Citrus Sinensis ID: 019916

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcc
cccccEEEEccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHc
mkdmsipllaavsssteetvrpiadfhptlwgthflksaadvetiDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDElgkvshdldrddlyVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISisdhshvnsklpEQIRRSLQIPLRKAAARLEARYFLdiysrddlhdeTLLKFAKLDFNILQAAHQKEASIMTRWwndlgfpkkvpyaRDRIVETYIWMLLGvsydpnlafgRIFASKVMCMLTIIDdtfdaygtfeqLTHFTEAVTRL
MKDMSIPLLAAVsssteetvRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDelgkvshdldrDDLYVVSLRFRlfrqqgvkiscDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCdvfekfkddegkfkeSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
*******************VRPIADFHPTLWGTHFLKSAADVETIDDA*****AALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHV*******IRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTE*****
*************************FHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVR*******NKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
******P***********TVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
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SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q94JS8 560 (E)-beta-farnesene syntha N/A no 0.997 0.594 0.930 0.0
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.949 0.569 0.5 1e-90
O49853 554 (+)-delta-cadinene syntha N/A no 0.934 0.563 0.481 9e-89
Q39761 554 (+)-delta-cadinene syntha N/A no 0.934 0.563 0.478 8e-88
Q39760 554 (+)-delta-cadinene syntha N/A no 0.934 0.563 0.475 1e-87
P93665 554 (+)-delta-cadinene syntha N/A no 0.934 0.563 0.475 6e-87
J9RLZ7 563 Germacrene C/D synthase O N/A no 0.976 0.579 0.458 2e-86
J9R5V4 562 Valerena-4,7(11)-diene sy N/A no 0.943 0.560 0.469 2e-85
Q9FQ27 544 (E,E)-germacrene B syntha N/A no 0.946 0.580 0.470 8e-85
Q43714 555 (+)-delta-cadinene syntha N/A no 0.973 0.585 0.456 2e-83
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/333 (93%), Positives = 321/333 (96%)

Query: 1   MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEV 60
           MKDMSIPLLAAVSSSTEETVRPIADFHPTLWG HFLKSAADVETID ATQEQHAALKQEV
Sbjct: 1   MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEV 60

Query: 61  RRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLF 120
           RRMITTTANKLA KLHMID+VQRLGVAYHFEKEIEDELGKVSHDLD DDLYVVSLRFRLF
Sbjct: 61  RRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDLDSDDLYVVSLRFRLF 120

Query: 121 RQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSH 180
           RQQGVKISCDVF+KFKDDEGKFKESLINDIRGM SL+EAAYLA+RGEDILDEAI FTT+H
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 181 LKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240
           LKS+ISISDHSH NS L EQIR SLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIF 300
           LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRI+ETYIWMLLGVSY+PNLAFGRIF
Sbjct: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIF 300

Query: 301 ASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
           ASKV+CM+T IDDTFDAYGTFE+LT FTEAVTR
Sbjct: 301 ASKVVCMITTIDDTFDAYGTFEELTLFTEAVTR 333
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|J9RLZ7|TPS1_VALOF Germacrene C/D synthase OS=Valeriana officinalis GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|J9R5V4|TPS2_VALOF Valerena-4,7(11)-diene synthase OS=Valeriana officinalis GN=TPS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
75250254 560 RecName: Full=(E)-beta-farnesene synthas 0.997 0.594 0.930 0.0
300079902 560 (E)-beta-farnesene synthase [Citrus reti 0.997 0.594 0.924 0.0
313585892 551 Tps2-1 [Clausena lansium] 0.940 0.569 0.666 1e-123
261343328 548 terpene synthase 1 [Citrus sinensis] 0.943 0.574 0.609 1e-106
19880625 548 putative terpene synthase [Citrus x para 0.943 0.574 0.609 1e-106
9864189 555 terpene synthase [Citrus junos] 0.976 0.587 0.586 1e-106
33316389 548 valencene synthase [Citrus sinensis] 0.943 0.574 0.606 1e-105
255563621 558 (+)-delta-cadinene synthase isozyme A, p 0.967 0.578 0.495 9e-94
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.958 0.574 0.498 2e-89
147856860 557 hypothetical protein VITISV_030783 [Viti 0.958 0.574 0.498 3e-89
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/333 (93%), Positives = 321/333 (96%)

Query: 1   MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEV 60
           MKDMSIPLLAAVSSSTEETVRPIADFHPTLWG HFLKSAADVETID ATQEQHAALKQEV
Sbjct: 1   MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEV 60

Query: 61  RRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDRDDLYVVSLRFRLF 120
           RRMITTTANKLA KLHMID+VQRLGVAYHFEKEIEDELGKVSHDLD DDLYVVSLRFRLF
Sbjct: 61  RRMITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDLDSDDLYVVSLRFRLF 120

Query: 121 RQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSH 180
           RQQGVKISCDVF+KFKDDEGKFKESLINDIRGM SL+EAAYLA+RGEDILDEAI FTT+H
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 181 LKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240
           LKS+ISISDHSH NS L EQIR SLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIF 300
           LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRI+ETYIWMLLGVSY+PNLAFGRIF
Sbjct: 241 LDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIF 300

Query: 301 ASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
           ASKV+CM+T IDDTFDAYGTFE+LT FTEAVTR
Sbjct: 301 ASKVVCMITTIDDTFDAYGTFEELTLFTEAVTR 333

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.973 0.581 0.422 1.9e-67
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.973 0.569 0.409 5.1e-67
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.937 0.563 0.424 6.7e-65
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.967 0.581 0.390 7.6e-64
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.973 0.576 0.413 1.6e-63
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.973 0.575 0.392 1.2e-60
UNIPROTKB|Q49SP5 554 Q49SP5 "Germacrene A synthase" 0.928 0.559 0.406 6.4e-60
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.922 0.56 0.386 1.3e-59
UNIPROTKB|D0VMR8 547 C4 "Delta-guaiene synthase 3" 0.943 0.575 0.392 1.9e-58
UNIPROTKB|D0VMR6 547 C2 "Delta-guaiene synthase 1" 0.943 0.575 0.389 8.4e-58
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 144/341 (42%), Positives = 206/341 (60%)

Query:     1 MKDMSIPLLAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEV 60
             M++  +P+ +    + +E  RPIA+F P++WG  F+  A + E      + Q   LK++V
Sbjct:     1 MENQKVPISSV--PNLKELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQV 58

Query:    61 RRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVS-HDLDRD-------DLYV 112
             RR +  T +K   +L++ID+ QRLG+AYHFE EIE+ L  +  H    +       DLY 
Sbjct:    59 RRELAATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYS 118

Query:   113 VSLRFRLFRQQGVKISCXXXXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDE 172
             V+L FRL RQ G K+SC               SL+ D +G+  L+EA +L+V GE++LD+
Sbjct:   119 VALWFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDD 178

Query:   173 AIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHD 232
             A+ F  + L+SI++     H+N  L EQ+R +L  PLRK   RLEA YF  IY   D H+
Sbjct:   179 ALEFAKTRLESIVN-----HLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHN 233

Query:   233 ETLLKFAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDP 292
             + LLK AKLDFN+LQ+ H+KE S M RWW  L F  K P+ARDR+VE Y W+L GV ++P
Sbjct:   234 KALLKLAKLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVL-GVYFEP 292

Query:   293 NLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
               +  R    KV  M++ IDD +DAYGT ++L  FT+A+ R
Sbjct:   293 QYSLARKIIIKVFTMISTIDDIYDAYGTLDELELFTKAMQR 333
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR6 C2 "Delta-guaiene synthase 1" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.93090.99700.5946N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-145
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 2e-78
pfam03936 270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-35
cd00868 284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-26
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-22
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-17
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  420 bits (1081), Expect = e-145
 Identities = 148/321 (46%), Positives = 213/321 (66%), Gaps = 11/321 (3%)

Query: 21  RPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTT--ANKLAHKLHMI 78
           RP A+F P+LWG     S +   + +D  +E+   LK+EVR+M+  +     L  +L +I
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 79  DSVQRLGVAYHFEKEIEDELGKVSHDLDR------DDLYVVSLRFRLFRQQGVKISCDVF 132
           D +QRLG++YHFE EI++ L  +            DDLY  +L FRL RQ G  +S DVF
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVF 120

Query: 133 EKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSH 192
           +KFKD++GKFKESL  D++GM SL+EA++L+  GEDILDEA++FTT HL+  +    +  
Sbjct: 121 KKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLE--SNWI 178

Query: 193 VNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQK 252
           ++  L  +I  +L+IPL  +  RLEAR++++ Y ++D H+ETLL+ AKLDFNILQA HQ+
Sbjct: 179 IDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238

Query: 253 EASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIID 312
           E  I++RWW DL    K+P+ARDR+VE Y W   G  ++P  +  RI  +K + ++T+ID
Sbjct: 239 ELKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLARIALAKTIALITVID 297

Query: 313 DTFDAYGTFEQLTHFTEAVTR 333
           DT+D YGT E+L  FTEAV R
Sbjct: 298 DTYDVYGTLEELELFTEAVER 318

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936 270 Terpene_synth_C: Terpene synthase family, metal bi 99.75
cd00868 284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 99.5
cd00687 303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 97.63
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=2.8e-107  Score=835.08  Aligned_cols=310  Identities=49%  Similarity=0.881  Sum_probs=292.8

Q ss_pred             CCCCCCCCCCccc-cccccCCchhhcchHHHHHHHHHHHHHHHHHhhc--hhcccchhhHhHHHHHhCcccccHHHHHHH
Q 019916           21 RPIADFHPTLWGT-HFLKSAADVETIDDATQEQHAALKQEVRRMITTT--ANKLAHKLHMIDSVQRLGVAYHFEKEIEDE   97 (334)
Q Consensus        21 r~~a~~~psiW~d-~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~--~~~~~~~L~lID~LqRLGI~~hFe~EI~~~   97 (334)
                      ||++||+||+||| +|+++++++.. ...+.+++++||++||+||...  +.|++++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 77776554432 2378999999999999999864  679999999999999999999999999999


Q ss_pred             HHHhhh-cC-----CCCChhhhhHHHHhhhhcCceeecccccceecccCccchhhhhhHHHHHhHHhhhccCCCCchHHH
Q 019916           98 LGKVSH-DL-----DRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILD  171 (334)
Q Consensus        98 L~~i~~-~~-----~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iLd  171 (334)
                      |++||+ |.     ...||++|||+|||||||||+||||||++|+|++|+|++++.+|++||||||||||+++|||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            999998 42     247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCCChHHHHHHhcCCCccccchhhHHHHhHHhhcCCCCCcHHHHHHHHHhhHHHHHhhH
Q 019916          172 EAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQ  251 (334)
Q Consensus       172 eA~~Ft~~~L~~~~~~~~~~~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~~Y~~~~~~n~~lLelAKlDFn~~Q~~hq  251 (334)
                      ||++||++||++.++++  +.++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||
T Consensus       160 eA~~ft~~~L~~~~~~~--~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq  237 (542)
T cd00684         160 EALSFTTKHLEEKLESN--WIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ  237 (542)
T ss_pred             HHHHHHHHHHHHHhhcc--CCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence            99999999999999731  2378899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHHHHH
Q 019916          252 KEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAV  331 (334)
Q Consensus       252 ~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft~av  331 (334)
                      +||++++|||+++||.++|||||||++|||||++ |++|||++|.+|+++||++++++++||+||+|||+|||+.||+||
T Consensus       238 ~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~-a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai  316 (542)
T cd00684         238 EELKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAV  316 (542)
T ss_pred             HHHHHHhHHHHhcCCcccCCcccchhHHHHHHHH-hcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHH
Confidence            9999999999999999899999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             hcC
Q 019916          332 TRL  334 (334)
Q Consensus       332 ~RW  334 (334)
                      +||
T Consensus       317 ~rw  319 (542)
T cd00684         317 ERW  319 (542)
T ss_pred             Hhc
Confidence            999

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-80
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-71
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 2e-71
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-71
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-71
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 7e-71
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 9e-71
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 4e-70
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 4e-70
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 3e-68
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-51
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 1e-44
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 6e-44
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-41
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-34
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-26
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 3e-24
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 6e-16
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  295 bits (754), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 144/322 (44%), Positives = 208/322 (64%), Gaps = 10/322 (3%)
Query: 14  SSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAH 73
           SS ++ +RP ADF P++WG  FL      + ID  T+++H  LK+EVR+MI         
Sbjct: 15  SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQ 72
Query: 74  KLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLD--RDDLYVVSLRFRLFRQQGVKISCXX 131
           KL  IDSVQRLGV+YHF KEIEDEL  + H+ +   +DLY  S+RFRL R+ G  +SC  
Sbjct: 73  KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDV 132
Query: 132 XXXXXXXXXXXXXSLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHS 191
                        S+ +D+RG+  L++A+YL V GEDILDEAI+FTT HL   ++  DH 
Sbjct: 133 FNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHP 192
Query: 192 HVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAKLDFNILQAAHQ 251
                L E++  +L+  +R+   R+EAR++L +Y   + H++ LL+FAK+DFN+LQ  H+
Sbjct: 193 -----LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR 247
Query: 252 KEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTII 311
           KE S + RWW DL F +K+PYARDR+VE Y W + GV ++P  + GR   +KV+ M +I+
Sbjct: 248 KELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTKVIAMASIV 306
Query: 312 DDTFDAYGTFEQLTHFTEAVTR 333
           DDT+D+Y T+E+L  +T A+ R
Sbjct: 307 DDTYDSYATYEELIPYTNAIER 328
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-102
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 1e-100
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-99
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 2e-97
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 5e-96
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 1e-92
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 2e-70
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 3e-70
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 3e-70
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-68
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  310 bits (794), Expect = e-102
 Identities = 155/336 (46%), Positives = 224/336 (66%), Gaps = 14/336 (4%)

Query: 4   MSIPL----LAAVSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQE 59
           M+  +     ++  SS ++ +RP ADF P++WG  FL        ID  T+++H  LK+E
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDK--NIDAETEKRHQQLKEE 58

Query: 60  VRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSHDLDR--DDLYVVSLRF 117
           VR+MI         KL  IDSVQRLGV+YHF KEIEDEL  + H+ +   +DLY  S+RF
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRF 118

Query: 118 RLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFT 177
           RL R+ G  +SCDVF KFKD++G FK S+ +D+RG+  L++A+YL V GEDILDEAI+FT
Sbjct: 119 RLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT 178

Query: 178 TSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLK 237
           T HL   ++  DH      L E++  +L+  +R+   R+EAR++L +Y   + H++ LL+
Sbjct: 179 THHLSLAVASLDHP-----LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLE 233

Query: 238 FAKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFG 297
           FAK+DFN+LQ  H+KE S + RWW DL F +K+PYARDR+VE Y W+  GV ++P  + G
Sbjct: 234 FAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLG 292

Query: 298 RIFASKVMCMLTIIDDTFDAYGTFEQLTHFTEAVTR 333
           R   +KV+ M +I+DDT+D+Y T+E+L  +T A+ R
Sbjct: 293 RKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIER 328
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A 337 Pentalenene synthase; antibiotic biosynthesis, ses 99.67
3bny_A 320 Aristolochene synthase; sesquiterpene cyclase, iso 99.65
1di1_A 300 Aristolochene synthase; sesquiterpene cyclase, iso 99.63
3kb9_A 382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 99.12
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.58
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-116  Score=901.00  Aligned_cols=316  Identities=44%  Similarity=0.837  Sum_probs=294.6

Q ss_pred             hhcCCccccCCCCCCCCCCccccccccCCchhhcchHHHHHHHHHHHHHHHHHhhchhcccchhhHhHHHHHhCcccccH
Q 019916           12 VSSSTEETVRPIADFHPTLWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFE   91 (334)
Q Consensus        12 ~~~~~~~~~r~~a~~~psiW~d~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGI~~hFe   91 (334)
                      .++...++.||+||||||+|||+||++.+.. ...+.+.+++++||+|||+||.+...+++++|+|||+||||||+|||+
T Consensus         8 ~~~~~~~~~R~~~~~~ps~W~d~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~   86 (550)
T 3m00_A            8 VANYEEEIVRPVADFSPSLWGDQFLSFSIKN-QVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFE   86 (550)
T ss_dssp             --------CCCCCCCCCCTTTTTTSCCCCCH-HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCH
T ss_pred             ccccccccCCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhH
Confidence            3444666789999999999999999975533 336789999999999999999743568999999999999999999999


Q ss_pred             HHHHHHHHHhhh-cCCCCChhhhhHHHHhhhhcCceeecccccceecccCccchhhhhhHHHHHhHHhhhccCCCCchHH
Q 019916           92 KEIEDELGKVSH-DLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDIL  170 (334)
Q Consensus        92 ~EI~~~L~~i~~-~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iL  170 (334)
                      +||+++|++||+ |....||++|||+|||||||||+||||||++|+|++|+|++++.+|++|||||||||||++|||+||
T Consensus        87 ~EI~~~L~~i~~~~~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iL  166 (550)
T 3m00_A           87 KEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL  166 (550)
T ss_dssp             HHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGG
T ss_pred             HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHH
Confidence            999999999998 5435799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCChHHHHHHhcCCCccccchhhHHHHhHH-hhcCCCCCcHHHHHHHHHhhHHHHHh
Q 019916          171 DEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDDLHDETLLKFAKLDFNILQAA  249 (334)
Q Consensus       171 deA~~Ft~~~L~~~~~~~~~~~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~-~Y~~~~~~n~~lLelAKlDFn~~Q~~  249 (334)
                      |+|+.||++||++.++     +++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||+|||+||++
T Consensus       167 deA~~fs~~~L~~~~~-----~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~  241 (550)
T 3m00_A          167 EDALAFSTIHLESAAP-----HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQML  241 (550)
T ss_dssp             TTHHHHHHHHHHHHGG-----GCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-----ccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            9999999999999886     46788999999999999999999999999999 99999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhCCCCCCCCcchhHHHHHHHHhhccccCCCcchhHHHHHHHHHhHhhhcccccCCCCHHHHHHHHH
Q 019916          250 HQKEASIMTRWWNDLGFPKKVPYARDRIVETYIWMLLGVSYDPNLAFGRIFASKVMCMLTIIDDTFDAYGTFEQLTHFTE  329 (334)
Q Consensus       250 hq~EL~~lsrWwk~~~l~~~L~faRdr~ve~yfw~~~~~~~EP~~s~~R~~~tK~~~litviDD~yD~yGtleEL~~ft~  329 (334)
                      ||+||++|+||||++||+++|||||||+||||||++ |++||||||.+|+++||+++|+|++||+||+|||+|||++||+
T Consensus       242 hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~-~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~  320 (550)
T 3m00_A          242 HKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTD  320 (550)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHH-HHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHH-HhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHH
Confidence            999999999999999998899999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 019916          330 AVTRL  334 (334)
Q Consensus       330 av~RW  334 (334)
                      ||+||
T Consensus       321 ai~RW  325 (550)
T 3m00_A          321 AIQRW  325 (550)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            99999
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 6e-66
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-64
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 3e-40
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-39
d1ps1a_ 311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 6e-07
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  204 bits (520), Expect = 6e-66
 Identities = 78/202 (38%), Positives = 129/202 (63%), Gaps = 8/202 (3%)

Query: 30  LWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYH 89
           LWG  FL  + D + + +   ++  ALK++ R M+  T  KLA  L++ID ++RLG++YH
Sbjct: 1   LWGDQFLSFSIDNQ-VAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYH 59

Query: 90  FEKEIEDELGKV-SHDLDRDDLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLIN 148
           FEKEI++ L ++ + + + +DL   +L+FRL RQ G  IS ++F KF+D+ GKFKESL +
Sbjct: 60  FEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLAS 119

Query: 149 DIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISISDHSHVNSKLPEQIRRSLQIP 208
           D+ G+ +L+EA+++    +DIL++A+AF+T HL+S             L EQ+  +L+  
Sbjct: 120 DVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSP-----LREQVTHALEQC 174

Query: 209 LRKAAARLEARYFLD-IYSRDD 229
           L K   R+E R+F+  IY ++ 
Sbjct: 175 LHKGVPRVETRFFISSIYDKEQ 196
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2 328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2 328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_ 311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 98.24
d1di1a_ 300 Aristolochene synthase {Fungus (Penicillium roquef 94.83
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.5e-71  Score=499.53  Aligned_cols=194  Identities=41%  Similarity=0.760  Sum_probs=182.5

Q ss_pred             CccccccccCCchhhcchHHHHHHHHHHHHHHHHHhhchhcccchhhHhHHHHHhCcccccHHHHHHHHHHhhh-cCCCC
Q 019916           30 LWGTHFLKSAADVETIDDATQEQHAALKQEVRRMITTTANKLAHKLHMIDSVQRLGVAYHFEKEIEDELGKVSH-DLDRD  108 (334)
Q Consensus        30 iW~d~fl~~~~~~~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGI~~hFe~EI~~~L~~i~~-~~~~~  108 (334)
                      +|||+||++.++ +...+.+.+++++||++||+||.+...++.++|+|||+||||||+|||++||+++|++||+ +.+.+
T Consensus         1 iWgd~Fl~~~~~-~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~~~~   79 (197)
T d5easa1           1 LWGDQFLSFSID-NQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN   79 (197)
T ss_dssp             CCGGGGSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCCCC
T ss_pred             CCCCcccCCCCC-chhHHHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCCCC
Confidence            799999997654 3457889999999999999999875578999999999999999999999999999999998 55568


Q ss_pred             ChhhhhHHHHhhhhcCceeecccccceecccCccchhhhhhHHHHHhHHhhhccCCCCchHHHHHHHHHHHHHHhhhhcc
Q 019916          109 DLYVVSLRFRLFRQQGVKISCDVFEKFKDDEGKFKESLINDIRGMFSLHEAAYLAVRGEDILDEAIAFTTSHLKSIISIS  188 (334)
Q Consensus       109 dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~G~F~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~  188 (334)
                      ||++|||+|||||||||+||||||++|+|++|+|++++++|++||||||||||++++||+|||+|++||++||++.++  
T Consensus        80 dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~--  157 (197)
T d5easa1          80 DLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP--  157 (197)
T ss_dssp             SHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGG--
T ss_pred             cHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHh--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             CCCCCCCChHHHHHHhcCCCccccchhhHHHHhHH-hhcCCC
Q 019916          189 DHSHVNSKLPEQIRRSLQIPLRKAAARLEARYFLD-IYSRDD  229 (334)
Q Consensus       189 ~~~~~~~~L~~~V~~aL~~P~h~~~~Rlear~yI~-~Y~~~~  229 (334)
                         +++++|+++|.|||++|+|||+|||||||||+ +|++++
T Consensus       158 ---~~~~~l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye~e~  196 (197)
T d5easa1         158 ---HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ  196 (197)
T ss_dssp             ---GCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCT
T ss_pred             ---hcCccHHHHHHHHhCCCccCCCcHHHHHHHHHHHhcccC
Confidence               67899999999999999999999999999995 798875
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure