Citrus Sinensis ID: 019880

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccEEEEEccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHcccccccccccEEEEccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEccEEEEcccccEEccccccccccEEEEEccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHccHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHHHHHHcccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHccHHHHHHEEEccccHHHHHHHHccHHHcccHcEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEccccccEEcccccccccEEEEEEEccccccccccccEccccHcHccc
MAHQEEIKQFQTLMEDLDDSLKETFKnvhqgnptDTLVRFLKARDWNVSKAHKMLVDCLRWRIENdidnilakpilpaeLYRAVrdsqlvgvsgyskeglpVIAVGVGLSTHDKASVNYYVQSHIQMneyrdrvvlpsaskkhgryigtSLKVLDMTGLKLSALNQIKLMTVITtiddlnypektetyyivnapYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDyaslphfcrkegsgssrhigngttencfslDHAFHQRLYNYIKQQAVLtesvvpirqgsfhvdfpepdpegaKITKKIESEFhrigdknglinslnglkvdg
MAHQEEIKQFQTLMEDLDDSLKETFknvhqgnptDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLpsaskkhgryigtslkvldMTGLKLSALNQIKLMTVIttiddlnypEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQvlqgngrdeLLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSfhvdfpepdpEGAKITKKIESefhrigdknglinslnglkvdg
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
*******************************NPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRK*******HIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDF**************************************
*AHQEEIKQFQTLME*******ETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNY**********************FPEPDPEGAKITKKIESEFHRIGDKNGLINSLN******
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINS********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPDPEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
P46250301 SEC14 cytosolic factor OS N/A no 0.580 0.644 0.314 1e-18
Q75DK1308 SEC14 cytosolic factor OS yes no 0.649 0.704 0.286 3e-18
P24280304 SEC14 cytosolic factor OS yes no 0.637 0.700 0.272 3e-16
Q92503 715 SEC14-like protein 1 OS=H yes no 0.640 0.299 0.277 4e-16
P33324310 CRAL-TRIO domain-containi no no 0.646 0.696 0.271 7e-16
Q0V9N0 707 SEC14-like protein 5 OS=X yes no 0.667 0.315 0.273 8e-16
P58875403 SEC14-like protein 2 OS=B no no 0.748 0.620 0.287 1e-15
P45816 492 SEC14 cytosolic factor OS yes no 0.619 0.420 0.308 1e-15
P24859301 SEC14 cytosolic factor OS yes no 0.652 0.724 0.264 1e-15
Q9UDX3406 SEC14-like protein 4 OS=H no no 0.568 0.467 0.316 2e-15
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 112/213 (52%), Gaps = 19/213 (8%)

Query: 36  TLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILA------KPIL----PAELYRAVR 85
           +L+RFL+AR +++ KA  M V C +WR +  ++ IL       KPI+    P   ++  +
Sbjct: 57  SLLRFLRARKFDIQKAIDMFVACEKWREDFGVNTILKDFHYEEKPIVAKMYPTYYHKTDK 116

Query: 86  DSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGR 145
           D + V      K  L  +   + ++T ++   N  V  +  M +YR    LP+ S+K G 
Sbjct: 117 DGRPVYFEELGKVDLVKM---LKITTQERMLKNL-VWEYEAMCQYR----LPACSRKAGY 168

Query: 146 YIGTSLKVLDMTGLKL-SALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204
            + TS  VLD++G+ + SA N I  +   + I    YPE+   +Y++NAP+ FS  +K+ 
Sbjct: 169 LVETSCTVLDLSGISVTSAYNVIGYVREASKIGQDYYPERMGKFYLINAPFGFSTAFKLF 228

Query: 205 KPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 237
           KP L   T  K+ +L  + + ELLK +   +LP
Sbjct: 229 KPFLDPVTVSKIHILGYSYKKELLKQIPPQNLP 261
Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.
Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function description
>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2 Back     alignment and function description
>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1 Back     alignment and function description
>sp|P58875|S14L2_BOVIN SEC14-like protein 2 OS=Bos taurus GN=SEC14L2 PE=1 SV=2 Back     alignment and function description
>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
449461049337 PREDICTED: SEC14 cytosolic factor-like [ 1.0 0.991 0.763 1e-155
225461961338 PREDICTED: SEC14-like protein 5 [Vitis v 0.997 0.985 0.781 1e-154
224061236337 predicted protein [Populus trichocarpa] 0.991 0.982 0.751 1e-152
147822313338 hypothetical protein VITISV_000011 [Viti 0.997 0.985 0.772 1e-151
356527167338 PREDICTED: SEC14 cytosolic factor-like [ 0.994 0.982 0.725 1e-148
255579158336 SEC14 cytosolic factor, putative [Ricinu 0.985 0.979 0.733 1e-147
356566393410 PREDICTED: SEC14 cytosolic factor-like [ 0.982 0.8 0.725 1e-147
297847948325 SEC14 cytosolic factor [Arabidopsis lyra 0.955 0.981 0.733 1e-145
224086324345 predicted protein [Populus trichocarpa] 0.985 0.953 0.724 1e-143
15222786325 sec.4-like phosphatidylinositol transfer 0.955 0.981 0.730 1e-143
>gi|449461049|ref|XP_004148256.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus] gi|449523143|ref|XP_004168584.1| PREDICTED: SEC14 cytosolic factor-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/334 (76%), Positives = 297/334 (88%)

Query: 1   MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
           +A++E +KQFQ LME++D SLK TF+ +HQG+P +TL RFLKARDWN++KAHKML+DCL 
Sbjct: 3   IANREAMKQFQLLMEEVDGSLKNTFEIMHQGHPAETLERFLKARDWNLAKAHKMLIDCLH 62

Query: 61  WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
           WRI+N+IDNILAKPI+P ELYRAVRDSQLVG+SGYSKEGLPVIAVGVG ST DKASV+YY
Sbjct: 63  WRIQNEIDNILAKPIIPTELYRAVRDSQLVGLSGYSKEGLPVIAVGVGQSTFDKASVHYY 122

Query: 121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
           VQSHIQMNEYRDRVVLP+A+KKHGR+I T LKVLDMTGLKLSALNQIKL+TVI+TIDDLN
Sbjct: 123 VQSHIQMNEYRDRVVLPAATKKHGRHISTCLKVLDMTGLKLSALNQIKLLTVISTIDDLN 182

Query: 181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFC 240
           YPEKT+TYYIVN PY+FSACWKVVKPLLQERTR+K+QVLQ  GRDELLKIMDYASLPHFC
Sbjct: 183 YPEKTDTYYIVNVPYVFSACWKVVKPLLQERTRKKIQVLQNCGRDELLKIMDYASLPHFC 242

Query: 241 RKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPD 300
           RKE SGSSR + NG  ENCFS D AFHQ+LYNY++QQ  + E +VPI+QGSFHVDFPEPD
Sbjct: 243 RKERSGSSRRVENGNAENCFSFDTAFHQQLYNYVQQQGAVREPIVPIKQGSFHVDFPEPD 302

Query: 301 PEGAKITKKIESEFHRIGDKNGLINSLNGLKVDG 334
           P   +I K IE+EFH++ + N L  S+NGL+V+G
Sbjct: 303 PRDVEIAKTIETEFHKLENHNALNYSMNGLQVNG 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461961|ref|XP_002270197.1| PREDICTED: SEC14-like protein 5 [Vitis vinifera] gi|296089941|emb|CBI39760.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061236|ref|XP_002300384.1| predicted protein [Populus trichocarpa] gi|222847642|gb|EEE85189.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147822313|emb|CAN64059.1| hypothetical protein VITISV_000011 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356527167|ref|XP_003532184.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|255579158|ref|XP_002530426.1| SEC14 cytosolic factor, putative [Ricinus communis] gi|223530034|gb|EEF31957.1| SEC14 cytosolic factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356566393|ref|XP_003551416.1| PREDICTED: SEC14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|297847948|ref|XP_002891855.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata] gi|297337697|gb|EFH68114.1| SEC14 cytosolic factor [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224086324|ref|XP_002307849.1| predicted protein [Populus trichocarpa] gi|222853825|gb|EEE91372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15222786|ref|NP_175980.1| sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana] gi|16930447|gb|AAL31909.1|AF419577_1 At1g55840/F14J16_2 [Arabidopsis thaliana] gi|19310517|gb|AAL84992.1| At1g55840/F14J16_2 [Arabidopsis thaliana] gi|332195185|gb|AEE33306.1| sec.4-like phosphatidylinositol transfer protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2012040325 AT1G55840 "AT1G55840" [Arabido 0.955 0.981 0.730 1.3e-130
TAIR|locus:2160892341 AT5G47730 "AT5G47730" [Arabido 0.973 0.953 0.670 7.7e-119
TAIR|locus:2115265 543 SFH12 "AT4G36490" [Arabidopsis 0.880 0.541 0.280 3.1e-20
TAIR|locus:2087293 579 AT3G24840 [Arabidopsis thalian 0.850 0.490 0.270 4.6e-20
CGD|CAL0003685301 SEC14 [Candida albicans (taxid 0.586 0.651 0.322 8.3e-19
UNIPROTKB|P46250301 SEC14 "SEC14 cytosolic factor" 0.586 0.651 0.322 8.3e-19
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.685 0.413 0.307 1e-18
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.688 0.415 0.286 2.4e-18
TAIR|locus:2042634 547 AT2G16380 [Arabidopsis thalian 0.670 0.409 0.280 4.7e-18
TAIR|locus:2053114 558 AT2G18180 "AT2G18180" [Arabido 0.679 0.406 0.296 9.9e-18
TAIR|locus:2012040 AT1G55840 "AT1G55840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 233/319 (73%), Positives = 279/319 (87%)

Query:     1 MAHQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLR 60
             + ++E +KQ + LMED+DDSL+E+++N+HQG PT+ L+RFLKARD NV KAHKML++CL 
Sbjct:     3 ITNEEAVKQLRALMEDVDDSLRESYRNIHQGYPTENLLRFLKARDGNVQKAHKMLLECLE 62

Query:    61 WRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLSTHDKASVNYY 120
             WR +N+ID IL KPI+P +LYR +RD+QLVGVSGYSKEGLPVIA+GVGLST+DKASV+YY
Sbjct:    63 WRTQNEIDKILTKPIVPVDLYRGIRDTQLVGVSGYSKEGLPVIAIGVGLSTYDKASVHYY 122

Query:   121 VQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN 180
             VQSHIQMNEYRDRVVLPSASKK GR I T LK+LDM+GLKLSAL+QIKLMT ITTIDDLN
Sbjct:   123 VQSHIQMNEYRDRVVLPSASKKQGRPICTCLKILDMSGLKLSALSQIKLMTAITTIDDLN 182

Query:   181 YPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFC 240
             YPEKTETYY+VN PYIFSACWK +KPLLQERT++K+QVL+G G+DELLKIMDY SLPHFC
Sbjct:   183 YPEKTETYYVVNVPYIFSACWKTIKPLLQERTKKKIQVLKGCGKDELLKIMDYESLPHFC 242

Query:   241 RKEGSGSSRHIGNGTTENCFSLDHAFHQRLYNYIKQQAVLTESVVPIRQGSFHVDFPEPD 300
             R+EGSGS RHI NGT +NCFSLDH+FHQ LY+Y+KQQA++  S  PIR GS HV FPEPD
Sbjct:   243 RREGSGSGRHISNGTVDNCFSLDHSFHQDLYDYVKQQALVKGSGAPIRHGSVHVKFPEPD 302

Query:   301 PEGAKITKKIESEFHRIGD 319
              EG KI   +E+EF ++G+
Sbjct:   303 TEGNKIFDTLENEFQKLGN 321
GO:0005215 "transporter activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=ISS
TAIR|locus:2160892 AT5G47730 "AT5G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115265 SFH12 "AT4G36490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087293 AT3G24840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003685 SEC14 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|P46250 SEC14 "SEC14 cytosolic factor" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042634 AT2G16380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053114 AT2G18180 "AT2G18180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-23
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 3e-22
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 1e-13
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 3e-09
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-08
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score = 94.3 bits (235), Expect = 2e-23
 Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 89  LVGVSGYSKEGLPVIAVGVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIG 148
           + G  GY K+G PV+    G       ++   ++  + + E   +       +K    I 
Sbjct: 9   IPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQ------EEKKTGGIE 62

Query: 149 TSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLL 208
               + D+ GL +S    + ++  I  I   +YPE+    YI+N P+ F   WK++KP L
Sbjct: 63  GFTVIFDLKGLSMSNP-DLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL 121

Query: 209 QERTRRKMQVLQGNGRDELLKIMDYASLPHFC 240
            E+TR K++ +  + ++ELL+ +D   LP   
Sbjct: 122 DEKTREKIRFVGNDSKEELLEYIDKEQLPEEL 153

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.92
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.5
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 99.06
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 97.96
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 89.05
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 88.1
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 80.77
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-40  Score=306.26  Aligned_cols=213  Identities=34%  Similarity=0.514  Sum_probs=188.9

Q ss_pred             CCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHHHHHHHhcccccccccCCCCCeEEEEeeCCc
Q 019880           31 GNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYRAVRDSQLVGVSGYSKEGLPVIAVGVGLS  110 (334)
Q Consensus        31 ~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l~~~l~~~~~~~~~g~Dk~G~pV~~~~~g~~  110 (334)
                      ..+|.+|+||||||+||+++|.+||.+++.||+++++|+++.+ +...   ..+.++.+.+++|.|++|+||++.+.|..
T Consensus        42 ~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~-~~~~---~~~~~~~~~~~~~~~~~g~~v~~~~~g~~  117 (317)
T KOG1471|consen   42 YDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED-FEED---DELLKYYPQGLHGVDKEGRPVYIERLGKI  117 (317)
T ss_pred             CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc-cccc---hhhhhhccccccccCCCCCEEEEeccCCC
Confidence            4568899999999999999999999999999999999999875 2211   12334677889999999999999999987


Q ss_pred             Ccc----cchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCCcccccch--hHHHHHHHHhhhccCccc
Q 019880          111 THD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEK  184 (334)
Q Consensus       111 ~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~~~--~~~~~~i~~i~~~~YPer  184 (334)
                      +..    .....+++++++..+|.....+++.+.+..+++++|++.|+||+|+++++++.  .+.++.++.+++++|||+
T Consensus       118 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~  197 (317)
T KOG1471|consen  118 DPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPER  197 (317)
T ss_pred             CcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHh
Confidence            654    46778899999999998888888877777778999999999999999999964  568899999999999999


Q ss_pred             ccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCCCcccccCCCCccccc
Q 019880          185 TETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHI  251 (334)
Q Consensus       185 l~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~LP~~~~~e~GG~~~~~  251 (334)
                      ++++||||+|++|+++|+++||||+++|++||+++++++.++|.++|++++||.+|    ||++.+.
T Consensus       198 l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~y----GG~~~~~  260 (317)
T KOG1471|consen  198 LKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEY----GGTCGDL  260 (317)
T ss_pred             hceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCcccc----CCCcccc
Confidence            99999999999999999999999999999999977778999999999999999988    9998774

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-17
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 3e-17
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 6e-17
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-14
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-14
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 2e-13
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 5e-05
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 1e-04
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 40/253 (15%)
Query: 2   AHQEEIKQFQTLMED------LDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKML 55
           A ++ + + + L+ED      LDDS               TL+RFL+AR ++V  A +M 
Sbjct: 29  AQEKALAELRKLLEDAGFIERLDDS---------------TLLRFLRARKFDVQLAKEMF 73
Query: 56  VDCLRWRIENDIDNIL------AKPIL----PAELYRAVRDSQLVGVSGYSKEGLPVIAV 105
            +C +WR +   D IL       KP++    P   ++  +D + V    Y +E   V   
Sbjct: 74  ENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPV----YFEELGAVNLH 129
Query: 106 GVGLSTHDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLS-AL 164
            +   T ++  +   V  +  + +YR    LP+ S+  G  + TS  ++D+ G+ +S A 
Sbjct: 130 EMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVETSCTIMDLKGISISSAY 185
Query: 165 NQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGR 224
           + +  +   + I    YPE+   +YI+NAP+ FS  +++ KP L   T  K+ +L  + +
Sbjct: 186 SVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQ 245
Query: 225 DELLKIMDYASLP 237
            ELLK +   +LP
Sbjct: 246 KELLKQIPAENLP 258
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 4e-66
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 9e-65
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 1e-61
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 3e-34
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 1e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
 Score =  210 bits (535), Expect = 4e-66
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 18/245 (7%)

Query: 4   QEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRI 63
           +E + QF++++ +         KN  +     TL+RFL+AR ++++ + +M V+  RWR 
Sbjct: 40  EEALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWRE 90

Query: 64  ENDIDNILAKPILPAELYRAVRDSQL----VGVSGYSKEGLPVIAVGVGLST----HDKA 115
           E   + I+       E     R               K+G P+    +G       +   
Sbjct: 91  EYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT 150

Query: 116 SVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIK-LMTVIT 174
           +    +++ ++  E      +P+ S++ G  I TS  VLD+ G+ LS    +   +  + 
Sbjct: 151 TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVA 210

Query: 175 TIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYA 234
            I    YPE+   +YI+++P+ FS  +K+VKP L   T  K+ +L  + + ELLK +   
Sbjct: 211 DISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIE 270

Query: 235 SLPHF 239
           +LP  
Sbjct: 271 NLPVK 275
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.24
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.06
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=7.5e-50  Score=383.48  Aligned_cols=275  Identities=26%  Similarity=0.417  Sum_probs=233.2

Q ss_pred             hHHHHHHHHHHHhhccHHHHHHhhhhcCCCChHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCcchhhcCCCCCHHHHH
Q 019880            3 HQEEIKQFQTLMEDLDDSLKETFKNVHQGNPTDTLVRFLKARDWNVSKAHKMLVDCLRWRIENDIDNILAKPILPAELYR   82 (334)
Q Consensus         3 ~~~~i~~lr~~l~~~~~~l~~~~~~~~~~~~d~~LlRFLra~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~l~~   82 (334)
                      .+++|++||+++++....+        ...+|.+|+||||||+||+++|.+||+++++||+++++++++.  ..+++.  
T Consensus        12 q~~~l~~lr~~l~~~~~~l--------~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~--~~~~~~--   79 (403)
T 1olm_A           12 QKEALAKFRENVQDVLPAL--------PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS--WQPPEV--   79 (403)
T ss_dssp             HHHHHHHHHHHHGGGGGGS--------SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG--SCCCHH--
T ss_pred             HHHHHHHHHHHHHhhccCC--------CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc--cCCHHH--
Confidence            4688999999999874322        2578999999999999999999999999999999999999886  233443  


Q ss_pred             HHHhcccccccccCCCCCeEEEEeeCCcCcc----cchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCC
Q 019880           83 AVRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTG  158 (334)
Q Consensus        83 ~l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g  158 (334)
                       +++....+++|+|++||||+++++|.++++    ..+.+++++++++++|...+.. +.++...|.+++++++|+||+|
T Consensus        80 -~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~g  157 (403)
T 1olm_A           80 -IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEG  157 (403)
T ss_dssp             -HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTT
T ss_pred             -HHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECCC
Confidence             344456678999999999999999998775    3678899999999999876543 4455567878999999999999


Q ss_pred             Ccccccch--hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCC
Q 019880          159 LKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASL  236 (334)
Q Consensus       159 ~~l~~~~~--~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~L  236 (334)
                      +++++++.  +++++.++.++|++||||++++||||+|++|.++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus       158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L  237 (403)
T 1olm_A          158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV  237 (403)
T ss_dssp             CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence            99999864  5678999999999999999999999999999999999999999999999999987667899999999999


Q ss_pred             CcccccCCCCcccccCCCCCCCccc---CCccchHHHHHHHHhhhh--hcccccccccCceeeecCCC
Q 019880          237 PHFCRKEGSGSSRHIGNGTTENCFS---LDHAFHQRLYNYIKQQAV--LTESVVPIRQGSFHVDFPEP  299 (334)
Q Consensus       237 P~~~~~e~GG~~~~~~~~~~~~c~~---~~~p~~~~~y~~i~~~~~--~~~~~~~~~~~~~~~~~~~~  299 (334)
                      |++|    ||++.+  +++++.|.+   .|+++|+++|  ...+..  ..+++.+.+++++.|.+++.
T Consensus       238 P~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~g~~~~v~~~v~  297 (403)
T 1olm_A          238 PVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISRGSSHQVEYEIL  297 (403)
T ss_dssp             BGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECTTCEEEEEEEEC
T ss_pred             chhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcCCCEEEEEEEEc
Confidence            9988    999988  789999985   4889999998  554422  22457788888888887765
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 3e-25
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 7e-23
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 9e-16
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 6e-14
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-13
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 4e-07
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 91  GVSGYSKEGLPVIAVGVGLST----HDKASVNYYVQSHIQMNEYRDRVVLPSASKKHGRY 146
           G+ GY  +G PV    +G          AS    +++ ++  E   +      + K GR 
Sbjct: 12  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQE-CAHQTTKLGRK 70

Query: 147 IGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 204
           + T   + D  GL L  L +  ++       + + NYPE  +  ++V AP +F   + ++
Sbjct: 71  VETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI 130

Query: 205 KPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHF 239
           KP L E TR+K+ VL  N ++ LLK +    +P  
Sbjct: 131 KPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.55
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.44
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.34
d2di0a163 Activating signal cointegrator 1 complex subunit 2 81.0
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-39  Score=281.74  Aligned_cols=184  Identities=24%  Similarity=0.396  Sum_probs=164.0

Q ss_pred             HHhcccccccccCCCCCeEEEEeeCCcCcc----cchHHHHHHHHHHHHHHHHHhcchhhhhhcCCCcceEEEEEeCCCC
Q 019880           84 VRDSQLVGVSGYSKEGLPVIAVGVGLSTHD----KASVNYYVQSHIQMNEYRDRVVLPSASKKHGRYIGTSLKVLDMTGL  159 (334)
Q Consensus        84 l~~~~~~~~~g~Dk~G~pV~~~~~g~~~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~  159 (334)
                      ++++.+.++||+|++||||+++++|+++++    ..+.+++++++++.+|...+.. ..++.+.+++++++++|+||+|+
T Consensus         5 i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~~~~~~v~~~~~I~Dl~g~   83 (199)
T d1olma3           5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEGL   83 (199)
T ss_dssp             HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccceEEEEEECCCC
Confidence            577889999999999999999999998865    3567889999999999887654 44556778899999999999999


Q ss_pred             cccccch--hHHHHHHHHhhhccCcccccceEEEcCChhhHHHHHHHcccCChhhhcceEEeCCCChhHHHhhCCCCCCC
Q 019880          160 KLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP  237 (334)
Q Consensus       160 ~l~~~~~--~~~~~~i~~i~~~~YPerl~~i~ivN~P~~f~~~~~~vkpfL~~~t~~KI~i~~~~~~~~L~~~I~~~~LP  237 (334)
                      ++++++.  +++++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++|++++||
T Consensus        84 s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP  163 (199)
T d1olma3          84 GLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP  163 (199)
T ss_dssp             CGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSB
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCC
Confidence            9999975  57889999999999999999999999999999999999999999999999999877788999999999999


Q ss_pred             cccccCCCCcccccCCCCCCCccc---CCccchHHHHHHHHh
Q 019880          238 HFCRKEGSGSSRHIGNGTTENCFS---LDHAFHQRLYNYIKQ  276 (334)
Q Consensus       238 ~~~~~e~GG~~~~~~~~~~~~c~~---~~~p~~~~~y~~i~~  276 (334)
                      ++|    ||++++  +++++.|..   .++++|+++|  +++
T Consensus       164 ~~y----GGt~~~--~~~~~~~~~~~~~~~~~p~~~~--~~~  197 (199)
T d1olma3         164 VEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRD  197 (199)
T ss_dssp             GGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCS
T ss_pred             HHh----CCCCCC--CCCChhhhccCCCCCcCCHHHh--hcc
Confidence            988    999988  688888864   4889999988  544
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure