Citrus Sinensis ID: 019941

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---

MLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

cHHHHHcccHHHHHHHHHHHHcccccccccEEccccccccEEEEEccHHHHHHHHHHccccccccccccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHccccEEEEEcccHHHHHHHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEccc

cHHHHHEcccHHHHccHHHHHHHEEEHHHEEEEcccccccEEEEcccHHHHHHHHHHHHcccccccccccccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc

MLQKLLSSneatlrdnanlrqkslvpmgkvemllpmeigdytdffssmhhakncgtifrgpanavpanwfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsNFKYLYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp

mlqkllssneatlrdnanlrqkslvpmgkVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscvVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp

MLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

************************VPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****

MLQKLL*SNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MxxxxxxxxxxxxxxxxxxxxxSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		333	2.2.26 [Sep-21-2011]
A5PKH3		419	Fumarylacetoacetase OS=Bo	yes	no	0.993	0.789	0.602	1e-123
P16930		419	Fumarylacetoacetase OS=Ho	yes	no	0.990	0.787	0.595	1e-119
P25093		419	Fumarylacetoacetase OS=Ra	yes	no	0.990	0.787	0.589	1e-119
P35505		419	Fumarylacetoacetase OS=Mu	yes	no	0.990	0.787	0.583	1e-117
Q1ZXQ1		427	Fumarylacetoacetase OS=Di	yes	no	0.990	0.772	0.564	1e-111
Q00770		431	Fumarylacetoacetase OS=Em	yes	no	0.981	0.758	0.539	5e-95
O06724		301	Uncharacterized protein Y	yes	no	0.378	0.418	0.269	1e-05
Q59050		237	Uncharacterized protein M	yes	no	0.249	0.350	0.279	6e-05
Q2KIB0		314	Fumarylacetoacetate hydro	no	no	0.468	0.496	0.293	0.0001
O28058		250	Uncharacterized protein A	no	no	0.357	0.476	0.293	0.0002

>sp\|A5PKH3\|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1	Back alignment and function desciption

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 200/332 (60%), Positives = 251/332 (75%), Gaps = 1/332 (0%)

Query: 1   MLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRG 60
            LQ LLS+++A LRD+  LRQ++        M LP  IGDYTDF+SS HHA N G +FRG
Sbjct: 84  FLQNLLSASQARLRDDVELRQRAFTSQASATMYLPATIGDYTDFYSSRHHATNVGVMFRG 143

Query: 61  PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA 120
             NA+  NW HLP+ YHGRASSVV+SGT I RP GQ  P  + PP +G  + LDFELEMA
Sbjct: 144 KENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQMRPDDSKPPVYGACKLLDFELEMA 203

Query: 121 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 180
             VGPGN+LG+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+
Sbjct: 204 FFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDIQKWEYVPLGPFLGKSFGTTISPWV 263

Query: 181 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 240
           V +DAL PFA  +P+QDP+PLPYL       +DI+L V +K  G   +  + RSNFKY+Y
Sbjct: 264 VPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINLSVALKGEGMSQAATICRSNFKYMY 323

Query: 241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 299
           WT+ QQL HH++NGCNL+ GDLL +GTISGPEPES GC+LEL+W G + + L +G TRKF
Sbjct: 324 WTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESFGCMLELSWKGTRAVELGNGQTRKF 383

Query: 300 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331
           L DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct: 384 LLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2

>sp\|P16930\|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2	Back alignment and function description

>sp\|P25093\|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1	Back alignment and function description

>sp\|P35505\|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2	Back alignment and function description

>sp\|Q1ZXQ1\|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1	Back alignment and function description

>sp\|Q00770\|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3	Back alignment and function description

>sp\|O06724\|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1	Back alignment and function description

>sp\|Q59050\|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1	Back alignment and function description

>sp\|Q2KIB0\|FAHD2_BOVIN Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Bos taurus GN=FAHD2 PE=2 SV=1	Back alignment and function description

>sp\|O28058\|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
224086373		419	predicted protein [Populus trichocarpa]	0.990	0.787	0.857	1e-168
255559084		421	fumarylacetoacetate hydrolase, putative	0.990	0.783	0.863	1e-168
359495556		419	PREDICTED: fumarylacetoacetase-like [Vit	0.993	0.789	0.849	1e-167
147771009		419	hypothetical protein VITISV_033628 [Viti	0.993	0.789	0.849	1e-167
297741813		8769	unnamed protein product [Vitis vinifera]	0.954	0.036	0.849	1e-162
297844060		421	hypothetical protein ARALYDRAFT_471353 [	0.996	0.788	0.807	1e-161
22329501		421	fumarylacetoacetase [Arabidopsis thalian	0.996	0.788	0.807	1e-160
357447871		421	Fumarylacetoacetase [Medicago truncatula	0.996	0.788	0.789	1e-158
449434018		430	PREDICTED: fumarylacetoacetase-like [Cuc	0.993	0.769	0.795	1e-157
388508774		421	unknown [Lotus japonicus]	0.996	0.788	0.786	1e-155

>gi\|224086373\|ref\|XP_002307870.1\| predicted protein [Populus trichocarpa] gi\|118481189\|gb\|ABK92546.1\| unknown [Populus trichocarpa] gi\|222853846\|gb\|EEE91393.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 283/330 (85%), Positives = 307/330 (93%)

Query: 2   LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGP 61
           LQ LLS++EA LRDN NLR+KSLVPM KVEMLLP+ IGDYTDFFSSMHHA+NCG +FRGP
Sbjct: 89  LQNLLSADEAKLRDNPNLREKSLVPMSKVEMLLPIAIGDYTDFFSSMHHARNCGIMFRGP 148

Query: 62  ANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAA 121
            NA+  NWF LPIAYHGR+SS+V+SGTDI+RPRGQ  PSGNSPP FGPS+KLDFELEMAA
Sbjct: 149 ENAINPNWFQLPIAYHGRSSSIVVSGTDIIRPRGQGHPSGNSPPYFGPSRKLDFELEMAA 208

Query: 122 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 181
           VVGPGNELGKP+DVNEA DHIFG++LMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV
Sbjct: 209 VVGPGNELGKPVDVNEAGDHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 268

Query: 182 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 241
           TLDALEPFACD+PKQDPQPLPYLAEKISKNYDISLEVQIKPAG+EDSCVVTRSNF +LYW
Sbjct: 269 TLDALEPFACDAPKQDPQPLPYLAEKISKNYDISLEVQIKPAGQEDSCVVTRSNFNHLYW 328

Query: 242 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLE 301
           T+TQQLAHHTINGCNLR GDLLG+GTISGPEPES GCLLELTWNGQK LSL+G TRKFLE
Sbjct: 329 TVTQQLAHHTINGCNLRPGDLLGSGTISGPEPESYGCLLELTWNGQKSLSLNGTTRKFLE 388

Query: 302 DGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331
           DGDEV F+G  KG+GY VGFGTCSGKI+PS
Sbjct: 389 DGDEVVFSGCSKGDGYKVGFGTCSGKILPS 418

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255559084\|ref\|XP_002520564.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi\|223540224\|gb\|EEF41797.1\| fumarylacetoacetate hydrolase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359495556\|ref\|XP_003635021.1\| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi\|297741817\|emb\|CBI33122.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147771009\|emb\|CAN77935.1\| hypothetical protein VITISV_033628 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297741813\|emb\|CBI33118.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297844060\|ref\|XP_002889911.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi\|297335753\|gb\|EFH66170.1\| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|22329501\|ref\|NP_172669.2\| fumarylacetoacetase [Arabidopsis thaliana] gi\|20334820\|gb\|AAM16166.1\| At1g12050/F12F1_8 [Arabidopsis thaliana] gi\|332190709\|gb\|AEE28830.1\| fumarylacetoacetase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357447871\|ref\|XP_003594211.1\| Fumarylacetoacetase [Medicago truncatula] gi\|87241152\|gb\|ABD33010.1\| Fumarylacetoacetase [Medicago truncatula] gi\|355483259\|gb\|AES64462.1\| Fumarylacetoacetase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449434018\|ref\|XP_004134793.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi\|449516307\|ref\|XP_004165188.1\| PREDICTED: fumarylacetoacetase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388508774\|gb\|AFK42453.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
TAIR\|locus:2008845		421	FAH "AT1G12050" [Arabidopsis t	0.996	0.788	0.780	1.2e-145
UNIPROTKB\|A5PKH3		419	FAH "Fumarylacetoacetase" [Bos	0.990	0.787	0.592	1.4e-110
UNIPROTKB\|F1MYZ7		419	FAH "Fumarylacetoacetase" [Bos	0.990	0.787	0.592	1.4e-110
UNIPROTKB\|F1NYW8		421	FAH "Uncharacterized protein"	0.993	0.786	0.605	6.1e-110
UNIPROTKB\|F1RIF3		419	FAH "Uncharacterized protein"	0.990	0.787	0.589	6.3e-108
UNIPROTKB\|P16930		419	FAH "Fumarylacetoacetase" [Hom	0.990	0.787	0.583	8.1e-108
UNIPROTKB\|Q53XA7		349	DKFZp686F13224 "Fumarylacetoac	0.990	0.945	0.583	8.1e-108
RGD\|61932		419	Fah "fumarylacetoacetate hydro	0.990	0.787	0.574	2.5e-106
MGI\|MGI:95482		419	Fah "fumarylacetoacetate hydro	0.990	0.787	0.570	1.7e-105
UNIPROTKB\|E2RS63		418	FAH "Uncharacterized protein"	0.993	0.791	0.570	4.1e-104

TAIR\|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1423 (506.0 bits), Expect = 1.2e-145, P = 1.2e-145
 Identities = 259/332 (78%), Positives = 290/332 (87%)

Query:     2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGP 61
             LQ++LSSNE  LRDN  LR+KS   M KVEM++PM IGDYTDFF+SMHHAKNCG +FRGP
Sbjct:    90 LQRILSSNEPILRDNDVLRRKSFHQMSKVEMIVPMVIGDYTDFFASMHHAKNCGLMFRGP 149

Query:    62 ANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAA 121
              NA+  NWF LPIAYHGRASS+VISGTDI+RPRGQ              +KLDFELEMAA
Sbjct:   150 ENAINPNWFRLPIAYHGRASSIVISGTDIIRPRGQGHPQGNSEPYFGPSKKLDFELEMAA 209

Query:   122 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 181
             VVGPGNELGKPIDVN AADHIFG++LMNDWSARDIQAWEYVPLGPFLGKSFGTT+SPWIV
Sbjct:   210 VVGPGNELGKPIDVNNAADHIFGLLLMNDWSARDIQAWEYVPLGPFLGKSFGTTISPWIV 269

Query:   182 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 241
             TLDALEPF C +PKQDP PLPYLAEK S NYDISLEVQ+KP+G++DSCV+T+SNF+ LYW
Sbjct:   270 TLDALEPFGCQAPKQDPPPLPYLAEKESVNYDISLEVQLKPSGRDDSCVITKSNFQNLYW 329

Query:   242 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLE 301
             T+TQQLAHHT+NGCNLR GDLLGTGTISGPEP+S GCLLELTWNGQKPLSL+G T+ FLE
Sbjct:   330 TITQQLAHHTVNGCNLRPGDLLGTGTISGPEPDSYGCLLELTWNGQKPLSLNGTTQTFLE 389

Query:   302 DGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 333
             DGD+VTF+G CKG+GY VGFGTC+GKIVPS P
Sbjct:   390 DGDQVTFSGVCKGDGYNVGFGTCTGKIVPSPP 421

GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA

GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

UNIPROTKB\|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53XA7 DKFZp686F13224 "Fumarylacetoacetase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5PKH3	FAAA_BOVIN	3, ., 7, ., 1, ., 2	0.6024	0.9939	0.7899	yes	no
P35505	FAAA_MOUSE	3, ., 7, ., 1, ., 2	0.5830	0.9909	0.7875	yes	no
Q1ZXQ1	FAAA_DICDI	3, ., 7, ., 1, ., 2	0.5641	0.9909	0.7728	yes	no
P25093	FAAA_RAT	3, ., 7, ., 1, ., 2	0.5891	0.9909	0.7875	yes	no
P16930	FAAA_HUMAN	3, ., 7, ., 1, ., 2	0.5951	0.9909	0.7875	yes	no
Q00770	FAAA_EMENI	3, ., 7, ., 1, ., 2	0.5398	0.9819	0.7587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.7.1.2	0.914
3rd Layer	3.7.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		333
PLN02856		424	PLN02856, PLN02856, fumarylacetoacetase	0.0
TIGR01266		415	TIGR01266, fum_ac_acetase, fumarylacetoacetase	1e-177
pfam01557		207	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA	2e-36
COG0179		266	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo	3e-34
pfam09298		101	pfam09298, DUF1969, Domain of unknown function (DU	9e-06
TIGR02303		245	TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate deg	0.004

>gnl\|CDD\|215461 PLN02856, PLN02856, fumarylacetoacetase	Back alignment and domain information

 Score =  648 bits (1673), Expect = 0.0
 Identities = 251/334 (75%), Positives = 278/334 (83%), Gaps = 2/334 (0%)

Query: 2   LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGP 61
           LQ+LLS++E  LRDN+ LR+K+  PM  VEMLLP  IGDYTDFFSS  HA N GT+FRGP
Sbjct: 91  LQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGP 150

Query: 62  ANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMA 120
            NA+  NW HLPI YHGRASSVV SGTDI RPRGQ  P  G+S P FGPS KLDFELEMA
Sbjct: 151 ENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMA 210

Query: 121 AVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWI 180
           A VGPGNELGKPI VNEA DHIFG++LMNDWSARDIQ WEYVPLGPFLGKSF TT+SPWI
Sbjct: 211 AFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWEYVPLGPFLGKSFATTISPWI 270

Query: 181 VTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY 240
           VTLDALEPF CD+P QDP PLPYLAEK  K+YDISLEV IKPAG+  + VV RSNFK+LY
Sbjct: 271 VTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLY 330

Query: 241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKF 299
           WTL QQLAHHT+NGCNLR GDLLG+GTISGPEP SLGCLLELTW G + +SL  G  RKF
Sbjct: 331 WTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKF 390

Query: 300 LEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 333
           LEDGDEV  +G+CKG+GY VGFGTCSGK++P+ P
Sbjct: 391 LEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPALP 424

Length = 424

>gnl\|CDD\|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase	Back alignment and domain information

>gnl\|CDD\|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	Back alignment and domain information

>gnl\|CDD\|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969)	Back alignment and domain information

>gnl\|CDD\|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		333
PLN02856		424	fumarylacetoacetase	100.0
TIGR01266		415	fum_ac_acetase fumarylacetoacetase. This enzyme ca	100.0
KOG2843		420	consensus Fumarylacetoacetase [Carbohydrate transp	100.0
COG0179		266	MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en	100.0
TIGR02303		245	HpaG-C-term 4-hydroxyphenylacetate degradation bif	100.0
KOG1535		217	consensus Predicted fumarylacetoacetate hydralase	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK10691		219	hypothetical protein; Provisional	100.0
PRK15203		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
PRK12764		500	hypothetical protein; Provisional	100.0
TIGR02305		205	HpaG-N-term 4-hydroxyphenylacetate degradation bif	100.0
PF01557		218	FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase	100.0
TIGR03220		255	catechol_dmpE 2-oxopent-4-enoate hydratase. Member	99.91
PRK11342		262	mhpD 2-keto-4-pentenoate hydratase; Provisional	99.88
TIGR02312		267	HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T	99.8
TIGR03218		263	catechol_dmpH 4-oxalocrotonate decarboxylase. Memb	99.61
COG3970		379	Fumarylacetoacetate (FAA) hydrolase family protein	99.6
COG3971		264	2-keto-4-pentenoate hydratase [Secondary metabolit	99.54
PF11010		194	DUF2848: Protein of unknown function (DUF2848); In	98.32
COG3802		333	GguC Uncharacterized protein conserved in bacteria	97.84
PRK10691		219	hypothetical protein; Provisional	82.01

>PLN02856 fumarylacetoacetase	Back alignment and domain information

Probab=100.00  E-value=5.3e-76  Score=582.17  Aligned_cols=332  Identities=76%  Similarity=1.296  Sum_probs=305.1

Q ss_pred             HHHHhccCchhchhhhhhccCCccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCc
Q 019941            2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRAS   81 (333)
Q Consensus         2 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~s   81 (333)
                      ||++|+.....|++...+.....+|+++|+|++|+.+++|++|+++++|+.|+|+.|+++.++.+|+|++.|++|+|+++
T Consensus        91 l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~s  170 (424)
T PLN02856         91 LQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRAS  170 (424)
T ss_pred             HHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCc
Confidence            67888777777777777777789999999999999989999999999999999999888777788999999999999999


Q ss_pred             eeeeCCCeeecCCCCCCC-CCCCCCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhh
Q 019941           82 SVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWE  160 (333)
Q Consensus        82 sl~~~g~~i~~P~~~~~~-~~~~~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~  160 (333)
                      |++++|++|.+|.++..+ .+...|.+.+++.+|||+||++||||.++.|++|++++|++||+|||++||||+||+|.|+
T Consensus       171 Svv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SARDiQ~wE  250 (424)
T PLN02856        171 SVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSARDIQKWE  250 (424)
T ss_pred             eEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhhhhhhhh
Confidence            999999999999986543 2233478888999999999999999987779999999999999999999999999999999


Q ss_pred             hcCCCCccccccCCccCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhc
Q 019941          161 YVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLY  240 (333)
Q Consensus       161 ~~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi  240 (333)
                      +.+++|+++|+|++++||||||.|+++++++..|.++|..+|||.+++..+++|+|+|+++.+.+.||+++|++++++|+
T Consensus       251 ~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~nt~~M~  330 (424)
T PLN02856        251 YVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRSNFKHLY  330 (424)
T ss_pred             cccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcCCHHHcC
Confidence            98899999999999999999999999999888899999999999999999999999988865444488999999999999


Q ss_pred             cCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCcee
Q 019941          241 WTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTV  319 (333)
Q Consensus       241 ~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~  319 (333)
                      |+++|+|+|++|++++|+|||||+||||+|+++.+.||.+|++++|..++++ ++..+.||++||+|+++++|.++|.+|
T Consensus       331 ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~~~g~~i  410 (424)
T PLN02856        331 WTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRV  410 (424)
T ss_pred             CCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEECCCCccE
Confidence            9999999986689999999999999999999999999999999999999998 566799999999999999999999999


Q ss_pred             eeeceeeeEeeCCC
Q 019941          320 GFGTCSGKIVPSTP  333 (333)
Q Consensus       320 g~G~~~~~vv~~~~  333 (333)
                      |||+|+++|++|+|
T Consensus       411 gfG~~~g~v~pa~~  424 (424)
T PLN02856        411 GFGTCSGKVLPALP  424 (424)
T ss_pred             eeeeeeeEEecCCC
Confidence            99999999999976

>TIGR01266 fum_ac_acetase fumarylacetoacetase	Back alignment and domain information

>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit	Back alignment and domain information

>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	Back alignment and domain information

>PRK12764 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit	Back alignment and domain information

>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I	Back alignment and domain information

>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase	Back alignment and domain information

>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional	Back alignment and domain information

>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	Back alignment and domain information

>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase	Back alignment and domain information

>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]	Back alignment and domain information

>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function	Back alignment and domain information

>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PRK10691 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		333
1qco_A		423	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-114
1qqj_A		419	Crystal Structure Of Mouse Fumarylacetoacetate Hydr		1e-114
1hyo_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-114
1qcn_A		421	Crystal Structure Of Fumarylacetoacetate Hydrolase		1e-110

>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423

Back alignment and structure

Iteration: 1

Score = 409 bits (1050), Expect = e-114, Method: Compositional matrix adjust. Identities = 189/331 (57%), Positives = 236/331 (71%), Gaps = 1/331 (0%) Query: 2 LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGP 61 LQ LLS+++A LRD+ LRQ++ M LP IGDYTDF+SS HA N G +FRG Sbjct: 87 LQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGK 146 Query: 62 ANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAA 121 NA+ NW HLP+ YHGRASS+V+SGT I RP GQ + LD ELEMA Sbjct: 147 ENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF 206 Query: 122 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 181 VGPGN G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V Sbjct: 207 FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVV 266 Query: 182 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 241 +DAL PF +PKQDP+PLPYL +DI+L V +K G + + RSNFK++YW Sbjct: 267 PMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYW 326 Query: 242 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFL 300 T+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + + G TR FL Sbjct: 327 TMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFL 386 Query: 301 EDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331 DGDEV TG C+G+GY VGFG C+GK++P+ Sbjct: 387 LDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417

PyMOL of 1qco

>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419

Back alignment and structure

>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421

Back alignment and structure

>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		333
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	1e-149
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	4e-34
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	2e-19
1wzo_A		246	HPCE; structural genomics, riken structural genomi	8e-15
3rr6_A		265	Putative uncharacterized protein; structural genom	9e-15
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	2e-14
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	7e-13
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	4e-14
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	5e-14
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	1e-13
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	2e-13
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	2e-13
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	6e-11

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421	Back alignment and structure

 Score =  424 bits (1091), Expect = e-149
 Identities = 193/331 (58%), Positives = 242/331 (73%), Gaps = 1/331 (0%)

Query: 2   LQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGP 61
           LQ LLS+++A LRD+  LRQ++        M LP  IGDYTDF+SS  HA N G +FRG 
Sbjct: 87  LQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGK 146

Query: 62  ANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAA 121
            NA+  NW HLP+ YHGRASS+V+SGT I RP GQ  P  + PP +G  + LD ELEMA 
Sbjct: 147 ENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF 206

Query: 122 VVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIV 181
            VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ WEYVPLGPFLGKSFGTT+SPW+V
Sbjct: 207 FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVV 266

Query: 182 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYW 241
            +DAL PF   +PKQDP+PLPYL       +DI+L V +K  G   +  + RSNFK++YW
Sbjct: 267 PMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYW 326

Query: 242 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFL 300
           T+ QQL HH++NGCNLR GDLL +GTISG +PES G +LEL+W G K + +  G TR FL
Sbjct: 327 TMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFL 386

Query: 301 EDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331
            DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 387 LDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		333
1hyo_A		421	Fumarylacetoacetate hydrolase; beta-sandwich roll;	100.0
3lzk_A		359	Fumarylacetoacetate hydrolase family protein; stru	100.0
3r6o_A		329	2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg	100.0
4dbf_A		288	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa	100.0
3rr6_A		265	Putative uncharacterized protein; structural genom	100.0
3l53_A		224	Putative fumarylacetoacetate isomerase/hydrolase;	100.0
2dfu_A		264	Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;	100.0
1wzo_A		246	HPCE; structural genomics, riken structural genomi	100.0
3s52_A		221	Putative fumarylacetoacetate hydrolase family Pro;	100.0
1saw_A		225	Hypothetical protein FLJ36880; structural genomics	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
2q18_X		293	2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami	100.0
1nkq_A		259	Hypothetical 28.8 kDa protein in PSD1-SKO1 interge	100.0
1gtt_A		429	4-hydroxyphenylacetate degradation bifunctional is	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	100.0
2wqt_A		270	2-keto-4-pentenoate hydratase; lyase, dodecahedral	100.0
2eb4_A		267	2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60	92.03

>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A	Back alignment and structure

Probab=100.00  E-value=2.2e-72  Score=558.91  Aligned_cols=310  Identities=58%  Similarity=1.118  Sum_probs=280.2

Q ss_pred             ccccCCcEEeCCcccCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCC
Q 019941           24 LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS  103 (333)
Q Consensus        24 ~~~~~~v~ll~Pv~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~  103 (333)
                      .+++++|+|++|+.+++|++|+++++|+.|+++.|+++.++.+|+|++.|++|+|+++|++++|++|.+|.+++.+.+..
T Consensus       109 ~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~  188 (421)
T 1hyo_A          109 FTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSK  188 (421)
T ss_dssp             EEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTS
T ss_pred             cccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcCCCCEEEEcccceEEcCCCeEECCCCcccCcccc
Confidence            58999999999999999999999999999999887776666789999999999999999999999999998765444444


Q ss_pred             CCCCCCCCCceeeEEEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCccCCccccc
Q 019941          104 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTL  183 (333)
Q Consensus       104 ~~~~~~~~~ld~E~ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~lGP~ivt~  183 (333)
                      .|.+..++.+|||+||||||||.++.|+++++++|++||+||+++||||+||+|.|++.+++|+++|+|++++|||+||+
T Consensus       189 ~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaRdiQ~~e~~plg~~~aK~f~t~iGPwivt~  268 (421)
T 1hyo_A          189 PPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPM  268 (421)
T ss_dssp             CCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEH
T ss_pred             ccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHHhhhhhhcccCCCccccCcCCCCCCeecch
Confidence            46666789999999999999999777899999999999999999999999999999988889999999999999999999


Q ss_pred             cccCCccCCCCCCCCCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEE
Q 019941          184 DALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLL  263 (333)
Q Consensus       184 del~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI  263 (333)
                      |+++++|...|+++|..+|||.++++..++|.+++++|.+...||+++|++++++|+|++.++|+|++|++++|+|||||
T Consensus       269 d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI  348 (421)
T 1hyo_A          269 DALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLL  348 (421)
T ss_dssp             HHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEE
T ss_pred             hhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEE
Confidence            99999998889999999999998888877777776664222223999999999999999999999996689999999999


Q ss_pred             EcCCCCCCccCCCCcEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeCCC
Q 019941          264 GTGTISGPEPESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP  333 (333)
Q Consensus       264 ~TGTp~Gv~~~~~Gd~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~~  333 (333)
                      +||||+|++..+.||.+|++++|++++++ .++++.|||+||+|+++++|..||++||||+|+|+|+++++
T Consensus       349 ~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~~~g~~igfG~~~~~V~~a~~  419 (421)
T 1hyo_A          349 ASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPALS  419 (421)
T ss_dssp             ECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC-
T ss_pred             EcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEECCCCceeeeeeeEEEEecCCC
Confidence            99999999999999999999999999988 56789999999999999998889999999999999999853

PyMOL of 1hyo

>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}	Back alignment and structure

>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}	Back alignment and structure

>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A	Back alignment and structure

>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A	Back alignment and structure

>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}	Back alignment and structure

>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}	Back alignment and structure

>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A	Back alignment and structure

>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A	Back alignment and structure

>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1	Back alignment and structure

>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A	Back alignment and structure

>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		333
d1hyoa2		298	d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas	1e-116
d1nkqa_		257	d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker	2e-15
d1sawa_		217	d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom	3e-07
d1hyoa1		118	b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase,	1e-06
d1gtta2		216	d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra	1e-04

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  335 bits (860), Expect = e-116
 Identities = 178/295 (60%), Positives = 221/295 (74%), Gaps = 1/295 (0%)

Query: 38  IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 97
           IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP GQ 
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62

Query: 98  APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 157
            P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63  RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122

Query: 158 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 217
            WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L 
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182

Query: 218 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 277
           V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242

Query: 278 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 331
            +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297

PyMOL of d1hyoa2

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure

>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 118	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		333
d1hyoa2		298	Fumarylacetoacetate hydrolase, FAH, C-terminal dom	100.0
d1nr9a_		221	Putative isomerase YcgM {Escherichia coli [TaxId:	100.0
d1gtta1		213	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1sawa_		217	FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax	100.0
d1gtta2		216	4-hydroxyphenylacetate degradation bifunctional is	100.0
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	100.0
d1sv6a_		261	2-keto-4-pentenoate hydratase MhpD {Escherichia co	99.8
d1nkqa_		257	Hypothetical protein Ynl168c {Baker's yeast (Sacch	84.46

>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.5e-74  Score=546.44  Aligned_cols=295  Identities=60%  Similarity=1.157  Sum_probs=273.5

Q ss_pred             cCCcceEEecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCeeecCCCCCCCCCCCCCCCCCCCCceeeE
Q 019941           38 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL  117 (333)
Q Consensus        38 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~p~~~~~P~~f~k~~ssl~~~g~~i~~P~~~~~~~~~~~~~~~~~~~ld~E~  117 (333)
                      .++|++|+|++||+++++++|+++.++.+|+|++.|++|+|++||++++|++|.+|.+++.+.....|.+..++++|||+
T Consensus         3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~   82 (298)
T d1hyoa2           3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMEL   82 (298)
T ss_dssp             CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBE
T ss_pred             ccccceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeec
Confidence            35799999999999999999888877889999999999999999999999999999876544444456777799999999


Q ss_pred             EEEEEEcCCCCCCCCCCHHHHhhceeEEEEEeecchhhhhhhhhcCCCCccccccCCccCCccccccccCCccCCCCCCC
Q 019941          118 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQD  197 (333)
Q Consensus       118 ELavVIGk~~~~g~~v~~eeA~~~I~Gytl~ND~SaRd~q~~~~~~~~~~~aK~~dt~lGP~ivt~del~~~~~~~~~~~  197 (333)
                      ||++||||++..|+++++++|++||+|||++||||+||+|..++.+++|+++|+|++++|||+||++++.++....+.++
T Consensus        83 EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~d  162 (298)
T d1hyoa2          83 EMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQD  162 (298)
T ss_dssp             EEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCS
T ss_pred             eEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccchhcCcccccccccC
Confidence            99999999876799999999999999999999999999999988788999999999999999999999998887777888


Q ss_pred             CCCCccccccCCceeeEEEEEEeeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCC
Q 019941          198 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG  277 (333)
Q Consensus       198 ~~~~~~~~~~~~~~l~l~l~V~~~~~~~~NGe~~q~~~t~~mi~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gv~~~~~G  277 (333)
                      |..++++.++++...++.+++++|++.++||+++|++++++|+|++.|+|+|++|+++||+|||||+||||+|+++++.|
T Consensus       163 p~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~G  242 (298)
T d1hyoa2         163 PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG  242 (298)
T ss_dssp             SCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCC
T ss_pred             ccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCC
Confidence            88888999999999999999999999999999999999999999999999997689999999999999999999999999


Q ss_pred             cEEEEEecCccceec-CCCCCCCCCCCCEEEEEEEEcCCCceeeeeceeeeEeeCC
Q 019941          278 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  332 (333)
Q Consensus       278 d~~e~~~~g~g~l~~-~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~vv~~~  332 (333)
                      |.+|++++|+.++++ .++++.||++||+|++|++|+.+|.++|||+|+|+||+|.
T Consensus       243 d~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~  298 (298)
T d1hyoa2         243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  298 (298)
T ss_dssp             BHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             cEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence            999999999999998 5667789999999999999999999999999999999984

PyMOL of d1hyoa2

>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure