Citrus Sinensis ID: 019911

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MEVKGRACRSKGNSKSSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQANKASAAPAATATPIATTGATSGSFTTAPIDEPASRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQVSSVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFEANNQMMDGGDASDNLWNMNVDELWSLQQQFNTNM
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHccccccc
cccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccHHHcccccHHccccccHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccc
mevkgracrskgnsksssttiseedldlrrgpwtveedFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLnylrpdvrrgniTLEEQLMILELHSRWGNRWSKIaqhlpgrtdneiKNYWRTRVQKHAKQlkcdvnskqfkdTMRYLWMPRLIERIQAnkasaapaatatpiattgatsgsfttapidepasrffnnidvgteqmvmqplncssqvttsqittchytpensstgassdsfgtqvssvsdlaeyyaipvnnntnpdyfqshvgfaesslisptgyfnpgidfQSAFEAnnqmmdggdasdnlwNMNVDELWSLQQQFNTNM
mevkgracrskgnsksssttiseedldlrrgpwTVEEDFKLINYISNHGEGRWNCLARCAGLkrtgkscrlrwlnylrpdvrrgnitLEEQLMILELHSRWGNRWSKiaqhlpgrtdnEIKNYWRTRVQKhakqlkcdvnskqfkDTMRYLWMPRLIERIQANKASAAPAATATPIATTGATSGSFTTAPIDEPASRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQVSSVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFEANNQMMDGGDASDNLWNMNVDELWSLqqqfntnm
MEVKGRACRSKGNSKSSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQANKasaapaatatpiattgatsgsfttaPIDEPASRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQVSSVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFEANNQMMDGGDASDNLWNMNVDELWSLQQQFNTNM
****************************RRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQA*********************************SRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHY*********************SDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFE*************NLWNMNVDELWSL********
*****************************RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK***********************************************************************************************************************SVSDLAEYYAIPVNNNT******************************SAFEANNQMMDGGDASDNLWNMNVDELWSL*Q******
*************************LDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQAN*********ATPIATTGATSGSFTTAPIDEPASRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTP*****************SVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFEANNQMMDGGDASDNLWNMNVDELWSLQQQFNTNM
*******************TISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDT***************************************************************************************************************************************************FQS****NN********S*****MNVDELWSLQQQF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVKGRACRSKGNSKSSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLIERIQANKASAAPAATATPIATTGATSGSFTTAPIDEPASRFFNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQVSSVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGIDFQSAFEANNQMMDGGDASDNLWNMNVDELWSLQQQFNTNM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
P81391205 Myb-related protein 305 O N/A no 0.332 0.541 0.801 8e-52
P81396198 Myb-related protein 340 O N/A no 0.332 0.560 0.803 3e-51
Q9LK95226 Transcription factor MYB2 no no 0.329 0.486 0.781 4e-51
Q9LX82256 Transcription factor MYB4 no no 0.335 0.437 0.580 1e-36
Q4JL84235 Transcription factor MYB5 no no 0.329 0.468 0.581 1e-36
Q4JL76242 Myb-related protein MYBAS no no 0.344 0.475 0.567 1e-35
P81394268 Myb-related protein 315 O N/A no 0.359 0.447 0.566 1e-35
P80073 421 Myb-related protein Pp2 O N/A no 0.353 0.280 0.567 2e-35
A2WW87 553 Transcription factor GAMY N/A no 0.308 0.186 0.563 2e-35
Q0JIC2 553 Transcription factor GAMY no no 0.308 0.186 0.563 2e-35
>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1 Back     alignment and function desciption
 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 103/111 (92%)

Query: 24  EDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRR 83
           +D+++R+GPWT+EED  LINYI+NHGEG WN LAR AGLKRTGKSCRLRWLNYLRPDVRR
Sbjct: 9   QDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRR 68

Query: 84  GNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQ 134
           GNIT EEQL+I+ELH++WGNRWSKIA+ LPGRTDNEIKNYWRTR+QKH +Q
Sbjct: 69  GNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ 119
Transcription factor.
Antirrhinum majus (taxid: 4151)
>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1 Back     alignment and function description
>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2 Back     alignment and function description
>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1 Back     alignment and function description
>sp|P81394|MYB15_ANTMA Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1 Back     alignment and function description
>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1 Back     alignment and function description
>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1 Back     alignment and function description
>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
224099087321 predicted protein [Populus trichocarpa] 0.871 0.906 0.681 1e-112
224112034316 predicted protein [Populus trichocarpa] 0.877 0.927 0.672 1e-111
147773545306 hypothetical protein VITISV_029107 [Viti 0.895 0.977 0.634 1e-102
228480908306 R2R3 transcription factor MYB108-like pr 0.895 0.977 0.634 1e-102
225432059306 PREDICTED: uncharacterized protein LOC10 0.895 0.977 0.634 1e-102
327412615343 putative MYB transcription factor [Rosa 0.916 0.892 0.585 1e-92
358248638325 uncharacterized protein LOC100791349 [Gl 0.940 0.966 0.593 3e-85
356565345322 PREDICTED: transcription factor MYB39 [G 0.931 0.965 0.568 1e-83
356529079340 PREDICTED: uncharacterized protein LOC10 0.955 0.938 0.549 3e-78
356555971341 PREDICTED: transcription repressor MYB6 0.958 0.938 0.549 8e-77
>gi|224099087|ref|XP_002311369.1| predicted protein [Populus trichocarpa] gi|222851189|gb|EEE88736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/308 (68%), Positives = 237/308 (76%), Gaps = 17/308 (5%)

Query: 27  DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNI 86
           DLRRGPWTVEEDFKLINYI+ HGEGRWN LARCAGLKRTGKSCRLRWLNYLRPDVRRGNI
Sbjct: 26  DLRRGPWTVEEDFKLINYIATHGEGRWNSLARCAGLKRTGKSCRLRWLNYLRPDVRRGNI 85

Query: 87  TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKD 146
           TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKD
Sbjct: 86  TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKD 145

Query: 147 TMRYLWMPRLIERIQANKASAAPAATATPIATTGATSGSFTTAPIDEPASRFFNNIDVGT 206
           TMRYLWMPRL+ERIQA  A+A   ++ +    +   +   + +           N DVGT
Sbjct: 146 TMRYLWMPRLVERIQAAAATATNTSSTSTATVSAPATNQHSIS-----------NRDVGT 194

Query: 207 EQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQVSSVSDL-AEYYAIPVNNN 265
             +VM P   +         T  YTPENSST ASSDSF TQVS VSDL  +YY IPVN N
Sbjct: 195 GNLVMAPHGINGNDFGVSHVTQSYTPENSSTAASSDSFATQVSPVSDLTTDYYNIPVNRN 254

Query: 266 TNPDYFQS-HVGFAESSLISPTGYFNPGIDFQSAFEANNQM-MDGGDASDNLWNMNVDEL 323
           TNPDYFQ+  VG++E S+ISP G+FN G+DFQ+   ++NQ  MD GD SDN+WN+  +++
Sbjct: 255 TNPDYFQAGQVGYSE-SMISPPGFFNHGLDFQAMEHSSNQWPMDSGDTSDNMWNL--EDI 311

Query: 324 WSLQQQFN 331
           W LQQQ N
Sbjct: 312 WFLQQQLN 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112034|ref|XP_002316060.1| predicted protein [Populus trichocarpa] gi|222865100|gb|EEF02231.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147773545|emb|CAN63179.1| hypothetical protein VITISV_029107 [Vitis vinifera] Back     alignment and taxonomy information
>gi|228480908|gb|ACQ42220.1| R2R3 transcription factor MYB108-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432059|ref|XP_002280500.1| PREDICTED: uncharacterized protein LOC100248153 [Vitis vinifera] gi|296083206|emb|CBI22842.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|327412615|emb|CCA29096.1| putative MYB transcription factor [Rosa rugosa] Back     alignment and taxonomy information
>gi|358248638|ref|NP_001239915.1| uncharacterized protein LOC100791349 [Glycine max] gi|255635429|gb|ACU18067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356565345|ref|XP_003550902.1| PREDICTED: transcription factor MYB39 [Glycine max] Back     alignment and taxonomy information
>gi|356529079|ref|XP_003533124.1| PREDICTED: uncharacterized protein LOC100805341 [Glycine max] Back     alignment and taxonomy information
>gi|356555971|ref|XP_003546301.1| PREDICTED: transcription repressor MYB6 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2084269323 MYB108 "myb domain protein 108 0.907 0.938 0.501 1.1e-76
TAIR|locus:2202633243 MYB112 "myb domain protein 112 0.470 0.646 0.746 9.8e-70
TAIR|locus:2065226273 MYB2 "AT2G47190" [Arabidopsis 0.440 0.538 0.755 9e-61
TAIR|locus:2199357286 MYB62 "myb domain protein 62" 0.452 0.527 0.690 2.3e-60
TAIR|locus:2089159226 MYB21 "myb domain protein 21" 0.371 0.548 0.725 1.3e-53
TAIR|locus:2032975283 MYB116 "myb domain protein 116 0.425 0.501 0.669 6.3e-53
TAIR|locus:2084168206 MYB57 "myb domain protein 57" 0.374 0.606 0.696 3.7e-48
TAIR|locus:2170573214 MYB24 "myb domain protein 24" 0.350 0.546 0.743 1.6e-47
TAIR|locus:2089812276 MYB121 "myb domain protein 121 0.314 0.380 0.666 4.1e-43
TAIR|locus:2140847261 MYB79 "myb domain protein 79" 0.314 0.402 0.695 2.2e-42
TAIR|locus:2084269 MYB108 "myb domain protein 108" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 169/337 (50%), Positives = 212/337 (62%)

Query:    11 KGNSKSSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCR 70
             KG S  ++    E+++DL+RGPWT EEDFKL+NYI+ +GEGRWN L+RCAGL+RTGKSCR
Sbjct:     4 KGRSLKNNNM--EDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCR 61

Query:    71 LRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
             LRWLNYLRPDVRRGNITLEEQL+ILELHSRWGNRWSKIAQ+LPGRTDNEIKNYWRTRVQK
Sbjct:    62 LRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 121

Query:   131 HAKQLKCDVNSKQFKDTMRYLWMPRLIERIQANKXXXXXXXXXXXXXXXXXXXXXXXXXP 190
             HAKQLKCDVNS+QFKDTM+YLWMPRL+ERIQ+                            
Sbjct:   122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSSCITT 181

Query:   191 IDEPASRF-FNNIDVGTEQMVMQPLNCSSQVTTSQITTCHYTPENSSTGASSDSFGTQV- 248
              +     + +NN ++G +  VM                 + TPENSS   S  S  T+  
Sbjct:   182 SNNQFMNYDYNNNNMGQQFGVMS-------------NNDYITPENSSVAVSPASDLTEYY 228

Query:   249 SSVSDLAEYYAIPVNNNTNPDYFQSHVGFAESSLISPTGYFNPGI---DFQSAFEANN-- 303
             S+ +   EYY+  + N+  PD  Q+ V    S L+    +   G+   D  +  E +N  
Sbjct:   229 SAPNPNPEYYSGQMGNSYYPD--QNLVS---SQLLPDNYFDYSGLLDEDLTAMQEQSNLS 283

Query:   304 --QMMDGG-DASDNLWNMNV--DELWSLQQQ--FNTN 333
               + ++G   +SD+LWN+    +E W LQQQ  FN N
Sbjct:   284 WFENINGAASSSDSLWNIGETDEEFWFLQQQQQFNNN 320
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0009620 "response to fungus" evidence=IMP
GO:0009651 "response to salt stress" evidence=IEP
GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
GO:0052542 "defense response by callose deposition" evidence=RCA
TAIR|locus:2202633 MYB112 "myb domain protein 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065226 MYB2 "AT2G47190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199357 MYB62 "myb domain protein 62" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089159 MYB21 "myb domain protein 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084168 MYB57 "myb domain protein 57" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170573 MYB24 "myb domain protein 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089812 MYB121 "myb domain protein 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140847 MYB79 "myb domain protein 79" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 2e-42
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 7e-40
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-14
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-11
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 7e-11
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 2e-10
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 2e-10
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 2e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 4e-10
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 9e-05
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information 
 Score =  147 bits (372), Expect = 2e-42
 Identities = 68/115 (59%), Positives = 83/115 (72%)

Query: 16  SSSTTISEEDLDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLN 75
           S  TT     + ++RGPWTVEED  L+++I   GEGRW  L + AGL R GKSCRLRW+N
Sbjct: 11  SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMN 70

Query: 76  YLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
           YLRP V+RG IT +E+ +IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K
Sbjct: 71  YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRK 125

Length = 249
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
KOG0048238 consensus Transcription factor, Myb superfamily [T 100.0
PLN03212249 Transcription repressor MYB5; Provisional 100.0
PLN03091 459 hypothetical protein; Provisional 99.98
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.77
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.74
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.68
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.67
PLN03212249 Transcription repressor MYB5; Provisional 99.6
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.54
PLN03091 459 hypothetical protein; Provisional 99.5
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.49
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.44
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.44
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.4
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.35
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.19
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.1
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.05
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.97
KOG0051607 consensus RNA polymerase I termination factor, Myb 98.89
COG5147 512 REB1 Myb superfamily proteins, including transcrip 98.23
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.98
KOG0457438 consensus Histone acetyltransferase complex SAGA/A 97.87
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.74
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.68
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.63
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.47
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.38
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 97.29
KOG1279506 consensus Chromatin remodeling factor subunit and 97.15
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.02
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 96.77
KOG1279506 consensus Chromatin remodeling factor subunit and 96.75
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.71
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.63
PRK13923170 putative spore coat protein regulator protein YlbO 96.57
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.48
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 96.27
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 96.23
PLN031421033 Probable chromatin-remodeling complex ATPase chain 95.97
COG5114432 Histone acetyltransferase complex SAGA/ADA, subuni 95.75
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.67
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.6
PRK13923170 putative spore coat protein regulator protein YlbO 94.98
KOG4282345 consensus Transcription factor GT-2 and related pr 93.24
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 92.41
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 91.26
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 90.78
KOG2656445 consensus DNA methyltransferase 1-associated prote 90.28
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 88.43
KOG4167907 consensus Predicted DNA-binding protein, contains 88.22
KOG1194534 consensus Predicted DNA-binding protein, contains 87.02
KOG4282345 consensus Transcription factor GT-2 and related pr 85.63
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 83.62
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 83.27
PF1162687 Rap1_C: TRF2-interacting telomeric protein/Rap1 - 81.44
PF1340442 HTH_AsnC-type: AsnC-type helix-turn-helix domain; 80.33
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 80.3
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=8e-34  Score=264.66  Aligned_cols=111  Identities=52%  Similarity=0.940  Sum_probs=106.7

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 019911           26 LDLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRW  105 (334)
Q Consensus        26 p~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W  105 (334)
                      +.+.||+||+|||++|+++|++||.++|..||+.+|++|++|+||+||.|||+|+++||.||+|||++|++++..+|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            44668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhCCCCCHHHHHHHHHHhhhHHhhhcc
Q 019911          106 SKIAQHLPGRTDNEIKNYWRTRVQKHAKQLK  136 (334)
Q Consensus       106 ~~IAk~lpgRT~~qcrnRW~~~lr~~~kk~~  136 (334)
                      +.||++|||||+++|||+|+..+++++.+..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999998887765

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres [] Back     alignment and domain information
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 6e-22
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 1e-21
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 2e-21
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 2e-21
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 2e-21
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 2e-12
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 7e-11
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 5e-10
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 2e-07
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 2e-07
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 6e-07
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 1e-06
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 1e-06
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 27  DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLK-RTGKSCRLRWLNYLRPDVRRGN 85
           DL +GPWT EED K+I  +  +G  +W  +A+   LK R GK CR RW N+L P+V++ +
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAK--HLKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 86  ITLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
            T EE  +I E H   GNRW++IA+ LPGRTDN +KN+W + +++
Sbjct: 62  WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 2e-57
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 1e-56
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 3e-56
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 8e-54
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 6e-50
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-49
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-29
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-07
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 1e-24
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 4e-22
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 8e-20
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 1e-15
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 6e-15
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 3e-13
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 1e-12
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 5e-12
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 8e-10
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 8e-04
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-09
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 5e-04
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 5e-08
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 7e-04
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-07
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 1e-07
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-07
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 2e-04
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 4e-07
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 9e-07
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 7e-06
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 8e-06
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 9e-05
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 3e-05
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 6e-05
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 7e-05
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 1e-04
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 6e-04
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
 Score =  180 bits (458), Expect = 2e-57
 Identities = 47/104 (45%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 27  DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNI 86
           +L +GPWT EED ++I  +  +G  RW+ +A+     R GK CR RW N+L P+V++ + 
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 87  TLEEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 130
           T EE  +I + H R GNRW++IA+ LPGRTDN IKN+W + +++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 100.0
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 100.0
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 100.0
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 100.0
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.98
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.86
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.85
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.76
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.74
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.71
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.71
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.71
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.7
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.69
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.69
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.68
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.67
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.67
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.66
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.63
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.63
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.62
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.62
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.61
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.59
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.59
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.59
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.58
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.57
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.56
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.56
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.56
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.55
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.52
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.51
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.5
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.48
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.48
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.21
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.46
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.44
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.42
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.42
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.4
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.38
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.37
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.03
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.34
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.3
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.29
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.29
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.25
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.23
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.18
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.09
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.96
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 98.88
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.86
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.82
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.78
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.76
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.75
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.6
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.58
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.46
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.44
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.41
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.38
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.13
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.1
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.09
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 98.07
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.16
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.88
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.8
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.77
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.65
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.59
2crg_A70 Metastasis associated protein MTA3; transcription 97.59
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.52
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.31
2crg_A70 Metastasis associated protein MTA3; transcription 97.31
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 97.26
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.25
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.2
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 97.04
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 96.86
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.77
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.92
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.54
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 92.23
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 91.77
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 90.92
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 90.68
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 85.62
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=100.00  E-value=8.3e-34  Score=231.51  Aligned_cols=104  Identities=45%  Similarity=0.889  Sum_probs=99.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 019911           27 DLRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWS  106 (334)
Q Consensus        27 ~lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~lkrg~WT~EED~~Ll~lv~~~G~~W~  106 (334)
                      +++||+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999888999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHhhhHH
Q 019911          107 KIAQHLPGRTDNEIKNYWRTRVQKH  131 (334)
Q Consensus       107 ~IAk~lpgRT~~qcrnRW~~~lr~~  131 (334)
                      .||++|||||+++||+||+.++++.
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998875
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-20
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-08
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-19
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 9e-19
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 8e-08
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-15
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-05
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 8e-15
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-05
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 5e-14
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-09
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-12
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-09
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 5e-12
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 6e-11
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 7e-12
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 4e-08
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 6e-11
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 1e-10
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 4e-07
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 1e-10
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 6e-04
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-08
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 3e-05
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (197), Expect = 7e-20
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD 80
          L +GPWT EED +LI  +  +G  RW+ +A+     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.74
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.74
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.69
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.67
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.67
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.61
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.59
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.57
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.56
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.51
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.5
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.5
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.5
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.48
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.42
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.41
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.4
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.36
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.33
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.29
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.27
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.27
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.23
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.09
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.09
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.01
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.95
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.86
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.21
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.11
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.88
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.82
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.16
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.12
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.89
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 96.8
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 96.55
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.36
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 94.79
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 94.49
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 91.0
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 88.09
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 84.58
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 82.29
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.1e-19  Score=125.75  Aligned_cols=52  Identities=46%  Similarity=0.928  Sum_probs=50.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCChHHHHhhhCCccChhhhhhhhhcccCCC
Q 019911           28 LRRGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYLRPD   80 (334)
Q Consensus        28 lkKg~WT~EEDe~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qCr~Rw~~~L~p~   80 (334)
                      |+||+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999999889999999998 999999999999999984
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure