Citrus Sinensis ID: 019909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
cccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEccccEEEEEEEccccccEEEccEEEEEEEEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccEEEEEEEEcccccccccEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEEEcccccccccccccEEEEEEEccccccccccEEEEccccccEEEEEccEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHcccccccEEcccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHcHcccccccccccccEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEccHHccccccccccEEEEEEEccccccccccEEEEccccccEEEEEEccEEccEEccccccccccccccccccHHHHHcccHHHHHHHHHHHHHcEEEEccccccccccccccccccHHHHHHHcccccEEEcccccccccccccccccccccccc
MVVSYEGCFLLVFSLLAVVASglyrnlpivpfdegyshlfghdnlvvhtdgksvhlsldertgsgfvshdlylhgffsasiklpadytAGVVVAFYMsngdmfeknhdeidfeflgnirgkdwriqtniygngstsigreerynlwfdpsddfhqysilwtdsqiifyidgipirefkrtasmggdfpakpmsLYATIwdgsdwatnggkyrvnykyapyvtefsdfvlhgcsfdpieqtsskcditesskvsiptgvspsqriKMENFRRKhmtysycydqirykvppfecvinpleaerlkvhdpvtfgggrrhhgkrhhrsrssgtkandv
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGnirgkdwriqtniygngstsigREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTsskcditesskvsiptgvspsqrikMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVtfgggrrhhgkrhhrsrssgtkandv
MVVSYEGCfllvfsllavvasGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFgggrrhhgkrhhrsrssgTKANDV
**VSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE*****************************NFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF************************
***SYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIP**VSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKV******************************
MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGG**********************
**VSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE***********SKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFG***********************
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVVSYEGCFLLVFSLLAVVASGLYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKANDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q38909332 Probable xyloglucan endot yes no 0.973 0.978 0.675 1e-133
Q8LDS2333 Probable xyloglucan endot no no 0.961 0.963 0.694 1e-131
Q38908343 Probable xyloglucan endot no no 0.913 0.889 0.575 1e-100
Q8L7H3357 Probable xyloglucan endot no no 0.877 0.820 0.542 2e-91
Q8LC45310 Probable xyloglucan endot no no 0.868 0.935 0.430 4e-69
Q9SV60292 Xyloglucan endotransgluco no no 0.844 0.965 0.439 2e-63
Q9SV61292 Putative xyloglucan endot no no 0.760 0.869 0.433 5e-59
Q9LJR7290 Xyloglucan endotransgluco no no 0.760 0.875 0.406 3e-54
Q9XIW1293 Probable xyloglucan endot no no 0.823 0.938 0.394 2e-53
Q8L9A9305 Probable xyloglucan endot no no 0.874 0.957 0.365 3e-52
>sp|Q38909|XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1 Back     alignment and function desciption
 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 267/327 (81%), Gaps = 2/327 (0%)

Query: 9   FLLVFSLLAVVASGL-YRNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFV 67
           FL+  SL   + SG   + LP++ FDEGY+ LFG  NL+VH DGKSV L+LDERTGSGFV
Sbjct: 7   FLVFMSLFTSLVSGFALQKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFV 66

Query: 68  SHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQT 127
           S+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG++WRIQT
Sbjct: 67  SNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQT 126

Query: 128 NIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDF 187
           NIYGNGST +GREERYNLWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTASMGGDF
Sbjct: 127 NIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDF 186

Query: 188 PAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT 247
           PAKPMSLY+TIWDGS WAT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C   
Sbjct: 187 PAKPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDE 245

Query: 248 ESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDP 307
               + + + ++ SQR KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+RL+V+DP
Sbjct: 246 AVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDP 305

Query: 308 VTFGGGRRHHGKRHHRSRSSGTKANDV 334
           VTFGG    H +  HRSRS   +   +
Sbjct: 306 VTFGGIPHGHRRGKHRSRSRLARTESI 332
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q8LDS2|XTH27_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2 Back     alignment and function description
>sp|Q38908|XTH30_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7H3|XTH29_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1 Back     alignment and function description
>sp|Q8LC45|XTH33_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2 Back     alignment and function description
>sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9LJR7|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
255573236338 Xyloglucan endotransglucosylase/hydrolas 0.985 0.973 0.786 1e-148
356512283338 PREDICTED: probable xyloglucan endotrans 0.904 0.893 0.786 1e-144
449504255333 PREDICTED: probable xyloglucan endotrans 0.937 0.939 0.773 1e-144
224099595336 predicted protein [Populus trichocarpa] 0.964 0.958 0.807 1e-144
224111404336 predicted protein [Populus trichocarpa] 0.922 0.916 0.796 1e-144
124109193336 xyloglucan endotransglycosylase/hydrolas 0.901 0.895 0.807 1e-143
449450129333 PREDICTED: probable xyloglucan endotrans 0.937 0.939 0.770 1e-143
187373000336 xyloglucan endotransglucosylase/hydrolas 0.898 0.892 0.802 1e-143
118482018336 unknown [Populus trichocarpa] 0.964 0.958 0.807 1e-143
358349467332 Xyloglucan endotransglycosylase/hydrolas 0.898 0.903 0.795 1e-142
>gi|255573236|ref|XP_002527547.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] gi|223533097|gb|EEF34856.1| Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/337 (78%), Positives = 291/337 (86%), Gaps = 8/337 (2%)

Query: 1   MVVSY-EGCFLLV----FSLLAVVASG-LYRNLPIVPFDEGYSHLFGHDNLVVHTDGKSV 54
           MVVSY   C  L+    F LLAV  SG     LPI+PFDEGY+HLFG DNLV+H DGK+V
Sbjct: 1   MVVSYLNSCLFLLNSSLFVLLAVSVSGSQTTTLPIIPFDEGYAHLFGDDNLVIHKDGKTV 60

Query: 55  HLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEF 114
           +L L+ERTGSGFVS DLYLHG+FSASIKLPADYTAGVVVAFYMSNGD+FEKNHDEIDFEF
Sbjct: 61  YLLLNERTGSGFVSQDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDIFEKNHDEIDFEF 120

Query: 115 LGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPI 174
           LGNIRGKDWRIQTNIYGNGSTSIGREERY+LWFDPSDDFHQYSILWTDSQIIFY+D +PI
Sbjct: 121 LGNIRGKDWRIQTNIYGNGSTSIGREERYSLWFDPSDDFHQYSILWTDSQIIFYVDNVPI 180

Query: 175 REFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF 234
           RE KRT SMGGDFP+KPMSLYATIWDGSDWATNGGKYRVNY+YAPYVT+FSDFVLHGC+ 
Sbjct: 181 REVKRTVSMGGDFPSKPMSLYATIWDGSDWATNGGKYRVNYRYAPYVTQFSDFVLHGCAV 240

Query: 235 DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFECVI 294
           DPIEQ  SKCD  +SS+ +IPTGV+P Q+IKMENFR K+MTYSYCYD++RYK PP EC++
Sbjct: 241 DPIEQI-SKCDAAQSSQ-AIPTGVTPLQKIKMENFRTKYMTYSYCYDRVRYKNPPSECLV 298

