Citrus Sinensis ID: 019943

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---

MDMLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYEEADNESDGELTMWDMEQRILCA

ccEEEEEEEEEEccccccccEEcccccEEEEEEEccEEEEEEccEEEEEccEEEEEccEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccEEEEEEcccccEEEEEccccccEEEccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccEEEccccccccccHHHHHHHHHcccccccEEEcccEEEEEEccccccccHHHHHccccccHHHHcHHcHHcccccccccccccccccccccccccccc

cccEEEEEEEEEcccccccEEEcccccEEEEcccccEEEEEEcEEEEEcccEEEEEcccEEEEEEcccccccEEEEEccccccccccccccccccccccccccccEEEEEccccccEEEEEEEccEEEEEEcccccccEEEEcccccccEEcHHHcccccEEEEccccccEEEEEEccccccccEEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccHccccccccccHHHHHHHHHcHHccccHHHcccHEEEEcccccccccHHHHHcHHHcHHHHHHHHHHHHHccccccccccccccccccHHHHHHcc

mdmlftcnrytanksmdncafcnadgdflvvpqkgrlwiatecgklevspgeiavlpqgfrfavslpdgpsrgyIAEIFgthfqlpdlgpiganglaaprdflvptawfeegsrlGYTIVQKFGGelftarqdfspfnvvawhgnyvpykydlskfcpfntvlvdhgdpsintvltaptdkpgvalldfvifpprwlvaehtfrppyyhrncmsefmglirggyeakadgflpggaslhscmtphgpdtktyEATIargseagpykitDTMAFMFEsclipricpwalespfmdhdyyrcwiglrshfsyeeadnesdgelTMWDMEQRILCA

***LFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMT*******TYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE**********************

**MLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEAT******AGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHF**************MWDMEQRILCA

*DMLFTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSY**********LTMWDMEQRILCA

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		333	2.2.26 [Sep-21-2011]
Q9ZRA2		461	Homogentisate 1,2-dioxyge	yes	no	0.933	0.674	0.819	1e-155
Q5VRH4		470	Homogentisate 1,2-dioxyge	yes	no	0.942	0.668	0.799	1e-150
Q54QI4		432	Homogentisate 1,2-dioxyge	yes	no	0.882	0.680	0.635	1e-105
O09173		445	Homogentisate 1,2-dioxyge	yes	no	0.888	0.665	0.605	1e-102
Q93099		445	Homogentisate 1,2-dioxyge	yes	no	0.891	0.667	0.603	1e-101
Q5RF05		445	Homogentisate 1,2-dioxyge	yes	no	0.891	0.667	0.600	1e-101
Q9VKJ0		439	Homogentisate 1,2-dioxyge	yes	no	0.891	0.676	0.592	1e-99
Q9Y041		437	Homogentisate 1,2-dioxyge	yes	no	0.900	0.686	0.594	6e-99
Q1D8L9		437	Homogentisate 1,2-dioxyge	yes	no	0.897	0.684	0.576	1e-97
Q9X4G0		432	Homogentisate 1,2-dioxyge	yes	no	0.891	0.687	0.581	4e-96

>sp\|Q9ZRA2\|HGD_ARATH Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2	Back alignment and function desciption

 Score =  546 bits (1406), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 255/311 (81%), Positives = 275/311 (88%)

Query: 5   FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAV 64
           F  + Y AN  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEIAV+PQGFRF++
Sbjct: 137 FAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGFRFSI 196

Query: 65  SLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFG 124
            LPDG SRGY+AEI+G HFQLPDLGPIGANGLAA RDFL PTAWFE+G R  YTIVQKFG
Sbjct: 197 DLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGLRPEYTIVQKFG 256

Query: 125 GELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGV 184
           GELFTA+QDFSPFNVVAWHGNYVPYKYDL KFCP+NTVL+DHGDPSINTVLTAPTDKPGV
Sbjct: 257 GELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINTVLTAPTDKPGV 316

Query: 185 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244
           ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTP
Sbjct: 317 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHSCMTP 376

Query: 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 304
           HGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYY+CWIGL
Sbjct: 377 HGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGL 436

Query: 305 RSHFSYEEADN 315
           +SHFS    D 
Sbjct: 437 KSHFSRISLDK 447

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5

>sp\|Q5VRH4\|HGD_ORYSJ Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1	Back alignment and function description

>sp\|Q54QI4\|HGD_DICDI Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1	Back alignment and function description

>sp\|O09173\|HGD_MOUSE Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2	Back alignment and function description

>sp\|Q93099\|HGD_HUMAN Homogentisate 1,2-dioxygenase OS=Homo sapiens GN=HGD PE=1 SV=2	Back alignment and function description

>sp\|Q5RF05\|HGD_PONAB Homogentisate 1,2-dioxygenase OS=Pongo abelii GN=HGD PE=2 SV=1	Back alignment and function description

>sp\|Q9VKJ0\|HGD_DROME Homogentisate 1,2-dioxygenase OS=Drosophila melanogaster GN=hgo PE=1 SV=3	Back alignment and function description

>sp\|Q9Y041\|HGD_CAEEL Homogentisate 1,2-dioxygenase OS=Caenorhabditis elegans GN=hgo-1 PE=1 SV=2	Back alignment and function description

>sp\|Q1D8L9\|HGD_MYXXD Homogentisate 1,2-dioxygenase OS=Myxococcus xanthus (strain DK 1622) GN=hmgA PE=3 SV=1	Back alignment and function description

>sp\|Q9X4G0\|HGD_PSEAE Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hmgA PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
225461591		463	PREDICTED: homogentisate 1,2-dioxygenase	0.942	0.678	0.866	1e-164
8131905		477	homogentisate 1,2-dioxygenase [Solanum l	0.915	0.639	0.868	1e-162
255554698		457	homogentisate 1,2-dioxygenase, putative	0.942	0.687	0.860	1e-162
224056539		464	predicted protein [Populus trichocarpa]	0.945	0.678	0.850	1e-160
449438877		471	PREDICTED: homogentisate 1,2-dioxygenase	0.969	0.685	0.824	1e-160
356517076		455	PREDICTED: homogentisate 1,2-dioxygenase	0.939	0.687	0.840	1e-158
356543235		455	PREDICTED: homogentisate 1,2-dioxygenase	0.939	0.687	0.840	1e-158
297792833		461	homogentisate 1,2-dioxygenase [Arabidops	0.915	0.661	0.845	1e-155
21594040		461	homogentisate 1,2-dioxygenase [Arabidops	0.933	0.674	0.829	1e-154
15239545		461	homogentisate 1,2-dioxygenase [Arabidops	0.933	0.674	0.819	1e-153

>gi\|225461591\|ref\|XP_002285298.1\| PREDICTED: homogentisate 1,2-dioxygenase [Vitis vinifera] gi\|302142933\|emb\|CBI20228.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/314 (86%), Positives = 290/314 (92%)

Query: 5   FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAV 64
           +  + YTANKSMDNCAFCNADGDFL+VPQKGRL I TECGKL+VSPGEI VLP GFRF V
Sbjct: 144 YAIHMYTANKSMDNCAFCNADGDFLIVPQKGRLSITTECGKLQVSPGEIVVLPHGFRFVV 203

Query: 65  SLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFG 124
            LPDGPSRGY+AEIFG HFQLPDLGPIGANGLAA RDFLVP AW+EE SR GYTIVQKFG
Sbjct: 204 DLPDGPSRGYVAEIFGAHFQLPDLGPIGANGLAASRDFLVPVAWYEECSRPGYTIVQKFG 263

Query: 125 GELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGV 184
           GELFTA+QDFSPFNVVAWHGNYVPYKYDLSKFCP NTVL DH DPSINTVLTAPTDKPGV
Sbjct: 264 GELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLKDHADPSINTVLTAPTDKPGV 323

Query: 185 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244
           ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI GGYEAKADGFLPGGASLHSCMTP
Sbjct: 324 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHSCMTP 383

Query: 245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 304
           HGPDTKT+EAT+A G +AGP++IT+TMAFMFESCLIPRICPWAL+SP +DHDYY+CW+GL
Sbjct: 384 HGPDTKTFEATVAHGKDAGPFRITNTMAFMFESCLIPRICPWALDSPSIDHDYYQCWVGL 443

Query: 305 RSHFSYEEADNESD 318
           RSHFS EEA +ES 
Sbjct: 444 RSHFSREEASDESQ 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|8131905\|gb\|AAF73132.1\|AF149017_1 homogentisate 1,2-dioxygenase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|255554698\|ref\|XP_002518387.1\| homogentisate 1,2-dioxygenase, putative [Ricinus communis] gi\|223542482\|gb\|EEF44023.1\| homogentisate 1,2-dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224056539\|ref\|XP_002298900.1\| predicted protein [Populus trichocarpa] gi\|222846158\|gb\|EEE83705.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449438877\|ref\|XP_004137214.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Cucumis sativus] gi\|449524824\|ref\|XP_004169421.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356517076\|ref\|XP_003527216.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356543235\|ref\|XP_003540068.1\| PREDICTED: homogentisate 1,2-dioxygenase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297792833\|ref\|XP_002864301.1\| homogentisate 1,2-dioxygenase [Arabidopsis lyrata subsp. lyrata] gi\|297310136\|gb\|EFH40560.1\| homogentisate 1,2-dioxygenase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|21594040\|gb\|AAM65958.1\| homogentisate 1,2-dioxygenase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|15239545|ref|NP_200219.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|30696407|ref|NP_851187.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|13432134|sp|Q9ZRA2.2|HGD_ARATH RecName: Full=Homogentisate 1,2-dioxygenase; AltName: Full=Homogentisate oxygenase; AltName: Full=Homogentisic acid oxidase; AltName: Full=Homogentisicase gi|7108615|gb|AAF36499.1|AF130845_1 homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|8809579|dbj|BAA97130.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|22655252|gb|AAM98216.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|33942055|gb|AAQ55280.1| At5g54080 [Arabidopsis thaliana] gi|332009064|gb|AED96447.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana] gi|332009065|gb|AED96448.1| homogentisate 1,2-dioxygenase [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		333
TAIR\|locus:2166567		461	HGO "AT5G54080" [Arabidopsis t	0.915	0.661	0.832	2.2e-146
DICTYBASE\|DDB_G0283765		432	hgd "homogentisic acid oxidase	0.882	0.680	0.635	2.1e-100
MGI\|MGI:96078		445	Hgd "homogentisate 1, 2-dioxyg	0.888	0.665	0.605	8.2e-99
ZFIN\|ZDB-GENE-020802-5		443	hgd "homogentisate 1,2-dioxyge	0.891	0.670	0.603	1e-98
UNIPROTKB\|Q93099		445	HGD "Homogentisate 1,2-dioxyge	0.891	0.667	0.603	7.4e-98
UNIPROTKB\|G3V6C2		445	Hgd "RCG52860, isoform CRA_b"	0.891	0.667	0.594	2.5e-97
UNIPROTKB\|I3LTZ3		445	HGD "Uncharacterized protein"	0.891	0.667	0.603	3.2e-97
UNIPROTKB\|F1Q313		445	HGD "Uncharacterized protein"	0.891	0.667	0.597	4.1e-97
UNIPROTKB\|E1C3Y2		434	HGD "Uncharacterized protein"	0.894	0.686	0.593	6.6e-97
RGD\|1308757		445	Hgd "homogentisate 1, 2-dioxyg	0.891	0.667	0.590	8.4e-97

TAIR\|locus:2166567 HGO "AT5G54080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
 Identities = 254/305 (83%), Positives = 274/305 (89%)

Query:     5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAV 64
             F  + Y AN  M + AFCNADGDFL+VPQ GRLWI TECG+L V+PGEIAV+PQGFRF++
Sbjct:   137 FAIHMYVANTGMKDSAFCNADGDFLLVPQTGRLWIETECGRLLVTPGEIAVIPQGFRFSI 196

Query:    65 SLPDGPSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFG 124
              LPDG SRGY+AEI+G HFQLPDLGPIGANGLAA RDFL PTAWFE+G R  YTIVQKFG
Sbjct:   197 DLPDGKSRGYVAEIYGAHFQLPDLGPIGANGLAASRDFLAPTAWFEDGLRPEYTIVQKFG 256

Query:   125 GELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGV 184
             GELFTA+QDFSPFNVVAWHGNYVPYKYDL KFCP+NTVL+DHGDPSINTVLTAPTDKPGV
Sbjct:   257 GELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLLDHGDPSINTVLTAPTDKPGV 316

Query:   185 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP 244
             ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTP
Sbjct:   317 ALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGAYEAKADGFLPGGASLHSCMTP 376

Query:   245 HGPDTKTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGL 304
             HGPDT TYEATIAR +   P K+T TMAFMFES LIPR+C WALESPF+DHDYY+CWIGL
Sbjct:   377 HGPDTTTYEATIARVNAMAPSKLTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGL 436

Query:   305 RSHFS 309
             +SHFS
Sbjct:   437 KSHFS 441

GO:0004411 "homogentisate 1,2-dioxygenase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006559 "L-phenylalanine catabolic process" evidence=ISS

GO:0006572 "tyrosine catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:1902000 "homogentisate catabolic process" evidence=IDA

DICTYBASE\|DDB_G0283765 hgd "homogentisic acid oxidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:96078 Hgd "homogentisate 1, 2-dioxygenase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020802-5 hgd "homogentisate 1,2-dioxygenase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q93099 HGD "Homogentisate 1,2-dioxygenase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6C2 Hgd "RCG52860, isoform CRA_b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LTZ3 HGD "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q313 HGD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C3Y2 HGD "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1308757 Hgd "homogentisate 1, 2-dioxygenase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q88E47	HGD_PSEPK	1, ., 1, 3, ., 1, 1, ., 5	0.58	0.8888	0.6836	yes	no
Q5VRH4	HGD_ORYSJ	1, ., 1, 3, ., 1, 1, ., 5	0.7993	0.9429	0.6680	yes	no
B7VA96	HGD_PSEA8	1, ., 1, 3, ., 1, 1, ., 5	0.5813	0.8918	0.6875	yes	no
B0T816	HGD_CAUSK	1, ., 1, 3, ., 1, 1, ., 5	0.5533	0.8888	0.6932	yes	no
Q54QI4	HGD_DICDI	1, ., 1, 3, ., 1, 1, ., 5	0.6354	0.8828	0.6805	yes	no
Q4ZR64	HGD_PSEU2	1, ., 1, 3, ., 1, 1, ., 5	0.5728	0.8948	0.6866	yes	no
Q63RD3	HGD_BURPS	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
B1YTZ1	HGD_BURA4	1, ., 1, 3, ., 1, 1, ., 5	0.5577	0.9039	0.6779	yes	no
Q1D8L9	HGD_MYXXD	1, ., 1, 3, ., 1, 1, ., 5	0.5761	0.8978	0.6842	yes	no
A4JBW6	HGD_BURVG	1, ., 1, 3, ., 1, 1, ., 5	0.5511	0.9039	0.6779	yes	no
Q02LF6	HGD_PSEAB	1, ., 1, 3, ., 1, 1, ., 5	0.5780	0.8918	0.6875	yes	no
A0K4Z6	HGD_BURCH	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6779	yes	no
Q9ZRA2	HGD_ARATH	1, ., 1, 3, ., 1, 1, ., 5	0.8199	0.9339	0.6746	yes	no
Q9Y041	HGD_CAEEL	1, ., 1, 3, ., 1, 1, ., 5	0.5947	0.9009	0.6864	yes	no
Q9X4G0	HGD_PSEAE	1, ., 1, 3, ., 1, 1, ., 5	0.5813	0.8918	0.6875	yes	no
Q4UZI9	HGD_XANC8	1, ., 1, 3, ., 1, 1, ., 5	0.5548	0.8918	0.6527	yes	no
Q46UA4	HGD_CUPPJ	1, ., 1, 3, ., 1, 1, ., 5	0.5548	0.8918	0.6765	yes	no
A6V6F5	HGD_PSEA7	1, ., 1, 3, ., 1, 1, ., 5	0.5780	0.8918	0.6875	yes	no
Q3JPA3	HGD_BURP1	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
Q0K0L8	HGD_CUPNH	1, ., 1, 3, ., 1, 1, ., 5	0.5614	0.8918	0.6765	yes	no
Q1BYQ6	HGD_BURCA	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6779	yes	no
B8H072	HGD_CAUCN	1, ., 1, 3, ., 1, 1, ., 5	0.5728	0.8738	0.6847	yes	no
Q62I34	HGD_BURMA	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
Q87Z79	HGD_PSESM	1, ., 1, 3, ., 1, 1, ., 5	0.5657	0.9009	0.6912	yes	no
A2S9M1	HGD_BURM9	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
Q48GS7	HGD_PSE14	1, ., 1, 3, ., 1, 1, ., 5	0.5662	0.8948	0.6850	yes	no
Q2SYQ6	HGD_BURTA	1, ., 1, 3, ., 1, 1, ., 5	0.5577	0.9039	0.6688	yes	no
B2SM18	HGD_XANOP	1, ., 1, 3, ., 1, 1, ., 5	0.5357	0.9189	0.6938	yes	no
Q9A5B8	HGD_CAUCR	1, ., 1, 3, ., 1, 1, ., 5	0.5728	0.8738	0.6847	yes	no
B4ECX5	HGD_BURCJ	1, ., 1, 3, ., 1, 1, ., 5	0.5493	0.9009	0.6756	yes	no
A3NYN0	HGD_BURP0	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
Q5RF05	HGD_PONAB	1, ., 1, 3, ., 1, 1, ., 5	0.6006	0.8918	0.6674	yes	no
B2UJ73	HGD_RALPJ	1, ., 1, 3, ., 1, 1, ., 5	0.5551	0.8918	0.6629	yes	no
A5W8Z1	HGD_PSEP1	1, ., 1, 3, ., 1, 1, ., 5	0.58	0.8888	0.6836	yes	no
Q1I500	HGD_PSEE4	1, ., 1, 3, ., 1, 1, ., 5	0.5766	0.8888	0.6836	yes	no
Q8XRZ0	HGD_RALSO	1, ., 1, 3, ., 1, 1, ., 5	0.5666	0.8888	0.6607	yes	no
A3MMH2	HGD_BURM7	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
O09173	HGD_MOUSE	1, ., 1, 3, ., 1, 1, ., 5	0.6052	0.8888	0.6651	yes	no
Q93099	HGD_HUMAN	1, ., 1, 3, ., 1, 1, ., 5	0.6039	0.8918	0.6674	yes	no
Q4KI35	HGD_PSEF5	1, ., 1, 3, ., 1, 1, ., 5	0.5866	0.8888	0.6820	yes	no
Q9VKJ0	HGD_DROME	1, ., 1, 3, ., 1, 1, ., 5	0.5927	0.8918	0.6765	yes	no
Q39J54	HGD_BURS3	1, ., 1, 3, ., 1, 1, ., 5	0.5478	0.9039	0.6779	yes	no
Q0BHW3	HGD_BURCM	1, ., 1, 3, ., 1, 1, ., 5	0.5577	0.9039	0.6779	yes	no
Q3KHV3	HGD_PSEPF	1, ., 1, 3, ., 1, 1, ., 5	0.5819	0.8858	0.6844	yes	no
B0KGU6	HGD_PSEPG	1, ., 1, 3, ., 1, 1, ., 5	0.5766	0.8888	0.6836	yes	no
A9AFM6	HGD_BURM1	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6779	yes	no
A1V1U3	HGD_BURMS	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6688	yes	no
Q8PDA2	HGD_XANCP	1, ., 1, 3, ., 1, 1, ., 5	0.5548	0.8918	0.6527	yes	no
B1JWJ3	HGD_BURCC	1, ., 1, 3, ., 1, 1, ., 5	0.5544	0.9039	0.6779	yes	no
B1J390	HGD_PSEPW	1, ., 1, 3, ., 1, 1, ., 5	0.5866	0.8888	0.6836	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.11.5	0.946
3rd Layer	1.13.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		333
PLN02658		435	PLN02658, PLN02658, homogentisate 1,2-dioxygenase	0.0
PRK05341		438	PRK05341, PRK05341, homogentisate 1,2-dioxygenase;	0.0
pfam04209		422	pfam04209, HgmA, homogentisate 1,2-dioxygenase	1e-179
TIGR01015		429	TIGR01015, hmgA, homogentisate 1,2-dioxygenase	1e-165
COG3508		427	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Seco	1e-123

>gnl\|CDD\|215355 PLN02658, PLN02658, homogentisate 1,2-dioxygenase	Back alignment and domain information

 Score =  642 bits (1657), Expect = 0.0
 Identities = 261/305 (85%), Positives = 276/305 (90%)

Query: 10  YTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 69
           Y ANKSMD+CAFCNADGDFL+VPQ+GRLWI TE GKL+VSPGEI V+P+GFRFAV LPDG
Sbjct: 131 YVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLPDG 190

Query: 70  PSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFT 129
           PSRGY+ EIFG HFQLPDLGPIGANGLA PRDFL P AWFE+GSR GYTIVQKFGGELFT
Sbjct: 191 PSRGYVLEIFGGHFQLPDLGPIGANGLANPRDFLHPVAWFEDGSRPGYTIVQKFGGELFT 250

Query: 130 ARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDF 189
           A+QDFSPFNVVAWHGNYVPYKYDLSKFCP NTVL DH DPSINTVLTAPTDKPGVAL DF
Sbjct: 251 AKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLFDHADPSINTVLTAPTDKPGVALADF 310

Query: 190 VIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDT 249
           VIFPPRWLVAEHTFRPPYYHRNCMSEFMGLI G YEAKADGFLPGGASLHSCMTPHGPDT
Sbjct: 311 VIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLHSCMTPHGPDT 370

Query: 250 KTYEATIARGSEAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFS 309
            TYEATIAR     P K+T T+AFMFES LIPR+CPWALESPF D DYY+CWIGL+SHFS
Sbjct: 371 ATYEATIARPCADAPSKLTGTLAFMFESSLIPRVCPWALESPFRDRDYYQCWIGLKSHFS 430

Query: 310 YEEAD 314
            E+AD
Sbjct: 431 REDAD 435

Length = 435

>gnl\|CDD\|235421 PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	Back alignment and domain information

>gnl\|CDD\|217966 pfam04209, HgmA, homogentisate 1,2-dioxygenase	Back alignment and domain information

>gnl\|CDD\|233233 TIGR01015, hmgA, homogentisate 1,2-dioxygenase	Back alignment and domain information

>gnl\|CDD\|226039 COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		333
PLN02658		435	homogentisate 1,2-dioxygenase	100.0
PRK05341		438	homogentisate 1,2-dioxygenase; Provisional	100.0
TIGR01015		429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	100.0
PF04209		424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	100.0
KOG1417		446	consensus Homogentisate 1,2-dioxygenase [Amino aci	100.0
COG3508		427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	100.0
TIGR03037		159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.68
PRK13264		177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.51
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.46
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	98.28
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.26
COG1917		131	Uncharacterized conserved protein, contains double	97.81
smart00835		146	Cupin_1 Cupin. This family represents the conserve	97.6
PF05899		74	Cupin_3: Protein of unknown function (DUF861); Int	97.59
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	97.55
PF01050		151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	97.44
PF02311		136	AraC_binding: AraC-like ligand binding domain; Int	97.38
PF00190		144	Cupin_1: Cupin; InterPro: IPR006045 This family re	97.25
PRK13290		125	ectC L-ectoine synthase; Reviewed	97.23
PRK04190		191	glucose-6-phosphate isomerase; Provisional	97.2
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	97.19
PRK15457		233	ethanolamine utilization protein EutQ; Provisional	97.18
PRK11171		266	hypothetical protein; Provisional	97.15
PF03079		157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.11
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	97.1
TIGR01479		468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	97.08
PF06249		152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.03
COG4766		176	EutQ Ethanolamine utilization protein [Amino acid	96.99
PRK10296		278	DNA-binding transcriptional regulator ChbR; Provis	96.7
PRK15460		478	cpsB mannose-1-phosphate guanyltransferase; Provis	96.63
PF06052		151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.62
COG3837		161	Uncharacterized conserved protein, contains double	96.38
PF12973		91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	96.35
COG3450		116	Predicted enzyme of the cupin superfamily [General	96.31
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	96.22
COG4297		163	Uncharacterized protein containing double-stranded	96.01
COG2140		209	Thermophilic glucose-6-phosphate isomerase and rel	95.57
PRK11171		266	hypothetical protein; Provisional	95.48
PF11699		85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	95.21
PF12852		186	Cupin_6: Cupin	95.04
TIGR02451		215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	95.04
COG4101		142	Predicted mannose-6-phosphate isomerase [Carbohydr	94.94
TIGR02297		287	HpaA 4-hydroxyphenylacetate catabolism regulatory	94.73
PRK13502		282	transcriptional activator RhaR; Provisional	94.71
PRK13500		312	transcriptional activator RhaR; Provisional	94.45
COG1791		181	Uncharacterized conserved protein, contains double	94.23
PRK13501		290	transcriptional activator RhaR; Provisional	94.1
PRK13503		278	transcriptional activator RhaS; Provisional	93.7
PLN00212		493	glutelin; Provisional	93.63
KOG2107		179	consensus Uncharacterized conserved protein, conta	93.12
PRK10371		302	DNA-binding transcriptional regulator MelR; Provis	93.07
PF05523		131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	92.89
PLN00212		493	glutelin; Provisional	92.48
COG3257		264	GlxB Uncharacterized protein, possibly involved in	92.46
PF02041		167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	92.06
TIGR00218		302	manA mannose-6-phosphate isomerase, class I. The n	92.01
PF14525		172	AraC_binding_2: AraC-binding-like domain	91.36
PRK10572		290	DNA-binding transcriptional regulator AraC; Provis	90.73
PRK09685		302	DNA-binding transcriptional activator FeaR; Provis	90.62
PF06560		182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	90.28
TIGR02272		335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	89.94
PF04962		261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	89.1
PF09313		82	DUF1971: Domain of unknown function (DUF1971); Int	88.79
PRK00924		276	5-keto-4-deoxyuronate isomerase; Provisional	88.74
KOG2757		411	consensus Mannose-6-phosphate isomerase [Carbohydr	88.49
PRK15131		389	mannose-6-phosphate isomerase; Provisional	85.24
COG1482		312	ManA Phosphomannose isomerase [Carbohydrate transp	84.96
PF05726		104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	84.78
PRK15186		291	AraC family transcriptional regulator; Provisional	84.32
PLN02288		394	mannose-6-phosphate isomerase	83.01
PF07385		225	DUF1498: Protein of unknown function (DUF1498); In	82.91
PF06719		155	AraC_N: AraC-type transcriptional regulator N-term	82.83
PRK13264		177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	80.21

>PLN02658 homogentisate 1,2-dioxygenase	Back alignment and domain information

Probab=100.00  E-value=3.1e-124  Score=926.74  Aligned_cols=305  Identities=85%  Similarity=1.499  Sum_probs=297.7

Q ss_pred             EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943            5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ   84 (333)
Q Consensus         5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~   84 (333)
                      +|||+|+||+||++++|+|+|||+|||||+|+|+|+||+|.|+|+|||||||||||+|||+++++++|+||||++|+||+
T Consensus       126 ~ai~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~g~~f~  205 (435)
T PLN02658        126 YAIHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIFGGHFQ  205 (435)
T ss_pred             cEEEEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEecCccEEEEecCCCCeeEEEEeecCCccc
Confidence            69999999999988999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCccCCccccccCccccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccccc
Q 019943           85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLV  164 (333)
Q Consensus        85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~~  164 (333)
                      ||||||||+|||||||||++|+|++|+.++++|+|++|++|++|+++|+|||||||||||||+||||||+||+||||+++
T Consensus       206 LPdlGpiG~nglanpRDF~~P~a~~ed~~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~svs~  285 (435)
T PLN02658        206 LPDLGPIGANGLANPRDFLHPVAWFEDGSRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLSKFCPVNTVLF  285 (435)
T ss_pred             CCCCCcccccCCCCHhHccCCccccccccCCcEEEEEEeCCeeEEEecCCCCceEeeecCcccceEechHHceecccccc
Confidence            99999999999999999999999999877667999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCCC
Q 019943          165 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTP  244 (333)
Q Consensus       165 dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~p  244 (333)
                      ||+||||||||||||++||+++||||||+|||+++++||||||||||+||||||||+|+|+||++||+|||+||||+|+|
T Consensus       286 dH~dPSI~tvltaps~~pg~a~~dFVIF~PRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak~~gf~pGg~SLH~~~~p  365 (435)
T PLN02658        286 DHADPSINTVLTAPTDKPGVALADFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIYGSYEAKADGFLPGGASLHSCMTP  365 (435)
T ss_pred             ccCCCCceEEEeccCCCCCccccceEEECCccccccCccCCCCCccchhhhhhhhcccccccccCCccCCeeeecCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             CCCChhHHHHHHhcCCCC--CCceeecceEEEEeeccCcccchhhhcCCCCCchhhhchhhhhcCCCCC
Q 019943          245 HGPDTKTYEATIARGSEA--GPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYRCWIGLRSHFSYE  311 (333)
Q Consensus       245 HGP~~~~~e~a~~~~~~~--~P~~~~~~lAfM~eT~~~l~~t~~A~~~~~~~~~Y~~~W~~~~~~f~~~  311 (333)
                      ||||+++||+|+++  ++  +|+|+++||||||||+++|++|+||++++.+|++|++||++|+++|+++
T Consensus       366 HGPd~~~~e~a~~~--~~~~~p~k~~~~lAfMfEt~~~l~~T~~A~~~~~~d~~Y~~~W~~l~~~f~~~  432 (435)
T PLN02658        366 HGPDTATYEATIAR--PCADAPSKLTGTLAFMFESSLIPRVCPWALESPFRDRDYYQCWIGLKSHFSRE  432 (435)
T ss_pred             CCCCHHHHHhhhcc--cccCCCeeccceEEEEEEccccccccHHHHhCccccchHHHHHHHHhhcCCcc
Confidence            99999999999988  66  9999999999999999999999999998778999999999999999764

>PRK05341 homogentisate 1,2-dioxygenase; Provisional	Back alignment and domain information

>TIGR01015 hmgA homogentisate 1,2-dioxygenase	Back alignment and domain information

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism	Back alignment and domain information

>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]	Back alignment and domain information

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	Back alignment and domain information

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>smart00835 Cupin_1 Cupin	Back alignment and domain information

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5	Back alignment and domain information

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC	Back alignment and domain information

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)	Back alignment and domain information

>PRK13290 ectC L-ectoine synthase; Reviewed	Back alignment and domain information

>PRK04190 glucose-6-phosphate isomerase; Provisional	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PRK15457 ethanolamine utilization protein EutQ; Provisional	Back alignment and domain information

>PRK11171 hypothetical protein; Provisional	Back alignment and domain information

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Back alignment and domain information

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine	Back alignment and domain information

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional	Back alignment and domain information

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional	Back alignment and domain information

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1	Back alignment and domain information

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A	Back alignment and domain information

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]	Back alignment and domain information

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK11171 hypothetical protein; Provisional	Back alignment and domain information

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B	Back alignment and domain information

>PF12852 Cupin_6: Cupin	Back alignment and domain information

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family	Back alignment and domain information

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA	Back alignment and domain information

>PRK13502 transcriptional activator RhaR; Provisional	Back alignment and domain information

>PRK13500 transcriptional activator RhaR; Provisional	Back alignment and domain information

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PRK13501 transcriptional activator RhaR; Provisional	Back alignment and domain information

>PRK13503 transcriptional activator RhaS; Provisional	Back alignment and domain information

>PLN00212 glutelin; Provisional	Back alignment and domain information

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional	Back alignment and domain information

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []	Back alignment and domain information

>PLN00212 glutelin; Provisional	Back alignment and domain information

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	Back alignment and domain information

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)	Back alignment and domain information

>TIGR00218 manA mannose-6-phosphate isomerase, class I	Back alignment and domain information

>PF14525 AraC_binding_2: AraC-binding-like domain	Back alignment and domain information

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional	Back alignment and domain information

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional	Back alignment and domain information

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5	Back alignment and domain information

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase	Back alignment and domain information

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)	Back alignment and domain information

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins	Back alignment and domain information

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional	Back alignment and domain information

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15131 mannose-6-phosphate isomerase; Provisional	Back alignment and domain information

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes	Back alignment and domain information

>PRK15186 AraC family transcriptional regulator; Provisional	Back alignment and domain information

>PLN02288 mannose-6-phosphate isomerase	Back alignment and domain information

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length	Back alignment and domain information

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators	Back alignment and domain information

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		333
1ey2_A		471	Human Homogentisate Dioxygenase With Fe(ii) Length		2e-97

>pdb|1EY2|A Chain A, Human Homogentisate Dioxygenase With Fe(ii) Length = 471

Back alignment and structure

Iteration: 1

Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 177/303 (58%), Positives = 216/303 (71%), Gaps = 6/303 (1%) Query: 10 YTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 69 + N S +N F N+DGDFL+VPQKG L I TE GK V P EI V+ +G RF++ + + Sbjct: 162 FLCNTSXENRCFYNSDGDFLIVPQKGNLLIYTEFGKXLVQPNEICVIQRGXRFSIDVFE- 220 Query: 70 PSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLG-YTIVQKFGGELF 128 +RGYI E++G HF+LPDLGPIGANGLA PRDFL+P AW+E+ G YT++ K+ G+LF Sbjct: 221 ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLF 280 Query: 129 TARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLD 188 A+QD SPFNVVAWHGNY PYKY+L F N+V DH DPSI TVLTA + +PGVA+ D Sbjct: 281 AAKQDVSPFNVVAWHGNYTPYKYNLKNFXVINSVAFDHADPSIFTVLTAKSVRPGVAIAD 340 Query: 189 FVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPD 248 FVIFPPRW VA+ TFRPPYYHRNC SEF GLIRG YEAK GFLPGG SLHS TPHGPD Sbjct: 341 FVIFPPRWGVADKTFRPPYYHRNCXSEFXGLIRGHYEAKQGGFLPGGGSLHSTXTPHGPD 400 Query: 249 TKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRS 306 +E A + P +I D T AF FES L + W L+ S +D +Y++CW L+S Sbjct: 401 ADCFEK--ASKVKLAPERIADGTXAFXFESSLSLAVTKWGLKASRCLDENYHKCWEPLKS 458 Query: 307 HFS 309 HF+ Sbjct: 459 HFT 461

PyMOL of 1ey2

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		333
1eyb_A		471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	1e-113
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A Length = 471	Back alignment and structure

 Score =  334 bits (858), Expect = e-113
 Identities = 182/303 (60%), Positives = 222/303 (73%), Gaps = 6/303 (1%)

Query: 10  YTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 69
           +  N SM+N  F N+DGDFL+VPQKG L I TE GK+ V P EI V+ +G RF++ + + 
Sbjct: 162 FLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFE- 220

Query: 70  PSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLG-YTIVQKFGGELF 128
            +RGYI E++G HF+LPDLGPIGANGLA PRDFL+P AW+E+    G YT++ K+ G+LF
Sbjct: 221 ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLF 280

Query: 129 TARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLD 188
            A+QD SPFNVVAWHGNY PYKY+L  F   N+V  DH DPSI TVLTA + +PGVA+ D
Sbjct: 281 AAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIAD 340

Query: 189 FVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPD 248
           FVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD
Sbjct: 341 FVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPD 400

Query: 249 TKTYEATIARGSEAGPYKI-TDTMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRS 306
              +E   A   +  P +I   TMAFMFES L   +  W L+ S  +D +Y++CW  L+S
Sbjct: 401 ADCFEK--ASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKS 458

Query: 307 HFS 309
           HF+
Sbjct: 459 HFT 461

PyMOL of 1eyb

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		333
1eyb_A		471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	100.0
3d0j_A		140	Uncharacterized protein CA_C3497; beta-barrel, str	99.29
1yfu_A		174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.77
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.62
1zvf_A		176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.53
3lwc_A		119	Uncharacterized protein; structural genomics, unkn	98.42
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	98.35
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	98.32
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	98.3
1v70_A		105	Probable antibiotics synthesis protein; structural	98.24
4h7l_A		157	Uncharacterized protein; structural genomics, PSI-	98.21
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	98.19
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	98.19
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	98.18
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	98.17
3myx_A		238	Uncharacterized protein pspto_0244; protein of unk	98.1
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	98.08
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.04
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.0
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	97.99
3bcw_A		123	Uncharacterized protein; structural genomics, join	97.97
2pyt_A		133	Ethanolamine utilization protein EUTQ; structural	97.95
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	97.95
3i7d_A		163	Sugar phosphate isomerase; YP_168127.1, structural	97.94
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	97.94
4i4a_A		128	Similar to unknown protein; structural genomics, P	97.93
3es4_A		116	Uncharacterized protein DUF861 with A RMLC-like C;	97.91
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	97.89
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	97.89
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	97.88
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	97.85
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	97.79
2bnm_A		198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	97.76
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	97.74
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	97.71
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	97.7
1dgw_A		178	Canavalin; duplicated swiss-roll beta barrels, loo	97.7
3h8u_A		125	Uncharacterized conserved protein with double-STR	97.69
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	97.69
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	97.69
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	97.69
1vr3_A		191	Acireductone dioxygenase; 13543033, structural gen	97.68
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	97.68
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	97.66
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	97.64
1o4t_A		133	Putative oxalate decarboxylase; double-stranded be	97.63
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	97.63
2vpv_A		166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	97.62
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	97.62
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	97.59
1fi2_A		201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	97.57
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	97.55
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	97.52
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	97.51
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	97.5
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	97.5
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	97.47
3myx_A		238	Uncharacterized protein pspto_0244; protein of unk	97.46
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	97.39
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	97.37
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	97.34
2f4p_A		147	Hypothetical protein TM1010; double-stranded beta-	97.34
1sq4_A		278	GLXB, glyoxylate-induced protein; structural genom	97.34
1zrr_A		179	E-2/E-2' protein; nickel, cupin, beta helix, methi	97.29
1sef_A		274	Conserved hypothetical protein; structural genomic	97.26
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	97.2
4b29_A		217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	97.14
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	97.12
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	97.1
3es1_A		172	Cupin 2, conserved barrel domain protein; YP_00116	97.07
2arc_A		164	ARAC, arabinose operon regulatory protein; transcr	97.06
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	97.02
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	97.01
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	97.0
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	97.0
1sfn_A		246	Conserved hypothetical protein; structural genomic	97.0
3kgl_A		466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	96.92
1sef_A		274	Conserved hypothetical protein; structural genomic	96.9
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	96.88
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	96.88
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	96.84
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	96.72
4e2q_A		266	Ureidoglycine aminohydrolase; BI-cupin, manganese	96.71
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	96.67
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	96.59
3c3v_A		510	Arachin ARAH3 isoform; peanut allergen, allergy, g	96.57
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	96.46
1sfn_A		246	Conserved hypothetical protein; structural genomic	96.45
2q1z_B		195	Anti-sigma factor CHRR, transcriptional activator;	96.29
3fz3_A		531	Prunin; TREE NUT allergen, allergy, amandin, almon	96.28
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	96.25
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	96.21
2o1q_A		145	Putative acetyl/propionyl-COA carboxylase, alpha;	96.18
3gbg_A		276	TCP pilus virulence regulatory protein; cupin, hel	96.12
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	96.06
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	96.02
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	96.02
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	95.96
3ebr_A		159	Uncharacterized RMLC-like cupin; structural genomi	95.89
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	95.88
1sq4_A		278	GLXB, glyoxylate-induced protein; structural genom	95.66
3kgl_A		466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	95.63
4e2q_A		266	Ureidoglycine aminohydrolase; BI-cupin, manganese	95.55
3ksc_A		496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	95.53
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	95.45
3o14_A		223	Anti-ecfsigma factor, CHRR; cupin, structural geno	95.33
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	95.2
3cjx_A		165	Protein of unknown function with A cupin-like FOL;	95.12
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	95.11
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	94.98
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	94.85
3ksc_A		496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	94.72
2y0o_A		175	Probable D-lyxose ketol-isomerase; carbohydrate me	94.62
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	94.56
3c3v_A		510	Arachin ARAH3 isoform; peanut allergen, allergy, g	94.55
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	94.01
2qdr_A		303	Uncharacterized protein; double-stranded beta-heli	93.65
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	93.22
2qjv_A		270	Uncharacterized IOLB-like protein; structural geno	89.11
2pa7_A		141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	89.07
3st7_A		369	Capsular polysaccharide synthesis enzyme CAP5F; ro	89.03
1pmi_A		440	PMI, phosphomannose isomerase; aldose-ketose isome	88.48
1qwr_A		319	Mannose-6-phosphate isomerase; structural genomics	88.26
3o14_A		223	Anti-ecfsigma factor, CHRR; cupin, structural geno	88.22
3kmh_A		246	D-lyxose isomerase; cupin beta-barrel, structural	88.18
3bb6_A		127	Uncharacterized protein YEAR; structural genomics,	86.58
1zx5_A		300	Mannosephosphate isomerase, putative; STRU genomic	86.31
2wfp_A		394	Mannose-6-phosphate isomerase; APO-structure, meta	85.74
3dl3_A		119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	85.63
3bal_A		153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	85.12
1ywk_A		289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	83.86
1xru_A		282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	83.7
1yud_A		170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	81.6

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A	Back alignment and structure

Probab=100.00  E-value=1.6e-124  Score=935.49  Aligned_cols=304  Identities=59%  Similarity=1.100  Sum_probs=277.2

Q ss_pred             EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943            5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ   84 (333)
Q Consensus         5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~   84 (333)
                      +|||+|+||+||.+++|+|+|||||||||+|+|+|+||+|.|+|+|||||||||||+|||++.+ ++|+||||++|+||+
T Consensus       157 ~aI~~y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRGi~frv~l~~-p~Rgyi~E~~g~~f~  235 (471)
T 1eyb_A          157 LAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFE-ETRGYILEVYGVHFE  235 (471)
T ss_dssp             EEEEEEEECSCCCSEEEEESSEEEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEECSS-SEEEEEEEEESCCEE
T ss_pred             eEEEEEeCCCCcccceeecCCCCEEEEEEeCCEEEEEecccEEeccCCEEEECCccEEEEeeCC-CceEEEEEccCCccc
Confidence            6999999999998899999999999999999999999999999999999999999999999977 999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCccCCccccccCcccc--EEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceecccc
Q 019943           85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSRLG--YTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTV  162 (333)
Q Consensus        85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~~~--~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~  162 (333)
                      ||||||||+|||||+|||++|+|+|+++++ +  |+|++|++|++|+++|+||||||||||||||||||||+||+||||+
T Consensus       236 LP~lGpiGanglan~RDF~~PvA~~ed~~~-~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~PYkydl~~F~pI~sv  314 (471)
T 1eyb_A          236 LPDLGPIGANGLANPRDFLIPIAWYEDRQV-PGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSV  314 (471)
T ss_dssp             CCCCGGGTTSCBSCGGGEEEECCCCCCCEE-EEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCCCCS
T ss_pred             cccccccccCCccChhhccCccccccccCC-CccEEEEEEeCCeeEEEecCCCCceEEeEcCcccCeEechHHccccccc
Confidence            999999999999999999999999998754 6  9999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCC
Q 019943          163 LVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCM  242 (333)
Q Consensus       163 ~~dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g  242 (333)
                      ++||+||||||||||||++||+||||||||+|||+++|+||||||||||+||||||||+|+|+||++||+|||+||||+|
T Consensus       315 s~dH~dPSIftVltaps~~pg~av~dFViFpPRw~v~e~TfrpPyyHrNv~SEfmgli~G~y~ak~~Gf~pGg~SLH~~~  394 (471)
T 1eyb_A          315 AFDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTM  394 (471)
T ss_dssp             SSSCCCGGGGEEEEEECSSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------CCTTCEEEECTT
T ss_pred             ccccCCCCcceEEEccCCCCCceEEeEeecCCccCCCCCccCCCCCccchhhhhhhhccccccccccCcCCCceeccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             CCCCCChhHHHHHHhcCCCCCCceeec-ceEEEEeeccCcccchhhhcCC-CCCchhhhchhhhhcCCCCCc
Q 019943          243 TPHGPDTKTYEATIARGSEAGPYKITD-TMAFMFESCLIPRICPWALESP-FMDHDYYRCWIGLRSHFSYEE  312 (333)
Q Consensus       243 ~pHGP~~~~~e~a~~~~~~~~P~~~~~-~lAfM~eT~~~l~~t~~A~~~~-~~~~~Y~~~W~~~~~~f~~~~  312 (333)
                      +|||||+++||+|+++  +|+|+|+++ ||||||||++||++|+||++++ .+|++|++||++|+++|++..
T Consensus       395 ~pHGPd~~~~E~a~~~--~l~p~k~~d~~lAfMfET~~pl~~T~~Al~~~~~~d~~Y~~~W~~l~~~f~~~~  464 (471)
T 1eyb_A          395 TPHGPDADCFEKASKV--KLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS  464 (471)
T ss_dssp             CCBCCCHHHHHHHHHS--CCCCEEESTTCCEEEEEESSCCEECHHHHHHCC------------CCCCCCTTC
T ss_pred             cCCCCChhhhHHhhcc--ccCceecCCceEEEEEEccccccccHHHHhCccccCccHHHhhhhhhccCCCCC
Confidence            9999999999999999  999999976 9999999999999999999976 689999999999999999744

PyMOL of 1eyb

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20	Back alignment and structure

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}	Back alignment and structure

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}	Back alignment and structure

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11	Back alignment and structure

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}	Back alignment and structure

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21	Back alignment and structure

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11	Back alignment and structure

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}	Back alignment and structure

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A	Back alignment and structure

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}	Back alignment and structure

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}	Back alignment and structure

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*	Back alignment and structure

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A	Back alignment and structure

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3	Back alignment and structure

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3	Back alignment and structure

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}	Back alignment and structure

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*	Back alignment and structure

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13	Back alignment and structure

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3	Back alignment and structure

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*	Back alignment and structure

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13	Back alignment and structure

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}	Back alignment and structure

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13	Back alignment and structure

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A	Back alignment and structure

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		333
d1eyba_		439	b.82.1.4 (A:) Homogentisate dioxygenase {Human (Ho	1e-134

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]} Length = 439	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  386 bits (992), Expect = e-134
 Identities = 182/303 (60%), Positives = 222/303 (73%), Gaps = 6/303 (1%)

Query: 10  YTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDG 69
           +  N SM+N  F N+DGDFL+VPQKG L I TE GK+ V P EI V+ +G RF++ + + 
Sbjct: 135 FLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDVFE- 193

Query: 70  PSRGYIAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWFEEGSRLG-YTIVQKFGGELF 128
            +RGYI E++G HF+LPDLGPIGANGLA PRDFL+P AW+E+    G YT++ K+ G+LF
Sbjct: 194 ETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLF 253

Query: 129 TARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLD 188
            A+QD SPFNVVAWHGNY PYKY+L  F   N+V  DH DPSI TVLTA + +PGVA+ D
Sbjct: 254 AAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTVLTAKSVRPGVAIAD 313

Query: 189 FVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPD 248
           FVIFPPRW VA+ TFRPPYYHRNCMSEFMGLIRG YEAK  GFLPGG SLHS MTPHGPD
Sbjct: 314 FVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMTPHGPD 373

Query: 249 TKTYEATIARGSEAGPYKI-TDTMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRS 306
              +E   A   +  P +I   TMAFMFES L   +  W L+ S  +D +Y++CW  L+S
Sbjct: 374 ADCFEK--ASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKS 431

Query: 307 HFS 309
           HF+
Sbjct: 432 HFT 434

PyMOL of d1eyba_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		333
d1eyba_		439	Homogentisate dioxygenase {Human (Homo sapiens) [T	100.0
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.92
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.25
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	98.2
d2pyta1		128	Ethanolamine utilization protein EutQ {Salmonella	98.12
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.1
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	98.05
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	98.03
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	98.02
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.02
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	97.93
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	97.88
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	97.82
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	97.76
d1o5ua_		88	Hypothetical protein TM1112 {Thermotoga maritima [	97.76
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	97.64
d1uika1		203	Seed storage 7S protein {Soybean (Glycine max), be	97.64
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	97.63
d1y9qa2		99	Probable transcriptional regulator VC1968, C-termi	97.63
d1uija1		170	Seed storage 7S protein {Soybean (Glycine max), be	97.6
d1zrra1		179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.47
g1dgw.1		168	Seed storage 7S protein {Jack bean (Canavalia ensi	97.47
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	97.47
d1dgwa_		178	Seed storage 7S protein {Jack bean (Canavalia ensi	97.43
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	97.41
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	97.38
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	97.36
d1fxza2		174	Seed storage 7S protein {Soybean (Glycine max), pr	97.36
d1x82a_		190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	97.34
d1od5a2		173	Seed storage 7S protein {Soybean (Glycine max), gl	97.27
d2f4pa1		134	Hypothetical protein TM1010 {Thermotoga maritima [	97.24
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	97.17
d2phla2		162	Seed storage 7S protein {French bean (Phaseolus vu	97.17
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	97.16
d1yfua1		174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.09
d2et1a1		201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	97.06
d1vr3a1		179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.01
d1uika2		185	Seed storage 7S protein {Soybean (Glycine max), be	96.84
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	96.77
d1zvfa1		175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	96.71
d2arca_		161	Regulatory protein AraC {Escherichia coli [TaxId:	96.66
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	96.44
d2phla1		200	Seed storage 7S protein {French bean (Phaseolus vu	96.39
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	96.33
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	96.24
d3bu7a1		355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	95.67
d1fxza1		239	Seed storage 7S protein {Soybean (Glycine max), pr	95.35
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	94.76
d1od5a1		245	Seed storage 7S protein {Soybean (Glycine max), gl	93.51
d3bu7a1		355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	93.23
d1qwra_		315	Mannose-6-phosphate isomerase ManA {Bacillus subti	92.05
d2pa7a1		135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	90.04
d1pmia_		440	Phosphomannose isomerase {Yeast (Candida albicans)	89.51
d2o1qa1		144	Putative acetyl/propionyl-CoA carboxylase subunit	86.7
d3dl3a1		96	Tellurite resistance protein B, TehB {Vibrio fisch	86.02
d1zx5a1		299	Putative mannosephosphate isomerase AF0035 {Archae	83.69
d3bb6a1		109	Uncharacterized protein YeaR {Escherichia coli [Ta	80.64

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-120  Score=899.47  Aligned_cols=306  Identities=59%  Similarity=1.086  Sum_probs=277.7

Q ss_pred             EEEEEEeeCCCCCCCceecCCCCEEEEEEeCeEEEEEecceEEecCCeEEEECCccEEEeeCCCCCeEEEEEeecCCcee
Q 019943            5 FTCNRYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRGYIAEIFGTHFQ   84 (333)
Q Consensus         5 ~ai~~y~~~~sM~~~~~~n~DgDeL~~v~~G~l~l~te~G~l~v~pGd~~VIPRG~~~Rv~~~~~~~r~~iiE~~g~~~~   84 (333)
                      +|||+|.||+||++++|+|+|||||+|||+|+++|+||||.|.+++||||||||||+||+++ ++++|+||||++|.+|+
T Consensus       130 ~aihiy~~n~sM~~~~f~NADGDeLi~~~~Gsg~l~TefG~L~v~pGDyvVIPRG~~frv~~-~~~~r~yiiE~~g~~~~  208 (439)
T d1eyba_         130 LAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEICVIQRGMRFSIDV-FEETRGYILEVYGVHFE  208 (439)
T ss_dssp             EEEEEEEECSCCCSEEEEESSEEEEEEEEESCEEEEETTEEEEECTTEEEEECTTCCEEEEC-SSSEEEEEEEEESCCEE
T ss_pred             cEEEEEecCCCCccceeEcCCCCEEEEEEeCcEEEEEeeeEEEecCCcEEEecCceEEEEec-CCCceEEEEeecCceee
Confidence            79999999999998999999999999999999999999999999999999999999999998 45999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCccCCccccccCcc-ccEEEEEEECCceEEEEcCCCCCeEeeecCCccceEeccCCceeccccc
Q 019943           85 LPDLGPIGANGLAAPRDFLVPTAWFEEGSR-LGYTIVQKFGGELFTARQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVL  163 (333)
Q Consensus        85 lPe~GpiG~ngla~~RDf~~P~a~~e~~~~-~~~~vv~K~~g~l~~~~~~hsPfDVVgW~G~~~Pykynl~~F~pi~s~~  163 (333)
                      |||+||||+|||||||||++|+|+++++++ ++|+|++|++|++++++|+|||||||||||||+||||||+||+||||++
T Consensus       209 lPe~Gpig~~~l~~pRDf~~P~a~~ed~~~~~~~~v~~K~~g~l~~~~~~hsPfDVVgWhG~~~Pykynl~dF~pI~sv~  288 (439)
T d1eyba_         209 LPDLGPIGANGLANPRDFLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVA  288 (439)
T ss_dssp             CCCCGGGTTSCBSCGGGEEEECCCCCCCEEEEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCCCCSS
T ss_pred             cCcccccccccccChHHhcccccccccccCCCcEEEEEEECCEEEEEEecCCCceEEeecCcceeEEEehHhceeccccc
Confidence            999999999999999999999999988653 5799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcceEEeecCCCCCceeeeEEEeCCccccCCCCCCCCCCCCCCccceeEEeecccccccCCcCCCeeeeecCCC
Q 019943          164 VDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMT  243 (333)
Q Consensus       164 ~dH~dPsi~tvlta~s~~~g~~~~dFviF~PRw~~~~~t~rpPyyHrN~dsE~m~~i~G~y~a~~~g~~pG~~SlHp~g~  243 (333)
                      +||+||||||||||+|+.+|+++||||||||||+++|+||||||||||+||||||||+|+|++|++||+|||+||||+|+
T Consensus       289 ~dH~pPsihtvfta~s~~~G~~v~dFvifPprw~~~~~tfrpPyyHrNv~sE~m~~i~G~y~ar~~gf~pGg~SlHp~g~  368 (439)
T d1eyba_         289 FDHADPSIFTVLTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPGGGSLHSTMT  368 (439)
T ss_dssp             SSCCCGGGGEEEEEECSSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------CCTTCEEEECTTC
T ss_pred             cccCCCcceeEEecCCCCCCceeEEEEEeCCcccccCCcccCCcccccccceeeeEeecCcccccCCccCCeEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCChhHHHHHHhcCCCCCCcee-ecceEEEEeeccCcccchhhhc-CCCCCchhhhchhhhhcCCCCCcc
Q 019943          244 PHGPDTKTYEATIARGSEAGPYKI-TDTMAFMFESCLIPRICPWALE-SPFMDHDYYRCWIGLRSHFSYEEA  313 (333)
Q Consensus       244 pHGP~~~~~e~a~~~~~~~~P~~~-~~~lAfM~eT~~~l~~t~~A~~-~~~~~~~Y~~~W~~~~~~f~~~~~  313 (333)
                      |||||+++||+|+++  +++|+|+ ++||||||||++||++|+||++ ++.+|++|++||++|+++|+++++
T Consensus       369 pHGP~p~~~e~a~~~--~~~p~k~~~~~lAfM~eT~~pl~vt~~A~~~~~~~d~~Y~~sW~~l~~~F~p~~~  438 (439)
T d1eyba_         369 PHGPDADCFEKASKV--KLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNSR  438 (439)
T ss_dssp             CBCCCHHHHHHHHHS--CCCCEEESTTCCEEEEEESSCCEECHHHHHHCC------------CCCCCCTTCC
T ss_pred             CCCCChHHHHHHhcC--ccCCcccCCccEEEEEeCCCccccCHHHhhcccccCccHHHHHhhHhccCCcccC
Confidence            999999999999999  9999998 8999999999999999999998 546899999999999999998654

PyMOL of d1eyba_

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}	Back information, alignment and structure

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}	Back information, alignment and structure

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}	Back information, alignment and structure

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}	Back information, alignment and structure

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}	Back information, alignment and structure

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}	Back information, alignment and structure

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}	Back information, alignment and structure

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}	Back information, alignment and structure

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}	Back information, alignment and structure

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}	Back information, alignment and structure