Citrus Sinensis ID: 019922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHccccc
mpsngkkegtnvpllqdsastnvpllqgsastapspddsagtlTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGqafggkkyYMLGVYMQRSWIVLFICCVLLlplyvfaspvlkllgqpddvaelSGVVSLwllpvhfsfafqfplQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGyvacggcprtwtgfsmEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGwelmiplsffagtg
mpsngkkegtnvpllqdSASTNVPLLQGSastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
MPSNGKKEGTNVPLLQDSASTNVPLLQGsastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIawvslasllvhllvtwlfvYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFA***
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
**********NVPLLQDSASTNVPLLQ**************TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
***************************************AGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAG**
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
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MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q9LYT3 507 Protein TRANSPARENT TESTA no no 0.943 0.621 0.380 3e-58
Q9SIA4 476 MATE efflux family protei no no 0.895 0.628 0.344 3e-39
Q8GXM8 476 MATE efflux family protei no no 0.871 0.611 0.318 9e-39
Q9SIA3 476 MATE efflux family protei no no 0.889 0.623 0.319 1e-37
Q9SIA5 476 MATE efflux family protei no no 0.844 0.592 0.321 3e-37
Q9LUH3 469 MATE efflux family protei no no 0.889 0.633 0.317 4e-37
Q9LUH2 477 MATE efflux family protei no no 0.925 0.647 0.294 5e-36
Q9SIA1 477 MATE efflux family protei no no 0.916 0.641 0.302 8e-32
Q8RWF5 483 MATE efflux family protei no no 0.889 0.614 0.307 3e-31
Q8K0H1 567 Multidrug and toxin extru yes no 0.901 0.530 0.276 2e-27
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 195/334 (58%), Gaps = 19/334 (5%)

Query: 17  DSASTNVPLL-------QGSASTAPSPDD----SAGTLTRRFWI-----ESKKLWHIVGP 60
            S  T  PLL       Q +  ++P  ++       T+T R+W+     ESK LW + G 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGA 61

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           +I   + +Y +  +T  F GHLG L+LA  SIA   +    +G++LGMASA++T+CGQA+
Sbjct: 62  SIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAY 121

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G ++Y  +G+  QR+ ++     V L  LY ++ P+LK +GQ   +A    + +  ++P 
Sbjct: 122 GARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQ 181

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
            ++FA   P+QRFLQ+Q     +A++SL   L+H L+TWL    +  GL+G A+ LSFSW
Sbjct: 182 IYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSW 241

Query: 241 WVLIF--GMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILM 298
           W+L+   GM+  +    C  TWTGFS  AF  +W + KL+VAS VMLCLE WY + L+++
Sbjct: 242 WLLVAVNGMY-ILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVII 300

Query: 299 TGNLQNAKIAVDALSICMSINGWELMIPLSFFAG 332
           +G L N  I++DA+SICM    W++   L   A 
Sbjct: 301 SGLLSNPTISLDAISICMYYLNWDMQFMLGLSAA 334
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
224097194 488 predicted protein [Populus trichocarpa] 0.970 0.663 0.736 1e-141
356497726 491 PREDICTED: protein TRANSPARENT TESTA 12- 0.961 0.653 0.732 1e-138
302142014 521 unnamed protein product [Vitis vinifera] 0.961 0.616 0.730 1e-137
359492469 490 PREDICTED: protein TRANSPARENT TESTA 12- 0.961 0.655 0.730 1e-137
449438809 484 PREDICTED: protein TRANSPARENT TESTA 12- 0.946 0.652 0.712 1e-135
357485623 490 Protein TRANSPARENT TESTA [Medicago trun 0.931 0.634 0.746 1e-135
255586693 482 multidrug resistance pump, putative [Ric 0.952 0.659 0.724 1e-130
356508053 503 PREDICTED: protein TRANSPARENT TESTA 12 0.970 0.644 0.668 1e-129
350534468 447 ripening regulated protein DDTFR18 [Sola 0.892 0.666 0.711 1e-129
224067013 492 predicted protein [Populus trichocarpa] 0.892 0.605 0.738 1e-129
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/334 (73%), Positives = 278/334 (83%), Gaps = 10/334 (2%)

Query: 1   MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGP 60
           M SNG         + D     VPLL+    T    D     L  R  +ESKKLWHIVGP
Sbjct: 1   MSSNGA--------VLDYLEAKVPLLE--EKTKRDDDIVVQDLACRVGVESKKLWHIVGP 50

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
            IFSR+ SYSM VITQAFAGHLGDLELA ISIAN V+V F+FGLLLGMASALETLCGQAF
Sbjct: 51  AIFSRLTSYSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAF 110

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G KKYYMLGVYMQRSWIVLF+CC+LLLPLY+FASPVLKLLGQP+D+AELSG  ++W++P+
Sbjct: 111 GAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPL 170

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
           HFSFAFQFPLQRFLQSQLK MVIAWVS  +L+VH+ V+WL VYK+QLG+ GTA+TL+FSW
Sbjct: 171 HFSFAFQFPLQRFLQSQLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSW 230

Query: 241 WVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTG 300
           WVL+FG+ GY  CGGCP TWTGFS EAFS LWEF KLS ASGVMLCLENWYYR+LILMTG
Sbjct: 231 WVLVFGLLGYTICGGCPLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTG 290

Query: 301 NLQNAKIAVDALSICMSINGWELMIPLSFFAGTG 334
           NL+NA+IAVDALSICM+INGWE+MIPL+FFAGTG
Sbjct: 291 NLKNAEIAVDALSICMTINGWEMMIPLAFFAGTG 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|350534468|ref|NP_001234398.1| ripening regulated protein DDTFR18 [Solanum lycopersicum] gi|12231296|gb|AAG49032.1|AF204785_1 ripening regulated protein DDTFR18 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224067013|ref|XP_002302326.1| predicted protein [Populus trichocarpa] gi|222844052|gb|EEE81599.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2168210 486 AT5G65380 "AT5G65380" [Arabido 0.874 0.600 0.684 3.8e-110
TAIR|locus:2142544 489 AT5G10420 [Arabidopsis thalian 0.880 0.601 0.636 2.2e-105
TAIR|locus:2172477 491 AT5G44050 "AT5G44050" [Arabido 0.877 0.596 0.617 4.1e-104
TAIR|locus:2206960 494 AT1G33110 "AT1G33110" [Arabido 0.865 0.585 0.467 2.8e-73
TAIR|locus:2015368 484 AT1G47530 "AT1G47530" [Arabido 0.859 0.592 0.463 6.7e-72
TAIR|locus:2010401 522 RSH2 "AT1G12950" [Arabidopsis 0.853 0.545 0.463 8.6e-72
TAIR|locus:2088822 500 AT3G26590 "AT3G26590" [Arabido 0.859 0.574 0.466 2.9e-71
TAIR|locus:2144421 498 AT5G38030 "AT5G38030" [Arabido 0.940 0.630 0.433 4.8e-71
TAIR|locus:2037960 494 AT1G33080 "AT1G33080" [Arabido 0.865 0.585 0.456 1.6e-70
TAIR|locus:2037980 494 AT1G33090 "AT1G33090" [Arabido 0.865 0.585 0.446 1.6e-70
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 200/292 (68%), Positives = 231/292 (79%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             L  R  +E+KKLW IVGP IFSR+ +YSM VITQAFAGHLGDLELAAISI N V V FNF
Sbjct:    30 LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNF 89

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             GLLLGMASALETLCGQAFG KKY+MLGVYMQRSWIVLF CCVLLLP Y+F +PVLK LGQ
Sbjct:    90 GLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQ 149

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
             PDD+AELSGVV++W++P+HF+F   FPLQRFLQ QLK  V                    
Sbjct:   150 PDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFV 209

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
               ++LG++GT  T+S SWWV +  +  Y  CGGCP TWTG S EA + LWEF+KLS +SG
Sbjct:   210 DGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSG 269

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG 334
             VMLCLENWYYR+LI+MTGNLQNA+IAVD+LSICM+INGWE+MIPL+FFAGTG
Sbjct:   270 VMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAINGWEMMIPLAFFAGTG 321
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
cd13132 436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-103
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-33
pfam01554161 pfam01554, MatE, MatE 1e-27
cd13131 435 cd13131, MATE_NorM_like, Subfamily of the multidru 5e-24
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-23
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 9e-17
cd13133 438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-15
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 6e-13
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-12
PRK01766 456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-12
cd13137 432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-10
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-08
cd13138 431 cd13138, MATE_yoeA_like, Subfamily of the multidru 6e-08
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 8e-08
cd13143 426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-07
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-06
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-06
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 9e-06
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-05
cd13136 424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-04
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-04
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 5e-04
cd13135 429 cd13135, MATE_like_9, Uncharacterized subfamily of 0.001
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  308 bits (791), Expect = e-103
 Identities = 116/286 (40%), Positives = 181/286 (63%), Gaps = 2/286 (0%)

Query: 50  ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMA 109
           E+KKL  +  P + + +  YS+ V++  F GHLG LELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 110 SALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAEL 169
           SAL+TLCGQAFG K Y ++GVY+QR+ ++L +CCV +  L++   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL 229
           +G    WL+P  F++A   PL+R+LQ+Q   + + ++SL +LL+++L+ +L V+ + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 230 IGTAITLSFSWWVLIFGMFGYV-ACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288
           IG A+  S S+W+++  +  Y+    G   TW GFS EAF     F+KL++ S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 289 NWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG 334
            W + +L+L+ G L    +A+ A SIC++      MIPL       
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAAS 285

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK00187 464 multidrug efflux protein NorA; Provisional 100.0
PRK10189 478 MATE family multidrug exporter; Provisional 100.0
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766 456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.97
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.97
PRK00187464 multidrug efflux protein NorA; Provisional 99.93
PRK01766456 multidrug efflux protein; Reviewed 99.92
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.92
PRK10189478 MATE family multidrug exporter; Provisional 99.92
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.91
TIGR01695502 mviN integral membrane protein MviN. This model re 99.9
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.89
PRK15099 416 O-antigen translocase; Provisional 99.89
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.88
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.86
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.85
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.82
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.82
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.8
PRK15099416 O-antigen translocase; Provisional 99.78
PRK10459492 colanic acid exporter; Provisional 99.78
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.72
COG2244480 RfbX Membrane protein involved in the export of O- 99.71
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.66
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.66
PRK10459 492 colanic acid exporter; Provisional 99.57
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.47
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.45
COG2244 480 RfbX Membrane protein involved in the export of O- 99.36
KOG1347473 consensus Uncharacterized membrane protein, predic 99.25
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.98
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.95
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.75
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.19
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.61
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.79
COG4267 467 Predicted membrane protein [Function unknown] 95.62
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 95.57
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-39  Score=303.49  Aligned_cols=285  Identities=21%  Similarity=0.311  Sum_probs=264.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCchh
Q 019922           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (334)
Q Consensus        47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~i~~~~~~~~~~~~~~~i~~~~~~~~s~~~g~~~~~  126 (334)
                      .++..|+++++++|++++++++.+++.+|++++||++++++|+.++++++..++ +.+..+++.+..+++||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            467899999999999999999999999999999999999999999999999985 7899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcchhhHHHH
Q 019922          127 MLGVYMQRSWIVLFICCVLL-LPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (334)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (334)
                      ++++..++.+.+++.++++. .+.+++.++++.+++.++++.+.+.+|+++..++.|+..+..++.+++|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999555 55677999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hc-cCchhHHHHHHHHHHHHHHHHHHHHHhcC--CCCccCCCCHHhHhhHHHHHHHHHHH
Q 019922          206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGG--CPRTWTGFSMEAFSDLWEFVKLSVAS  281 (334)
Q Consensus       206 ~~~~~~~~~i~l~~~li~~-~~-~g~~G~~ia~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~  281 (334)
                      ++++++++|+++|++|+++ ++ ||+.|+++||.+++.+..++..+++++++  .+....+..+.+++.+|+++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 46 99999999999999999999999998874  23333344456778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 019922          282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGTG  334 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~s  334 (334)
                      +++...+...+.+.+.+++++|+  .++|+|++..++.++.++++.|+++|++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~  301 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVT  301 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  3677999999999999999999999863

>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 8e-45
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 2e-05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  158 bits (401), Expect = 8e-45
 Identities = 48/295 (16%), Positives = 117/295 (39%), Gaps = 10/295 (3%)

Query: 42  TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFN 101
               R+  E+  L  +  P + + +A   M  +    AG +  +++AA+SIA ++ +   
Sbjct: 2   NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS- 60

Query: 102 FGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161
               +G+  AL  +  Q  G  + + +   + +  I+  +  V ++ +      +++ + 
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 162 QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLF 221
             + +A  +      ++    ++     L+ F      T     +    LL+++ + W+F
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 222 VYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR---TWTGFSMEAFSDLWEF 274
           VY      +LG +G  +  +  +W+++  +  Y+           +  F      +L   
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL 240

Query: 275 VKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSF 329
            +L       L  E   + V+ L+   L +  +A  A  + ++ +    M P+S 
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSI 293
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.91
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.8e-31  Score=249.55  Aligned_cols=286  Identities=17%  Similarity=0.318  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCc
Q 019922           45 RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKK  124 (334)
Q Consensus        45 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~a~~~i~~~~~~~~~~~~~~~i~~~~~~~~s~~~g~~~  124 (334)
                      ...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..+++.+..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34568899999999999999999999999999999999999999999999997764 66788999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcchhhHHH
Q 019922          125 YYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIA  204 (334)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  204 (334)
                      +++.++.+++.+.+...++++..+++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877777788999888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-h---ccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCC--c-cCCCCHHhHhhHHHHHHH
Q 019922          205 WVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR--T-WTGFSMEAFSDLWEFVKL  277 (334)
Q Consensus       205 ~~~~~~~~~~i~l~~~li~~-~---~~g~~G~~ia~~i~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~  277 (334)
                      +.++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..+++++++...  + +.++.+.+++.+|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   699999999999999999998888887762211  1 122334566789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 019922          278 SVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSICMSINGWELMIPLSFFAGT  333 (334)
Q Consensus       278 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~  333 (334)
                      ++|..++...+++.+.+++.+++++|++  ++|+|+++.++.++.++++.+++++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~  297 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAV  297 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999854  56799999999999999999998764
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00