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.91
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	94.21

>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1

Probab=100.00  E-value=4.8e-34  Score=264.96  Aligned_cols=151  Identities=19%  Similarity=0.161  Sum_probs=120.8

Q ss_pred             CCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhhhcccCCCCCCC
Q 019873          127 YVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSW  204 (334)
Q Consensus       127 ~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~~~~d~~~~~~~  204 (334)
                      ++.+|+++|++||||||||||||++++  .||++|||+|+     | + .+|+++..|+             +       
T Consensus         8 ~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR-----G-~-alG~t~~~P~-------------e-------   60 (238)
T 2di4_A            8 HMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-----G-M-ALGVTQQLPI-------------E-------   60 (238)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC------------------------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec-----C-C-cceEEEeCCc-------------c-------
Confidence            467899999999999999999999999  79999999992     3 1 2344333222             1       


Q ss_pred             CcccccCHHHHHHHHHHHhhHHHHHHHHh--CC-ccchhhHHHHHHHHHHH----hCCCcc-------------------
Q 019873          205 GNRGEISVKTLNNFSCVILGGLVAEHLVF--GH-SEGHYSDINKLDKVFQW----LGYNKS-------------------  258 (334)
Q Consensus       205 ~~~~~~t~~~L~r~~~VlLAGrAAE~Lvf--G~-atGg~~Dl~qat~l~r~----lGms~~-------------------  258 (334)
                       +++.+|+++|.+.++|+|||||||+|+|  |+ ++|++||++++|+|++.    ||||+.                   
T Consensus        61 -d~~~~tk~~l~~~i~v~LgGRaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~  139 (238)
T 2di4_A           61 -DKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTT  139 (238)
T ss_dssp             --CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------C
T ss_pred             -cccccCHHHHHHHHHHHHhHHHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCcccccccccc
Confidence             5788999999999999999999999999  55 68999999999999875    899852                   


Q ss_pred             ----------hhHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHhhCcH--HHHHHHHhch
Q 019873          259 ----------EADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILTE  305 (334)
Q Consensus       259 ----------~id~evr----~A~~~A~~LL~~hr~aleaLAeaL~e~esl--~eci~~Ie~~  305 (334)
                                .+|.+++    +||.+|++||++|++.+++||++|++++||  +++.++|+..
T Consensus       140 ~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~  202 (238)
T 2di4_A          140 AVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  202 (238)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence                      2456654    899999999999999999999999999999  5888888653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.93  E-value=2.9e-25  Score=222.58  Aligned_cols=151  Identities=18%  Similarity=0.199  Sum_probs=118.5

Q ss_pred             CCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhhhcccCCCCCCC
Q 019873          127 YVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSW  204 (334)
Q Consensus       127 ~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~~~~d~~~~~~~  204 (334)
                      ...++++++++++|||+||++++++++  .|++++||.|     +|. ..+|+++..|+             +       
T Consensus       264 ~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~p-----rg~-~alg~~~~~p~-------------~-------  317 (476)
T 2ce7_A          264 SLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIP-----RGY-KALGYTLHLPE-------------E-------  317 (476)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC------------------------------------------
T ss_pred             chhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeec-----Ccc-cccceEEEcCc-------------c-------
Confidence            346799999999999999999999998  6999999999     221 12333332221             1       


Q ss_pred             CcccccCHHHHHHHHHHHhhHHHHHHHHhCC-ccchhhHHHHHHHHHHH----hCCCcc---------------------
Q 019873          205 GNRGEISVKTLNNFSCVILGGLVAEHLVFGH-SEGHYSDINKLDKVFQW----LGYNKS---------------------  258 (334)
Q Consensus       205 ~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~-atGg~~Dl~qat~l~r~----lGms~~---------------------  258 (334)
                       +++.+|+.+|.+.++|+|||||||+++||+ ++|++||++++|++++.    ||||+.                     
T Consensus       318 -~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~  396 (476)
T 2ce7_A          318 -DKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITR  396 (476)
T ss_dssp             --CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------
T ss_pred             -cccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccc
Confidence             578899999999999999999999999998 47999999999999875    788751                     


Q ss_pred             ----------hhHHHHH----HHHHHHHHHHHHcHHHHHHHHHHHHhhCcH--HHHHHHHhc
Q 019873          259 ----------EADSQVK----WAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILT  304 (334)
Q Consensus       259 ----------~id~evr----~A~~~A~~LL~~hr~aleaLAeaL~e~esl--~eci~~Ie~  304 (334)
                                .+|.+++    .||.+|++||++|++.+++||++|+++|||  +++.++++.
T Consensus       397 ~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~  458 (476)
T 2ce7_A          397 LRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE  458 (476)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC-
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcc
Confidence                      1455554    799999999999999999999999999999  588888765

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.91  E-value=1.9e-24  Score=217.74  Aligned_cols=163  Identities=18%  Similarity=0.161  Sum_probs=132.6

Q ss_pred             hhhHHhhcc--cCCCCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHh
Q 019873          117 TVESIVEDG--SYVSLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADAR  192 (334)
Q Consensus       117 ~~~~llld~--~~r~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r  192 (334)
                      ++..++...  .++.+++++|++++|||+||++|+|+++  .||+++||.|     +|  ...|+.+  |   ++.    
T Consensus       267 al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~p-----r~--~~~g~~~--p---~q~----  330 (499)
T 2dhr_A          267 AADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVP-----RG--RALGFMM--P---RRE----  330 (499)
T ss_dssp             HHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCC-----SS--CTTCSSH--H---HHT----
T ss_pred             HHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeec-----CC--CcCcccc--c---chh----
Confidence            345555542  2456899999999999999999999997  5999999999     22  2345444  2   111    


Q ss_pred             hhcccCCCCCCCCcccccCHHHHHHHHHHHhhHHHHHHHHhCC-ccchhhHHHHHHHHHHH----hCCCcc---------
Q 019873          193 KQKKDTGQVGSWGNRGEISVKTLNNFSCVILGGLVAEHLVFGH-SEGHYSDINKLDKVFQW----LGYNKS---------  258 (334)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~t~~~L~r~~~VlLAGrAAE~LvfG~-atGg~~Dl~qat~l~r~----lGms~~---------  258 (334)
                                   +.+.+|+.++...++++|||||||+++||+ ++|++||++++|++++.    ||||++         
T Consensus       331 -------------~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~  397 (499)
T 2dhr_A          331 -------------DMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVR  397 (499)
T ss_dssp             -------------TCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCC
T ss_pred             -------------hhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCC
Confidence                         578899999999999999999999999998 57999999999999885    788752         


Q ss_pred             -------------------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcH--HHHHHHHhchhhh
Q 019873          259 -------------------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSI--GSYTSKILTEQSL  308 (334)
Q Consensus       259 -------------------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl--~eci~~Ie~~~~~  308 (334)
                                         .+|.++    .+||.+|++||++|++.+++||++|+++|||  +++.++++.....
T Consensus       398 ~~~~~~~~~~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~  472 (499)
T 2dhr_A          398 EDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLE  472 (499)
T ss_dssp             CCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCC
T ss_pred             CccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCC
Confidence                               145554    4799999999999999999999999999999  5888888875443

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=94.21  E-value=0.022  Score=51.87  Aligned_cols=27  Identities=26%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             HHHHHhHHHHHHHHHhCCCCCceecCc
Q 019873          137 MCVQHEAGHFLTGYLLGVLPKGYEIPS  163 (334)
Q Consensus       137 RIA~HEAGHaLVAyLLgiPV~gyTI~p  163 (334)
                      -+..||.||+++|+..|++++++++.|
T Consensus        50 ~v~~HElgH~~~A~~~G~~~~~i~l~p   76 (224)
T 3b4r_A           50 SVVLHELGHSYVAKKYGVKIEKILLLP   76 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCEEECS
T ss_pred             HHHHHHHHHHHHHHHcCCccccEEEEE
Confidence            478899999999999999999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d2ce7a1	193	Cell division protein FtsH, C-terminal domain {The	99.97
d2di4a1	202	Cell division protein FtsH, C-terminal domain {Aqu	99.97
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	84.42
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	84.32
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	80.89

>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=7.7e-31  Score=229.78  Aligned_cols=148  Identities=18%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             CCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhhhcccCCCCCCCCc
Q 019873          129 SLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGN  206 (334)
Q Consensus       129 ~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~~~~d~~~~~~~~~  206 (334)
                      ++||++|+||||||||||+||++++  .||.++||.|     ++ .+.+|+....++             +        +
T Consensus         1 ~ls~~er~~vA~HEAGHAlva~~l~~~~~i~~vsI~~-----r~-~~~~g~~~~~~~-------------~--------~   53 (193)
T d2ce7a1           1 LISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIP-----RG-YKALGYTLHLPE-------------E--------D   53 (193)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC--------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEec-----Cc-cCCCceeecCCc-------------c--------c
Confidence            3799999999999999999999996  5899999998     11 122343322221             1        4


Q ss_pred             ccccCHHHHHHHHHHHhhHHHHHHHHhCC-ccchhhHHHHHHHHHHH----hCCCcc-----------------------
Q 019873          207 RGEISVKTLNNFSCVILGGLVAEHLVFGH-SEGHYSDINKLDKVFQW----LGYNKS-----------------------  258 (334)
Q Consensus       207 ~~~~t~~~L~r~~~VlLAGrAAE~LvfG~-atGg~~Dl~qat~l~r~----lGms~~-----------------------  258 (334)
                      ++..|++++.+.++|+|||||||+++||+ ++|+++|++++|++++.    |||+..                       
T Consensus        54 ~~~~t~~~l~~~i~v~LaGraAE~~~~g~~s~Ga~~Dl~~At~lA~~~v~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~  133 (193)
T d2ce7a1          54 KYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLR  133 (193)
T ss_dssp             CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCcHHHHHHHHHHHHHhhCcCCCcCceeeccCCccccccccccccc
Confidence            66789999999999999999999999998 47999999999999885    688742                       


Q ss_pred             --------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHh
Q 019873          259 --------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKIL  303 (334)
Q Consensus       259 --------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie  303 (334)
                              .++.++    +.|+.+|+++|++|++.+++||+.|+++++|.  +..++|.
T Consensus       134 ~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~e~L~g~ei~~il~  192 (193)
T d2ce7a1         134 NYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILS  192 (193)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHHc
Confidence                    144554    46999999999999999999999999999995  5555553

>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All alpha proteins
fold: FtsH protease domain-like
superfamily: FtsH protease domain-like
family: FtsH protease domain-like
domain: Cell division protein FtsH, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=1.3e-30  Score=229.45  Aligned_cols=149  Identities=19%  Similarity=0.235  Sum_probs=118.1

Q ss_pred             CCChhHHHHHHHHhHHHHHHHHHhC--CCCCceecCchhhhcccccccceeEEecchhhHHHHHHhhhcccCCCCCCCCc
Q 019873          129 SLKEEDHFMCVQHEAGHFLTGYLLG--VLPKGYEIPSVEALKQDDFTVGRVQFVGFDFLKEVADARKQKKDTGQVGSWGN  206 (334)
Q Consensus       129 ~ls~eer~RIA~HEAGHaLVAyLLg--iPV~gyTI~p~eal~~G~~g~gGv~f~~~e~~~e~~e~r~~~~d~~~~~~~~~  206 (334)
                      .+||++|+||||||||||+||++++  .||.++||.|+     | ...|++.+.+.+                      +
T Consensus         1 ~ls~~ek~~vA~HEAGHAvva~~l~~~~~v~~vtI~pr-----g-~~~g~~~~~~~~----------------------~   52 (202)
T d2di4a1           1 TISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-----G-MALGVTQQLPIE----------------------D   52 (202)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC--------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEecC-----C-ccccccccCccc----------------------c
Confidence            3699999999999999999999998  58999999992     2 233444443322                      4


Q ss_pred             ccccCHHHHHHHHHHHhhHHHHHHHHhCC---ccchhhHHHHHHHHHHH----hCCCcc---------------------
Q 019873          207 RGEISVKTLNNFSCVILGGLVAEHLVFGH---SEGHYSDINKLDKVFQW----LGYNKS---------------------  258 (334)
Q Consensus       207 ~~~~t~~~L~r~~~VlLAGrAAE~LvfG~---atGg~~Dl~qat~l~r~----lGms~~---------------------  258 (334)
                      ....|+.++.+.++|+|||||||+++||.   ++|+.+|+++++++++.    |||+..                     
T Consensus        53 ~~~~t~~~l~~~i~v~LgGraAE~i~~g~~~~~~g~~~dl~~At~~A~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  132 (202)
T d2di4a1          53 KHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAV  132 (202)
T ss_dssp             CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCC
T ss_pred             cchhhHHHHHHHHHHHHhhhhcceeeecCcccccCccchHHHHHHHHHHHHHhhCcccccchhhhcccccchhhhhhccc
Confidence            56789999999999999999999999996   57999999999999875    687631                     


Q ss_pred             --------hhHHHH----HHHHHHHHHHHHHcHHHHHHHHHHHHhhCcHH--HHHHHHhch
Q 019873          259 --------EADSQV----KWAALNTVLISHHHIQVRSRLAEAMALGRSIG--SYTSKILTE  305 (334)
Q Consensus       259 --------~id~ev----r~A~~~A~~LL~~hr~aleaLAeaL~e~esl~--eci~~Ie~~  305 (334)
                              .+|.++    .+|+.+|++||++|++.+++||++|++++||+  ++.++|+..
T Consensus       133 ~~s~~~~~~id~ev~~ll~~a~~~a~~iL~~~~~~l~~la~~Lle~etL~~~ei~~il~~~  193 (202)
T d2di4a1         133 DTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY  193 (202)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHHHC
Confidence                    245554    47999999999999999999999999999995  788888765

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.17  Score=39.26  Aligned_cols=17  Identities=35%  Similarity=0.475  Sum_probs=14.2

Q ss_pred             ChhHHHHHHHHhHHHHH
Q 019873          131 KEEDHFMCVQHEAGHFL  147 (334)
Q Consensus       131 s~eer~RIA~HEAGHaL  147 (334)
                      +..+...|+.||.||+|
T Consensus       102 ~~~~~~~v~~HEiGHaL  118 (157)
T d1hfca_         102 REYNLHRVAAHELGHSL  118 (157)
T ss_dssp             SSCBHHHHHHHHHHHHH
T ss_pred             ccchhhhhHhhhhhhhc
Confidence            45667789999999986

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.32  E-value=0.17  Score=39.40  Aligned_cols=28  Identities=32%  Similarity=0.389  Sum_probs=19.1

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhCCCCCceec
Q 019873          131 KEEDHFMCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       131 s~eer~RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      +..+...|+.||.||+|=   |+.|-...+|
T Consensus       113 ~~~~~~~v~~HEiGHaLG---L~H~~~~~sv  140 (169)
T d1rm8a_         113 DGNDLFLVAVHELGHALG---LEHSNDPTAI  140 (169)
T ss_dssp             SSEEHHHHHHHHHHHHHT---CCCCSCTTST
T ss_pred             Ccchhhhhhhhhhhhhhc---CCCCCCCCce
Confidence            556788999999999973   3444433333

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.89  E-value=0.27  Score=39.00  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=18.7

Q ss_pred             ChhHHHHHHHHhHHHHHHHHHhCCCCCceec
Q 019873          131 KEEDHFMCVQHEAGHFLTGYLLGVLPKGYEI  161 (334)
Q Consensus       131 s~eer~RIA~HEAGHaLVAyLLgiPV~gyTI  161 (334)
                      +..+...|+.||.||+|=   |+.|-...+|
T Consensus       110 ~~~~~~~v~~HEiGHaLG---L~H~~~~~sv  137 (166)
T d1mmqa_         110 LGINFLYAATHELGHSLG---MGHSSDPNAV  137 (166)
T ss_dssp             SSEEHHHHHHHHHHHHHT---BCCCSCTTST
T ss_pred             ccchhhhhhhhhhccccC---CCCCCCCCCe
Confidence            445677899999999973   3445444333