Query: 295 NPLEAERLKVHDPVTFGGGRRHHGKRHHRSRSSGTKA 331
           NP EA RLK  DPVTFGG RRH GKR  RSRS    A
Sbjct: 299 NPQEAARLKSFDPVTFGGARRHRGKRQRRSRSGHNDA 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356512283|ref|XP_003524850.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Glycine max] Back     alignment and taxonomy information
>gi|449504255|ref|XP_004162296.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224099595|ref|XP_002311545.1| predicted protein [Populus trichocarpa] gi|222851365|gb|EEE88912.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111404|ref|XP_002315842.1| predicted protein [Populus trichocarpa] gi|222864882|gb|EEF02013.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|124109193|gb|ABM91072.1| xyloglucan endotransglycosylase/hydrolase precursor XTH-39 [Populus tremula] Back     alignment and taxonomy information
>gi|449450129|ref|XP_004142816.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187373000|gb|ACD03234.1| xyloglucan endotransglucosylase/hydrolase 10 [Malus x domestica] Back     alignment and taxonomy information
>gi|118482018|gb|ABK92940.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358349467|ref|XP_003638758.1| Xyloglucan endotransglycosylase/hydrolase [Medicago truncatula] gi|355504693|gb|AES85896.1| Xyloglucan endotransglycosylase/hydrolase [Medicago truncatula] gi|388492724|gb|AFK34428.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2006857332 XTH28 "xyloglucan endotransglu 0.853 0.858 0.723 2.9e-119
TAIR|locus:2059728333 EXGT-A3 "endoxyloglucan transf 0.853 0.855 0.727 6.2e-117
TAIR|locus:2031750343 XTH30 "xyloglucan endotransglu 0.829 0.807 0.602 8.1e-92
TAIR|locus:2117189357 XTH29 "xyloglucan endotransglu 0.841 0.787 0.557 1.3e-86
TAIR|locus:2194554310 XTH33 "xyloglucan:xyloglucosyl 0.781 0.841 0.476 7.4e-66
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.769 0.880 0.449 1.3e-59
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.757 0.866 0.446 1.2e-56
TAIR|locus:2086959290 XTH3 "xyloglucan endotransgluc 0.754 0.868 0.414 1.1e-53
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.760 0.866 0.397 1.9e-51
TAIR|locus:2075919293 XTH31 "XYLOGLUCAN ENDOTRANSGLU 0.769 0.877 0.401 1.1e-50
TAIR|locus:2006857 XTH28 "xyloglucan endotransglucosylase/hydrolase 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 207/286 (72%), Positives = 248/286 (86%)

Query:    25 RNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLP 84
             + LP++ FDEGY+ LFG  NL+VH DGKSV L+LDERTGSGFVS+D+YLHGFFS+SIKLP
Sbjct:    24 QKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLP 83

Query:    85 ADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYN 144
             ADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG++WRIQTNIYGNGST +GREERYN
Sbjct:    84 ADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYN 143

Query:   145 LWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDW 204
             LWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTASMGGDFPAKPMSLY+TIWDGS W
Sbjct:   144 LWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKW 203

Query:   205 ATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRI 264
             AT+GGKY VNYKYAPYV++F+D +LHGC+ DP E+  S C       + + + ++ SQR 
Sbjct:   204 ATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPS-CKDEAVQNLRLASEITESQRN 262

Query:   265 KMENFRRKHMTYSYCYDQIRYKVPPFECVINPLEAERLKVHDPVTF 310
             KME FR+KHMTYSYCYD +RYKV   ECV+NP EA+RL+V+DPVTF
Sbjct:   263 KMEIFRQKHMTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTF 308
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0010154 "fruit development" evidence=IMP
GO:0080086 "stamen filament development" evidence=IMP
TAIR|locus:2059728 EXGT-A3 "endoxyloglucan transferase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031750 XTH30 "xyloglucan endotransglucosylase/hydrolase 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117189 XTH29 "xyloglucan endotransglucosylase/hydrolase 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194554 XTH33 "xyloglucan:xyloglucosyl transferase 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086959 XTH3 "xyloglucan endotransglucosylase/hydrolase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075919 XTH31 "XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38909XTH28_ARATH2, ., 4, ., 1, ., 2, 0, 70.67580.97300.9789yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-142
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 5e-72
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 9e-58
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 2e-27
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 1e-24
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 1e-23
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 1e-12
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 1e-11
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 3e-09
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 4e-08
cd02177269 cd02177, GH16_kappa_carrageenase, Kappa-carrageena 8e-06
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  401 bits (1033), Expect = e-142
 Identities = 129/264 (48%), Positives = 172/264 (65%), Gaps = 5/264 (1%)

Query: 30  VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
             FDE +   +G D++ V  DG SV L+LD+ +GSGF S + YL GFFS  IKLP   +A
Sbjct: 4   ASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSA 63

Query: 90  GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
           G V AFY+S+      NHDEIDFEFLGN+ G+ + +QTN++ NG    GRE+R  LWFDP
Sbjct: 64  GTVTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFANGVG--GREQRIYLWFDP 119

Query: 150 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNG 208
           + DFH YSILW   QI+FY+D +PIR FK   ++G  +P+ +PM +YA+IWDGSDWAT G
Sbjct: 120 TADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQG 179

Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 268
           G+ ++++ YAP+V  + DF L GC  DP +  SS     +    S    +S +Q+  ME 
Sbjct: 180 GRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEW 239

Query: 269 FRRKHMTYSYCYDQIRYKVPPFEC 292
            RR +M Y YC D+ RY VPP EC
Sbjct: 240 VRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185686 cd02177, GH16_kappa_carrageenase, Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.96
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.96
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.94
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.94
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.92
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.75
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.64
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.45
smart00560133 LamGL LamG-like jellyroll fold domain. 88.83
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 87.92
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 87.17
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 83.95
KOG1834 952 consensus Calsyntenin [Extracellular structures] 81.95
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.3e-80  Score=585.40  Aligned_cols=264  Identities=33%  Similarity=0.697  Sum_probs=240.5

Q ss_pred             CCCCCcccCCcccccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCC
Q 019909           27 LPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKN  106 (334)
Q Consensus        27 ~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~  106 (334)
                      ....+|+++|..+|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.+   +.
T Consensus        22 ~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~---~~   98 (291)
T PLN03161         22 FVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG---SR   98 (291)
T ss_pred             cccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC---CC
Confidence            467789999999999999999888888999999999999999999999999999999998889999999999863   57


Q ss_pred             CCeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCC
Q 019909          107 HDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD  186 (334)
Q Consensus       107 ~dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~  186 (334)
                      +|||||||||+++++|+++|||+|.+|.  +.+++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+
T Consensus        99 ~dEIDiEfLG~~~g~~~~vqtN~y~~g~--g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~  176 (291)
T PLN03161         99 HDEIDFEFLGNVSGQPYTIHTNIYTQGN--GSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIA  176 (291)
T ss_pred             CCeEEEEecCCCCCCceEEEeceEeCCc--CCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCc
Confidence            9999999999999999999999999887  67898999999999999999999999999999999999999987777788


Q ss_pred             CC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEeeeecCCCCCCCCcccCC---CCCCCCCCCCCCHHH
Q 019909          187 FP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT---ESSKVSIPTGVSPSQ  262 (334)
Q Consensus       187 ~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~---~~~~~~~~~~l~~~q  262 (334)
                      || ++||+|++|||+|++|||+||++||||+++||+|.|++|+|+||.+++... ...|..+   .|+....++.|+++|
T Consensus       177 yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~-~~~c~~~~~~~~~~~~~~~~l~~~~  255 (291)
T PLN03161        177 YPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS-IKQCADPTPSNWWTSPSYSQLTNAQ  255 (291)
T ss_pred             CCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC-ccccCCCCccccccCccccCCCHHH
Confidence            99 579999999999999999999999999999999999999999998764311 2368642   244445688999999


Q ss_pred             HHHHHHHhhcCeEEeccccCCcCCC-CCCCccCCh
Q 019909          263 RIKMENFRRKHMTYSYCYDQIRYKV-PPFECVINP  296 (334)
Q Consensus       263 ~~~~~~vr~~~m~YdYC~D~~R~p~-~p~EC~~~~  296 (334)
                      +++|+|||+||||||||+|++|||+ +||||.+++
T Consensus       256 ~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~  290 (291)
T PLN03161        256 LTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ  290 (291)
T ss_pred             HHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence            9999999999999999999999998 899998764

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>KOG1834 consensus Calsyntenin [Extracellular structures] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 7e-56
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 1e-55
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 1e-54
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 2e-54
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 9e-45
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 2e-12
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 2e-11
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 2e-11
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 2e-11
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 3e-11
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 3e-11
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 1e-10
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-09
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 2e-09
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 1e-08
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 1e-08
1ajo_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 9e-04
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 112/264 (42%), Positives = 162/264 (61%), Gaps = 14/264 (5%)
Query: 32  FDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGV 91
           FD+GY++L+G  +  V  D  S+ + LD  +GSGF S + Y  G+F A+IKL + YTAGV
Sbjct: 19  FDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 92  VVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS---IGREERYNLWFD 148
           + +FY+SN   +   HDEID EFLG I GK + +QTN++  GS     IGRE R +LWFD
Sbjct: 77  ITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFD 136
Query: 149 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNG 208
           P+ D+H Y+I WT S+IIF++D +PIR + R +     FP +PM +Y ++WD S WAT  
Sbjct: 137 PTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPLRPMWVYGSVWDASSWATEN 194
Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 268
           GKY+ +Y+Y P+V ++ DF L  C+     + +S C+    + VS    +S  Q   ME 
Sbjct: 195 GKYKADYRYQPFVGKYEDFKLGSCTV----EAASSCN---PASVSPYGQLSQQQVAAMEW 247
Query: 269 FRRKHMTYSYCYDQIRYKVPPFEC 292
            ++ +M Y+YC D  R      EC
Sbjct: 248 VQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 9e-91
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 1e-90
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 1e-61
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 4e-61
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 9e-60
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 2e-57
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 8e-49
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 3e-48
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 2e-36
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 5e-21
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 7e-16
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 1e-11
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 4e-11
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 6e-11
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 8e-11
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 1e-10
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 1e-10
3rq0_A269 Glycosyl hydrolases family protein 16; structural 2e-10
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 8e-10
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 1e-09
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 2e-09
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 3e-09
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 8e-08
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 8e-07
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 3e-06
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 5e-06
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  271 bits (694), Expect = 9e-91
 Identities = 97/272 (35%), Positives = 141/272 (51%), Gaps = 7/272 (2%)

Query: 25  RNLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLP 84
           R    V F   Y   +  D++     G  + L LD+ TG+GF S   YL G FS  +KL 
Sbjct: 10  RKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLV 69

Query: 85  ADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYN 144
              +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  
Sbjct: 70  PGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKG--DREQRIY 124

Query: 145 LWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK-PMSLYATIWDGSD 203
           LWFDP+ +FH YS+LW    I+F +D +PIR FK    +G  FP   PM +Y+++W+  D
Sbjct: 125 LWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADD 184

Query: 204 WATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQR 263
           WAT GG  + ++  AP++  +  F + GC     E                   +   Q 
Sbjct: 185 WATRGGLEKTDWSKAPFIASYRSFHIDGCEASV-EAKFCATQGARWWDQKEFQDLDAFQY 243

Query: 264 IKMENFRRKHMTYSYCYDQIRYKVPPFECVIN 295
            ++   R+K+  Y+YC D+ RY   P EC  +
Sbjct: 244 RRLSWVRQKYTIYNYCTDRSRYPSMPPECKRD 275
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Length = 346 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.97
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.97
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.97
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.97
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.92
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.91
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.85
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.77
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 96.34
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 81.24
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=2.5e-75  Score=552.10  Aligned_cols=262  Identities=37%  Similarity=0.728  Sum_probs=239.0

Q ss_pred             CCCCCCcccCCcccccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCC
Q 019909           26 NLPIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEK  105 (334)
Q Consensus        26 ~~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~  105 (334)
                      .+.+.+|.++|..+|+++||+++++|..|+|+|++.++++|.||+.|+||+||||||+|+|+++|+||||||++.+   |
T Consensus        11 ~~~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~---p   87 (278)
T 1umz_A           11 KPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---S   87 (278)
T ss_dssp             -CCCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSS---S
T ss_pred             cccCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCC---C
Confidence            4678899999999999999999888888999999999999999999999999999999998779999999999985   7


Q ss_pred             CCCeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCC
Q 019909          106 NHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG  185 (334)
Q Consensus       106 ~~dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~  185 (334)
                      .++|||||++|+++++|+++|+|+|.+|.  +++++++.+++|++++||+|+|+|+|++|+|||||++|+++++.+..|.
T Consensus        88 ~~gEIDmE~lG~~~g~~~tvhtn~~~~g~--~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~  165 (278)
T 1umz_A           88 EHDEIDFEFLGNRTGQPYILQTNVFTGGK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGV  165 (278)
T ss_dssp             SCCEEEEEEECCSTTSCCEEEEEEEBTTB--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTC
T ss_pred             CCCeEEEEEeCCCCCCceEEEEEEecCCC--CCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCc
Confidence            89999999999998889999999999887  5688888999999999999999999999999999999999998776677


Q ss_pred             CCC-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEeeeecCCCCCCCCcccCC--CCCCCCCCCCCCHHH
Q 019909          186 DFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT--ESSKVSIPTGVSPSQ  262 (334)
Q Consensus       186 ~~P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~--~~~~~~~~~~l~~~q  262 (334)
                      .|| ++||+|+||||+||+|++.||++++||+++||+++|+.++|.+|..++.   .+.|...  .|+....+++|++.|
T Consensus       166 ~~Pf~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~---~~~c~~~~~~~~~~~~~~~l~~~~  242 (278)
T 1umz_A          166 KFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVE---AKFCATQGARWWDQKEFQDLDAFQ  242 (278)
T ss_dssp             CCSCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSS---SCCCTTTTCSGGGSGGGSSCCHHH
T ss_pred             cCcCCCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCC---CCccCCCcccccccCccccCCHHH
Confidence            899 9999999999999999999998889999999999999999999997532   2368643  244444567899999


Q ss_pred             HHHHHHHhhcCeEEeccccCCcCCCCCCCccCC
Q 019909          263 RIKMENFRRKHMTYSYCYDQIRYKVPPFECVIN  295 (334)
Q Consensus       263 ~~~~~~vr~~~m~YdYC~D~~R~p~~p~EC~~~  295 (334)
                      +++|+|||+||||||||+|++|||++||||.++
T Consensus       243 ~~~~~~~~~~~~~y~yc~d~~r~~~~~~ec~~~  275 (278)
T 1umz_A          243 YRRLSWVRQKYTIYNYCTDRSRYPSMPPECKRD  275 (278)
T ss_dssp             HHHHHHHHHHTEEEEGGGCTTTCSSCCTHHHHH
T ss_pred             HHHHHHHHHCCeEEecCCCCCcCCCCCcccCCC
Confidence            999999999999999999999999999999743
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 9e-86
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 2e-39
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 7e-21
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 6e-20
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 2e-11
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 4e-08
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 4e-07
d1o4za_295 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 5e-04
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  257 bits (657), Expect = 9e-86
 Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 7/267 (2%)

Query: 30  VPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTA 89
           V F   Y   +  D++     G  + L LD+ TG+GF S   YL G FS  +KL    +A
Sbjct: 4   VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 63

Query: 90  GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 149
           G V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP
Sbjct: 64  GTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKG--DREQRIYLWFDP 118

Query: 150 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG-DFPAKPMSLYATIWDGSDWATNG 208
           + +FH YS+LW    I+F +D +PIR FK    +G      +PM +Y+++W+  DWAT G
Sbjct: 119 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 178

Query: 209 GKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMEN 268
           G  + ++  AP++  +  F + GC     E                   +   Q  ++  
Sbjct: 179 GLEKTDWSKAPFIASYRSFHIDGCEASV-EAKFCATQGARWWDQKEFQDLDAFQYRRLSW 237

Query: 269 FRRKHMTYSYCYDQIRYKVPPFECVIN 295
            R+K+  Y+YC D+ RY   P EC  +
Sbjct: 238 VRQKYTIYNYCTDRSRYPSMPPECKRD 264
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 295 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.96
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.95
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.95
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.94
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 90.43
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 87.4
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 87.25
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 86.76
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 86.23
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 84.05
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 83.78
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 83.14
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=5.1e-77  Score=558.63  Aligned_cols=261  Identities=37%  Similarity=0.724  Sum_probs=240.5

Q ss_pred             CCCCcccCCcccccCCceEEeCCCcEEEEEEecCCCCeeeecceeEEEEEEEEEEeeCCCCCceEEEEEeecCCCCCCCC
Q 019909           28 PIVPFDEGYSHLFGHDNLVVHTDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNH  107 (334)
Q Consensus        28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~~gs~i~Sk~~f~YG~~EariKlp~g~s~Gvv~AFwl~s~d~~~~~~  107 (334)
                      ..++|+++|.++|+++||++.++|..|+|+||+.+|++|+||+.|+||+||||||||+|+++|++++||++++   ++.+
T Consensus         2 ~~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~---~~~~   78 (267)
T d1umza_           2 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQ---NSEH   78 (267)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECS---SSSC
T ss_pred             ccccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCC---CCCC
Confidence            4678999999999999999999999999999999999999999999999999999999988899999999887   4789


Q ss_pred             CeeeEEEcCCcCCCcceEEEeEEcCCCcCCCCceeEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCC
Q 019909          108 DEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDF  187 (334)
Q Consensus       108 dEID~E~lG~~~g~p~~~qTNv~~~G~~~~~~e~~~~l~~dpt~dfHtY~i~Wtpd~I~fyVDG~~vr~~~~~~~~g~~~  187 (334)
                      +|||||++|++.++++++|||+|.+|.  +++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++
T Consensus        79 dEIDiE~lG~~~~~~~~v~tn~~~~g~--g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~  156 (267)
T d1umza_          79 DEIDFEFLGNRTGQPYILQTNVFTGGK--GDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKF  156 (267)
T ss_dssp             CEEEEEEECCSTTSCCEEEEEEEBTTB--CCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCC
T ss_pred             CeEEEEEecccCCcccEEEeeEeCCCC--CCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCC
Confidence            999999999999999999999999988  578889999999999999999999999999999999999999988888888


Q ss_pred             C-CCcceEEEEEeeCCCCCCCCCccccCCCCCCEEEEEcEEEEeeeecCCCCCCCCccc--CCCCCCCCCCCCCCHHHHH
Q 019909          188 P-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCD--ITESSKVSIPTGVSPSQRI  264 (334)
Q Consensus       188 P-~~Pm~l~lniW~GgdWat~GG~~~~d~s~aPf~a~~~~~~v~~c~~~~~~~~~~~C~--~~~~~~~~~~~~l~~~q~~  264 (334)
                      | ++||+|++|||+||+|||+||+.++||+++||+|.|++|+|+||.+++..   ..|.  ...|++...++.|+.+|++
T Consensus       157 p~~~pm~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~  233 (267)
T d1umza_         157 PFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEA---KFCATQGARWWDQKEFQDLDAFQYR  233 (267)
T ss_dssp             SCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSS---CCCTTTTCSGGGSGGGSSCCHHHHH
T ss_pred             CcceEEEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCC---cccCCCCCccccccccccCCHHHHH
Confidence            7 89999999999999999999999999999999999999999999886542   2343  2334555667899999999


Q ss_pred             HHHHHhhcCeEEeccccCCcCCCCCCCccCCh
Q 019909          265 KMENFRRKHMTYSYCYDQIRYKVPPFECVINP  296 (334)
Q Consensus       265 ~~~~vr~~~m~YdYC~D~~R~p~~p~EC~~~~  296 (334)
                      +|+|||+||||||||+|++|||++||||.+++
T Consensus       234 ~~~~~~~~~~~y~yC~d~~r~~~~p~EC~~~~  265 (267)
T d1umza_         234 RLSWVRQKYTIYNYCTDRSRYPSMPPECKRDR  265 (267)
T ss_dssp             HHHHHHHHTEEEEGGGCTTTCSSCCTHHHHHT
T ss_pred             HHHHHHHCCcEEccCCCCCcCCCCCcccCCCC
Confidence            99999999999999999999999999998764
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure