Citrus Sinensis ID: 019952

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MGTISGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAETGRMVGPVSVASGAGKKGRGREYYEEEYEEEEEGLSGKKLRRDGGGFEGYGSGSGGKSGLTGALIPAEKKGEGRSRVDRESDNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
cccccccccccEEEEEEEccEEEEEEcccEEEccccccccccccccccccccccccccEEEEEEccccEEEEEEcccccEEEccEEEccccccEEcccccEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHcccccccccEEEEccccccccccccccHHHHHHHHHHccccEEEEEEEcccEEEEEEEEEEEcc
cccccccHHHHHEEEEcccccEEEEEEEEEEEEEccccccccEEEEccccccEEEHHHEEEEEEcccccEEEEEEccccEEEccEEccccccccccccccEEEEccEEEEEEEccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccHHHHHHccHHcccccccccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEHHHEcc
mgtisgndVEAGFAKLQGEDFEYYMQTYSIIlgrnskkstvdvdlsslgggmnisrhharIFYDFTRRRFALEVlgkngcfvegvlhlpgnppvkldsqdllqigdkefyfLLPVrsilggpvgprhyvgssavvphygyggaetgrmvgpvsvasgagkkgrgreyyeeeyeeeeeglsgkklrrdgggfegygsgsggksgltgalipaekkgegrsrvdresDNQQLLQLEEKDVVSSVATVLsdlcgpgewmpmEKLYTELVEQYgdvwhhsrvrryltadewpgpeskekpwYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
mgtisgndveAGFAKLQGEDFEYYMQTYSIilgrnskksTVDVDLsslgggmnisrhHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAetgrmvgpvsvasgagkkgrgreyyeeeyeeeeeglsgkklrrdGGGFegygsgsggksgltgALIPaekkgegrsrvdrESDNQQllqleekdvvsSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRyltadewpgpeskekPWYGLLMLLRKYPEHFVINtrskgrvtLEFVSLVSLLS
MGTISGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAETGRMVGPVSVASGAGKKGRGReyyeeeyeeeeeGLSGKKLRRDgggfegygsgsggksgltgALIPAEKKGEGRSRVDRESDNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
***********GFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAETGRMV***************************************************************************************DVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVS***
*************AKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPV******************************************************************************************************************************VATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVR*******************GLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
MGTISGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAETGRMVGPVSVA**************************KKLRRDGGGFEGYGSGSGGKSGLTGALIPAE***************QQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
******NDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGG**********************************************************************************SDNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
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MGTISGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGPRHYVGSSAVVPHYGYGGAETGRMVGPVSVASGAGKKGRGREYYEEEYEEEEEGLSGKKLRRDGGGFEGYGSGSGGKSGLTGALIPAEKKGEGRSRVDRESDNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
O14270 743 Fork head transcription f yes no 0.318 0.142 0.445 2e-15
P39521 936 Pre-rRNA-processing prote yes no 0.297 0.105 0.415 3e-14
Q7ZX03 642 Forkhead box protein K2 O N/A no 0.243 0.126 0.428 3e-10
P41813 862 Fork head protein homolog no no 0.540 0.208 0.248 4e-10
Q3UCQ1 651 Forkhead box protein K2 O yes no 0.246 0.125 0.382 2e-09
P85037 733 Forkhead box protein K1 O yes no 0.249 0.113 0.386 3e-09
P42128 719 Forkhead box protein K1 O no no 0.249 0.115 0.386 3e-09
Q01167 660 Forkhead box protein K2 O no no 0.246 0.124 0.361 5e-09
P40466484 Fork head protein homolog no no 0.300 0.206 0.299 4e-08
O60129 642 Fork head protein homolog no no 0.306 0.158 0.318 2e-06
>sp|O14270|FHL1_SCHPO Fork head transcription factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fhl1 PE=4 SV=2 Back     alignment and function desciption
 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 4/110 (3%)

Query: 5   SGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYD 64
           S N V+A +AKL+ E F +++QT  + +GR +  S+ D D+  LG    ISR HA+IFY 
Sbjct: 15  STNRVQA-YAKLEFEKFSFFVQTLQVTMGRKASNSS-DCDVH-LGDTKAISRQHAKIFYS 71

Query: 65  FTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLP 114
           F  +RF + V+GKNG FV+G     G   V L S   +QIG   F FLLP
Sbjct: 72  FPNQRFEISVMGKNGAFVDGEFVERGK-SVPLRSGTRVQIGQISFSFLLP 120
Acts as a transcriptional activator with a role in the regulation of mitosis. Required for the correct timing, positioning and contraction of the division septum.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P39521|FHL1_YEAST Pre-rRNA-processing protein FHL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FHL1 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZX03|FOXK2_XENLA Forkhead box protein K2 OS=Xenopus laevis GN=foxk2 PE=2 SV=2 Back     alignment and function description
>sp|P41813|FKH2_YEAST Fork head protein homolog 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FKH2 PE=1 SV=1 Back     alignment and function description
>sp|Q3UCQ1|FOXK2_MOUSE Forkhead box protein K2 OS=Mus musculus GN=Foxk2 PE=2 SV=3 Back     alignment and function description
>sp|P85037|FOXK1_HUMAN Forkhead box protein K1 OS=Homo sapiens GN=FOXK1 PE=1 SV=1 Back     alignment and function description
>sp|P42128|FOXK1_MOUSE Forkhead box protein K1 OS=Mus musculus GN=Foxk1 PE=1 SV=2 Back     alignment and function description
>sp|Q01167|FOXK2_HUMAN Forkhead box protein K2 OS=Homo sapiens GN=FOXK2 PE=1 SV=3 Back     alignment and function description
>sp|P40466|FKH1_YEAST Fork head protein homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FKH1 PE=1 SV=1 Back     alignment and function description
>sp|O60129|FKH2_SCHPO Fork head protein homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fkh2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
255583984329 transcriptional activator, putative [Ric 0.960 0.972 0.804 1e-140
224065403317 predicted protein [Populus trichocarpa] 0.927 0.974 0.790 1e-135
356527348322 PREDICTED: uncharacterized protein LOC10 0.942 0.975 0.762 1e-132
356567822323 PREDICTED: uncharacterized protein LOC10 0.951 0.981 0.752 1e-132
356527346310 PREDICTED: uncharacterized protein LOC10 0.906 0.974 0.746 1e-130
356567820311 PREDICTED: uncharacterized protein LOC10 0.915 0.980 0.737 1e-130
356527344319 PREDICTED: uncharacterized protein LOC10 0.933 0.974 0.756 1e-129
359495521329 PREDICTED: uncharacterized protein LOC10 0.969 0.981 0.731 1e-129
356567818320 PREDICTED: uncharacterized protein LOC10 0.942 0.981 0.746 1e-129
297829274312 hypothetical protein ARALYDRAFT_317584 [ 0.897 0.958 0.727 1e-125
>gi|255583984|ref|XP_002532738.1| transcriptional activator, putative [Ricinus communis] gi|223527515|gb|EEF29640.1| transcriptional activator, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 275/342 (80%), Positives = 294/342 (85%), Gaps = 22/342 (6%)

Query: 1   MGTISGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHAR 60
           MGT SGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHAR
Sbjct: 1   MGT-SGNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHAR 59

Query: 61  IFYDFTRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 120
           IFYDF RRRFALEVLGKNGC VEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILG
Sbjct: 60  IFYDFARRRFALEVLGKNGCLVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILG 119

Query: 121 GPVGPRHYVGSSAVVPHYGYGGAETGRMVGPVSVASGAGKKGRGREYYEEEYEEEEE--- 177
           G +G RH+V    VVP Y  GGAE  RM GPV+V     K GRGRE YEEE++++E+   
Sbjct: 120 GHLGLRHHVN---VVPQYHSGGAE--RMAGPVAVR----KAGRGRESYEEEFDDDEDEDD 170

Query: 178 --GLSGKKLRRDGGGFEGYGSGSGG----KSGLTGALIPAEKKGEGRSRVDRESDNQQLL 231
             G SGKK R    G EG+G G+ G    K GL GAL+P++KK +GRSRVDRESDNQQLL
Sbjct: 171 IGGSSGKKRRE---GLEGFGYGAVGGSGGKPGLAGALVPSDKKLDGRSRVDRESDNQQLL 227

Query: 232 QLEEKDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPE 291
           QLEEKDVVSSVATVLSDLCGPGEWMPMEKL+ EL+E Y +VWHHSRVRRYLT++EWPGPE
Sbjct: 228 QLEEKDVVSSVATVLSDLCGPGEWMPMEKLHAELLEHYSNVWHHSRVRRYLTSEEWPGPE 287

Query: 292 SKEKPWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS 333
           SK KPWYGLLMLLRKYPEHFVINTRSK RVTLEFVSLVSLLS
Sbjct: 288 SKGKPWYGLLMLLRKYPEHFVINTRSKNRVTLEFVSLVSLLS 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224065403|ref|XP_002301800.1| predicted protein [Populus trichocarpa] gi|222843526|gb|EEE81073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527348|ref|XP_003532273.1| PREDICTED: uncharacterized protein LOC100819026 isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356567822|ref|XP_003552114.1| PREDICTED: uncharacterized protein LOC100787361 isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356527346|ref|XP_003532272.1| PREDICTED: uncharacterized protein LOC100819026 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356567820|ref|XP_003552113.1| PREDICTED: uncharacterized protein LOC100787361 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356527344|ref|XP_003532271.1| PREDICTED: uncharacterized protein LOC100819026 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|359495521|ref|XP_003635010.1| PREDICTED: uncharacterized protein LOC100266010 isoform 2 [Vitis vinifera] gi|296085622|emb|CBI29411.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567818|ref|XP_003552112.1| PREDICTED: uncharacterized protein LOC100787361 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297829274|ref|XP_002882519.1| hypothetical protein ARALYDRAFT_317584 [Arabidopsis lyrata subsp. lyrata] gi|297328359|gb|EFH58778.1| hypothetical protein ARALYDRAFT_317584 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2098480320 FHA2 "forkhead-associated 2" [ 0.909 0.946 0.698 3.9e-115
TAIR|locus:2098540251 AT3G07260 "AT3G07260" [Arabido 0.453 0.601 0.797 2e-69
POMBASE|SPAC1142.08 743 fhl1 "fork head transcription 0.318 0.142 0.445 8.3e-14
CGD|CAL0006246 1152 FHL1 [Candida albicans (taxid: 0.318 0.092 0.403 1.4e-12
UNIPROTKB|Q59ZC8 1152 FHL1 "Potential forkhead-like 0.318 0.092 0.403 1.4e-12
SGD|S000006308 936 FHL1 "Regulator of ribosomal p 0.300 0.106 0.417 2.1e-12
UNIPROTKB|Q758S9 1134 AGOS_AEL327W "AEL327Wp" [Ashby 0.306 0.089 0.4 2.5e-11
ZFIN|ZDB-GENE-030131-2861 585 foxk2 "forkhead box K2" [Danio 0.240 0.136 0.435 9.9e-09
ZFIN|ZDB-GENE-030131-6402 639 foxk1 "forkhead box K1" [Danio 0.234 0.122 0.421 1.9e-08
UNIPROTKB|Q6Q2B1 558 foxk1 "Forkhead box protein K1 0.237 0.141 0.409 2.6e-08
TAIR|locus:2098480 FHA2 "forkhead-associated 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 236/338 (69%), Positives = 263/338 (77%)

Query:     6 GNDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDF 65
             G+DVE GFAKLQGEDFEYYMQ+YSIILGRNSKK+TVDVDLSSLGGGMNISR+HARIFYDF
Sbjct:     8 GSDVEVGFAKLQGEDFEYYMQSYSIILGRNSKKATVDVDLSSLGGGMNISRNHARIFYDF 67

Query:    66 TRRRFALEVLGKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPVGP 125
             TRRRF+LEVLGKNGC VEGVLHLPGNP VKLDSQDLLQIGDKEFYFLLPVRSILGGP+GP
Sbjct:    68 TRRRFSLEVLGKNGCLVEGVLHLPGNPNVKLDSQDLLQIGDKEFYFLLPVRSILGGPLGP 127

Query:   126 RHYV-GSSAVVPHYGYGGAETGRMVGPVSVASGAGKKG-RGRXXXXXXXXXXXXGL---- 179
             RH+V G ++VVP++ Y         GP    SG+GKKG R R                  
Sbjct:   128 RHHVSGQTSVVPYHNYQS-------GP---GSGSGKKGVRSRELYEYDDEDDDDDDDEED 177

Query:   180 ----SGKKLRRDXXXXXXXXXXXXXXXXXXXALIPAEKKGEGRSRVDRESDNQQLLQLEE 235
                 SGKK RRD                        EKK EGRS+VDRE+D+QQ LQLEE
Sbjct:   178 DMRGSGKKTRRDGHEVVYAS---------------GEKKREGRSKVDREADDQQFLQLEE 222

Query:   236 KDVVSSVATVLSDLCGPGEWMPMEKLYTELVEQYGDVWHHSRVRRYLTADEWPGPESKEK 295
             KDVVSSVATVLSDLCGPGEWMPMEKL++ ++++YG+VWHHSRVRRYL+ ++W  PE+K K
Sbjct:   223 KDVVSSVATVLSDLCGPGEWMPMEKLHSVILKEYGNVWHHSRVRRYLSQEDWAIPEAKGK 282

Query:   296 PWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVSLLS 333
             PWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLV+LLS
Sbjct:   283 PWYGLLMLLRKYPEHFVINTRSKGRVTLEFVSLVTLLS 320
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2098540 AT3G07260 "AT3G07260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC1142.08 fhl1 "fork head transcription factor Fhl1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0006246 FHL1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59ZC8 FHL1 "Potential forkhead-like transcriptional regulator" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000006308 FHL1 "Regulator of ribosomal protein (RP) transcription" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|Q758S9 AGOS_AEL327W "AEL327Wp" [Ashbya gossypii ATCC 10895 (taxid:284811)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2861 foxk2 "forkhead box K2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6402 foxk1 "forkhead box K1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Q2B1 foxk1 "Forkhead box protein K1 isoform alpha" [Takifugu rubripes (taxid:31033)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 1e-14
pfam0049867 pfam00498, FHA, FHA domain 9e-09
smart0024052 smart00240, FHA, Forkhead associated domain 2e-06
COG5025 610 COG5025, COG5025, Transcription factor of the Fork 6e-04
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 17  QGEDFEYYMQTYS-IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL 75
                 YY+       +GR+S    + +D  S      +SR HA I YD       +++ 
Sbjct: 10  DASGRRYYLDPGGTYTIGRDSDNCDIVLDDPS------VSRRHAVIRYDGDGGVVLIDLG 63

Query: 76  GKNGCFVEGVLHLPGNPPVKLDSQDLLQIGDKEFYFLL 113
             NG FV G    PG  PV+L   D++++G+    F  
Sbjct: 64  STNGTFVNGQRVSPGE-PVRLRDGDVIRLGNTSISFRF 100

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.57
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 99.56
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.53
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 99.34
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.18
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.09
COG3456 430 Predicted component of the type VI protein secreti 99.01
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.9
COG5025 610 Transcription factor of the Forkhead/HNF3 family [ 97.79
KOG1882293 consensus Transcriptional regulator SNIP1, contain 97.73
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 97.64
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 97.59
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 96.95
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 96.65
TIGR02500410 type_III_yscD type III secretion apparatus protein 96.32
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 96.07
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 91.88
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 88.94
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information 
Probab=99.57  E-value=7.4e-15  Score=109.63  Aligned_cols=67  Identities=40%  Similarity=0.672  Sum_probs=56.3

Q ss_pred             EEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeCCCCCCeecCCCCEEEeC
Q 019952           30 IILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHLPGNPPVKLDSQDLLQIG  105 (333)
Q Consensus        30 IvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~pGs~P~~L~sGDlIqIG  105 (333)
                      ++|||++.   +||.|    +++.|||+||+|.++. ++.|+|+++ |+|||||||+++.++. +++|++||+|+||
T Consensus         1 ~~iGR~~~---~di~l----~~~~iSr~Ha~i~~~~-~~~~~i~d~~s~ngt~vng~~l~~~~-~~~L~~gd~i~~G   68 (68)
T PF00498_consen    1 VTIGRSPD---CDIVL----PDPSISRRHARISFDD-DGQFYIEDLGSTNGTFVNGQRLGPGE-PVPLKDGDIIRFG   68 (68)
T ss_dssp             EEEESSTT---SSEEE----TSTTSSTTSEEEEEET-TEEEEEEESSSSS-EEETTEEESSTS-EEEE-TTEEEEET
T ss_pred             CEEcCCCC---CCEEE----CCHheeeeeeEEEEec-eeeEEEEeCCCCCcEEECCEEcCCCC-EEECCCCCEEEcC
Confidence            58999965   56777    4789999999999985 349999998 5999999999999865 7999999999998

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription] Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 1e-07
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 1e-07
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 1e-07
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 3e-06
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 3e-06
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 3e-06
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 7e-06
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 1e-05
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 1e-05
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 8e-05
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 3e-04
2eh0_A130 KLP, kinesin-like protein KIF1B; FHA domain, KIAA0 3e-04
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 29  SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHL 88
              +GR         DLS       +S  H RI  D    +  LE    +G  +  +  +
Sbjct: 25  EWTIGRRR-----GCDLS-FPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLK-V 77

Query: 89  PGNPPVKLDSQDLLQIGDKE 108
                  L + D++ +  ++
Sbjct: 78  VKKQTCPLQTGDVIYLVYRK 97
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.75
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.71
3po8_A100 RV0020C protein, putative uncharacterized protein 99.71
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.7
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.69
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.69
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.69
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.68
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.68
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.68
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.67
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.67
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.67
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.66
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.65
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.64
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.63
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.63
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.62
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.6
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.6
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.59
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.57
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.57
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.57
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.57
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.56
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.54
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.22
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.22
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.15
3huf_A325 DNA repair and telomere maintenance protein NBS1; 99.12
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.09
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 99.01
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 99.0
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 98.93
4a0e_A123 YSCD, type III secretion protein; transport protei 98.91
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.31
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
Probab=99.75  E-value=6.9e-18  Score=143.09  Aligned_cols=96  Identities=20%  Similarity=0.175  Sum_probs=78.6

Q ss_pred             eEEEEeccc---eEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEE-
Q 019952           12 GFAKLQGED---FEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVL-   86 (333)
Q Consensus        12 a~AkL~G~~---~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~-   86 (333)
                      -+-++.|..   ..|.|....++|||.++   +||.|    ++..|||+||+|.++..++.|+|+|+ |+|||||||++ 
T Consensus        26 ~L~v~~g~~~~g~~~~L~~~~~~IGR~~~---~di~l----~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg~~i   98 (132)
T 3va4_A           26 QLRLFSGTHGPERDFPLYLGKNVVGRSPD---CSVAL----PFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVKPPR   98 (132)
T ss_dssp             EEEECCBTTBSCEEEEECSEEEEEESSTT---SSEEC----CCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETTTTE
T ss_pred             EEEEEeCCCCCceEEEECCCCEEEccCCC---CCEEe----CCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECCEEc
Confidence            333444544   67999999999999987   46666    57899999999999754678999998 69999999987 


Q ss_pred             -eCCCCCCeecCCCCEEEeCCeEEEEEecc
Q 019952           87 -HLPGNPPVKLDSQDLLQIGDKEFYFLLPV  115 (333)
Q Consensus        87 -I~pGs~P~~L~sGDlIqIG~t~f~Fllp~  115 (333)
                       +.++. ++.|++||+|+||++.|.|....
T Consensus        99 ~l~~~~-~~~L~~GD~I~lG~~~l~f~~~~  127 (132)
T 3va4_A           99 VLPPGV-SHRLRDQELILFADFPCQYHRLD  127 (132)
T ss_dssp             EECTTC-CEECCTTCEEEETTEEEEEEECC
T ss_pred             ccCCCC-EEECCCCCEEEECCEEEEEEECC
Confidence             55654 69999999999999999997643
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 2e-06
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 4e-06
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 2e-05
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 0.001
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 0.002
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 0.004
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 29  SIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCFVEGVLHL 88
           +I +GR  + + + +  +       IS  H RI  D        ++   NG  +     L
Sbjct: 34  TIRVGRIVRGNEIAIKDAG------ISTKHLRIESDSGNWVI-QDLGSSNGTLLNSN-AL 85

Query: 89  PGNPPVKLDSQDLLQIGDKEFYFLLPVRSILGGPV 123
                V L   D++++G+     +    + + GP 
Sbjct: 86  DPETSVNLGDGDVIKLGEYTSILV----NFVSGPS 116
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.74
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.68
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.68
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.64
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.64
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.63
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.63
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.61
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.6
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.47
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.46
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.42
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=7.8e-18  Score=134.01  Aligned_cols=91  Identities=30%  Similarity=0.421  Sum_probs=75.7

Q ss_pred             eEEEEe--ccceEEEeecCeEEECCCCCCCCeeeecCCCCCCCcccccceEEEEecCCCcEEEEeC-CCCceEEcCEEeC
Q 019952           12 GFAKLQ--GEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVL-GKNGCFVEGVLHL   88 (333)
Q Consensus        12 a~AkL~--G~~~ey~L~~~sIvIGRss~~~~VDIDLs~lg~s~~ISR~HA~I~~d~~~~~F~LedL-SkNGTfVNG~~I~   88 (333)
                      ++|.|.  ..-..|+|.+..++|||.+++   ||.|    +++.|||+||+|.++  ++.|+|+|+ |+|||||||+++.
T Consensus         5 ~~~~l~~~~~G~~~~l~~~~~~IGR~~~~---di~l----~d~~VSr~Ha~i~~~--~~~~~i~Dl~S~nGt~vNg~~i~   75 (99)
T d2ff4a3           5 AVAYLHDIASGRGYPLQAAATRIGRLHDN---DIVL----DSANVSRHHAVIVDT--GTNYVINDLRSSNGVHVQHERIR   75 (99)
T ss_dssp             CCCEEEETTTCCEEECCSSEEEEESSTTS---SEEC----CCTTSCTTCEEEEEC--SSCEEEEECSCSSCCEETTEECS
T ss_pred             cEEEEEcCCCCCEEEECCCCEEEeeCcCC---CEEE----CCccccceeEEEEEe--CCEEEEEECCCcCCCeECCEEcC
Confidence            344444  334679999999999998864   6666    578999999999996  578999987 5999999999995


Q ss_pred             CCCCCeecCCCCEEEeCCeEEEEEec
Q 019952           89 PGNPPVKLDSQDLLQIGDKEFYFLLP  114 (333)
Q Consensus        89 pGs~P~~L~sGDlIqIG~t~f~Fllp  114 (333)
                      .   +++|++||+|+||+++|.|.+.
T Consensus        76 ~---~~~L~~Gd~i~iG~~~~~f~~~   98 (99)
T d2ff4a3          76 S---AVTLNDGDHIRICDHEFTFQIS   98 (99)
T ss_dssp             S---EEEECTTCEEEETTEEEEEECS
T ss_pred             C---ceECCCCCEEEECCEEEEEEEe
Confidence            2   5899999999999999999874
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure