Citrus Sinensis ID: 019927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEEcEEEccHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MDAARKKAIFRAKLNAQkkekrinsplvrynefdqpvcrVCDVvlksdsqwdaHQASRKHHEAIKNikagatgnnsrmvsdaakpeagressrsesrsasqnaEIESSAKLgkartssvlpsnffdsqeakrpktatdsvklvdpdsnktsgvsakTQAMKSVVLENemdelpngnavdakkgqplkehpekskqsVDSEAKQIKgalpegffdnkEADLLArgikpvkpdvkDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAksrgssevarkeptkeelssdddseeiFAVDWRAQHL
Flexible Loop (DISEMBL)
mdaarkkaifraklnaqkkekrinsplvrynefdqpvCRVCDVVLKSDSQWDAHQasrkhheaiknikagatgnnsrmvSDAAkpeagressrsesrsasqnaeiessaklgkartssvlpsnffdsqeakrpktatdsvklvdpdsnktsgvsaktqAMKSVVLENEmdelpngnavdakkgqplkehpekskqsvdsEAKQIKGALPEGFFDNKEADLLargikpvkpdvkDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMieeyesvdqktfREKVEALRKKkmeweaasrsaksrgssevarkeptkeelssdddseeifAVDWRAQHL
Low Complexity Region (SEG)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPeagressrsesrsasQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFeeeeidaaemieeyeSVDQKTFREKVEALRKKKMEWEaasrsaksrgssEVARKEPTKeelssdddseeIFAVDWRAQHL
Disordered region (IsUnstruct)
************************SPLVRYNEFDQPVCRVCDVVLKSD***************************************************************************************************************************************************************************LLA****************************************************************************************************************
Disordered Region (DISOPRED)
***************************VRYNEFDQPVCRVCDVVLKSDSQWD***************************************************************************************************************************************************************FFDNKEAD**************************************************SVDQ*TF************************************************FAVDWRAQH*
Disordered Region (DISEMBL)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQ***********EAIKNIKAGATGNN******************************************SVLPSNFFDS************VKLVDP************QAMKSVVLENEMDELPNGNAVDAKKG******************KQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVE***************************************SEEIFAVDWRAQHL
Disordered Region (DISPRO)
********************KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG**************************************************************************************************************************************KGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRS***************************IFAVDWR**HL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q6DJ13	357	Zinc finger protein 830 O	yes	no	0.928	0.868	0.255	9e-12
Q8R1N0	363	Zinc finger protein 830 O	yes	no	0.922	0.848	0.272	1e-10
Q63ZM9	356	Zinc finger protein 830 O	N/A	no	0.811	0.761	0.249	7e-10
Q3MHS2	370	Zinc finger protein 830 O	yes	no	0.880	0.794	0.232	6e-09
Q6P0I6	326	Zinc finger protein 830 O	yes	no	0.541	0.555	0.231	0.0003
Q96NB3	372	Zinc finger protein 830 O	yes	no	0.149	0.134	0.34	0.0004

>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 58/368 (15%)

Query: 2   DAARKKAI----FRAKLNAQKK----EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDA 53
           DA +KK +     R  + A+++    +KRI SPL +YN     +C VC++ +KS+  W A
Sbjct: 3   DAGKKKLVQQEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPA 62

Query: 54  HQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGK 113
           H   ++H E +  +K    G+ + + S + K +      R  S   +Q ++     +   
Sbjct: 63  HILGKQHKEKVAELK----GSKANISSPSNKVQLHHIMKRKGSEPENQESKRIKGTEDQP 118

Query: 114 ARTSSVLPSNFFDSQEAKRPKTATD---SVKLV--------------DPDSNKTSGVSAK 156
               + LP  FF+++E    K A +   S+KL+                + N+ S    K
Sbjct: 119 TALKTKLPEGFFETEETSSAKHAAEKAPSLKLLAGDYEDDDEVEGEEYENVNEASTSLQK 178

Query: 157 TQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHP---------EKSKQSVDSEAKQIKGA 207
              +      +  D LP  +  ++K   PL  H          EK  +  D+ A+    A
Sbjct: 179 PAEIPLPPPTSSADRLP-ADFFESK--MPLVSHSGSVLKADIQEKIVERKDNTAE----A 231

Query: 208 LPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEE 267
           LPEGFFD+ EAD   R +   K  +  E++E++K I++ +  V D    EE +   +  +
Sbjct: 232 LPEGFFDDPEADAKVRKVDAPKDQMDKEWEEFQKEIRQ-VNSVSDAIVAEEDEEGRLDRQ 290

Query: 268 YESVDQK--TFREKVEALRKKKMEWEAASRSA-KSRGSSEVARKEPTKEELSSDDDSE-- 322
            + +D++   +R +VE LR  K   + A     KS+ S +       +EE+ SDD+    
Sbjct: 291 IDEIDEQIECYR-RVEHLRDLKDTLQDAKMEVLKSKSSKK------WQEEIGSDDEETLP 343

Query: 323 EIFAVDWR 330
            +   +WR
Sbjct: 344 SLLYKNWR 351

May act as a regulator of the cell cycle in embryos by participating in control of M phase.
Xenopus tropicalis (taxid: 8364)

>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 44/352 (12%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K
Sbjct: 24  LMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK 83

Query: 69  A--GAT-GNNSRMVSDAAKPEAGR-ESSRSESRSASQNAEIE-----SSAKLGKARTS-- 117
              GAT G ++  V  A K  A   ES  ++   AS   +++     SSA L  AR +  
Sbjct: 84  GAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAAPS 143

Query: 118 ----SVLPSNFFDSQEAKRPKTAT---DSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMD 170
                +LP ++ D +E +         DS K + PD+       A  +   S VL N+  
Sbjct: 144 KPGLGLLP-DYDDEEEEEEEGGGEERRDSSKHL-PDAQGKEHSLASPRETTSNVLPND-- 199

Query: 171 ELP-NGNAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARG 224
             P N N   A    PL  H    EK++  + V    +    ALPEGFFD+ E D   R 
Sbjct: 200 --PFNTNPPKA----PLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRK 253

Query: 225 IKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQK--TFREKVEA 282
           +   K  +  E+ E++K +++ +  + +    EE +   +  +   +D++   +R +VE 
Sbjct: 254 VDAPKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-RVEK 311

Query: 283 LRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSE--EIFAVDWRAQ 332
           LR ++ E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 312 LRNRQDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 359

Acts as an important regulator of the cell cycle in the preimplantation embryo by controlling different aspects of M phase.

Mus musculus (taxid: 10090)

>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 135/301 (44%), Gaps = 30/301 (9%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + +AK      +KRI SPL +YN      C VC+ ++KS+  W AH   ++H E +  +K
Sbjct: 18  LMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAELK 77

Query: 69  AGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQ 128
               G  +   S +   E  R + R  S    Q ++    ++   + +++ LP  FF+ +
Sbjct: 78  ----GTKATTSSPSNTIEYPRITKRKGSEPEKQESKRTKGSEDHPSASTTKLPEEFFEKE 133

Query: 129 EAKRPKTATDSVKLVDPDSNKTSGVSAKT--------QAMKSVVLENEMDELPNGNAVD- 179
           +      A  S+KL+  D        A+         +A  S++   E+   P  ++ D 
Sbjct: 134 KTSSAGNAP-SLKLLAGDYEDVDDDDAEEGEEYENAKEASSSLLKPAEIPLPPPTSSADN 192

Query: 180 -----AKKGQPLKEHPEKSKQSVDSEAKQIKG------ALPEGFFDNKEADLLARGIKPV 228
                 +   PL  H   S    D + K ++       ALPEGFFD+ E D   R +   
Sbjct: 193 LPADFFENKMPLVSH-SGSVLKADIQEKIVERKENTAEALPEGFFDDPEVDAKVRKVDAP 251

Query: 229 KPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQ--KTFREKVEALRKK 286
           K  +  E++E++K I++ +  V +    EE +   +  + + +D+  + +R +VE LR +
Sbjct: 252 KDQMDKEWEEFQKEIRQ-VNTVSEAIVAEEDEEGRLDRQIDEIDEQIQCYR-RVEHLRDR 309

Query: 287 K 287
           K
Sbjct: 310 K 310

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus laevis (taxid: 8355)

>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 55/349 (15%)

Query: 21  KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVS 80
           KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K GA G      +
Sbjct: 36  KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK-GAKGATQGPSA 94

Query: 81  DAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPS------NFFDS-QEAKRP 133
             A     R+++  ES+           AK  KA    V PS      NF  S +EA R 
Sbjct: 95  GTAPQPTKRKTTDVESQ----------DAKKAKASVDQVQPSTSASSANFEKSGKEATRV 144

Query: 134 KTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA------------VDAK 181
            ++   + L+ PD  +      + +        +    LP+                +  
Sbjct: 145 ASSKTGLGLL-PDYEEEEEEEEEEELGGGEERRDSSKHLPDAQGREHSLASPRETTSNVL 203

Query: 182 KGQPLKEHPEKS--------------KQSVDSEAKQIKGALPEGFFDNKEADLLARGIKP 227
              P   +P K+               + V    +    ALPEGFFD+ E D   R +  
Sbjct: 204 PNDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDA 263

Query: 228 VKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQK--TFREKVEALRK 285
            K  +  E+ E++K +++ +  + +    EE +   +  +   +D++   +R +VE LR 
Sbjct: 264 PKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-RVEKLRN 321

Query: 286 KKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSE--EIFAVDWRAQ 332
           ++ E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 322 RQDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 366

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Rattus norvegicus (taxid: 10116)

>sp|Q6P0I6|ZN830_DANRE Zinc finger protein 830 OS=Danio rerio GN=znf830 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 104/264 (39%), Gaps = 83/264 (31%)

Query: 19  KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRM 78
           ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     ++  
Sbjct: 31  RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTPA 90

Query: 79  V--SDAAKPEAGRESSRSESRSASQNAEIESSAKL------------------------- 111
              + A  P A   SS +  R+A         AKL                         
Sbjct: 91  PAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHYDDDDDDEGGA 150

Query: 112 GKARTS----SVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLEN 167
           G+ +T+    S LP++FFDS  A  P           P S+  SG  +K +  +S     
Sbjct: 151 GERKTAPPTDSALPADFFDSGPAPAP-----------PISH--SGSVSKAEQQES----- 192

Query: 168 EMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKP 227
                              +E PE   +S           LPEGFFD+   D   R +  
Sbjct: 193 -------------------QEPPENRPES-----------LPEGFFDDPVRDAQVRQVDT 222

Query: 228 VKPDVKDEYKEYEKLIQEDLKQVD 251
            K  ++ E++E++K    +++QV+
Sbjct: 223 PKDQLEREWEEFQK----EMRQVN 242

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Danio rerio (taxid: 7955)

>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 21 KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG 70
          KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K  
Sbjct: 36 KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGA 85

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
24461854	344	CTV.12 [Citrus trifoliata]	0.994	0.965	0.945	1e-176
357491925	325	Zinc finger protein [Medicago truncatula	0.967	0.993	0.586	8e-93
356499554	326	PREDICTED: zinc finger protein 830-like	0.949	0.972	0.574	5e-89
224065088	331	predicted protein [Populus trichocarpa]	0.976	0.984	0.584	4e-87
388512271	304	unknown [Lotus japonicus]	0.892	0.980	0.576	7e-87
356559669	326	PREDICTED: zinc finger protein 830-like	0.961	0.984	0.581	2e-85
255558696	375	Coiled-coil domain-containing protein, p	0.976	0.869	0.527	4e-83
449460630	305	PREDICTED: zinc finger protein 830-like	0.901	0.986	0.526	8e-78
225443180	328	PREDICTED: zinc finger protein 830-like	0.886	0.902	0.562	6e-75
297832920	313	hypothetical protein ARALYDRAFT_477529 [	0.913	0.974	0.514	1e-69

>gi|24461854|gb|AAN62341.1|AF506028_8 CTV.12 [Citrus trifoliata]

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/346 (94%), Positives = 329/346 (95%), Gaps = 14/346 (4%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH
Sbjct: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVL 120
           HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQN EIESSAKLGKARTSSVL
Sbjct: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNVEIESSAKLGKARTSSVL 120

Query: 121 PSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDA 180
           PSNFFDSQE KRPK  TDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDA
Sbjct: 121 PSNFFDSQEVKRPK--TDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDA 178

Query: 181 KKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYE 240
           KKGQPLKEHPEKSKQ+VDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYE
Sbjct: 179 KKGQPLKEHPEKSKQNVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYE 238

Query: 241 KLIQEDLKQVDDRFEEEE------------IDAAEMIEEYESVDQKTFREKVEALRKKKM 288
           KLIQEDLKQVDDRFEEEE            IDAAEMIEEYESVDQKTF E+VEALRKKKM
Sbjct: 239 KLIQEDLKQVDDRFEEEENINNLKWTCEMQIDAAEMIEEYESVDQKTFSERVEALRKKKM 298

Query: 289 EWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
           EWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Sbjct: 299 EWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 344

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491925|ref|XP_003616250.1| Zinc finger protein [Medicago truncatula] gi|355517585|gb|AES99208.1| Zinc finger protein [Medicago truncatula]

 Score =  346 bits (888), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 197/336 (58%), Positives = 242/336 (72%), Gaps = 13/336 (3%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI+SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKDKRIDSPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
           H EAI N+KA A G   +     AKP+  +  ++ E  S SQ    +S  ++ K ++SSV
Sbjct: 61  HREAITNLKANAAGLTKQ---SNAKPDIPK--AKPEQPSGSQFKIPKSPQEVPKPQSSSV 115

Query: 120 LPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDEL-PNGNAV 178
           LP +FFD+ +AK+ ++  DSV LVD D  +  G SA++    SV    E D    N N  
Sbjct: 116 LPPDFFDNNDAKKTRSEKDSVHLVDSDLGRNMGASAQS----SVSNSKEKDHFHGNNNPT 171

Query: 179 DAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKE 238
            +K  Q   E  + S +++D+E KQ KGALPEGFFDNKEADL ARGIK VKPDVKDEYKE
Sbjct: 172 QSKVNQATVETKQTSVKTIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKE 231

Query: 239 YEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAK 298
           +EKLIQEDL++VDDR EEEEIDAAEMIEE ESV+Q+  +EKVE L++K++E +A+   AK
Sbjct: 232 FEKLIQEDLQEVDDRMEEEEIDAAEMIEEAESVEQRNLKEKVEMLKRKRLELKAS--KAK 289

Query: 299 SRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
              SS V  KE   E+ SSDD+S E FAVDWRAQHL
Sbjct: 290 LSKSSGVVTKEARHEDSSSDDESGENFAVDWRAQHL 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499554|ref|XP_003518604.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 197/343 (57%), Positives = 238/343 (69%), Gaps = 26/343 (7%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI SPLVRYNEFD PVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKKKRIESPLVRYNEFDLPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDA----AKPEAGRESSRSESRSASQNAEIESSAKL 111
           H EAI N+KA A G    N ++ V+D     AKPE   +S         Q+   E+S  +
Sbjct: 61  HREAISNLKANAAGLTQHNIAKPVADTSFFKAKPEHSLDS---------QSKAPEASQVV 111

Query: 112 GKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDE 171
            K ++SSVLP  FFD   + +    T S  LVD D  + +GVSA++Q +    LE E   
Sbjct: 112 SKPQSSSVLPPGFFDDSNSGK----TRSEHLVDSDLGRKAGVSAQSQVLN---LEKEKGH 164

Query: 172 LPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPD 231
             + NA  +  GQ   E  +   +S D+E +QIKG LPEGFFDNKEADL ARGIK VKPD
Sbjct: 165 FHDNNAAKSNVGQAAMESRQTPVKSTDTEIQQIKGTLPEGFFDNKEADLRARGIKLVKPD 224

Query: 232 VKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWE 291
           VKDEYKE+EKLIQEDL++VDDR EEEEIDAAEMIEE E V+QK   EKVE L+K+++E +
Sbjct: 225 VKDEYKEFEKLIQEDLREVDDRLEEEEIDAAEMIEEEEVVEQKILSEKVEMLKKRRLELK 284

Query: 292 AASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
           AA+ +AK   SSE+  KE  +EE SSDD+SE   AVDWRAQHL
Sbjct: 285 AAN-AAKRSKSSEIVAKESRREEPSSDDESEGNLAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065088|ref|XP_002301664.1| predicted protein [Populus trichocarpa] gi|222843390|gb|EEE80937.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/339 (58%), Positives = 247/339 (72%), Gaps = 13/339 (3%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAA+KKA+FR+KLNAQ+KEK+I+SPLVRYNE DQPVCRVCDVVLKS+ QWDAHQASRKH
Sbjct: 1   MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNSRMVSDA-AKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
            EAI NIKA A     + V++A ++P A    S+    +  Q A+ ES  +L   R  S 
Sbjct: 61  IEAINNIKANAA--RLKNVNNAKSEPSAVSTGSKHADNAQLQVAKSESLTQL--PRPQSA 116

Query: 120 LPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVD 179
           LP +FFD++EAKR KT  D+VK  + DS+     S +T+A +S+ LE+E   LP+GN + 
Sbjct: 117 LPPDFFDNKEAKRQKT--DAVKPSELDSSLKPAGSIQTKATRSL-LEDETGGLPSGNHLQ 173

Query: 180 AKKGQPLK----EHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDE 235
            K  +  +           +  DS+AKQ +GALPEGFFDNKEADL ARGIKPVKPDV DE
Sbjct: 174 TKNTEDARGITNTPTPTPTEISDSQAKQGQGALPEGFFDNKEADLRARGIKPVKPDVNDE 233

Query: 236 YKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASR 295
           YKE+EKLIQ DL++VDDR EEEE+DAAE IEE E+++QK +RE+VE L+KKKME  AA  
Sbjct: 234 YKEFEKLIQGDLREVDDRLEEEEVDAAETIEEAETLEQKAYRERVELLKKKKMELMAARA 293

Query: 296 SAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
           S +S+G SEVA KE + E+ SSDDDS+  FAVDWRAQHL
Sbjct: 294 SERSKG-SEVASKESSHEDSSSDDDSDVNFAVDWRAQHL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512271|gb|AFK44197.1| unknown [Lotus japonicus]

 Score =  326 bits (836), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 196/340 (57%), Positives = 227/340 (66%), Gaps = 42/340 (12%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESNWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++     AKPE           S SQ    +SS ++ K +
Sbjct: 61  HREAISNLKANAAGLTQNNNAKREITKAKPEQP---------SVSQFKMPQSSQEVPKPQ 111

Query: 116 TSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG 175
           +SSVLP NFFD   A++  +  D                          LENE       
Sbjct: 112 SSSVLPPNFFDDSHARKASSEKD--------------------------LENEKGNFHAN 145

Query: 176 NAVDAK-KGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKD 234
           N   +K   Q   E  + S ++ D E K +K ALPEGFFDNKEADL ARGIKPV+PD+KD
Sbjct: 146 NTAQSKVSSQAAMETRQTSDKTADKETKPVKEALPEGFFDNKEADLRARGIKPVRPDIKD 205

Query: 235 EYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAAS 294
           EYKE+EKLIQEDLK+VDDRFEEEEIDAAEMIEE ESV+QK FREKVE L++K++E + AS
Sbjct: 206 EYKEFEKLIQEDLKEVDDRFEEEEIDAAEMIEEAESVEQKNFREKVELLKRKRLE-QKAS 264

Query: 295 RSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
           +SAK   SSEV  KE   EE SSDD+S   FAVDWRAQHL
Sbjct: 265 KSAKRSKSSEVVTKESRHEESSSDDESGGNFAVDWRAQHL 304

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559669|ref|XP_003548121.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 197/339 (58%), Positives = 242/339 (71%), Gaps = 18/339 (5%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++ V+D++  +A  E S       SQ    E+S  + K +
Sbjct: 61  HREAISNLKANAAGLTQHNNAKPVADSSFSKAKPEHSLD-----SQFKPPEASQLVSKPQ 115

Query: 116 TSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG 175
           +SSVLP  FFD  ++ +    T S  LVD D  + +GVSAK+Q      LE +  +  + 
Sbjct: 116 SSSVLPPGFFDDSDSGK----TRSEHLVDSDLGRKAGVSAKSQVSN---LEKDKGQFDDN 168

Query: 176 NAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDE 235
           N   +   Q   +  + S ++ D+E +Q+KG LPEGFFDNKEADL ARGIK VKPDVKDE
Sbjct: 169 NVAKSNVSQATTDSRQTSVKTTDTEIQQVKGILPEGFFDNKEADLRARGIKLVKPDVKDE 228

Query: 236 YKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASR 295
           YKE+EKLIQEDL++VDDR EEEEIDAAEMIEE E V+QK   EKVE L+K+++E +AA+ 
Sbjct: 229 YKEFEKLIQEDLQEVDDRLEEEEIDAAEMIEEEEVVEQKMLSEKVEMLKKRRLELKAAN- 287

Query: 296 SAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 334
           +AK   SSE+  KE  +EE SSDD+SEE FAVDWRAQHL
Sbjct: 288 AAKRSKSSEIVAKESRQEESSSDDESEENFAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558696|ref|XP_002520372.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223540419|gb|EEF41988.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 202/383 (52%), Positives = 247/383 (64%), Gaps = 57/383 (14%)

Query: 1   MDAA-RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDAA +KKA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCR+C+VVLKS+S W AHQASRK
Sbjct: 1   MDAAAKKKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRICNVVLKSESLWAAHQASRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSR--SESRSASQNAEIESSAKLGKARTS 117
           HHEAI NIK  A      +  ++ KPEA +E++R   E+ +   + + E S +L K ++S
Sbjct: 61  HHEAINNIKNAA----GHLRVNSTKPEAHKENTRPKYENDAELHDTKSEPSTRLTKPQSS 116

Query: 118 SVLPSNFFDSQ--EAKRPKTA--------------------------------------- 136
           SVLP++FFD+   E   PK A                                       
Sbjct: 117 SVLPADFFDTHKTETTLPKHAHYVELGDKMPEPSSKSSKHQSSSVLPPNFFDDPEAKRQK 176

Query: 137 TDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQS 196
            D+ K V+ +S+K SG SA T+     +LE+EMD   +GN ++ K     +E       +
Sbjct: 177 IDTAKSVNSNSHKKSGNSAYTKV--ESLLEDEMDG-SSGNDMETKNTGRAREFVHTVDIT 233

Query: 197 VDSE-AKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFE 255
             S   KQ+KGALPEGFFD+KEADL ARGIK VKPDVKDEYKE+EKLIQEDL++VDDR E
Sbjct: 234 GGSRYMKQVKGALPEGFFDDKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDDRLE 293

Query: 256 EEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEEL 315
           EEEIDAAEMIEE E+V+QKT+REKVE LRKKKME  AA RSAK R  S V+ K  +    
Sbjct: 294 EEEIDAAEMIEEAETVEQKTYREKVEFLRKKKMELIAA-RSAKRRRDSGVSGKMSSSNAE 352

Query: 316 SS----DDDSEEIFAVDWRAQHL 334
           SS    DDD  E FAVDWRAQHL
Sbjct: 353 SSTDDEDDDDNENFAVDWRAQHL 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460630|ref|XP_004148048.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus] gi|449516880|ref|XP_004165474.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 178/338 (52%), Positives = 232/338 (68%), Gaps = 37/338 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A++KA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCRVCD+VLKS++ WDAHQ+SR+
Sbjct: 1   MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIE--SSAKLGKARTS 117
           HHEAI+N+KA A G   R   +  K EA  E   +    + +  E+   +S++L K  +S
Sbjct: 61  HHEAIQNLKASAAG---RSGVENIKAEAPAELPNNRPIDSKEKKEMTGGTSSELPKRPSS 117

Query: 118 SVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA 177
           SVLPS+FFD Q AKR KT  D    ++ DS   SG  A++Q             +P  + 
Sbjct: 118 SVLPSDFFD-QNAKRLKTGKD----IETDSR--SGSIAQSQV------------IPKASD 158

Query: 178 VDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYK 237
           ++           +KS  +  SE KQIKGALPEGFFD+KEADL A GIK VKPDVKDEYK
Sbjct: 159 LN-----------KKSSMNAGSEGKQIKGALPEGFFDDKEADLRAHGIKLVKPDVKDEYK 207

Query: 238 EYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSA 297
           E+EKLIQEDL++VDDR EEEEIDAAEMIEE E+++QK +RE+VE L++KK+E ++   + 
Sbjct: 208 EFEKLIQEDLQEVDDRLEEEEIDAAEMIEEAETLEQKAYRERVELLKRKKIELKSKKSAE 267

Query: 298 KSRGSSEVARKEPTKEELSSDDDSEEI-FAVDWRAQHL 334
           +SR   ++  K+   +  SSDDD  +  + VDWRAQHL
Sbjct: 268 QSRAEPQIPTKDSQVDYSSSDDDDSDTNYTVDWRAQHL 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443180|ref|XP_002267521.1| PREDICTED: zinc finger protein 830-like [Vitis vinifera]

 Score =  287 bits (734), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 175/311 (56%), Positives = 219/311 (70%), Gaps = 15/311 (4%)

Query: 30  YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGR 89
           YNEFDQPVCRVCDV+LKS+S WDAHQASRKHHEAIKN+KA A G      ++ AKPEA  
Sbjct: 27  YNEFDQPVCRVCDVILKSESLWDAHQASRKHHEAIKNVKANAAG---LTRANNAKPEA-- 81

Query: 90  ESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDS-N 148
              + ES +   NA  E S  L KA+ SS LP++FFD+   K+ K+  D VK +DPDS N
Sbjct: 82  --PKPESSTVLSNATSEPSMNLQKAQLSSGLPADFFDNHVTKKQKSGNDDVKFLDPDSYN 139

Query: 149 KTSG-VSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEH----PEKSKQSVDSEAKQ 203
           KT G  SA+TQ+M+ +  +N +D L + ++   K G+    H     + S + V SE K+
Sbjct: 140 KTGGSASAQTQSMEPLESKNNLDGLSSSHS--EKMGKSGIRHARDLTQTSGKIVGSETKE 197

Query: 204 IKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAE 263
           +KGALPEGFFDNK+ADL ARGI PVKPDVKDEYKE+EKLIQEDLK+VD+R EEEE DAAE
Sbjct: 198 VKGALPEGFFDNKDADLRARGIVPVKPDVKDEYKEFEKLIQEDLKEVDNRLEEEEFDAAE 257

Query: 264 MIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEE 323
           MIEE ESV+QK + EKVE L+KKK+E +AA    +S+      + + +K + SS DDS+ 
Sbjct: 258 MIEEAESVEQKVYWEKVEMLKKKKLELKAARSGRRSKDPEVRGKGQSSKGDSSSGDDSDG 317

Query: 324 IFAVDWRAQHL 334
            F VDWRAQHL
Sbjct: 318 NFTVDWRAQHL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832920|ref|XP_002884342.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata] gi|297330182|gb|EFH60601.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 176/342 (51%), Positives = 225/342 (65%), Gaps = 37/342 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FR+KLNA+KK+ RI+SPLVRYNE DQPVCRVC+VVLKS+S WD HQASRK
Sbjct: 1   MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
           HHEAI N+KA A G     V    KP        +E+R A    + E+ AK  K++TSS 
Sbjct: 61  HHEAIDNLKASAAG-----VQRGTKP--------AETRPA----KTEALAKSSKSQTSSG 103

Query: 120 LPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG---- 175
           LP NFF++ E  R +        V+P  +K    S +T   ++    N    LP G    
Sbjct: 104 LPPNFFENHEPARAE--------VEPAISKNIEQSKQTIGSET---NNSKGPLPAGFFDN 152

Query: 176 NAVDAKKGQPLKEHPEKSKQSVDSEAKQI-KGALPEGFFDNKEADLLARGIKPVKPDVKD 234
              D+   +   E  +   Q+  SE K + KG LP GFFDNKEADLLARGIK VKPD+KD
Sbjct: 153 QKTDSSNTKTTSEPKQSQTQTTGSETKSVVKGNLPTGFFDNKEADLLARGIKLVKPDIKD 212

Query: 235 EYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAAS 294
           EYKE+EKLIQ+DL+ VD R EEEE+DAAE IEE E  +Q++++EKVE L+++K E +AA 
Sbjct: 213 EYKEFEKLIQDDLQVVDSRMEEEEVDAAETIEEEEQREQRSYKEKVEILKRRKRELKAA- 271

Query: 295 RSAKSRGSSEVARKEP--TKEELSSDDDSEEIFAVDWRAQHL 334
           R AK   +SE + K+P  T+EE  SD++ +E  AVDWRAQHL
Sbjct: 272 RLAKRSKTSEGSVKKPKKTEEESLSDEEDDEDSAVDWRAQHL 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2075422	313	AT3G02860 [Arabidopsis thalian	0.670	0.715	0.364	6.9e-31
MGI|MGI:1914233	363	Zfp830 "zinc finger protein 83	0.949	0.873	0.227	1.1e-13
UNIPROTKB|E2RNS2	371	ZNF830 "Uncharacterized protei	0.338	0.304	0.268	7.8e-12
UNIPROTKB|A3KN01	373	ZNF830 "Uncharacterized protei	0.338	0.302	0.260	8.7e-12
UNIPROTKB|Q96NB3	372	ZNF830 "Zinc finger protein 83	0.227	0.204	0.263	8e-11
RGD|1562573	370	Zfp830 "zinc finger protein 83	0.356	0.321	0.255	1.4e-10
ZFIN|ZDB-GENE-040426-1834	326	zgc:77398 "zgc:77398" [Danio r	0.152	0.156	0.294	6.6e-07
UNIPROTKB|F1NPL1	368	ZNF830 "Uncharacterized protei	0.350	0.317	0.246	0.00028
UNIPROTKB|I3L6H7	367	ZNF830 "Uncharacterized protei	0.718	0.653	0.227	0.00038

TAIR|locus:2075422 AT3G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 85/233 (36%), Positives = 118/233 (50%)

Query:   104 EIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMKSV 163
             +IE+ AK   ++TSS LP NFF+++E  R +      K ++  S  T G  ++T   K  
Sbjct:    88 KIEALAKSSNSQTSSGLPPNFFENREPARAEVEPAKSKNLE-QSKHTIG--SETNKSKGP 144

Query:   164 VLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAK-QIKGALPEGFFDNKEADLLA 222
             +     D        D+   +   E  +   Q+   E K  + G LP GFFDNKEADLLA
Sbjct:   145 LPAGFFDN----QKTDSSNTKTTSEPKQSQTQTTGPETKPMVNGNLPTGFFDNKEADLLA 200

Query:   223 RGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFXXXXXXXXXXXXXXXSVDQKTFREKVEA 282
              GIK VKPD+KDEYKE+EKLIQ+DL+ VD R                  +Q++++EKVE 
Sbjct:   201 HGIKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEEVDAAETIEEEEQREQRSYKEKVEI 260

Query:   283 LRKKKMEWEXXXXXXXXXXXX-EVARKEPTKXXXXXXXXXXXIFAVDWRAQHL 334
             L++KKME +              V + + T+             AVDWRAQHL
Sbjct:   261 LKRKKMELKAARLAKRSKTSEGSVKKPKKTEEESPSDEEDDEDSAVDWRAQHL 313

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1914233 Zfp830 "zinc finger protein 830" [Mus musculus (taxid:10090)]

 Score = 194 (73.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 79/347 (22%), Positives = 133/347 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKA--GAT-GNNSRMVSDAAKPXXXXXXXXXXXXXXX------QNAEIESSAKLGKARTS 117
             +K   GAT G ++  V  A K                      Q +   SSA L  AR +
Sbjct:    82 LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query:   118 SVLPS----NFFDSQEAKRPKTATDSVKLVDPDSNK-TSGVSAKTQAMKSVVLENEMDEL 172
                P       +D +E +  +   +  +    DS+K       K  ++ S   E   + L
Sbjct:   142 PSKPGLGLLPDYDDEEEEEEEGGGEERR----DSSKHLPDAQGKEHSLASP-RETTSNVL 196

Query:   173 PNGNAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARGIKP 227
             PN          PL  H    EK++  + V    +    ALPEGFFD+ E D   R +  
Sbjct:   197 PNDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDA 256

Query:   228 VKPDVKDEYKEYEKLIQEDLKQVDDRFXXXXXXXXXXXXXXXSVDQKT--FREKVEALRK 285
              K  +  E+ E++K +++ +  + +                  +D++   +R +VE LR 
Sbjct:   257 PKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-RVEKLRN 314

Query:   286 KKMEWEXXXXXXXXXXXXEVARKEPTKXXXXXXXXXXXIFAVDWRAQ 332
             ++ E +            E+ +KE              + + DWR +
Sbjct:   315 RQDEIKNKLKEVLTIK--ELQKKEEENVDSDDEGELQDLLSQDWRVK 359

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

UNIPROTKB|E2RNS2 ZNF830 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNF 124
             +K GA    ++  S +A P               Q+A+   ++ L + + S S LP+NF
Sbjct:    82 LK-GAR-EATQGPSSSAAPQSAKRKVPDADG---QDAKRLKASPLPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|A3KN01 ZNF830 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
 Identities = 31/119 (26%), Positives = 54/119 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNF 124
             +K GA    ++  S +A P               Q+A+   ++ + + + S S LP+NF
Sbjct:    82 LK-GAK-EAAQGPSASAVPQSTKRKAPDSES---QDAKRAKASLVPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|Q96NB3 ZNF830 "Zinc finger protein 830" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDA 82
             +K     +     S A
Sbjct:    82 LKGAKEASQGSSASSA 97

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1562573 Zfp830 "zinc finger protein 830" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
 Identities = 34/133 (25%), Positives = 50/133 (37%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESS-AKLGKARTSSVLPSNFF 125
             +K             A +P               +  ++ES  AK  KA    V PS   
Sbjct:    82 LKGAKGATQGPSAGTAPQPTKR------------KTTDVESQDAKKAKASVDQVQPSTSA 129

Query:   126 DSQE-AKRPKTAT 137
              S    K  K AT
Sbjct:   130 SSANFEKSGKEAT 142

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0001832 "blastocyst growth" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040426-1834 zgc:77398 "zgc:77398" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
 Identities = 15/51 (29%), Positives = 30/51 (58%)

Query:    19 KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69
             ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+
Sbjct:    31 RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKS 81

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|F1NPL1 ZNF830 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 31/126 (24%), Positives = 51/126 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAI-- 64
             + + R K      +KRI SP  +Y       C +C   +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKKRQNADKKRIESPFAKYPRLGHLSCTLCSAPVKSELLWQTHVLGKQHRERVAE 81

Query:    65 -KNIKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTSSVLPSN 123
              K  K  A+G+ +   S A K                 + +  +S       ++S LP++
Sbjct:    82 LKGAKQAASGSAAGASSHAVKRKTADAESTQLKRSKGTDDKPHTST------STSGLPAD 135

Query:   124 FFDSQE 129
             FFD  E
Sbjct:   136 FFDESE 141

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|I3L6H7 ZNF830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
 Identities = 60/264 (22%), Positives = 104/264 (39%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAG--ATGNNS--RMVSDA---------AKPXXXXXXXXXXXXXXXQNAEIESS-AKLG 112
             +K    AT   S  R   DA         A P                    ES+   L 
Sbjct:    82 LKGAKEATQGPSAKRKAPDAESQDAKRVKASPVPQVQPSTSALPTNFDKTGKESTRTTLS 141

Query:   113 KARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKT-SGVSAKTQAMKSVVLENEMDE 171
             K+    +LP ++ D +E +  +      +    D++K  S V +K  ++ S   E     
Sbjct:   142 KSSGLGLLP-DYEDEEEEEEEEGQGGGGEGKKGDASKQPSNVPSKEHSLPSS-REASGSR 199

Query:   172 LPNGNAVDAKKGQPLKEHPEK-SKQSVDSEAKQIKGALPEGFFDN--KEADLLARGIKPV 228
             LP+G +       PL  H     K  +  +  + +    E   +    + ++ AR  K  
Sbjct:   200 LPSGFSDTNPPKAPLIPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEIDARVRKVD 259

Query:   229 KPDVKDEY-KEYEKLIQEDLKQVD 251
              P  KD+  KE+++  Q+ ++QV+
Sbjct:   260 AP--KDQMDKEWDEF-QKAMRQVN 280


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.125   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       281   0.00083  115 3  11 23  0.46    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.73u 0.10s 27.83t   Elapsed:  00:00:02
  Total cpu time:  27.73u 0.10s 27.83t   Elapsed:  00:00:02
  Start:  Fri May 10 15:31:20 2013   End:  Fri May 10 15:31:22 2013

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	6e-06
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 42.1 bits (100), Expect = 6e-06
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 CRVCDVVLKSDSQWDAHQASRKH 60
          C +C+V   S+SQ  +H   +KH
Sbjct: 3  CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 QPVCRVCDVVLKSDSQWDAHQASRKH 60
          Q  C  CD   KS++  + H  S+KH
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 31/229 (13%), Positives = 65/229 (28%), Gaps = 5/229 (2%)

Query: 103  AEIESSAKLGKARTSSVLPSN---FFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQA 159
             EI    +L                   ++ K+  +A  S K     ++K      K + 
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKL 1209

Query: 160  MKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEAD 219
                  +       +    D ++    K+   K  +S  + + +      E   D+   +
Sbjct: 1210 DDKPDNKKSNSSGSDQED-DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKE 1268

Query: 220  LLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREK 279
               +        V+       K    +           +    + +E   +  +K  + +
Sbjct: 1269 GKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSE 1328

Query: 280  VEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVD 328
             +  RKKK +      SA         R    K + SS+DD +      
Sbjct: 1329 KKTARKKKSKTRVKQASASQSSRLL-RRPRKKKSDSSSEDDDDSEVDDS 1376

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG3032	264	consensus Uncharacterized conserved protein [Funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.88
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.52
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.69
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	96.62
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.61
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	95.69
PLN02748	468	tRNA dimethylallyltransferase	94.57
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	88.58
KOG4727	193	consensus U1-like Zn-finger protein [General funct	88.06
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	86.6

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-59  Score=432.81  Aligned_cols=261  Identities=42%  Similarity=0.657  Sum_probs=195.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHHhhhhcCCCCCCCCC
Q 019927            2 DAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSD   81 (334)
Q Consensus         2 ~~~~~ka~~R~llr~~r~~~rI~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~~~~~~~~~~~~   81 (334)
                      ..|++|+|||.+|+..+...||++|||+||.+|+|+|+|||++|| ++||++|++||+||++|..||-...        .
T Consensus         2 nq~~~krl~k~k~~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~--------K   72 (264)
T KOG3032|consen    2 NQAKKKRLFKSKLNAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGS--------K   72 (264)
T ss_pred             chHHHHHHHHHHhhccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhc--------c
Confidence            348999999999999999999999999999999999999999999 9999999999999999999982111        1


Q ss_pred             CCCCCCCCCCCCCCCcccchhhhhhhhhhccCCCCCCCCCCCccCccccCCCCccCCCccccCCCCCcccCcccccccch
Q 019927           82 AAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTATDSVKLVDPDSNKTSGVSAKTQAMK  161 (334)
Q Consensus        82 ~a~p~~~~~~~k~~~~~~~~~k~~k~~~~~~~~~~~S~LP~dFFd~~~~~~~~~~~~~~~ll~~d~~~~~~~~~~~~~~~  161 (334)
                      .+++.+   .+-+..+.++..+..     .-+.+.+|.||.+||+....+-+          .|+.       .++.   
T Consensus        73 v~k~~~---T~~p~~p~spn~kts-----~~pnk~pstlPdk~~~~eqekh~----------~gd~-------e~ka---  124 (264)
T KOG3032|consen   73 VAKTRP---TKIPALPKSPNSKTS-----FFPNKEPSTLPDKSKNLEQEKHT----------IGDE-------ENKA---  124 (264)
T ss_pred             cccCcC---ccCccCCCCCCcccc-----ccCCCCCCcCCCCCcchhcccCC----------CCcc-------chhc---
Confidence            111111   111111100111110     01122358899999887533220          0011       1110   


Q ss_pred             hhhhhhcccCCCCCCccccCCCCCCCCCCccccccchhhhhhhcCCCCCCCCCChhhhhhhhcCCCCCCChHHHHHHHHH
Q 019927          162 SVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEK  241 (334)
Q Consensus       162 ~~~~~~~~~~LP~d~~~~~~~~~~~~~~s~s~~k~~~~E~~~~~~~LPeGFFDD~~~DaKvR~v~~~k~~~eeEw~~FqK  241 (334)
                             .|     +|++.+                  +..++.++||+|||||+..|+.||+|..++++|++||++||+
T Consensus       125 -------qG-----nfs~~p------------------enent~e~lPegFFDdke~d~~vr~~~e~k~~~d~Ey~rfqk  174 (264)
T KOG3032|consen  125 -------QG-----NFSNQP------------------ENENTNENLPEGFFDDKEADLLVRGIKEVKPDIDDEYKRFQK  174 (264)
T ss_pred             -------cc-----cccCCc------------------cccchhhcCcccccCchhhhhhhhhccccchhHHHHHHHHHH
Confidence                   11     233322                  335689999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhHhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccccCCCcccCCCCCch
Q 019927          242 LIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDS  321 (334)
Q Consensus       242 eI~ee~~es~~~~Eeee~~a~~ere~~eidEQi~~~~RV~~L~~kk~~~~~~~~~k~~~~~~~~~~~~~~~~~sssdde~  321 (334)
                      +|++++++++.|+||++++++..|++.||||||.||+||+.|+.++++++.+.+.++...  + ..++  .++|++|.|+
T Consensus       175 eI~~~~tesd~iveEeeed~~l~reieeidEQi~~~kkvekl~~qK~ellnkkRe~~~k~--e-v~ke--~eesddDged  249 (264)
T KOG3032|consen  175 EIQDDLTESDSIVEEEEEDAALTREIEEIDEQISYKKKVEKLKRQKMELLNKKREKTSKG--E-VKKE--EEESDDDGED  249 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--c-cCcc--cccCccccch
Confidence            999999999999999999999999999999999999999999999999998754443331  1 1111  3666666777


Q ss_pred             hhhhhhcccccCC
Q 019927          322 EEIFAVDWRAQHL  334 (334)
Q Consensus       322 d~d~~~DWRaK~~  334 (334)
                      ++++++|||+|||
T Consensus       250 dDl~a~DWRaKnl  262 (264)
T KOG3032|consen  250 DDLSAVDWRAKNL  262 (264)
T ss_pred             hhhhhhhhhhhhc
Confidence            7788889999996

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.88  E-value=8.2e-06  Score=54.07  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CCceeecccccccCcchhHHhhCChhHHHHHHH
Q 019927           34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (334)
Q Consensus        34 GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~   66 (334)
                      |...|.+|+..+.+...|..|+.|++|+.++.+
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            678999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.52  E-value=3.9e-05  Score=48.98  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=25.1

Q ss_pred             CceeecccccccCcchhHHhhCChhHH
Q 019927           35 QPVCRVCDVVLKSDSQWDAHQASRKHH   61 (334)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr   61 (334)
                      |..|.+|+..+.++..|..|+.|+.||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            568999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.00097  Score=68.58  Aligned_cols=35  Identities=31%  Similarity=0.633  Sum_probs=33.8

Q ss_pred             ceeecccccccCcchhHHhhCChhHHHHHHHHhhh
Q 019927           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG   70 (334)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~   70 (334)
                      |.|.+||...|+|..|.-|..||+|+++|+.|+++
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999864

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.62  E-value=0.0027  Score=58.76  Aligned_cols=51  Identities=18%  Similarity=0.381  Sum_probs=45.5

Q ss_pred             cCCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHHhhhhcC
Q 019927           23 INSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATG   73 (334)
Q Consensus        23 I~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~~~~   73 (334)
                      -+.||..-|.+|++.|.||+..-.+|+-.-.|..+|+|++|+.+...++..
T Consensus        41 ~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~ekss   91 (222)
T COG5246          41 MDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKSS   91 (222)
T ss_pred             ccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhhc
Confidence            457999999999999999999999999999999999999999998655443

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.61  E-value=0.001  Score=41.13  Aligned_cols=25  Identities=28%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             ceeecccccccCcchhHHhhCChhH
Q 019927           36 PVCRVCDVVLKSDSQWDAHQASRKH   60 (334)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~H   60 (334)
                      +.|.+|++...++..|..|+.|+.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            4699999999999999999999998

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.69  E-value=0.013  Score=54.66  Aligned_cols=62  Identities=16%  Similarity=0.306  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhhhccCCCccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927            6 KKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (334)
Q Consensus         6 ~ka~~R~llr~~r~~~rI~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (334)
                      |+--+|.|+-..-  ---..||.--|-+|.+.|.||+..-.+|.-.-+|..||+|.+||++..+
T Consensus        26 RrerlrqLaleti--dl~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa   87 (222)
T KOG0227|consen   26 RRERLRQLALETI--DLNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA   87 (222)
T ss_pred             HHHHHHHHHHhhc--ccccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence            4444455444321  1223599988999999999999999999999999999999999998543

>PLN02748 tRNA dimethylallyltransferase

Probab=94.57  E-value=0.023  Score=58.81  Aligned_cols=36  Identities=31%  Similarity=0.759  Sum_probs=32.0

Q ss_pred             CCceeecccc-cccCcchhHHhhCChhHHHHHHHHhh
Q 019927           34 DQPVCRVCDV-VLKSDSQWDAHQASRKHHEAIKNIKA   69 (334)
Q Consensus        34 GqL~C~lC~~-~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (334)
                      -+.+|-+|+. .+..|--|..|+.|+.||.++.++++
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            3457999997 79999999999999999999998875

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=88.58  E-value=0.22  Score=43.58  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHHh
Q 019927           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (334)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk   68 (334)
                      ..||--|+.|....=++..-..|..+|.|+.+|..|+
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~   90 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR   90 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence            5799999999999889999999999999999999987

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=88.06  E-value=0.6  Score=43.10  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             CccccCCCCCceeecccccccCcchhHHhhCChhHHHHHHHH
Q 019927           26 PLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (334)
Q Consensus        26 P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~l   67 (334)
                      +-+.-+..|..-|-||+.+||.=.-+--||++|.|.-|+..+
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            333446778899999999999877788999999999998864

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.60  E-value=0.54  Score=32.89  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             ceeecccccccCcc--hhHHhhCChhHHHHHHH
Q 019927           36 PVCRVCDVVLKSDS--QWDAHQASRKHHEAIKN   66 (334)
Q Consensus        36 L~C~lC~~~vksEs--lW~aH~~Sk~Hr~~~~~   66 (334)
                      --|-.|+.-|.+.+  .|..|..|.+|+.|+++
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            35899999995444  79999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.39
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.72
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.25
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.02

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.39  E-value=0.002  Score=53.74  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHHh
Q 019927           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (334)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk   68 (334)
                      ..+.+.|.+|++.+.++..+..|+.||.|+.++.+++
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            4678899999999999999999999999999998764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.72  E-value=0.015  Score=49.25  Aligned_cols=39  Identities=15%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             CCCCCceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927           31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (334)
Q Consensus        31 n~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (334)
                      +..|+..|..|+....+++.+..|.+||.|+.++..|+.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            356899999999999999999999999999999999873

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.25  E-value=0.022  Score=56.51  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=32.0

Q ss_pred             CCceeecccc------cccCcchhHHhhCChhHHHHHHHHhhh
Q 019927           34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG   70 (334)
Q Consensus        34 GqL~C~lC~~------~vksEslW~aH~~Sk~Hr~~~~~lk~~   70 (334)
                      -+-+|-+|+.      .+-.|--|..|+.|+.||.++.+.++-
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3458999997      788899999999999999999987653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.02  E-value=0.023  Score=47.22  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (334)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (334)
                      .+.|.+|++.+.+++.=.+|..|+.|+.+|..+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.66
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.29
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	91.44

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.9e-06  Score=60.63  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             CCCCceeecccccccCcchhHHhhCChhHHHHHHHHhh
Q 019927           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (334)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (334)
                      ..||.-|++|+...+++..|..|..||+|+.+|.+|+.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            36999999999999999999999999999999999974

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.29  E-value=0.021  Score=40.50  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=29.3

Q ss_pred             ceeecccccccCcchhHHhhCChhHHHHHHHH
Q 019927           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (334)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~l   67 (334)
                      -.|.|||+..-+..+=..|..||.|..++...
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            38999999999999999999999999988754

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.44  E-value=0.045  Score=40.49  Aligned_cols=34  Identities=41%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CceeecccccccCcchhHHhhCChhHHHHHHHHh
Q 019927           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (334)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk   68 (334)
                      -..|-+|++++-+||---+|--|++|..+|..+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999998753